AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24503

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24503.t1 MTR_1g017490 94.785 652 20 4 1 638 1 652 0.0 1243
MS.gene24503.t1 MTR_1g017490 95.568 519 17 1 126 638 1 519 0.0 1014
MS.gene24503.t1 MTR_2g041430 58.407 113 47 0 130 242 7 119 1.37e-40 152
MS.gene24503.t1 MTR_2g041430 58.407 113 47 0 130 242 7 119 1.59e-40 152
MS.gene24503.t1 MTR_2g041430 58.407 113 47 0 130 242 7 119 1.62e-40 152
MS.gene24503.t1 MTR_8g020560 55.357 112 46 1 131 242 12 119 1.68e-39 149
MS.gene24503.t1 MTR_0001s0490 51.825 137 49 3 130 266 25 144 1.25e-36 140
MS.gene24503.t1 MTR_5g027030 58.407 113 31 2 130 242 16 112 4.04e-36 138
MS.gene24503.t1 MTR_7g104050 55.652 115 47 2 128 242 76 186 1.79e-32 129
MS.gene24503.t1 MTR_7g104050 55.556 117 44 3 128 242 76 186 2.00e-32 129
MS.gene24503.t1 MTR_3g092330 54.783 115 26 3 130 242 113 203 5.84e-32 130
MS.gene24503.t1 MTR_8g035910 43.363 113 44 3 131 242 50 143 3.82e-20 94.0
MS.gene24503.t1 MTR_8g035910 35.878 131 77 4 145 271 243 370 1.74e-11 67.0
MS.gene24503.t1 MTR_8g035640 50.000 58 25 1 183 236 32 89 2.40e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24503.t1 AT2G22840 38.426 648 224 23 27 640 22 528 4.57e-91 292
MS.gene24503.t1 AT4G37740 37.997 629 213 27 32 614 28 525 1.52e-83 273
MS.gene24503.t1 AT3G13960 58.407 113 43 1 130 242 16 124 4.86e-41 154
MS.gene24503.t1 AT2G36400 57.391 115 48 1 128 242 74 187 8.85e-34 134
MS.gene24503.t1 AT2G06200 45.342 161 75 4 130 278 6 165 2.23e-32 125
MS.gene24503.t1 AT2G06200 45.342 161 75 4 130 278 45 204 2.24e-32 127
MS.gene24503.t1 AT3G52910 51.240 121 47 2 128 242 80 194 4.05e-31 125
MS.gene24503.t1 AT4G24150 48.696 115 59 0 128 242 109 223 5.04e-26 111
MS.gene24503.t1 AT4G24150 44.138 145 74 2 101 242 121 261 9.09e-26 111
MS.gene24503.t1 AT5G53660 43.939 132 53 2 124 255 53 163 9.29e-24 103
MS.gene24503.t1 AT4G24150 45.714 140 51 5 128 242 147 286 2.24e-23 104
MS.gene24503.t1 AT2G45480 49.074 108 47 3 134 239 28 129 2.53e-22 98.6
MS.gene24503.t1 AT2G45480 49.074 108 47 3 134 239 26 127 1.82e-21 98.2
MS.gene24503.t1 AT2G45480 46.479 71 36 2 198 268 304 372 5.15e-13 72.0
MS.gene24503.t1 AT2G45480 49.074 108 47 3 134 239 28 129 1.88e-21 97.8
MS.gene24503.t1 AT2G45480 46.479 71 36 2 198 268 306 374 5.33e-13 72.0
MS.gene24503.t1 AT2G06200 46.237 93 44 2 192 278 1 93 1.85e-16 78.2

Find 152 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAACTCTCCCAAGTTAT+TGG 0.152774 1.1:+5034468 None:intergenic
AAGAATATGAACAACCTTAT+TGG 0.157641 1.1:-5035663 MS.gene24503:CDS
CATAAGACAATGCAGCATTT+TGG 0.211480 1.1:+5037754 None:intergenic
AATAAGGTTGTTCATATTCT+TGG 0.221832 1.1:+5035665 None:intergenic
AACCATCAGTCATGAGATTT+AGG 0.225448 1.1:+5034349 None:intergenic
GTGATCATCATTTGCATTGT+AGG 0.266573 1.1:+5034401 None:intergenic
CTTGGTGGAGTGAGTTTAGA+AGG 0.269348 1.1:-5038041 MS.gene24503:CDS
TCTTCATCTATTGTTGTTCC+TGG 0.272838 1.1:-5035735 MS.gene24503:CDS
TCTGTTCTCCTACACCTTCC+TGG 0.276185 1.1:+5035975 None:intergenic
ATACTACAAAGCAAGCTAAT+TGG 0.301022 1.1:-5034494 MS.gene24503:CDS
CTCCTACACCTTCCTGGTTC+CGG 0.301178 1.1:+5035981 None:intergenic
ACAGAAAACCTCCACTTTGC+TGG 0.307229 1.1:-5034868 MS.gene24503:CDS
AAGCATTATCTTGTCCAATA+AGG 0.312606 1.1:+5035649 None:intergenic
GAGCCTGCATCTCGGTTTGT+AGG 0.333439 1.1:+5034813 None:intergenic
GTTTGAACAGGTTATAGTTC+TGG 0.342225 1.1:-5036978 MS.gene24503:intron
AGTTTGTGCAATGATCTTCT+AGG 0.349835 1.1:-5034189 MS.gene24503:CDS
TGGAGTGAGTTTAGAAGGTT+TGG 0.355173 1.1:-5038036 MS.gene24503:CDS
TCCTCGAGGAACAATGAATT+CGG 0.355251 1.1:-5034924 MS.gene24503:CDS
TCATATTCTTGGAATGTTCC+TGG 0.358480 1.1:+5035676 None:intergenic
ACACCTAACCCCATTTGAAT+AGG 0.359219 1.1:+5034561 None:intergenic
AACTCACACTTTCACCTCTT+AGG 0.372743 1.1:-5034602 MS.gene24503:CDS
CTAATTGGATTCCAATAACT+TGG 0.378217 1.1:-5034479 MS.gene24503:CDS
TTGATTGATGCAGTGGGATG+GGG 0.381772 1.1:-5036038 MS.gene24503:intron
TTGGTGATCTGAGTGAGTTT+TGG 0.385367 1.1:+5034755 None:intergenic
CACTCTTAGCTTTGCACACC+AGG 0.388983 1.1:-5035694 MS.gene24503:CDS
GTGAAGATGAACCGAAGGTT+CGG 0.390750 1.1:+5034841 None:intergenic
TTCCACCAGTGGTGAGAGCC+TGG 0.403872 1.1:+5035841 None:intergenic
CCACAGGCTTTCTTGAACGA+TGG 0.404313 1.1:+5035877 None:intergenic
GAAATAGACCCTATTCAAAT+GGG 0.406443 1.1:-5034570 MS.gene24503:CDS
AGAAATAGACCCTATTCAAA+TGG 0.409611 1.1:-5034571 MS.gene24503:CDS
AAGCCTGTGGAAGGCCAATC+TGG 0.411103 1.1:-5035864 MS.gene24503:CDS
ACCATCAGTCATGAGATTTA+GGG 0.418748 1.1:+5034350 None:intergenic
TGGCCAGATTGGCCTTCCAC+AGG 0.420452 1.1:+5035861 None:intergenic
TCTGGCCAGGCTCTCACCAC+TGG 0.421683 1.1:-5035846 MS.gene24503:CDS
TAACTGTACATACATGCATT+TGG 0.424628 1.1:+5036783 None:intergenic
TGAAGATGAACCGAAGGTTC+GGG 0.426118 1.1:+5034842 None:intergenic
TTTGATTGATGCAGTGGGAT+GGG 0.426520 1.1:-5036039 MS.gene24503:intron
