Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051778.t1 | XP_013450280.1 | 96.8 | 281 | 9 | 0 | 1 | 281 | 1 | 281 | 1.80E-151 | 545.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051778.t1 | Q9SF09 | 62.6 | 313 | 108 | 2 | 2 | 305 | 12 | 324 | 4.5e-111 | 402.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051778.t1 | A0A072U589 | 96.8 | 281 | 9 | 0 | 1 | 281 | 1 | 281 | 1.3e-151 | 545.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051776 | MS.gene051778 | 0.908172 | 2.29E-81 | -1.69E-46 |
| MS.gene051778 | MS.gene66858 | 0.812301 | 4.54E-51 | -1.69E-46 |
| MS.gene051778 | MS.gene66859 | 0.811913 | 5.52E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051778.t1 | MTR_7g107090 | 96.797 | 281 | 9 | 0 | 1 | 281 | 1 | 281 | 0.0 | 558 |
| MS.gene051778.t1 | MTR_5g024300 | 37.179 | 312 | 177 | 6 | 3 | 301 | 19 | 324 | 3.57e-55 | 186 |
| MS.gene051778.t1 | MTR_8g073340 | 38.562 | 306 | 169 | 5 | 4 | 299 | 12 | 308 | 5.74e-53 | 179 |
| MS.gene051778.t1 | MTR_8g467180 | 29.373 | 303 | 178 | 9 | 13 | 298 | 20 | 303 | 1.38e-26 | 108 |
| MS.gene051778.t1 | MTR_1g094620 | 30.769 | 312 | 184 | 10 | 1 | 299 | 143 | 435 | 6.66e-25 | 105 |
| MS.gene051778.t1 | MTR_1g094620 | 31.802 | 283 | 163 | 9 | 1 | 272 | 143 | 406 | 1.48e-24 | 104 |
| MS.gene051778.t1 | MTR_1g050328 | 29.167 | 264 | 168 | 6 | 17 | 272 | 157 | 409 | 1.72e-24 | 103 |
| MS.gene051778.t1 | MTR_8g467190 | 28.897 | 263 | 167 | 6 | 28 | 282 | 34 | 284 | 1.66e-23 | 100 |
| MS.gene051778.t1 | MTR_8g467070 | 29.963 | 267 | 167 | 6 | 13 | 271 | 20 | 274 | 1.28e-22 | 97.8 |
| MS.gene051778.t1 | MTR_7g010790 | 25.806 | 310 | 195 | 9 | 2 | 297 | 26 | 314 | 9.65e-22 | 95.5 |
| MS.gene051778.t1 | MTR_7g010750 | 25.806 | 310 | 196 | 9 | 1 | 297 | 25 | 313 | 2.94e-21 | 94.0 |
| MS.gene051778.t1 | MTR_3g033730 | 26.190 | 294 | 187 | 8 | 13 | 297 | 42 | 314 | 6.80e-19 | 87.4 |
| MS.gene051778.t1 | MTR_8g465310 | 25.086 | 291 | 196 | 6 | 17 | 297 | 23 | 301 | 1.14e-18 | 86.3 |
| MS.gene051778.t1 | MTR_4g037690 | 26.351 | 296 | 184 | 8 | 14 | 291 | 135 | 414 | 3.72e-18 | 85.5 |
| MS.gene051778.t1 | MTR_7g089920 | 27.698 | 278 | 177 | 8 | 17 | 284 | 146 | 409 | 2.49e-16 | 79.7 |
| MS.gene051778.t1 | MTR_3g465440 | 24.828 | 290 | 192 | 7 | 12 | 289 | 47 | 322 | 3.47e-16 | 79.7 |
| MS.gene051778.t1 | MTR_7g089910 | 27.957 | 279 | 177 | 7 | 17 | 285 | 146 | 410 | 2.10e-15 | 77.0 |
| MS.gene051778.t1 | MTR_3g465510 | 25.091 | 275 | 186 | 6 | 4 | 270 | 33 | 295 | 4.05e-15 | 76.3 |
| MS.gene051778.t1 | MTR_7g062430 | 27.244 | 312 | 181 | 11 | 3 | 283 | 133 | 429 | 3.49e-14 | 73.6 |
| MS.gene051778.t1 | MTR_3g084960 | 27.839 | 273 | 175 | 8 | 9 | 271 | 74 | 334 | 7.05e-13 | 69.3 |
| MS.gene051778.t1 | MTR_8g080120 | 21.181 | 288 | 204 | 7 | 1 | 272 | 14 | 294 | 1.46e-11 | 65.5 |
| MS.gene051778.t1 | MTR_3g005740 | 23.171 | 328 | 221 | 10 | 6 | 308 | 48 | 369 | 1.85e-11 | 65.1 |
| MS.gene051778.t1 | MTR_7g062410 | 25.442 | 283 | 181 | 8 | 6 | 272 | 24 | 292 | 3.93e-11 | 63.9 |
| MS.gene051778.t1 | MTR_6g022780 | 22.064 | 281 | 200 | 6 | 4 | 270 | 8 | 283 | 5.56e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051778.t1 | AT3G11900 | 66.667 | 288 | 88 | 1 | 2 | 281 | 12 | 299 | 3.87e-138 | 399 |
| MS.gene051778.t1 | AT3G11900 | 66.667 | 288 | 88 | 1 | 2 | 281 | 12 | 299 | 3.87e-138 | 399 |
| MS.gene051778.t1 | AT4G38250 | 36.950 | 341 | 176 | 8 | 3 | 319 | 22 | 347 | 1.33e-56 | 189 |
| MS.gene051778.t1 | AT2G42005 | 37.048 | 332 | 178 | 7 | 3 | 319 | 11 | 326 | 3.91e-54 | 182 |
| MS.gene051778.t1 | AT5G65990 | 37.255 | 306 | 174 | 6 | 3 | 297 | 27 | 325 | 1.17e-46 | 163 |
| MS.gene051778.t1 | AT2G39130 | 27.508 | 309 | 200 | 9 | 1 | 299 | 150 | 444 | 5.12e-23 | 100 |
| MS.gene051778.t1 | AT2G39130 | 27.508 | 309 | 200 | 9 | 1 | 299 | 150 | 444 | 5.12e-23 | 100 |
| MS.gene051778.t1 | AT2G39130 | 27.508 | 309 | 200 | 9 | 1 | 299 | 150 | 444 | 5.94e-23 | 99.4 |
| MS.gene051778.t1 | AT5G15240 | 23.843 | 281 | 193 | 6 | 28 | 298 | 48 | 317 | 1.02e-22 | 98.2 |
| MS.gene051778.t1 | AT5G02180 | 27.742 | 310 | 195 | 9 | 4 | 299 | 150 | 444 | 2.01e-22 | 98.2 |
| MS.gene051778.t1 | AT5G02180 | 27.742 | 310 | 195 | 9 | 4 | 299 | 150 | 444 | 2.01e-22 | 98.2 |
| MS.gene051778.t1 | AT3G54830 | 30.292 | 274 | 165 | 8 | 10 | 272 | 147 | 405 | 4.75e-22 | 97.1 |
| MS.gene051778.t1 | AT3G54830 | 30.292 | 274 | 165 | 8 | 10 | 272 | 147 | 405 | 4.75e-22 | 97.1 |
| MS.gene051778.t1 | AT5G02170 | 29.412 | 272 | 164 | 10 | 17 | 276 | 139 | 394 | 5.93e-18 | 85.1 |
| MS.gene051778.t1 | AT3G09330 | 29.197 | 274 | 162 | 10 | 17 | 276 | 138 | 393 | 1.83e-17 | 83.6 |
| MS.gene051778.t1 | AT3G28960 | 23.148 | 324 | 214 | 9 | 13 | 322 | 16 | 318 | 3.46e-17 | 82.0 |
| MS.gene051778.t1 | AT3G28960 | 23.148 | 324 | 214 | 9 | 13 | 322 | 16 | 318 | 3.46e-17 | 82.0 |
| MS.gene051778.t1 | AT3G28960 | 23.148 | 324 | 214 | 9 | 13 | 322 | 16 | 318 | 3.46e-17 | 82.0 |
| MS.gene051778.t1 | AT3G28960 | 23.148 | 324 | 214 | 9 | 13 | 322 | 16 | 318 | 3.46e-17 | 82.0 |
| MS.gene051778.t1 | AT5G16740 | 25.795 | 283 | 185 | 8 | 2 | 272 | 16 | 285 | 3.52e-17 | 82.4 |
| MS.gene051778.t1 | AT3G09340 | 29.197 | 274 | 162 | 10 | 17 | 276 | 138 | 393 | 6.62e-17 | 81.6 |
| MS.gene051778.t1 | AT2G41190 | 25.556 | 270 | 177 | 7 | 14 | 273 | 148 | 403 | 1.73e-16 | 80.5 |
| MS.gene051778.t1 | AT2G41190 | 25.556 | 270 | 177 | 7 | 14 | 273 | 148 | 403 | 2.07e-16 | 80.5 |
| MS.gene051778.t1 | AT5G15240 | 22.650 | 234 | 165 | 4 | 75 | 298 | 4 | 231 | 8.38e-16 | 77.4 |
| MS.gene051778.t1 | AT3G28960 | 23.438 | 256 | 168 | 6 | 81 | 322 | 8 | 249 | 4.96e-14 | 72.4 |
| MS.gene051778.t1 | AT5G02170 | 27.652 | 264 | 150 | 10 | 17 | 276 | 139 | 365 | 5.35e-13 | 70.1 |
Find 79 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTACAATCTCATTAAT+TGG | 0.119192 | 7.3:+6692066 | None:intergenic |
| AAAGTCTGAGCCAGCAATTT+TGG | 0.194534 | 7.3:+6693003 | None:intergenic |
| CGGATTGCTGGTTGGGTTGC+TGG | 0.195646 | 7.3:-6694182 | MS.gene051778:CDS |
| ATGCTAGTACCAGTTGAAAT+TGG | 0.202789 | 7.3:-6693285 | MS.gene051778:CDS |
| TTGAAGCTTTGAAGCTCTTT+TGG | 0.211711 | 7.3:+6694268 | None:intergenic |
| ACCAGCTCCTAGGGAGATTA+AGG | 0.232883 | 7.3:+6692899 | None:intergenic |
| GTTGCGTATTTGGTATTTAT+TGG | 0.257482 | 7.3:-6693366 | MS.gene051778:CDS |
| TGCAGGATCTGTTGCGTATT+TGG | 0.266618 | 7.3:-6693376 | MS.gene051778:CDS |
| GCTTCAAAGCTTCAAACTTT+GGG | 0.276040 | 7.3:-6694260 | MS.gene051778:CDS |
| TGTAGTTGGAACTGGTGTTT+TGG | 0.282817 | 7.3:-6694222 | MS.gene051778:CDS |
| TTGCGTATTTGGTATTTATT+GGG | 0.311051 | 7.3:-6693365 | MS.gene051778:CDS |
| AGCTTCAAAGCTTCAAACTT+TGG | 0.322711 | 7.3:-6694261 | MS.gene051778:CDS |
| CGGCAATCACGTCGAACATT+GGG | 0.331674 | 7.3:-6693122 | MS.gene051778:CDS |
| AATATCATTGTTACTGTAGT+TGG | 0.346950 | 7.3:-6694236 | MS.gene051778:CDS |
| TTATGTGGTTACATGGCTTT+TGG | 0.362879 | 7.3:-6692946 | MS.gene051778:CDS |
| AAGTAGGAGCATGCAATAAT+AGG | 0.366520 | 7.3:+6694127 | None:intergenic |