AACAACACCGATCCGGAACC+AGG 0.428029 1.1:-5035993 MS.gene24503:CDS
TTGCTGGGAACCCGAACCTT+CGG 0.432840 1.1:-5034852 MS.gene24503:CDS
AATAACTTGGGAGAGTTCAA+TGG 0.434636 1.1:-5034466 MS.gene24503:CDS
CACCTAACCCCATTTGAATA+GGG 0.440538 1.1:+5034562 None:intergenic
CCTCGAGGAACAATGAATTC+GGG 0.441663 1.1:-5034923 MS.gene24503:CDS
AGTAGTAGCAGCTGTATTTG+TGG 0.442455 1.1:+5035818 None:intergenic
TGGTGAGAGCCTGGCCAGAT+TGG 0.445236 1.1:+5035850 None:intergenic
AAATCTCATGACTGATGGTT+GGG 0.448530 1.1:-5034346 MS.gene24503:CDS
ATGGATGGAGTTGGAACATC+AGG 0.449683 1.1:-5036922 MS.gene24503:CDS
TGTGGAAGGCCAATCTGGCC+AGG 0.452012 1.1:-5035859 MS.gene24503:CDS
AATGCAAATGATGATCACTA+TGG 0.452218 1.1:-5034396 MS.gene24503:CDS
TTACTTAAACAAGAGAGATC+TGG 0.453042 1.1:-5037960 MS.gene24503:CDS
TTCTGCCCTTGGACTACTAC+CGG 0.453252 1.1:+5034239 None:intergenic
GTCCTTCAAAAGACTGCATT+CGG 0.456928 1.1:-5034282 MS.gene24503:CDS
AGAAAAGCCCTTGATTCTGC+TGG 0.462621 1.1:-5036837 MS.gene24503:CDS
CTGCTGCCAACACCATCAAC+AGG 0.462743 1.1:-5035623 MS.gene24503:intron
CAGAAAACCTCCACTTTGCT+GGG 0.465527 1.1:-5034867 MS.gene24503:CDS
TTCTGACCTGTTGATGGTGT+TGG 0.470559 1.1:+5035617 None:intergenic
ATTTCTCTTGATAGCCTAAG+AGG 0.472531 1.1:+5034588 None:intergenic
CCGGTTGGCGATGATCCAAT+TGG 0.472751 1.1:+5034306 None:intergenic
TCTAGAGTGGGTGGCAGCAT+TGG 0.473483 1.1:+5035008 None:intergenic
TCTAGTTACAACAGAAATAC+AGG 0.475853 1.1:-5037711 MS.gene24503:intron
TGGTACAACAACAATGGATC+TGG 0.476248 1.1:-5037984 MS.gene24503:CDS
AGCCTGCATCTCGGTTTGTA+GGG 0.477728 1.1:+5034814 None:intergenic
GGGATGGGGAGGATTCCATC+TGG 0.478367 1.1:-5036024 MS.gene24503:CDS
CTTTGGTTTCAACTCTAGAG+TGG 0.478958 1.1:+5034995 None:intergenic
TGTTTCTAAATGGATCTTGG+TGG 0.483588 1.1:-5038056 None:intergenic
TAGATAAGCCAGCAGAATCA+AGG 0.485816 1.1:+5036829 None:intergenic
ATTCAAATGGGGTTAGGTGT+TGG 0.489350 1.1:-5034558 MS.gene24503:CDS
AGTTCAATGGGTGGTCCACT+TGG 0.489957 1.1:-5034453 MS.gene24503:CDS
AATCACAATAGTCCTCCAAT+TGG 0.497889 1.1:-5034321 MS.gene24503:CDS
CCAATTGGATCATCGCCAAC+CGG 0.498011 1.1:-5034306 MS.gene24503:CDS
AGCTCGACATGCAGTCTGAT+AGG 0.498577 1.1:-5034698 MS.gene24503:CDS
GACCATTCACACCTTCTCAA+TGG 0.498886 1.1:-5036941 MS.gene24503:CDS
GGTGGCAGCATTGGTAGTGC+AGG 0.500285 1.1:+5035017 None:intergenic
GACCCTATTCAAATGGGGTT+AGG 0.500567 1.1:-5034564 MS.gene24503:CDS
TTCAACACCGATGACTTCCT+CGG 0.501884 1.1:-5034661 MS.gene24503:CDS
AACCCTACAAACCGAGATGC+AGG 0.503273 1.1:-5034816 MS.gene24503:CDS
AGTCATCGATAAAATGCCTA+AGG 0.505750 1.1:+5034781 None:intergenic
TGATGAACCACTTGGAGTAA+TGG 0.508265 1.1:+5035788 None:intergenic
TTTGGTTTCAACTCTAGAGT+GGG 0.508283 1.1:+5034996 None:intergenic
TGAAGGGTTCAGAAGGGAAT+CGG 0.508397 1.1:+5034890 None:intergenic
AACAATAAAACAACTCAAGA+AGG 0.516329 1.1:-5034216 MS.gene24503:CDS
CAGGCTCTCAGCAATCCCTT+AGG 0.516400 1.1:-5034797 MS.gene24503:CDS
ATTGATGCAGTGGGATGGGG+AGG 0.517801 1.1:-5036035 MS.gene24503:intron
ATACTCGAACAACACCGATC+CGG 0.522042 1.1:-5036000 MS.gene24503:CDS
TATCCAAATCATGTTGGCAT+TGG 0.526730 1.1:+5033956 None:intergenic
ATCCATTGAGAAGGTGTGAA+TGG 0.529637 1.1:+5036939 None:intergenic
ATCTGCTTTGATGAACCACT+TGG 0.531326 1.1:+5035780 None:intergenic
ATAACTTGGGAGAGTTCAAT+GGG 0.532863 1.1:-5034465 MS.gene24503:CDS
TTTCTGTTGTAACTAGACAT+AGG 0.533184 1.1:+5037717 None:intergenic
TATAGTTCTGGAAGCATGCA+TGG 0.536987 1.1:-5036966 MS.gene24503:CDS
TAAATCTCATGACTGATGGT+TGG 0.537129 1.1:-5034347 MS.gene24503:CDS
GGAGAACAGATGGAAAGAAA+TGG 0.537455 1.1:-5035962 MS.gene24503:CDS
ACACCTTCCTGGTTCCGGAT+CGG 0.539895 1.1:+5035986 None:intergenic
TCATCTATTGTTGTTCCTGG+TGG 0.540775 1.1:-5035732 MS.gene24503:CDS
AAATCATGTTGGCATTGGTA+TGG 0.546597 1.1:+5033961 None:intergenic
AATGGGTGGTCCACTTGGAG+AGG 0.548361 1.1:-5034448 MS.gene24503:CDS
CACCAACATCATAACCGCTC+AGG 0.548639 1.1:-5034738 MS.gene24503:CDS
ATTCACACCTTCTCAATGGA+TGG 0.550208 1.1:-5036937 MS.gene24503:CDS
ACAACACTAGTGAGAGGATG+CGG 0.556435 1.1:-5035046 MS.gene24503:CDS
TGTTGTAACTAGACATAGGA+TGG 0.561408 1.1:+5037721 None:intergenic
ACCTTCTCAATGGATGGAGT+TGG 0.562452 1.1:-5036931 MS.gene24503:CDS
TCAGACTGCATGTCGAGCTC+CGG 0.562970 1.1:+5034702 None:intergenic
AGATAAGCCAGCAGAATCAA+GGG 0.564902 1.1:+5036830 None:intergenic
GGAACAACAATAGATGAAGA+AGG 0.565252 1.1:+5035738 None:intergenic
GATCTTCTAGGATCAACTCT+TGG 0.567836 1.1:-5034177 MS.gene24503:intron
ATGAAGTCCGAGGAAGTCAT+CGG 0.569735 1.1:+5034654 None:intergenic
GCCCTAAATCTCATGACTGA+TGG 0.570545 1.1:-5034351 MS.gene24503:CDS
GGCCAGGCTCTCACCACTGG+TGG 0.570680 1.1:-5035843 MS.gene24503:CDS
GGTTTCAACTCTAGAGTGGG+TGG 0.570696 1.1:+5034999 None:intergenic
TGTATTTGTGGTTCCACCAG+TGG 0.570943 1.1:+5035830 None:intergenic
AACAAATGGTACAACAACAA+TGG 0.572195 1.1:-5037990 MS.gene24503:CDS
GGAAGGTGTAGGAGAACAGA+TGG 0.576607 1.1:-5035972 MS.gene24503:CDS
CGTTCAAGAAAGCCTGTGGA+AGG 0.583949 1.1:-5035873 MS.gene24503:CDS