| CTTCTACAATCTCATTAATT+GGG | 0.367121 | 7.3:+6692067 | None:intergenic |
| AAACGAAAACCCATCCTCTA+AGG | 0.374336 | 7.3:+6693155 | None:intergenic |
| AGCTAAATTCCCAAAATTGC+TGG | 0.379222 | 7.3:-6693013 | MS.gene051778:CDS |
| TGCTAGTACCAGTTGAAATT+GGG | 0.393945 | 7.3:-6693284 | MS.gene051778:CDS |
| GACCTGGGTTATAGATGCTT+TGG | 0.394530 | 7.3:-6693447 | MS.gene051778:CDS |
| TTAATTGGGTGTAACATGAT+TGG | 0.395355 | 7.3:+6692081 | None:intergenic |
| GGTTGGGTTGCTGGCTCGCT+TGG | 0.405595 | 7.3:-6694173 | MS.gene051778:CDS |
| TTAGTGGAATCAAGATCTTA+TGG | 0.409655 | 7.3:-6693471 | MS.gene051778:CDS |
| GTTGCCATTTGCAGCAGGCA+TGG | 0.411945 | 7.3:-6693097 | MS.gene051778:CDS |
| CTGGTCATCTCTTGCCGTAC+AGG | 0.421828 | 7.3:-6692881 | MS.gene051778:intron |
| TATCCTTCATAGAATTCTCT+AGG | 0.427773 | 7.3:+6693037 | None:intergenic |
| TATAGATGCTTTGGAACATT+CGG | 0.429944 | 7.3:-6693438 | MS.gene051778:CDS |
| TAATTGGGTGTAACATGATT+GGG | 0.432015 | 7.3:+6692082 | None:intergenic |
| ACAGCCATGCCTGCTGCAAA+TGG | 0.444083 | 7.3:+6693093 | None:intergenic |
| ATTGTTACTGTAGTTGGAAC+TGG | 0.462436 | 7.3:-6694230 | MS.gene051778:CDS |
| ATTAAGGGTCACAATGTCTC+TGG | 0.463981 | 7.3:+6692915 | None:intergenic |
| CATGACATCCCAATTTCAAC+TGG | 0.479088 | 7.3:+6693276 | None:intergenic |
| TCGCTTGGTGTTGCTATCGT+TGG | 0.480171 | 7.3:-6694158 | MS.gene051778:CDS |
| AGATGTACGAGTGGCCTTAG+AGG | 0.486364 | 7.3:-6693169 | MS.gene051778:CDS |
| CCAGCTCCTAGGGAGATTAA+GGG | 0.501513 | 7.3:+6692900 | None:intergenic |
| ATGTTATTTGAGTATACTGC+TGG | 0.504345 | 7.3:-6692697 | MS.gene051778:intron |
| GCAAGAGATGACCAGCTCCT+AGG | 0.507015 | 7.3:+6692889 | None:intergenic |
| GGTTTGGTGCAGAGATAAGT+TGG | 0.507286 | 7.3:-6693508 | MS.gene051778:CDS |
| TACGAGTGGCCTTAGAGGAT+GGG | 0.517363 | 7.3:-6693164 | MS.gene051778:CDS |
| CAGTTGAAATTGGGATGTCA+TGG | 0.517566 | 7.3:-6693275 | MS.gene051778:CDS |
| ACGGCAATCACGTCGAACAT+TGG | 0.520931 | 7.3:-6693123 | MS.gene051778:CDS |
| CCCTTAATCTCCCTAGGAGC+TGG | 0.522429 | 7.3:-6692900 | MS.gene051778:CDS |
| CTTCAAAGCTTCAAACTTTG+GGG | 0.529013 | 7.3:-6694259 | MS.gene051778:CDS |
| CAAGAGATGACCAGCTCCTA+GGG | 0.531338 | 7.3:+6692890 | None:intergenic |
| ATCAAGATCTTATGGAGACC+TGG | 0.532309 | 7.3:-6693463 | MS.gene051778:CDS |
| GTACGAGTGGCCTTAGAGGA+TGG | 0.538625 | 7.3:-6693165 | MS.gene051778:CDS |
| GGCATCAGAAGAGCCGTTAG+TGG | 0.542217 | 7.3:-6693487 | MS.gene051778:CDS |
| TGCCCTAGAGAATTCTATGA+AGG | 0.544325 | 7.3:-6693040 | MS.gene051778:CDS |
| TATGAATGTCTTTACCTGTA+CGG | 0.553018 | 7.3:+6692867 | None:intergenic |
| ACCAGCAATCCGAAAAGCAA+AGG | 0.553289 | 7.3:+6694193 | None:intergenic |
| TGGTACTAGCATAAATATGT+AGG | 0.553563 | 7.3:+6693296 | None:intergenic |
| TTATAAATTCTGTCAGATAC+CGG | 0.554125 | 7.3:+6693415 | None:intergenic |
| ATGACAGGTAGGATTGTGCC+TGG | 0.559822 | 7.3:-6692121 | MS.gene051778:intron |
| TTCCAAAGCATCTATAACCC+AGG | 0.563102 | 7.3:+6693445 | None:intergenic |
| CCAGCAATCCGAAAAGCAAA+GGG | 0.563950 | 7.3:+6694194 | None:intergenic |
| ATCCTTCATAGAATTCTCTA+GGG | 0.566292 | 7.3:+6693038 | None:intergenic |
| TGTGTGCAATGTCCTAGCTA+TGG | 0.568520 | 7.3:-6693208 | MS.gene051778:CDS |
| TAAGATCTTGATTCCACTAA+CGG | 0.573803 | 7.3:+6693474 | None:intergenic |
| GACAGGTAGGATTGTGCCTG+GGG | 0.581164 | 7.3:-6692119 | MS.gene051778:intron |
| ATCGTGGTAGCACAATGTGC+AGG | 0.583248 | 7.3:-6693393 | MS.gene051778:CDS |
| GAAATTGGGATGTCATGGAT+AGG | 0.588699 | 7.3:-6693270 | MS.gene051778:CDS |