GGATGGGGAGGATTCCATCT+GGG 0.587603 1.1:-5036023 MS.gene24503:CDS
ACTTCAACCATTACTCCAAG+TGG 0.590678 1.1:-5035795 MS.gene24503:CDS
CAACACTAGTGAGAGGATGC+GGG 0.592208 1.1:-5035045 MS.gene24503:CDS
AATGATGATCACTATGGCAG+AGG 0.596008 1.1:-5034390 MS.gene24503:CDS
TAATTGGATTCCAATAACTT+GGG 0.596671 1.1:-5034478 MS.gene24503:CDS
GTTGGCGATGATCCAATTGG+AGG 0.597813 1.1:+5034309 None:intergenic
TCGGGTTCCCAGCAAAGTGG+AGG 0.601917 1.1:+5034860 None:intergenic
ACATACATGCATTTGGTCTG+AGG 0.604587 1.1:+5036790 None:intergenic
TTGGAAACAGTGTTGCCACC+AGG 0.605229 1.1:+5035717 None:intergenic
TTGATCAAAAGTACTGCGAA+AGG 0.605510 1.1:-5035917 MS.gene24503:CDS
TAGCGCCGGTAGTAGTCCAA+GGG 0.611402 1.1:-5034244 MS.gene24503:CDS
GTAGCGCCGGTAGTAGTCCA+AGG 0.615873 1.1:-5034245 MS.gene24503:CDS
CACCTGAGCGGTTATGATGT+TGG 0.615910 1.1:+5034736 None:intergenic
ATTGCTGAGAGCCTGCATCT+CGG 0.615994 1.1:+5034805 None:intergenic
AGTGCTCTCAATAACAACAA+TGG 0.619149 1.1:-5034531 MS.gene24503:CDS
CTAACATATCCAAATCATGT+TGG 0.620967 1.1:+5033950 None:intergenic
TCCAACTCCATCCATTGAGA+AGG 0.621452 1.1:+5036930 None:intergenic
GTCATCGATAAAATGCCTAA+GGG 0.624408 1.1:+5034782 None:intergenic
CACTCTAGAGTTGAAACCAA+AGG 0.624902 1.1:-5034994 MS.gene24503:CDS
CAACATCATAACCGCTCAGG+TGG 0.625010 1.1:-5034735 MS.gene24503:CDS
GTGTGCAAAGCTAAGAGTGT+TGG 0.626716 1.1:+5035698 None:intergenic
TCACTTTCGAATAGTAGCGC+CGG 0.636444 1.1:-5034258 MS.gene24503:CDS
CCATCGTTCAAGAAAGCCTG+TGG 0.641306 1.1:-5035877 MS.gene24503:CDS
GGTTCGGGTTCCCAGCAAAG+TGG 0.643195 1.1:+5034857 None:intergenic
TTTCTGTGAAGGGTTCAGAA+GGG 0.643231 1.1:+5034884 None:intergenic
CCCGAATTCATTGTTCCTCG+AGG 0.649213 1.1:+5034923 None:intergenic
AGATGAAGAACCTCTCCAAG+TGG 0.649574 1.1:+5034438 None:intergenic
ATCCGGAACCAGGAAGGTGT+AGG 0.650872 1.1:-5035983 MS.gene24503:CDS
ATAGGTAAAAGCAAATGATG+AGG 0.652672 1.1:+5036861 None:intergenic
AGAATAACAACACTAGTGAG+AGG 0.653602 1.1:-5035052 MS.gene24503:CDS
ACACCGATCCGGAACCAGGA+AGG 0.656785 1.1:-5035989 MS.gene24503:CDS
TGTTGTTCGAGTATCCCAGA+TGG 0.657354 1.1:+5036009 None:intergenic
ATCAGTCATGAGATTTAGGG+CGG 0.658516 1.1:+5034353 None:intergenic
ACTAGTGAGAGGATGCGGGA+TGG 0.677577 1.1:-5035041 MS.gene24503:CDS
AAATAGACCCTATTCAAATG+GGG 0.682714 1.1:-5034569 MS.gene24503:CDS
CGTGAACGACATGAAGTCCG+AGG 0.693679 1.1:+5034644 None:intergenic
ACTTGGGAGAGTTCAATGGG+TGG 0.696784 1.1:-5034462 MS.gene24503:CDS
TGCGAAAGGCATATGAACAG+AGG 0.714010 1.1:-5035903 MS.gene24503:CDS
TTTCATATGATGAGTCCTCG+AGG 0.724605 1.1:-5034938 MS.gene24503:CDS
AGTTCTGGAAGCATGCATGG+AGG 0.751541 1.1:-5036963 MS.gene24503:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAAATTTATATATTT+TGG - chr1.1:5034370-5034389 MS.gene24503:CDS 0.0%
!! ATATATGGTTTATTTATTTA+TGG - chr1.1:5037994-5038013 MS.gene24503:CDS 10.0%
!!! AAATTTATATATTTTGGATT+TGG - chr1.1:5034376-5034395 MS.gene24503:CDS 10.0%
!!! TATTTATTTATTTTCATGTA+AGG + chr1.1:5034805-5034824 None:intergenic 10.0%
!! ATGATATTACATTACATATA+TGG - chr1.1:5037979-5037998 MS.gene24503:CDS 15.0%
!! TATCTTTGTTAGTATTAATT+AGG + chr1.1:5035270-5035289 None:intergenic 15.0%
!! TATGTATTTATGAATCTATA+TGG - chr1.1:5034408-5034427 MS.gene24503:CDS 15.0%
!!! AGTTATTTTTAACAAAATCA+AGG + chr1.1:5036456-5036475 None:intergenic 15.0%
!!! ATTTTCTAATATAATGCAAA+GGG + chr1.1:5035637-5035656 None:intergenic 15.0%
!!! TATTTTCTAATATAATGCAA+AGG + chr1.1:5035638-5035657 None:intergenic 15.0%
!!! TATTTTTTTTCCAATCATTT+TGG - chr1.1:5035381-5035400 MS.gene24503:intron 15.0%
!!! TTGTAATTTTGGTTAATTTA+AGG - chr1.1:5035571-5035590 MS.gene24503:intron 15.0%
!! ATAAGGTTGTTATAGTTATA+AGG - chr1.1:5034457-5034476 MS.gene24503:CDS 20.0%
!! ATTTATGAGCTATAATATGT+AGG - chr1.1:5034697-5034716 MS.gene24503:CDS 20.0%
!! CTAACAAAGATAAACATTAT+TGG - chr1.1:5035278-5035297 MS.gene24503:intron 20.0%
!! TAGTTGAAAATTAACAATCA+AGG + chr1.1:5035885-5035904 None:intergenic 20.0%
!! TATAGTACTAATCAATATGT+AGG - chr1.1:5036497-5036516 MS.gene24503:intron 20.0%
!! TATATTCCGTTATTCATTTA+GGG - chr1.1:5036732-5036751 MS.gene24503:intron 20.0%
!! TTATATTCCGTTATTCATTT+AGG - chr1.1:5036731-5036750 MS.gene24503:intron 20.0%
!!! AAAAGCTACAAAATTTTGAT+TGG - chr1.1:5034724-5034743 MS.gene24503:CDS 20.0%
!!! AAGGATGTTTTTTGTAATTT+TGG - chr1.1:5035560-5035579 MS.gene24503:intron 20.0%
!!! AATCAACTTTTTTTGTGTTT+TGG - chr1.1:5034946-5034965 MS.gene24503:CDS 20.0%
!!! ATGGAAATATATTTTTTGAG+TGG - chr1.1:5034513-5034532 MS.gene24503:CDS 20.0%
!!! TACATATTGATTAGTACTAT+AGG + chr1.1:5036498-5036517 None:intergenic 20.0%
!!! TTATTTATTTTCATGTAAGG+AGG + chr1.1:5034802-5034821 None:intergenic 20.0%
!!! TTTGTTACTTTTGTGTATAA+GGG - chr1.1:5036851-5036870 MS.gene24503:CDS 20.0%
!!! TTTTGTTACTTTTGTGTATA+AGG - chr1.1:5036850-5036869 MS.gene24503:CDS 20.0%
! AACAATAAAACAACTCAAGA+AGG - chr1.1:5037795-5037814 MS.gene24503:CDS 25.0%
! AAGAATATGAACAACCTTAT+TGG - chr1.1:5036348-5036367 MS.gene24503:intron 25.0%
! AATAAGGTTGTTCATATTCT+TGG + chr1.1:5036349-5036368 None:intergenic 25.0%
! AATCTATATGGTATCCATTT+GGG - chr1.1:5034420-5034439 MS.gene24503:CDS 25.0%
! AATCTCACACATTCAATTTA+AGG + chr1.1:5035408-5035427 None:intergenic 25.0%
! AATGTACCAAAATTGCAAAA+AGG - chr1.1:5035444-5035463 MS.gene24503:intron 25.0%
! AATTTAAGGACCAAAATGAT+TGG + chr1.1:5035394-5035413 None:intergenic 25.0%
! ATGTACCAAAATTGCAAAAA+GGG - chr1.1:5035445-5035464 MS.gene24503:intron 25.0%
! ATTAATTAGGCAAGGAAAAA+GGG + chr1.1:5035257-5035276 None:intergenic 25.0%
! CTTCAAACACAAATTTGATT+CGG + chr1.1:5035664-5035683 None:intergenic 25.0%
! GAATCAAATTTGTGTTTGAA+GGG - chr1.1:5035663-5035682 MS.gene24503:CDS 25.0%
! TAATTGGATTCCAATAACTT+GGG - chr1.1:5037533-5037552 MS.gene24503:intron 25.0%
! TAGAGAATCACAATCAATTA+CGG + chr1.1:5036677-5036696 None:intergenic 25.0%
! TATTAATTAGGCAAGGAAAA+AGG + chr1.1:5035258-5035277 None:intergenic 25.0%
! TGAAAAAACAAATTGATCGT+TGG - chr1.1:5035768-5035787 MS.gene24503:CDS 25.0%
! TTAAGTCATGTCAAGAAAAA+AGG - chr1.1:5034546-5034565 MS.gene24503:CDS 25.0%
! TTGTTAGTATTAATTAGGCA+AGG + chr1.1:5035265-5035284 None:intergenic 25.0%
!! TGTATTTTATGTCTCTATGA+CGG - chr1.1:5036633-5036652 MS.gene24503:intron 25.0%
!!! AAAGATTCAGATTTTGAAGT+AGG + chr1.1:5034219-5034238 None:intergenic 25.0%
!!! ACAGATTTTTTAGAGAAAGA+TGG + chr1.1:5034762-5034781 None:intergenic 25.0%
!!! ACAGGTACAACATTTTTTTT+AGG - chr1.1:5034318-5034337 MS.gene24503:CDS 25.0%
!!! ATGAAAGATTGATTTTCCTT+TGG + chr1.1:5037036-5037055 None:intergenic 25.0%
!!! TTGCAATTTTGGTACATTTA+GGG + chr1.1:5035442-5035461 None:intergenic 25.0%
!!! TTTGCAATTTTGGTACATTT+AGG + chr1.1:5035443-5035462 None:intergenic 25.0%
!!! TTTTTTTGTTTCTTGTTTGC+AGG - chr1.1:5036917-5036936 MS.gene24503:CDS 25.0%
AAAAAAAGGCTATAGTCTGA+AGG + chr1.1:5034896-5034915 None:intergenic 30.0%
AAATAGACCCTATTCAAATG+GGG - chr1.1:5037442-5037461 MS.gene24503:intron 30.0%
AACAAATGGTACAACAACAA+TGG - chr1.1:5034021-5034040 MS.gene24503:intron 30.0%
AAGCATTATCTTGTCCAATA+AGG + chr1.1:5036365-5036384 None:intergenic 30.0%
AATGCAAATGATGATCACTA+TGG - chr1.1:5037615-5037634 MS.gene24503:intron 30.0%
ACAGTATTCAACAAACATCA+AGG + chr1.1:5035015-5035034 None:intergenic 30.0%
ACATAAAATACATGATGCCA+CGG + chr1.1:5036625-5036644 None:intergenic 30.0%
AGAAATAGACCCTATTCAAA+TGG - chr1.1:5037440-5037459 MS.gene24503:intron 30.0%
ATACTACAAAGCAAGCTAAT+TGG - chr1.1:5037517-5037536 MS.gene24503:intron 30.0%
ATAGGTAAAAGCAAATGATG+AGG + chr1.1:5035153-5035172 None:intergenic 30.0%
ATCCTGAGTCAAAAAACAAA+TGG - chr1.1:5034007-5034026 MS.gene24503:intron 30.0%
ATCTATATGGTATCCATTTG+GGG - chr1.1:5034421-5034440 MS.gene24503:CDS 30.0%
CATCAAGGTAAAGTCAAAAA+AGG + chr1.1:5035000-5035019 None:intergenic 30.0%
CGAATCAAATTTGTGTTTGA+AGG - chr1.1:5035662-5035681 MS.gene24503:CDS 30.0%
CTAATTGGATTCCAATAACT+TGG - chr1.1:5037532-5037551 MS.gene24503:intron 30.0%
GAAATAGACCCTATTCAAAT+GGG - chr1.1:5037441-5037460 MS.gene24503:intron 30.0%
GAATCATTCAAAAGTCAATG+TGG - chr1.1:5035718-5035737 MS.gene24503:CDS 30.0%
GAATCTATATGGTATCCATT+TGG - chr1.1:5034419-5034438 MS.gene24503:CDS 30.0%
GGGGAGCTAAAAAATTTATA+AGG - chr1.1:5034440-5034459 MS.gene24503:CDS 30.0%
GTTGTAAATCAGTTTAGTCT+TGG + chr1.1:5035522-5035541 None:intergenic 30.0%
TAACTGTACATACATGCATT+TGG + chr1.1:5035231-5035250 None:intergenic 30.0%
TATTGCAAGAAATGTACCAA+CGG - chr1.1:5036776-5036795 MS.gene24503:intron 30.0%
TCTAGTTACAACAGAAATAC+AGG - chr1.1:5034300-5034319 MS.gene24503:CDS 30.0%
TGTACCAAAATTGCAAAAAG+GGG - chr1.1:5035446-5035465 MS.gene24503:intron 30.0%
TGTAGTCCCTAAATGAATAA+CGG + chr1.1:5036741-5036760 None:intergenic 30.0%
TGTCAAGAAAAAAGGAACAT+AGG - chr1.1:5034554-5034573 MS.gene24503:CDS 30.0%
TGTGTATAAGGGATAAATTC+AGG - chr1.1:5036862-5036881 MS.gene24503:CDS 30.0%
TGTTTCTTATAGTTTAGTGC+AGG + chr1.1:5035495-5035514 None:intergenic 30.0%
TTACTTAAACAAGAGAGATC+TGG - chr1.1:5034051-5034070 MS.gene24503:intron 30.0%
TTGTTGAATACTGTTTGAAC+AGG - chr1.1:5035021-5035040 MS.gene24503:CDS 30.0%
TTTCTGTTGTAACTAGACAT+AGG + chr1.1:5034297-5034316 None:intergenic 30.0%
! AAGAGCACACAACAAAAAAA+AGG + chr1.1:5034910-5034929 None:intergenic 30.0%
! ATAAGACAATGCAGCATTTT+GGG + chr1.1:5034259-5034278 None:intergenic 30.0%
! CTTATCTTCTTCCTGTTTTA+GGG - chr1.1:5034619-5034638 MS.gene24503:CDS 30.0%
! TCTTATCTTCTTCCTGTTTT+AGG - chr1.1:5034618-5034637 MS.gene24503:CDS 30.0%
! TTTTTGCACAGTATACTAGA+GGG - chr1.1:5034659-5034678 MS.gene24503:CDS 30.0%
!! ATGTTTTTGATTGATGCAGT+GGG - chr1.1:5035967-5035986 MS.gene24503:CDS 30.0%
!! TATGTTTTTGATTGATGCAG+TGG - chr1.1:5035966-5035985 MS.gene24503:CDS 30.0%
!! TGAAAGTGTGAGTTTTTCAT+TGG + chr1.1:5037403-5037422 None:intergenic 30.0%
!!! AAATTTTTTAGCTCCCCAAA+TGG + chr1.1:5034437-5034456 None:intergenic 30.0%
!!! ACTACACTTTTTTCTTCTGA+TGG - chr1.1:5034165-5034184 MS.gene24503:intron 30.0%