| AGCTATGGGAATTGTAGTGA+AGG | 0.588848 | 7.3:-6693193 | MS.gene051778:CDS |
| TCAAGATCTTATGGAGACCT+GGG | 0.593639 | 7.3:-6693462 | MS.gene051778:CDS |
| TTGTGACCCTTAATCTCCCT+AGG | 0.597351 | 7.3:-6692906 | MS.gene051778:CDS |
| TGACAGGTAGGATTGTGCCT+GGG | 0.602408 | 7.3:-6692120 | MS.gene051778:intron |
| GATGCTTTGGAACATTCGGC+CGG | 0.602453 | 7.3:-6693434 | MS.gene051778:CDS |
| TCACTACAATTCCCATAGCT+AGG | 0.603325 | 7.3:+6693196 | None:intergenic |
| GGCAATCACGTCGAACATTG+GGG | 0.609772 | 7.3:-6693121 | MS.gene051778:CDS |
| TGAACAAAGAGCATGAGAAG+AGG | 0.619787 | 7.3:+6692724 | None:intergenic |
| GGAATGTGAACATAAGCCCC+AGG | 0.620030 | 7.3:+6692103 | None:intergenic |
| TCTGACAGAATTTATAATCG+TGG | 0.625652 | 7.3:-6693409 | MS.gene051778:CDS |
| TACTAGCATAAATATGTAGG+AGG | 0.630914 | 7.3:+6693299 | None:intergenic |
| GTGTGCAATGTCCTAGCTAT+GGG | 0.634606 | 7.3:-6693207 | MS.gene051778:CDS |
| AATATGTAGGAGGCAAGCGA+TGG | 0.653012 | 7.3:+6693309 | None:intergenic |
| CAATCACGTCGAACATTGGG+GGG | 0.667136 | 7.3:-6693119 | MS.gene051778:CDS |
| AGCAGTATACTCAAATAACA+TGG | 0.672313 | 7.3:+6692699 | None:intergenic |
| AGTGAAGGAAGATGTACGAG+TGG | 0.702478 | 7.3:-6693178 | MS.gene051778:CDS |
| GCAATCACGTCGAACATTGG+GGG | 0.711818 | 7.3:-6693120 | MS.gene051778:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAGTAAAAAAATAAAA+AGG | + | chr7.3:6692532-6692551 | None:intergenic | 10.0% |
| !!! | TACTACTATTCTTTTTTATT+GGG | - | chr7.3:6692543-6692562 | MS.gene051778:intron | 15.0% |
| !!! | TTACTACTATTCTTTTTTAT+TGG | - | chr7.3:6692542-6692561 | MS.gene051778:intron | 15.0% |
| !! | TAGATTATTCCATTACTAAA+AGG | - | chr7.3:6692606-6692625 | MS.gene051778:intron | 20.0% |
| !!! | AATTTCGTTATTTTTCCTAT+TGG | - | chr7.3:6694201-6694220 | MS.gene051778:CDS | 20.0% |
| !!! | ACATTAACATCTCAAATTTT+AGG | - | chr7.3:6694106-6694125 | MS.gene051778:intron | 20.0% |
| !!! | ACTACTATTCTTTTTTATTG+GGG | - | chr7.3:6692544-6692563 | MS.gene051778:intron | 20.0% |
| !!! | CATTAACATCTCAAATTTTA+GGG | - | chr7.3:6694107-6694126 | MS.gene051778:intron | 20.0% |
| ! | AAATTTCCAATGCACATAAT+TGG | + | chr7.3:6693987-6694006 | None:intergenic | 25.0% |
| ! | AACAAAATATTATGAACTCC+TGG | + | chr7.3:6694169-6694188 | None:intergenic | 25.0% |
| ! | AATATCATTGTTACTGTAGT+TGG | - | chr7.3:6692141-6692160 | MS.gene051778:intron | 25.0% |
| ! | AATTTATCCTTAGATGTCTA+CGG | - | chr7.3:6694022-6694041 | MS.gene051778:intron | 25.0% |
| ! | GATTCTGTATTCCAAAAATA+TGG | - | chr7.3:6693044-6693063 | MS.gene051778:CDS | 25.0% |
| ! | GTGAAAGCAAAATATATACA+TGG | + | chr7.3:6693546-6693565 | None:intergenic | 25.0% |
| ! | TATAACATTTGTGAAAGTAG+TGG | + | chr7.3:6692501-6692520 | None:intergenic | 25.0% |
| ! | TGGAAATTTATTATGTGCAT+TGG | - | chr7.3:6693998-6694017 | MS.gene051778:intron | 25.0% |
| ! | TGGAATAATCTAATCTAAGT+CGG | + | chr7.3:6692598-6692617 | None:intergenic | 25.0% |
| ! | TGTTCCGTATTACTTTAAAT+TGG | + | chr7.3:6692634-6692653 | None:intergenic | 25.0% |
| ! | TTATAAATTCTGTCAGATAC+CGG | + | chr7.3:6692965-6692984 | None:intergenic | 25.0% |
| ! | TTGCGTATTTGGTATTTATT+GGG | - | chr7.3:6693012-6693031 | MS.gene051778:CDS | 25.0% |
| !! | GGAACCAATTTAAAGTAATA+CGG | - | chr7.3:6692627-6692646 | MS.gene051778:intron | 25.0% |
| !! | TTTGTTGTAGACATGTATAA+AGG | + | chr7.3:6694077-6694096 | None:intergenic | 25.0% |
| !!! | AAATTGGTTCCTTTTAGTAA+TGG | + | chr7.3:6692618-6692637 | None:intergenic | 25.0% |
| !!! | ATTTTTGGAATACAGAATCA+AGG | + | chr7.3:6693043-6693062 | None:intergenic | 25.0% |