!!! TACCATTTGTTTTTTGACTC+AGG + chr1.1:5034012-5034031 None:intergenic 30.0%
AAATCTCATGACTGATGGTT+GGG - chr1.1:5037665-5037684 MS.gene24503:intron 35.0%
AAATTGCAAAAAGGGGCTAA+TGG - chr1.1:5035453-5035472 MS.gene24503:intron 35.0%
AACCATCAGTCATGAGATTT+AGG + chr1.1:5037665-5037684 None:intergenic 35.0%
AATAACTTGGGAGAGTTCAA+TGG - chr1.1:5037545-5037564 MS.gene24503:intron 35.0%
AATCACAATAGTCCTCCAAT+TGG - chr1.1:5037690-5037709 MS.gene24503:intron 35.0%
ACCATCAGTCATGAGATTTA+GGG + chr1.1:5037664-5037683 None:intergenic 35.0%
AGAATAACAACACTAGTGAG+AGG - chr1.1:5036959-5036978 MS.gene24503:CDS 35.0%
AGTCATCGATAAAATGCCTA+AGG + chr1.1:5037233-5037252 None:intergenic 35.0%
AGTGCTCTCAATAACAACAA+TGG - chr1.1:5037480-5037499 MS.gene24503:intron 35.0%
AGTTTGTGCAATGATCTTCT+AGG - chr1.1:5037822-5037841 MS.gene24503:CDS 35.0%
ATAACTTGGGAGAGTTCAAT+GGG - chr1.1:5037546-5037565 MS.gene24503:intron 35.0%
ATACTTCCTTTACTCCTTAG+AGG - chr1.1:5037862-5037881 MS.gene24503:CDS 35.0%
ATATGTGAATTGTTACGCTG+TGG + chr1.1:5035698-5035717 None:intergenic 35.0%
ATGTAAGGAGGATGTAGAAA+AGG + chr1.1:5034790-5034809 None:intergenic 35.0%
ATTGAACTCTCCCAAGTTAT+TGG + chr1.1:5037546-5037565 None:intergenic 35.0%
CTAATCTAATCACATTCCGT+TGG + chr1.1:5036795-5036814 None:intergenic 35.0%
CTTGACAAGAGATACATTCA+AGG - chr1.1:5035541-5035560 MS.gene24503:intron 35.0%
GGAACAACAATAGATGAAGA+AGG + chr1.1:5036276-5036295 None:intergenic 35.0%
GTATGATTCTACAGTACTGT+TGG - chr1.1:5034479-5034498 MS.gene24503:CDS 35.0%
GTCATCGATAAAATGCCTAA+GGG + chr1.1:5037232-5037251 None:intergenic 35.0%
GTGATCATCATTTGCATTGT+AGG + chr1.1:5037613-5037632 None:intergenic 35.0%
GTTTGAACAGGTTATAGTTC+TGG - chr1.1:5035033-5035052 MS.gene24503:CDS 35.0%
TAAATCTCATGACTGATGGT+TGG - chr1.1:5037664-5037683 MS.gene24503:intron 35.0%
TCATATTCTTGGAATGTTCC+TGG + chr1.1:5036338-5036357 None:intergenic 35.0%
TGATGTCATCAACTCATCAT+TGG - chr1.1:5035907-5035926 MS.gene24503:CDS 35.0%
TGTTGTAACTAGACATAGGA+TGG + chr1.1:5034293-5034312 None:intergenic 35.0%
TTCTTCATCTTGTTCCTCTA+AGG + chr1.1:5037879-5037898 None:intergenic 35.0%
! AAACAAATTAGAGTGTCACG+AGG - chr1.1:5036569-5036588 MS.gene24503:intron 35.0%
! AACAAATTAGAGTGTCACGA+GGG - chr1.1:5036570-5036589 MS.gene24503:intron 35.0%
! ATTTCTCTTGATAGCCTAAG+AGG + chr1.1:5037426-5037445 None:intergenic 35.0%
! CATAAGACAATGCAGCATTT+TGG + chr1.1:5034260-5034279 None:intergenic 35.0%
! GCAGTACTTTTGATCAACAA+CGG + chr1.1:5036091-5036110 None:intergenic 35.0%
! GTTTTTGCACAGTATACTAG+AGG - chr1.1:5034658-5034677 MS.gene24503:CDS 35.0%
! TCTTCATCTATTGTTGTTCC+TGG - chr1.1:5036276-5036295 MS.gene24503:intron 35.0%
! TTAGCCCCTTTTTGCAATTT+TGG + chr1.1:5035453-5035472 None:intergenic 35.0%
!! GTTTTATTGTTTTCTGCCCT+TGG + chr1.1:5037786-5037805 None:intergenic 35.0%
!! TGTGAGTTTTTCATTGGTTG+CGG + chr1.1:5037397-5037416 None:intergenic 35.0%
!! TTGATCAAAAGTACTGCGAA+AGG - chr1.1:5036094-5036113 MS.gene24503:intron 35.0%
!! TTTGGTTTCAACTCTAGAGT+GGG + chr1.1:5037018-5037037 None:intergenic 35.0%
AAAACCCATCTCCCTAAAAC+AGG + chr1.1:5034633-5034652 None:intergenic 40.0%
AACTCACACTTTCACCTCTT+AGG - chr1.1:5037409-5037428 MS.gene24503:intron 40.0%
AATGATGATCACTATGGCAG+AGG - chr1.1:5037621-5037640 MS.gene24503:intron 40.0%
ACACCTAACCCCATTTGAAT+AGG + chr1.1:5037453-5037472 None:intergenic 40.0%
ACATACATGCATTTGGTCTG+AGG + chr1.1:5035224-5035243 None:intergenic 40.0%
ACTTCAACCATTACTCCAAG+TGG - chr1.1:5036216-5036235 MS.gene24503:intron 40.0%
AGAATTGTGACTGAACATCG+TGG - chr1.1:5036705-5036724 MS.gene24503:intron 40.0%
AGATAAGCCAGCAGAATCAA+GGG + chr1.1:5035184-5035203 None:intergenic 40.0%
AGTAGTAGCAGCTGTATTTG+TGG + chr1.1:5036196-5036215 None:intergenic 40.0%
ATCAGTCATGAGATTTAGGG+CGG + chr1.1:5037661-5037680 None:intergenic 40.0%
ATCTGCTTTGATGAACCACT+TGG + chr1.1:5036234-5036253 None:intergenic 40.0%
ATTCAAATGGGGTTAGGTGT+TGG - chr1.1:5037453-5037472 MS.gene24503:intron 40.0%
ATTCACACCTTCTCAATGGA+TGG - chr1.1:5035074-5035093 MS.gene24503:CDS 40.0%
CACCTAACCCCATTTGAATA+GGG + chr1.1:5037452-5037471 None:intergenic 40.0%
GATTCTACAGTACTGTTGGA+GGG - chr1.1:5034483-5034502 MS.gene24503:CDS 40.0%
GGAGAACAGATGGAAAGAAA+TGG - chr1.1:5036049-5036068 MS.gene24503:intron 40.0%
GGTTGAAAACATGTCATGTG+AGG - chr1.1:5035789-5035808 MS.gene24503:CDS 40.0%
GTCCTTCAAAAGACTGCATT+CGG - chr1.1:5037729-5037748 MS.gene24503:CDS 40.0%
TAGATAAGCCAGCAGAATCA+AGG + chr1.1:5035185-5035204 None:intergenic 40.0%
TCCTCGAGGAACAATGAATT+CGG - chr1.1:5037087-5037106 MS.gene24503:intron 40.0%
TGAAAACATGTCATGTGAGG+TGG - chr1.1:5035792-5035811 MS.gene24503:CDS 40.0%
TGATGAACCACTTGGAGTAA+TGG + chr1.1:5036226-5036245 None:intergenic 40.0%
TGATTCTACAGTACTGTTGG+AGG - chr1.1:5034482-5034501 MS.gene24503:CDS 40.0%
TGGAGTGAGTTTAGAAGGTT+TGG - chr1.1:5033975-5033994 MS.gene24503:CDS 40.0%
TGGTACAACAACAATGGATC+TGG - chr1.1:5034027-5034046 MS.gene24503:intron 40.0%
TGTGAGGTGGAGTAGTAATA+TGG - chr1.1:5035805-5035824 MS.gene24503:CDS 40.0%
TTTCATATGATGAGTCCTCG+AGG - chr1.1:5037073-5037092 MS.gene24503:intron 40.0%
TTTCTGTGAAGGGTTCAGAA+GGG + chr1.1:5037130-5037149 None:intergenic 40.0%
TTTGATTGATGCAGTGGGAT+GGG - chr1.1:5035972-5035991 MS.gene24503:CDS 40.0%
! AAAGTGGAGGTTTTCTGTGA+AGG + chr1.1:5037141-5037160 None:intergenic 40.0%
! AAGTGGAGGTTTTCTGTGAA+GGG + chr1.1:5037140-5037159 None:intergenic 40.0%
! ATCCATTGAGAAGGTGTGAA+TGG + chr1.1:5035075-5035094 None:intergenic 40.0%
! ATCCGAATGCAGTCTTTTGA+AGG + chr1.1:5037734-5037753 None:intergenic 40.0%
! CTTGTTCCTCTAAGGAGTAA+AGG + chr1.1:5037871-5037890 None:intergenic 40.0%
! CTTTGGTTTCAACTCTAGAG+TGG + chr1.1:5037019-5037038 None:intergenic 40.0%
! GAATCAAGGGCTTTTCTGAT+AGG + chr1.1:5035171-5035190 None:intergenic 40.0%
! GTTTTGTGAAGATGAACCGA+AGG + chr1.1:5037178-5037197 None:intergenic 40.0%
! TCATCTATTGTTGTTCCTGG+TGG - chr1.1:5036279-5036298 MS.gene24503:intron 40.0%
! TGGTGATCTGAGTGAGTTTT+GGG + chr1.1:5037258-5037277 None:intergenic 40.0%
! TTTTCTGTGAAGGGTTCAGA+AGG + chr1.1:5037131-5037150 None:intergenic 40.0%
!! CACTCTAGAGTTGAAACCAA+AGG - chr1.1:5037017-5037036 MS.gene24503:intron 40.0%
!! CTAGTTTTCTGACCTGTTGA+TGG + chr1.1:5036403-5036422 None:intergenic 40.0%
!! GATCTTCTAGGATCAACTCT+TGG - chr1.1:5037834-5037853 MS.gene24503:CDS 40.0%
!! TATAGTTCTGGAAGCATGCA+TGG - chr1.1:5035045-5035064 MS.gene24503:CDS 40.0%
!! TTGGTGATCTGAGTGAGTTT+TGG + chr1.1:5037259-5037278 None:intergenic 40.0%
!! TTTTGATTGATGCAGTGGGA+TGG - chr1.1:5035971-5035990 MS.gene24503:CDS 40.0%
!!! TCTTCCTGTTTTAGGGAGAT+GGG - chr1.1:5034626-5034645 MS.gene24503:CDS 40.0%
!!! TTCTTCCTGTTTTAGGGAGA+TGG - chr1.1:5034625-5034644 MS.gene24503:CDS 40.0%
AAACATGTCATGTGAGGTGG+TGG - chr1.1:5035795-5035814 MS.gene24503:CDS 45.0%
ACAACACTAGTGAGAGGATG+CGG - chr1.1:5036965-5036984 MS.gene24503:CDS 45.0%
ACAGAAAACCTCCACTTTGC+TGG - chr1.1:5037143-5037162 MS.gene24503:intron 45.0%
ACCTTCTCAATGGATGGAGT+TGG - chr1.1:5035080-5035099 MS.gene24503:intron 45.0%
AGAAAAGCCCTTGATTCTGC+TGG - chr1.1:5035174-5035193 MS.gene24503:intron 45.0%
AGATGAAGAACCTCTCCAAG+TGG + chr1.1:5037576-5037595 None:intergenic 45.0%
ATACTCGAACAACACCGATC+CGG - chr1.1:5036011-5036030 MS.gene24503:CDS 45.0%
ATGAAGTCCGAGGAAGTCAT+CGG + chr1.1:5037360-5037379 None:intergenic 45.0%
ATGGATGGAGTTGGAACATC+AGG - chr1.1:5035089-5035108 MS.gene24503:intron 45.0%
CAGAAAACCTCCACTTTGCT+GGG - chr1.1:5037144-5037163 MS.gene24503:intron 45.0%
CCTCGAGGAACAATGAATTC+GGG - chr1.1:5037088-5037107 MS.gene24503:intron 45.0%
CTTGGTGGAGTGAGTTTAGA+AGG - chr1.1:5033970-5033989 MS.gene24503:CDS 45.0%
GACCATTCACACCTTCTCAA+TGG - chr1.1:5035070-5035089 MS.gene24503:CDS 45.0%
GACCCTATTCAAATGGGGTT+AGG - chr1.1:5037447-5037466 MS.gene24503:intron 45.0%
GCCCTAAATCTCATGACTGA+TGG - chr1.1:5037660-5037679 MS.gene24503:intron 45.0%
GTGAAGATGAACCGAAGGTT+CGG + chr1.1:5037173-5037192 None:intergenic 45.0%
TCACTTTCGAATAGTAGCGC+CGG - chr1.1:5037753-5037772 MS.gene24503:CDS 45.0%
TCCAACTCCATCCATTGAGA+AGG + chr1.1:5035084-5035103 None:intergenic 45.0%
TGAAGATGAACCGAAGGTTC+GGG + chr1.1:5037172-5037191 None:intergenic 45.0%
TGAAGGGTTCAGAAGGGAAT+CGG + chr1.1:5037124-5037143 None:intergenic 45.0%
TGTATTTGTGGTTCCACCAG+TGG + chr1.1:5036184-5036203 None:intergenic 45.0%
TGTTGTTCGAGTATCCCAGA+TGG + chr1.1:5036005-5036024 None:intergenic 45.0%
TTCAACACCGATGACTTCCT+CGG - chr1.1:5037350-5037369 MS.gene24503:intron 45.0%
TTGATTGATGCAGTGGGATG+GGG - chr1.1:5035973-5035992 MS.gene24503:CDS 45.0%
TTGCAAAAAGGGGCTAATGG+AGG - chr1.1:5035456-5035475 MS.gene24503:intron 45.0%
! ACTGTTGGAGGGTCTTTTCA+TGG - chr1.1:5034494-5034513 MS.gene24503:CDS 45.0%
! GATAGCGTGTCACTAGTTCA+AGG - chr1.1:5035602-5035621 MS.gene24503:intron 45.0%
! GTGTGCAAAGCTAAGAGTGT+TGG + chr1.1:5036316-5036335 None:intergenic 45.0%
! TGCGAAAGGCATATGAACAG+AGG - chr1.1:5036108-5036127 MS.gene24503:intron 45.0%
!! GAGTTTTTCATTGGTTGCGG+AGG + chr1.1:5037394-5037413 None:intergenic 45.0%
!! TGCAGTCTTTTGAAGGACTC+CGG + chr1.1:5037727-5037746 None:intergenic 45.0%
!! TTCTGACCTGTTGATGGTGT+TGG + chr1.1:5036397-5036416 None:intergenic 45.0%
AACCCTACAAACCGAGATGC+AGG - chr1.1:5037195-5037214 MS.gene24503:intron 50.0%
ACTTGGGAGAGTTCAATGGG+TGG - chr1.1:5037549-5037568 MS.gene24503:intron 50.0%
AGCTCGACATGCAGTCTGAT+AGG - chr1.1:5037313-5037332 MS.gene24503:intron 50.0%
AGTTCAATGGGTGGTCCACT+TGG - chr1.1:5037558-5037577 MS.gene24503:intron 50.0%
ATTGCTGAGAGCCTGCATCT+CGG + chr1.1:5037209-5037228 None:intergenic 50.0%
CAACACTAGTGAGAGGATGC+GGG - chr1.1:5036966-5036985 MS.gene24503:CDS 50.0%
CAACATCATAACCGCTCAGG+TGG - chr1.1:5037276-5037295 MS.gene24503:intron 50.0%
CACCAACATCATAACCGCTC+AGG - chr1.1:5037273-5037292 MS.gene24503:intron 50.0%
CACCTGAGCGGTTATGATGT+TGG + chr1.1:5037278-5037297 None:intergenic 50.0%