| !!! | GATTTTGATTTCATTGATAC+AGG | - | chr7.3:6692848-6692867 | MS.gene051778:intron | 25.0% |
| AAATGCATCACGCATAATAA+TGG | + | chr7.3:6692678-6692697 | None:intergenic | 30.0% | |
| ACATCAGCAAAAATGCTAAA+TGG | + | chr7.3:6693152-6693171 | None:intergenic | 30.0% | |
| AGCAGTATACTCAAATAACA+TGG | + | chr7.3:6693681-6693700 | None:intergenic | 30.0% | |
| ATCCTTCATAGAATTCTCTA+GGG | + | chr7.3:6693342-6693361 | None:intergenic | 30.0% | |
| ATGAGCATAGAATTTGATTC+AGG | - | chr7.3:6692371-6692390 | MS.gene051778:intron | 30.0% | |
| ATTCAGGTAGGTTTCAATAT+TGG | - | chr7.3:6692387-6692406 | MS.gene051778:intron | 30.0% | |
| GTTGCGTATTTGGTATTTAT+TGG | - | chr7.3:6693011-6693030 | MS.gene051778:CDS | 30.0% | |
| TAAGATCTTGATTCCACTAA+CGG | + | chr7.3:6692906-6692925 | None:intergenic | 30.0% | |
| TAATTGGGTGTAACATGATT+GGG | + | chr7.3:6694298-6694317 | None:intergenic | 30.0% | |
| TACTAGCATAAATATGTAGG+AGG | + | chr7.3:6693081-6693100 | None:intergenic | 30.0% | |
| TATCCTTCATAGAATTCTCT+AGG | + | chr7.3:6693343-6693362 | None:intergenic | 30.0% | |
| TATGAATGTCTTTACCTGTA+CGG | + | chr7.3:6693513-6693532 | None:intergenic | 30.0% | |
| TCTGACAGAATTTATAATCG+TGG | - | chr7.3:6692968-6692987 | MS.gene051778:CDS | 30.0% | |
| TGATTTCATTGATACAGGTT+TGG | - | chr7.3:6692853-6692872 | MS.gene051778:intron | 30.0% | |
| TGGTACTAGCATAAATATGT+AGG | + | chr7.3:6693084-6693103 | None:intergenic | 30.0% | |
| TGTAAAACAGATTAACTGAC+AGG | + | chr7.3:6693790-6693809 | None:intergenic | 30.0% | |
| TTAATTGGGTGTAACATGAT+TGG | + | chr7.3:6694299-6694318 | None:intergenic | 30.0% | |
| TTAGTGGAATCAAGATCTTA+TGG | - | chr7.3:6692906-6692925 | MS.gene051778:CDS | 30.0% | |
| TTCATTATATGCAGGGAATT+CGG | - | chr7.3:6692800-6692819 | MS.gene051778:intron | 30.0% | |
| ! | AACTATATGGTCTTCACTTT+TGG | - | chr7.3:6693743-6693762 | MS.gene051778:intron | 30.0% |
| ! | ACACTCGTATACATTCTTTT+TGG | - | chr7.3:6693407-6693426 | MS.gene051778:CDS | 30.0% |
| ! | ATGTTATTTGAGTATACTGC+TGG | - | chr7.3:6693680-6693699 | MS.gene051778:intron | 30.0% |
| ! | CACTCGTATACATTCTTTTT+GGG | - | chr7.3:6693408-6693427 | MS.gene051778:CDS | 30.0% |
| ! | GTTTGGTTGCTTTAACTATA+TGG | - | chr7.3:6693730-6693749 | MS.gene051778:intron | 30.0% |
| ! | TTTATATGATGATGACAGGT+AGG | - | chr7.3:6694245-6694264 | MS.gene051778:CDS | 30.0% |
| !! | ACTATATGGTCTTCACTTTT+GGG | - | chr7.3:6693744-6693763 | MS.gene051778:intron | 30.0% |
| !! | CTCTTTTGGAAGATAACAAA+GGG | + | chr7.3:6692098-6692117 | None:intergenic | 30.0% |
| !! | GCATTTTATATGATGATGAC+AGG | - | chr7.3:6694241-6694260 | MS.gene051778:CDS | 30.0% |
| !! | TATAGATGCTTTGGAACATT+CGG | - | chr7.3:6692939-6692958 | MS.gene051778:CDS | 30.0% |
| !! | TCTTTTGGAAGATAACAAAG+GGG | + | chr7.3:6692097-6692116 | None:intergenic | 30.0% |
| !!! | ATGGCTGTTTTTTGTTTTGA+GGG | - | chr7.3:6693299-6693318 | MS.gene051778:CDS | 30.0% |
| !!! | TACATTCTTTTTGGGTTATG+TGG | - | chr7.3:6693416-6693435 | MS.gene051778:CDS | 30.0% |
| AGCTAAATTCCCAAAATTGC+TGG | - | chr7.3:6693364-6693383 | MS.gene051778:CDS | 35.0% | |
| AGCTTCAAAGCTTCAAACTT+TGG | - | chr7.3:6692116-6692135 | MS.gene051778:CDS | 35.0% | |
| ATATTATGAACTCCTGGCAA+TGG | + | chr7.3:6694163-6694182 | None:intergenic | 35.0% | |
| ATGCTAGTACCAGTTGAAAT+TGG | - | chr7.3:6693092-6693111 | MS.gene051778:CDS | 35.0% | |
| ATTGTTACTGTAGTTGGAAC+TGG | - | chr7.3:6692147-6692166 | MS.gene051778:intron | 35.0% | |
| CGTGATGCATTTATTGATCT+TGG | - | chr7.3:6692686-6692705 | MS.gene051778:intron | 35.0% | |
| CTTCAAAGCTTCAAACTTTG+GGG | - | chr7.3:6692118-6692137 | MS.gene051778:intron | 35.0% | |
| GAAGTCAAACATTGACCAAT+AGG | + | chr7.3:6694219-6694238 | None:intergenic | 35.0% | |
| GCATAGAATTTGATTCAGGT+AGG | - | chr7.3:6692375-6692394 | MS.gene051778:intron | 35.0% | |
| GCTTCAAAGCTTCAAACTTT+GGG | - | chr7.3:6692117-6692136 | MS.gene051778:CDS | 35.0% | |
| GTAGCACATATTATGTGCAT+TGG | - | chr7.3:6693978-6693997 | MS.gene051778:intron | 35.0% | |
| TCCCTGCATATAATGAAACT+CGG | + | chr7.3:6692797-6692816 | None:intergenic | 35.0% | |
| TCCGAGTTTCATTATATGCA+GGG | - | chr7.3:6692793-6692812 | MS.gene051778:intron | 35.0% | |
| TGCTAGTACCAGTTGAAATT+GGG | - | chr7.3:6693093-6693112 | MS.gene051778:CDS | 35.0% | |
| ! | AAGTAGGAGCATGCAATAAT+AGG | + | chr7.3:6692253-6692272 | None:intergenic | 35.0% |
| ! | ATGGGTTTTCGTTTAGAGAA+AGG | - | chr7.3:6693231-6693250 | MS.gene051778:CDS | 35.0% |
| ! | GTTTTCGTTTAGAGAAAGGA+CGG | - | chr7.3:6693235-6693254 | MS.gene051778:CDS | 35.0% |
| ! | TTATGTGGTTACATGGCTTT+TGG | - | chr7.3:6693431-6693450 | MS.gene051778:CDS | 35.0% |
| !! | GCTCTTTTGGAAGATAACAA+AGG | + | chr7.3:6692099-6692118 | None:intergenic | 35.0% |
| !! | TTTGGGTTGTATGTGTCAAT+TGG | - | chr7.3:6693761-6693780 | MS.gene051778:intron | 35.0% |
| !!! | CATGGCTGTTTTTTGTTTTG+AGG | - | chr7.3:6693298-6693317 | MS.gene051778:CDS | 35.0% |
| !!! | GTTTTTTGTTTTGAGGGGTT+TGG | - | chr7.3:6693305-6693324 | MS.gene051778:CDS | 35.0% |
| !!! | TGGCTGTTTTTTGTTTTGAG+GGG | - | chr7.3:6693300-6693319 | MS.gene051778:CDS | 35.0% |
| !!! | TTGAAGCTTTGAAGCTCTTT+TGG | + | chr7.3:6692112-6692131 | None:intergenic | 35.0% |
| !!! | TTTTGGGTTATGTGGTTACA+TGG | - | chr7.3:6693424-6693443 | MS.gene051778:CDS | 35.0% |
| AAACGAAAACCCATCCTCTA+AGG | + | chr7.3:6693225-6693244 | None:intergenic | 40.0% | |
| AGCTATGGGAATTGTAGTGA+AGG | - | chr7.3:6693184-6693203 | MS.gene051778:CDS | 40.0% | |
| AGTTGTGTATGTCCTGCTTT+GGG | - | chr7.3:6693956-6693975 | MS.gene051778:intron | 40.0% | |
| ATCAAGATCTTATGGAGACC+TGG | - | chr7.3:6692914-6692933 | MS.gene051778:CDS | 40.0% | |
| ATTAAGGGTCACAATGTCTC+TGG | + | chr7.3:6693465-6693484 | None:intergenic | 40.0% | |
| CAGTTGAAATTGGGATGTCA+TGG | - | chr7.3:6693102-6693121 | MS.gene051778:CDS | 40.0% | |
| CATGACATCCCAATTTCAAC+TGG | + | chr7.3:6693104-6693123 | None:intergenic | 40.0% | |
| CTCCGAGTTTCATTATATGC+AGG | - | chr7.3:6692792-6692811 | MS.gene051778:intron | 40.0% | |
| GAAATTGGGATGTCATGGAT+AGG | - | chr7.3:6693107-6693126 | MS.gene051778:CDS | 40.0% | |
| GCATCACGCATAATAATGGT+AGG | + | chr7.3:6692674-6692693 | None:intergenic | 40.0% | |
| GGCAAACCAATTATGTGCAT+TGG | - | chr7.3:6694043-6694062 | MS.gene051778:intron | 40.0% | |
| TAATATGTGCTACCCAAAGC+AGG | + | chr7.3:6693971-6693990 | None:intergenic | 40.0% | |
| TAGAAAGATGACCCACAAGT+AGG | + | chr7.3:6692269-6692288 | None:intergenic | 40.0% | |
| TAGTTGTGTATGTCCTGCTT+TGG | - | chr7.3:6693955-6693974 | MS.gene051778:intron | 40.0% | |
| TATTGCATGCTCCTACTTGT+GGG | - | chr7.3:6692255-6692274 | MS.gene051778:intron | 40.0% | |
| TCAAGATCTTATGGAGACCT+GGG | - | chr7.3:6692915-6692934 | MS.gene051778:CDS | 40.0% | |
| TCACTACAATTCCCATAGCT+AGG | + | chr7.3:6693184-6693203 | None:intergenic | 40.0% | |
| TGCCCTAGAGAATTCTATGA+AGG | - | chr7.3:6693337-6693356 | MS.gene051778:CDS | 40.0% | |
| TTATTGCATGCTCCTACTTG+TGG | - | chr7.3:6692254-6692273 | MS.gene051778:intron | 40.0% | |
| TTGTCTATGTGGTCACATGT+TGG | - | chr7.3:6693846-6693865 | MS.gene051778:intron | 40.0% | |
| ! | AAAGTCTGAGCCAGCAATTT+TGG | + | chr7.3:6693377-6693396 | None:intergenic | 40.0% |
| ! | AAGTCTGAGCCAGCAATTTT+GGG | + | chr7.3:6693376-6693395 | None:intergenic | 40.0% |
| ! | CAAGCGATGGTCCATATTTT+TGG | + | chr7.3:6693058-6693077 | None:intergenic | 40.0% |
| ! | GTAGTTGGAACTGGTGTTTT+GGG | - | chr7.3:6692156-6692175 | MS.gene051778:intron | 40.0% |
| ! | TGAACAAAGAGCATGAGAAG+AGG | + | chr7.3:6693656-6693675 | None:intergenic | 40.0% |
| ! | TGTAGTTGGAACTGGTGTTT+TGG | - | chr7.3:6692155-6692174 | MS.gene051778:intron | 40.0% |
| ! | TGTTGTGTACTTCACTGACT+TGG | - | chr7.3:6692571-6692590 | MS.gene051778:intron | 40.0% |
| ! | TTCCAAAGCATCTATAACCC+AGG | + | chr7.3:6692935-6692954 | None:intergenic | 40.0% |
| !! | CTCAGTCATCGATTTCAGAT+CGG | + | chr7.3:6692754-6692773 | None:intergenic | 40.0% |
| !! | TGGGTTTACCCTTTGCTTTT+CGG | - | chr7.3:6692175-6692194 | MS.gene051778:intron | 40.0% |
| !! | TTGAAGGTGATGATGGTGTT+TGG | - | chr7.3:6693713-6693732 | MS.gene051778:intron | 40.0% |
| AATATGTAGGAGGCAAGCGA+TGG | + | chr7.3:6693071-6693090 | None:intergenic | 45.0% | |
| ACCAGCAATCCGAAAAGCAA+AGG | + | chr7.3:6692187-6692206 | None:intergenic | 45.0% | |
| ACGCTTCGTGGACAGAATTT+AGG | + | chr7.3:6693822-6693841 | None:intergenic | 45.0% | |
| AGTGAAGGAAGATGTACGAG+TGG | - | chr7.3:6693199-6693218 | MS.gene051778:CDS | 45.0% | |
| ATAGACAAACACACGCTTCG+TGG | + | chr7.3:6693834-6693853 | None:intergenic | 45.0% | |
| ATGAGAAAGCTTCCATTGCC+AGG | - | chr7.3:6694148-6694167 | MS.gene051778:CDS | 45.0% | |
| CATCATCACCTTCAAGCACT+AGG | + | chr7.3:6693708-6693727 | None:intergenic | 45.0% | |
| CCAGCAATCCGAAAAGCAAA+GGG | + | chr7.3:6692186-6692205 | None:intergenic | 45.0% | |
| CTAGTGCTTGAAGGTGATGA+TGG | - | chr7.3:6693706-6693725 | MS.gene051778:intron | 45.0% | |
| GAACGTGCTTGTAAGCATGT+TGG | + | chr7.3:6693899-6693918 | None:intergenic | 45.0% | |
| GAAGCGTGTGTTTGTCTATG+TGG | - | chr7.3:6693835-6693854 | MS.gene051778:intron | 45.0% | |
| GACCTGGGTTATAGATGCTT+TGG | - | chr7.3:6692930-6692949 | MS.gene051778:CDS | 45.0% | |
| GGCTATAGCTCAGATAGCTT+TGG | - | chr7.3:6692408-6692427 | MS.gene051778:intron | 45.0% | |
| GTGTGCAATGTCCTAGCTAT+GGG | - | chr7.3:6693170-6693189 | MS.gene051778:CDS | 45.0% | |
| TGCAGGATCTGTTGCGTATT+TGG | - | chr7.3:6693001-6693020 | MS.gene051778:CDS | 45.0% | |
| TGTGTGCAATGTCCTAGCTA+TGG | - | chr7.3:6693169-6693188 | MS.gene051778:CDS | 45.0% | |
| TTGTGACCCTTAATCTCCCT+AGG | - | chr7.3:6693471-6693490 | MS.gene051778:CDS | 45.0% | |
| ! | GTTCTCGAGTTGTCATTGCA+TGG | - | chr7.3:6692822-6692841 | MS.gene051778:intron | 45.0% |
| ! | TGGTTTGCCGTAGACATCTA+AGG | + | chr7.3:6694032-6694051 | None:intergenic | 45.0% |
| !! | GGTTTGGTGCAGAGATAAGT+TGG | - | chr7.3:6692869-6692888 | MS.gene051778:intron | 45.0% |
| !! | TGCTTTTCGGATTGCTGGTT+GGG | - | chr7.3:6692188-6692207 | MS.gene051778:intron | 45.0% |
| !! | TTGCTTTTCGGATTGCTGGT+TGG | - | chr7.3:6692187-6692206 | MS.gene051778:intron | 45.0% |
| !!! | TTGCTGGCTCAGACTTTTAG+TGG | - | chr7.3:6693380-6693399 | MS.gene051778:CDS | 45.0% |
| ACCAGCTCCTAGGGAGATTA+AGG | + | chr7.3:6693481-6693500 | None:intergenic | 50.0% | |
| ACGGCAATCACGTCGAACAT+TGG | - | chr7.3:6693254-6693273 | MS.gene051778:CDS | 50.0% | |
| ATCGTGGTAGCACAATGTGC+AGG | - | chr7.3:6692984-6693003 | MS.gene051778:CDS | 50.0% | |
| ATGACAGGTAGGATTGTGCC+TGG | - | chr7.3:6694256-6694275 | MS.gene051778:CDS | 50.0% | |
| CAAGAGATGACCAGCTCCTA+GGG | + | chr7.3:6693490-6693509 | None:intergenic | 50.0% | |
| CAATCACGTCGAACATTGGG+GGG | - | chr7.3:6693258-6693277 | MS.gene051778:CDS | 50.0% | |
| CCAGCTCCTAGGGAGATTAA+GGG | + | chr7.3:6693480-6693499 | None:intergenic | 50.0% | |
| CGGCAATCACGTCGAACATT+GGG | - | chr7.3:6693255-6693274 | MS.gene051778:CDS | 50.0% | |
| GCAATCACGTCGAACATTGG+GGG | - | chr7.3:6693257-6693276 | MS.gene051778:CDS | 50.0% | |
| GGAATGTGAACATAAGCCCC+AGG | + | chr7.3:6694277-6694296 | None:intergenic | 50.0% | |
| GGCAATCACGTCGAACATTG+GGG | - | chr7.3:6693256-6693275 | MS.gene051778:CDS | 50.0% | |
| TGACAGGTAGGATTGTGCCT+GGG | - | chr7.3:6694257-6694276 | MS.gene051778:CDS | 50.0% | |
| TGCTGGTACCTAGTGCTTGA+AGG | - | chr7.3:6693697-6693716 | MS.gene051778:intron | 50.0% | |
| ! | AGATGTACGAGTGGCCTTAG+AGG | - | chr7.3:6693208-6693227 | MS.gene051778:CDS | 50.0% |
| ! | TACGAGTGGCCTTAGAGGAT+GGG | - | chr7.3:6693213-6693232 | MS.gene051778:CDS | 50.0% |
| !! | CCCTTTGCTTTTCGGATTGC+TGG | - | chr7.3:6692183-6692202 | MS.gene051778:intron | 50.0% |
| !! | GATGCTTTGGAACATTCGGC+CGG | - | chr7.3:6692943-6692962 | MS.gene051778:CDS | 50.0% |
| !! | TCGCTTGGTGTTGCTATCGT+TGG | - | chr7.3:6692219-6692238 | MS.gene051778:intron | 50.0% |
| ACAGCCATGCCTGCTGCAAA+TGG | + | chr7.3:6693287-6693306 | None:intergenic | 55.0% | |
| CCCTTAATCTCCCTAGGAGC+TGG | - | chr7.3:6693477-6693496 | MS.gene051778:CDS | 55.0% | |
| CTGGTCATCTCTTGCCGTAC+AGG | - | chr7.3:6693496-6693515 | MS.gene051778:CDS | 55.0% | |
| GACAGGTAGGATTGTGCCTG+GGG | - | chr7.3:6694258-6694277 | MS.gene051778:CDS | 55.0% | |
| GCAAGAGATGACCAGCTCCT+AGG | + | chr7.3:6693491-6693510 | None:intergenic | 55.0% | |
| GGCATCAGAAGAGCCGTTAG+TGG | - | chr7.3:6692890-6692909 | MS.gene051778:CDS | 55.0% | |
| TTGGACACGAAGCCTTGCAG+TGG | - | chr7.3:6693865-6693884 | MS.gene051778:intron | 55.0% | |
| TTGGACTCAACGCCACTGCA+AGG | + | chr7.3:6693880-6693899 | None:intergenic | 55.0% | |
| ! | GTACGAGTGGCCTTAGAGGA+TGG | - | chr7.3:6693212-6693231 | MS.gene051778:CDS | 55.0% |
| ! | GTTGCCATTTGCAGCAGGCA+TGG | - | chr7.3:6693280-6693299 | MS.gene051778:CDS | 55.0% |
| ! | CGGATTGCTGGTTGGGTTGC+TGG | - | chr7.3:6692195-6692214 | MS.gene051778:intron | 60.0% |
| ! | GGGGGGTTGCCATTTGCAGC+AGG | - | chr7.3:6693275-6693294 | MS.gene051778:CDS | 65.0% |
| !! | GGTTGGGTTGCTGGCTCGCT+TGG | - | chr7.3:6692204-6692223 | MS.gene051778:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6692081 | 6694318 | 6692081 | ID=MS.gene051778 |
| chr7.3 | mRNA | 6692081 | 6694318 | 6692081 | ID=MS.gene051778.t1;Parent=MS.gene051778 |
| chr7.3 | exon | 6694127 | 6694318 | 6694127 | ID=MS.gene051778.t1.exon1;Parent=MS.gene051778.t1 |
| chr7.3 | CDS | 6694127 | 6694318 | 6694127 | ID=cds.MS.gene051778.t1;Parent=MS.gene051778.t1 |
| chr7.3 | exon | 6692882 | 6693529 | 6692882 | ID=MS.gene051778.t1.exon2;Parent=MS.gene051778.t1 |
| chr7.3 | CDS | 6692882 | 6693529 | 6692882 | ID=cds.MS.gene051778.t1;Parent=MS.gene051778.t1 |
| chr7.3 | exon | 6692698 | 6692791 | 6692698 | ID=MS.gene051778.t1.exon3;Parent=MS.gene051778.t1 |
| chr7.3 | CDS | 6692698 | 6692791 | 6692698 | ID=cds.MS.gene051778.t1;Parent=MS.gene051778.t1 |
| chr7.3 | exon | 6692081 | 6692136 | 6692081 | ID=MS.gene051778.t1.exon4;Parent=MS.gene051778.t1 |
| chr7.3 | CDS | 6692081 | 6692136 | 6692081 | ID=cds.MS.gene051778.t1;Parent=MS.gene051778.t1 |
| Gene Sequence |
| Protein sequence |