CCAATTGGATCATCGCCAAC+CGG - chr1.1:5037705-5037724 MS.gene24503:intron 50.0%
CCACAGGCTTTCTTGAACGA+TGG + chr1.1:5036137-5036156 None:intergenic 50.0%
CCATCGTTCAAGAAAGCCTG+TGG - chr1.1:5036134-5036153 MS.gene24503:intron 50.0%
CCCGAATTCATTGTTCCTCG+AGG + chr1.1:5037091-5037110 None:intergenic 50.0%
CGTTCAAGAAAGCCTGTGGA+AGG - chr1.1:5036138-5036157 MS.gene24503:intron 50.0%
GCCAAGAAAAACCACCTGAG+CGG + chr1.1:5037290-5037309 None:intergenic 50.0%
GTTGGCGATGATCCAATTGG+AGG + chr1.1:5037705-5037724 None:intergenic 50.0%
TCTGTTCTCCTACACCTTCC+TGG + chr1.1:5036039-5036058 None:intergenic 50.0%
TGTCTCTATGACGGCTGTTG+AGG - chr1.1:5036642-5036661 MS.gene24503:intron 50.0%
TTCTGCCCTTGGACTACTAC+CGG + chr1.1:5037775-5037794 None:intergenic 50.0%
TTGGAAACAGTGTTGCCACC+AGG + chr1.1:5036297-5036316 None:intergenic 50.0%
! ACCGCTCAGGTGGTTTTTCT+TGG - chr1.1:5037286-5037305 MS.gene24503:intron 50.0%
! AGCCTGCATCTCGGTTTGTA+GGG + chr1.1:5037200-5037219 None:intergenic 50.0%
! CTCAGGTGGTTTTTCTTGGC+CGG - chr1.1:5037290-5037309 MS.gene24503:intron 50.0%
! GGAAGGTGTAGGAGAACAGA+TGG - chr1.1:5036039-5036058 MS.gene24503:intron 50.0%
!! AGTTCTGGAAGCATGCATGG+AGG - chr1.1:5035048-5035067 MS.gene24503:CDS 50.0%
!! CACTCTTAGCTTTGCACACC+AGG - chr1.1:5036317-5036336 MS.gene24503:intron 50.0%
!! GGTTTCAACTCTAGAGTGGG+TGG + chr1.1:5037015-5037034 None:intergenic 50.0%
!! GTCTTTTGAAGGACTCCGGT+TGG + chr1.1:5037723-5037742 None:intergenic 50.0%
AACAACACCGATCCGGAACC+AGG - chr1.1:5036018-5036037 MS.gene24503:CDS 55.0%
AAGCCTGTGGAAGGCCAATC+TGG - chr1.1:5036147-5036166 MS.gene24503:intron 55.0%
AATGGGTGGTCCACTTGGAG+AGG - chr1.1:5037563-5037582 MS.gene24503:intron 55.0%
ACACCTTCCTGGTTCCGGAT+CGG + chr1.1:5036028-5036047 None:intergenic 55.0%
ACGGCTCAGATCATAGTCGC+AGG + chr1.1:5036606-5036625 None:intergenic 55.0%
ACTAGTGAGAGGATGCGGGA+TGG - chr1.1:5036970-5036989 MS.gene24503:CDS 55.0%
ATTGATGCAGTGGGATGGGG+AGG - chr1.1:5035976-5035995 MS.gene24503:CDS 55.0%
CAGGCTCTCAGCAATCCCTT+AGG - chr1.1:5037214-5037233 MS.gene24503:intron 55.0%
CCGGTTGGCGATGATCCAAT+TGG + chr1.1:5037708-5037727 None:intergenic 55.0%
CGTGAACGACATGAAGTCCG+AGG + chr1.1:5037370-5037389 None:intergenic 55.0%
CTCCTACACCTTCCTGGTTC+CGG + chr1.1:5036033-5036052 None:intergenic 55.0%
CTGCTGCCAACACCATCAAC+AGG - chr1.1:5036388-5036407 MS.gene24503:intron 55.0%
GGATGGGGAGGATTCCATCT+GGG - chr1.1:5035988-5036007 MS.gene24503:CDS 55.0%
TCAGACTGCATGTCGAGCTC+CGG + chr1.1:5037312-5037331 None:intergenic 55.0%
TGCGACTATGATCTGAGCCG+TGG - chr1.1:5036605-5036624 MS.gene24503:intron 55.0%
TTGCTGGGAACCCGAACCTT+CGG - chr1.1:5037159-5037178 MS.gene24503:intron 55.0%
! ATCCGGAACCAGGAAGGTGT+AGG - chr1.1:5036028-5036047 MS.gene24503:CDS 55.0%
! GAGCCTGCATCTCGGTTTGT+AGG + chr1.1:5037201-5037220 None:intergenic 55.0%
! TCTAGAGTGGGTGGCAGCAT+TGG + chr1.1:5037006-5037025 None:intergenic 55.0%
!! TAGCGCCGGTAGTAGTCCAA+GGG - chr1.1:5037767-5037786 MS.gene24503:CDS 55.0%
ACACCGATCCGGAACCAGGA+AGG - chr1.1:5036022-5036041 MS.gene24503:CDS 60.0%
GGGATGGGGAGGATTCCATC+TGG - chr1.1:5035987-5036006 MS.gene24503:CDS 60.0%
TCGGGTTCCCAGCAAAGTGG+AGG + chr1.1:5037154-5037173 None:intergenic 60.0%
TGGTGAGAGCCTGGCCAGAT+TGG + chr1.1:5036164-5036183 None:intergenic 60.0%
TGTGGAAGGCCAATCTGGCC+AGG - chr1.1:5036152-5036171 MS.gene24503:intron 60.0%
TTCCACCAGTGGTGAGAGCC+TGG + chr1.1:5036173-5036192 None:intergenic 60.0%
! GGTTCGGGTTCCCAGCAAAG+TGG + chr1.1:5037157-5037176 None:intergenic 60.0%
!! GGTGGCAGCATTGGTAGTGC+AGG + chr1.1:5036997-5037016 None:intergenic 60.0%
!! GTAGCGCCGGTAGTAGTCCA+AGG - chr1.1:5037766-5037785 MS.gene24503:CDS 60.0%
!! TGGCCAGATTGGCCTTCCAC+AGG + chr1.1:5036153-5036172 None:intergenic 60.0%
TCTGGCCAGGCTCTCACCAC+TGG - chr1.1:5036165-5036184 MS.gene24503:intron 65.0%
GGCCAGGCTCTCACCACTGG+TGG - chr1.1:5036168-5036187 MS.gene24503:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 5033964 5038069 5033964 ID=MS.gene24503
chr1.1 mRNA 5033964 5038069 5033964 ID=MS.gene24503.t1;Parent=MS.gene24503
chr1.1 exon 5037712 5038069 5037712 ID=MS.gene24503.t1.exon1;Parent=MS.gene24503.t1
chr1.1 CDS 5037712 5038069 5037712 ID=cds.MS.gene24503.t1;Parent=MS.gene24503.t1
chr1.1 exon 5036796 5036990 5036796 ID=MS.gene24503.t1.exon2;Parent=MS.gene24503.t1
chr1.1 CDS 5036796 5036990 5036796 ID=cds.MS.gene24503.t1;Parent=MS.gene24503.t1
chr1.1 exon 5035624 5036047 5035624 ID=MS.gene24503.t1.exon3;Parent=MS.gene24503.t1
chr1.1 CDS 5035624 5036047 5035624 ID=cds.MS.gene24503.t1;Parent=MS.gene24503.t1
chr1.1 exon 5034178 5035094 5034178 ID=MS.gene24503.t1.exon4;Parent=MS.gene24503.t1
chr1.1 CDS 5034178 5035094 5034178 ID=cds.MS.gene24503.t1;Parent=MS.gene24503.t1
chr1.1 exon 5033964 5034001 5033964 ID=MS.gene24503.t1.exon5;Parent=MS.gene24503.t1
chr1.1 CDS 5033964 5034001 5033964 ID=cds.MS.gene24503.t1;Parent=MS.gene24503.t1
Gene Sequence

>MS.gene24503

ATGGATCTTGGTGGAGTGAGTTTAGAAGGTTTGGTTAGTTCAGATCCTGAGTCAAAAAACAAATGGTACAACAACAATGGATCTGGTTTACTTAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTAAGAAGTTTCAAACTTGCAAAAACTGATCAACAAAGAAACTCTTCTTCACTTTTGAGATCTAATGCTACTACTACACTTTTTTCTTCTGATGGTCAACAACAAATGCTTAGTTTTTCAACTCCTACTTCAAAATCTGAATCTTTTTTACTTGACAAAACTACCCAAAATGCTGCATTGTCTTATGCTGCTTCTTACCATCCTATGTCTAGTTACAACAGAAATACAGGTACAACATTTTTTTTAGGTTGTTTTTTTTATCTATCAAAATATATAAATTAAAAAATTTATATATTTTGGATTTGGATATTTTTGTATGTATTTATGAATCTATATGGTATCCATTTGGGGAGCTAAAAAATTTATAAGGTTGTTATAGTTATAAGGTATGATTCTACAGTACTGTTGGAGGGTCTTTTCATGGAAATATATTTTTTGAGTGGTCTCATTTTTTTAAGTCATGTCAAGAAAAAAGGAACATAGGAGAAAAAATAAATTTTGTATTTTATTTATTTATAATAAAATTCTTATCTTCTTCCTGTTTTAGGGAGATGGGTTTTTGTGAGTTTTTGCACAGTATACTAGAGGGTACTAAAGAAGAAAAATTTATGAGCTATAATATGTAGGAAAAAAAAGCTACAAAATTTTGATTGGTTCTGTTCTGTACCATCTTTCTCTAAAAAATCTGTTCTTTCCTTTTCTACATCCTCCTTACATGAAAATAAATAAATAAAAATCTAAAAGTTGACTTGACTGTTATTATTTCTTCAAACTCAGAAAAAAATTATTAATTTTTTTTTCCTTCAGACTATAGCCTTTTTTTTGTTGTGTGCTCTTTTTGAGTTCTGAACTGAATCAACTTTTTTTGTGTTTTGGTTTTAAGTTCTGATTTTTTTTTTTGTTACCTTTTTTGACTTTACCTTGATGTTTGTTGAATACTGTTTGAACAGGTTATAGTTCTGGAAGCATGCATGGAGGACCATTCACACCTTCTCAATGGATGGAGTTGGAACATCAGGCTTTGATCTATAAGTACATCACTGCAAATGTTGCTGTACCTCATCATTTGCTTTTACCTATCAGAAAAGCCCTTGATTCTGCTGGCTTATCTAGCTTCTCAACTGCTCTCCTCAGACCAAATGCATGTATGTACAGTTAGTTCCCTTTTTCCTTGCCTAATTAATACTAACAAAGATAAACATTATTGGATTTTTTTTAATTAGAGACAAATAAAATGAAACTTGTCTCTGATTTGTCTTTTAATGTTAAAGATGTCAAAATTTTAGATTATTTTTTTTCCAATCATTTTGGTCCTTAAATTGAATGTGTGAGATTGTCACTCTAGTCCCTAAATGTACCAAAATTGCAAAAAGGGGCTAATGGAGGACACATACAAAAACCTGCACTAAACTATAAGAAACATATTCCAAGACTAAACTGATTTACAACTTGACAAGAGATACATTCAAGGATGTTTTTTGTAATTTTGGTTAATTTAAGGACTATAGTGATAGCGTGTCACTAGTTCAAGGATCAAAATGCCCTTTGCATTATATTAGAAAATAAGACCGAATCAAATTTGTGTTTGAAGGGATTAGTCTTCCACAGCGTAACAATTCACATATGAATCATTCAAAAGTCAATGTGGAAAAGTGATATGTGTTTTGTTTGTCTTTGAAAAAACAAATTGATCGTTGGTTGAAAACATGTCATGTGAGGTGGAGTAGTAATATGGAAAAGTGATTAGTGTTTTGTTTGTTTCTATGTTTTGCTTTTTTTAAATGATTGACCTTGATTGTTAATTTTCAACTACTTGATGTCATCAACTCATCATTGGTTGAAAACATGTCATGTGAGGTGGTGGAGTGAGTAATATGTTTTTGATTGATGCAGTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAAGTACTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCTGGCCAGGCTCTCACCACTGGTGGAACCACAAATACAGCTGCTACTACTACTTCAACCATTACTCCAAGTGGTTCATCAAAGCAGATCAATTCTGCTGCTGCTTCTCCTTCTTCATCTATTGTTGTTCCTGGTGGCAACACTGTTTCCAACACTCTTAGCTTTGCACACCAGGAACATTCCAAGAATATGAACAACCTTATTGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGGTCAGAAAACTAGTGTTTTACAGTTTTATAGTTATTGTTTACTCCTTGATTTTGTTAAAAATAACTTTTTCAAATAAGAAAAATACCTATAGTACTAATCAATATGTAGGTAACATCTAATTACTCTACTATTTTTAATTACTTAATATTTTTTTAAAGAAACAAATTAGAGTGTCACGAGGGTTTTTCAAAGCCTGCGACTATGATCTGAGCCGTGGCATCATGTATTTTATGTCTCTATGACGGCTGTTGAGGCTGCATCAACCGTAATTGATTGTGATTCTCTACAATATCAAGAATTGTGACTGAACATCGTGGTCATTATATTCCGTTATTCATTTAGGGACTACACTGTTTCAAAGTCATTATTGCAAGAAATGTACCAACGGAATGTGATTAGATTAGTGATTGTGTTCAAAACTATTTTTTTGCATTTTAAATTTTGTTACTTTTGTGTATAAGGGATAAATTCAGGAAATGTGCTTTTTCTATATTGTGTTTGAAAGTTTTTTTTGTTTCTTGTTTGCAGGATGTTCATGAATAACAAAGAGAATAACAACACTAGTGAGAGGATGCGGGATGGTCCTGCACTACCAATGCTGCCACCCACTCTAGAGTTGAAACCAAAGGAAAATCAATCTTTCATGATTCAAAAGCAGCACATTTCATATGATGAGTCCTCGAGGAACAATGAATTCGGGTTTGTCACTTCCGATTCCCTTCTGAACCCTTCACAGAAAACCTCCACTTTGCTGGGAACCCGAACCTTCGGTTCATCTTCACAAAACCCTACAAACCGAGATGCAGGCTCTCAGCAATCCCTTAGGCATTTTATCGATGACTTTCCCAAAACTCACTCAGATCACCAACATCATAACCGCTCAGGTGGTTTTTCTTGGCCGGAGCTCGACATGCAGTCTGATAGGACACAACTATCAATTTCAACACCGATGACTTCCTCGGACTTCATGTCGTTCACGTCCTCCGCAACCAATGAAAAACTCACACTTTCACCTCTTAGGCTATCAAGAGAAATAGACCCTATTCAAATGGGGTTAGGTGTTGGAAGTAGTGCTCTCAATAACAACAATGGATCATCAAACACTAATACTACAAAGCAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGTGGTCCACTTGGAGAGGTTCTTCATCTTAGTAATACTATTACCTACAATGCAAATGATGATCACTATGGCAGAGGCAACAACAATTCGTCCGCCCTAAATCTCATGACTGATGGTTGGGACAATCACAATAGTCCTCCAATTGGATCATCGCCAACCGGAGTCCTTCAAAAGACTGCATTCGGATCACTTTCGAATAGTAGCGCCGGTAGTAGTCCAAGGGCAGAAAACAATAAAACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACTCTTGGTAATAATACTTCCTTTACTCCTTAGAGGAACAAGATGAAGAAGAAGAAGAAAACAAAGAACTTTGTTCTTGTTCTTGACTTTAATTTATTGAGTTTTTTTTTTTTTTTTTTTTTTATATATGATGATATTACATTACATATATGGTTTATTTATTTATGGTTTCTGTTATTATAGTTGTTAATTACTACTATACCATACCAATGCCAACATGA
Protein sequence

>MS.gene24503.t1

MDLGGVSLEGLVSSDPESKNKWYNNNGSGLLKQERSGTCTEDELRSFKLAKTDQQRNSSSLLRSNATTTLFSSDGQQQMLSFSTPTSKSESFLLDKTTQNAALSYAASYHPMSSYNRNTGYSSGSMHGGPFTPSQWMELEHQALIYKYITANVAVPHHLLLPIRKALDSAGLSSFSTALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNTAATTTSTITPSGSSKQINSAAASPSSSIVVPGGNTVSNTLSFAHQEHSKNMNNLIGQDNASSAANTINRMFMNNKENNNTSERMRDGPALPMLPPTLELKPKENQSFMIQKQHISYDESSRNNEFGFVTSDSLLNPSQKTSTLLGTRTFGSSSQNPTNRDAGSQQSLRHFIDDFPKTHSDHQHHNRSGGFSWPELDMQSDRTQLSISTPMTSSDFMSFTSSATNEKLTLSPLRLSREIDPIQMGLGVGSSALNNNNGSSNTNTTKQANWIPITWESSMGGPLGEVLHLSNTITYNANDDHYGRGNNNSSALNLMTDGWDNHNSPPIGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLVVNYYYTIPMPT