Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66859.t1 | XP_003605992.2 | 99.6 | 852 | 3 | 0 | 1 | 852 | 142 | 993 | 0.00E+00 | 1638.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66859.t1 | Q9SHS7 | 92.2 | 856 | 61 | 4 | 1 | 852 | 147 | 1000 | 0.0e+00 | 1518.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66859.t1 | G7JET4 | 99.6 | 852 | 3 | 0 | 1 | 852 | 142 | 993 | 0.0e+00 | 1638.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene66859 | 0.824293 | 8.73E-54 | -1.69E-46 |
| MS.gene050084 | MS.gene66859 | 0.845178 | 4.77E-59 | -1.69E-46 |
| MS.gene050085 | MS.gene66859 | 0.846091 | 2.70E-59 | -1.69E-46 |
| MS.gene050213 | MS.gene66859 | 0.816462 | 5.46E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene66859 | 0.847664 | 1.00E-59 | -1.69E-46 |
| MS.gene050361 | MS.gene66859 | 0.824049 | 9.96E-54 | -1.69E-46 |
| MS.gene050414 | MS.gene66859 | 0.844992 | 5.36E-59 | -1.69E-46 |
| MS.gene050646 | MS.gene66859 | 0.855852 | 4.78E-62 | -1.69E-46 |
| MS.gene050654 | MS.gene66859 | 0.845215 | 4.67E-59 | -1.69E-46 |
| MS.gene050931 | MS.gene66859 | 0.81122 | 7.81E-51 | -1.69E-46 |
| MS.gene051043 | MS.gene66859 | 0.80508 | 1.59E-49 | -1.69E-46 |
| MS.gene051184 | MS.gene66859 | 0.814338 | 1.62E-51 | -1.69E-46 |
| MS.gene051209 | MS.gene66859 | 0.814926 | 1.20E-51 | -1.69E-46 |
| MS.gene051381 | MS.gene66859 | 0.803353 | 3.63E-49 | -1.69E-46 |
| MS.gene051778 | MS.gene66859 | 0.811913 | 5.52E-51 | -1.69E-46 |
| MS.gene052242 | MS.gene66859 | -0.822412 | 2.40E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene66859 | 0.818494 | 1.90E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene66859 | 0.825293 | 5.07E-54 | -1.69E-46 |
| MS.gene052776 | MS.gene66859 | 0.822616 | 2.15E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene66859 | 0.816227 | 6.16E-52 | -1.69E-46 |
| MS.gene053143 | MS.gene66859 | 0.803992 | 2.67E-49 | -1.69E-46 |
| MS.gene053486 | MS.gene66859 | 0.844255 | 8.47E-59 | -1.69E-46 |
| MS.gene053726 | MS.gene66859 | 0.840797 | 7.00E-58 | -1.69E-46 |
| MS.gene056045 | MS.gene66859 | 0.822922 | 1.83E-53 | -1.69E-46 |
| MS.gene056097 | MS.gene66859 | 0.884088 | 2.58E-71 | -1.69E-46 |
| MS.gene056181 | MS.gene66859 | 0.816763 | 4.68E-52 | -1.69E-46 |
| MS.gene056578 | MS.gene66859 | 0.819935 | 8.94E-53 | -1.69E-46 |
| MS.gene057174 | MS.gene66859 | 0.812041 | 5.18E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene66859 | 0.809092 | 2.24E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene66859 | 0.816349 | 5.79E-52 | -1.69E-46 |
| MS.gene058638 | MS.gene66859 | 0.816745 | 4.72E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene66859 | 0.806345 | 8.61E-50 | -1.69E-46 |
| MS.gene059007 | MS.gene66859 | 0.904131 | 1.69E-79 | -1.69E-46 |
| MS.gene060563 | MS.gene66859 | 0.838741 | 2.40E-57 | -1.69E-46 |
| MS.gene060933 | MS.gene66859 | 0.848413 | 6.23E-60 | -1.69E-46 |
| MS.gene060937 | MS.gene66859 | 0.812098 | 5.03E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 275 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCAGCAGTTGCACTTTC+TGG | 0.074910 | 4.3:+55639815 | None:intergenic |
| AGGGCACCAATTAAAATATT+TGG | 0.147759 | 4.3:-55639047 | MS.gene66859:CDS |
| TGACGTTCTGGCGAAGTTTC+TGG | 0.183902 | 4.3:+55635980 | None:intergenic |
| AGAGACAAATATACCTTCTT+TGG | 0.185188 | 4.3:+55639755 | None:intergenic |
| AGCCTGATTCCACCAGAATT+TGG | 0.192994 | 4.3:+55640044 | None:intergenic |
| GGATAAACCGTCTGTTTAAT+TGG | 0.210498 | 4.3:-55637960 | MS.gene66859:CDS |
| GTGATTTACATGGGCAGTTT+GGG | 0.211414 | 4.3:-55639025 | MS.gene66859:CDS |
| GGTCCAGGGTTAGTTACTTT+TGG | 0.218224 | 4.3:-55637653 | MS.gene66859:CDS |
| TGCTGATGGTGCAGTTGTTT+TGG | 0.234469 | 4.3:-55640897 | MS.gene66859:CDS |
| TGCTGGGGCGATATTAGTTT+TGG | 0.237880 | 4.3:-55636059 | MS.gene66859:CDS |
| CACTGAAAATGCCTTGCTTC+AGG | 0.242308 | 4.3:-55640825 | MS.gene66859:CDS |
| GATCCTGCTTCCATTGTAAT+AGG | 0.263911 | 4.3:+55637838 | None:intergenic |
| GAATTTGGGCCTCCAGATTC+AGG | 0.267505 | 4.3:+55640059 | None:intergenic |
| ACTCAATTCGAAAACCAAAA+AGG | 0.280052 | 4.3:+55638114 | None:intergenic |
| AAGTCTTCTGCTTGCTTTGA+AGG | 0.285629 | 4.3:-55638284 | MS.gene66859:intron |
| ACCTTATGAATGGCGCAAAT+TGG | 0.297374 | 4.3:-55645051 | MS.gene66859:CDS |
| GGAGGCGGGCCCTCTCCTTC+TGG | 0.300169 | 4.3:+55645026 | None:intergenic |
| CATGTGTCTGGTGGGGCTCT+TGG | 0.301154 | 4.3:-55642504 | MS.gene66859:CDS |
| ATGCGCCTCTTTGACGAGTA+TGG | 0.303119 | 4.3:-55638996 | MS.gene66859:CDS |
| GGTGATTTACATGGGCAGTT+TGG | 0.308128 | 4.3:-55639026 | MS.gene66859:CDS |
| GCCTGATTCCACCAGAATTT+GGG | 0.308521 | 4.3:+55640045 | None:intergenic |
| TTATGTAGAGTTGGTGTTCC+TGG | 0.310667 | 4.3:-55645295 | MS.gene66859:intron |
| CGTATTAAATGAATATTGTT+TGG | 0.311742 | 4.3:+55638167 | None:intergenic |
| GGTGTTCCTGGGCCTGGACC+AGG | 0.320390 | 4.3:-55645283 | MS.gene66859:CDS |
| TAATGCAGAATAACTCCTTT+TGG | 0.322403 | 4.3:-55645631 | MS.gene66859:intron |
| GAATCTGGAGGCCCAAATTC+TGG | 0.332172 | 4.3:-55640056 | MS.gene66859:CDS |
| GGGAACGATGGTAGTTATTC+AGG | 0.336338 | 4.3:-55645566 | MS.gene66859:intron |
| GCAGAAGACTTATAGTTTCC+AGG | 0.339335 | 4.3:+55638296 | None:intergenic |
| TGGCAACATGTGCAGCCCTT+GGG | 0.340626 | 4.3:+55645596 | None:intergenic |
| TAGAGTTGGTCCGGCGTTGC+AGG | 0.340640 | 4.3:-55641866 | MS.gene66859:CDS |
| GCACTGTATCTACCCGTTCT+TGG | 0.350441 | 4.3:+55641915 | None:intergenic |
| CAGCCACTTGCCAGTGCATA+TGG | 0.355945 | 4.3:-55642710 | MS.gene66859:CDS |
| TTATGCTGCAGGAATCTTGC+TGG | 0.359210 | 4.3:-55641080 | MS.gene66859:intron |
| CATTAATATCTGCAGCTTCA+TGG | 0.365494 | 4.3:+55638138 | None:intergenic |
| AGGTTTGGCAGCTGTGTCTA+AGG | 0.367352 | 4.3:+55645070 | None:intergenic |
| ATGATGTCTTGACAAATAAA+TGG | 0.369720 | 4.3:-55645751 | MS.gene66859:CDS |
| ATTTGGCCTGCAGGTTTAGC+TGG | 0.370769 | 4.3:-55645797 | None:intergenic |
| TCCATTCTCTTGCCGTGCCT+TGG | 0.370864 | 4.3:+55640157 | None:intergenic |
| TCCAATTTGCGCCATTCATA+AGG | 0.372311 | 4.3:+55645050 | None:intergenic |
| TCCTAGGAGATTATGTTGAT+AGG | 0.374773 | 4.3:-55638330 | MS.gene66859:CDS |
| GACGGGCTTCTTCTGCTTTG+TGG | 0.378371 | 4.3:-55643423 | MS.gene66859:CDS |
| AGGGTGAGAGAGATGGAATT+TGG | 0.383284 | 4.3:-55637993 | MS.gene66859:CDS |
| GGTAATGGATGAATCAGTTT+AGG | 0.384582 | 4.3:+55636016 | None:intergenic |
| AACTGGTGGTTTCCAGCCAC+GGG | 0.386044 | 4.3:+55639163 | None:intergenic |
| GAGACAAATATACCTTCTTT+GGG | 0.386185 | 4.3:+55639756 | None:intergenic |
| GTGTCTGGTGGGGCTCTTGG+TGG | 0.388633 | 4.3:-55642501 | MS.gene66859:CDS |
| TGGACACTGCTGCTGGTGTT+TGG | 0.389645 | 4.3:-55641965 | MS.gene66859:CDS |
| GCAGAGACTGGTGGAGCATT+AGG | 0.392732 | 4.3:-55639905 | MS.gene66859:CDS |
| GAAGGCAGACGGGTCAGTTA+TGG | 0.394505 | 4.3:-55639842 | MS.gene66859:CDS |
| TGTGCAGCCCTTGGGGTTGG+AGG | 0.395369 | 4.3:+55645604 | None:intergenic |
| TTCTTCTGCTTTGTGGAGGG+AGG | 0.402008 | 4.3:-55643416 | MS.gene66859:CDS |
| TAGCAAAGGAGTTGAGTATC+TGG | 0.402168 | 4.3:-55640231 | MS.gene66859:CDS |
| ACTGAAAATGCCTTGCTTCA+GGG | 0.402168 | 4.3:-55640824 | MS.gene66859:CDS |
| GATATGGATTTGTTGATGAT+AGG | 0.404718 | 4.3:-55640946 | MS.gene66859:CDS |
| GGAAGAGTACCAGGACGATA+TGG | 0.405806 | 4.3:-55640962 | MS.gene66859:CDS |
| GCCCAAATTCTGGTGGAATC+AGG | 0.409039 | 4.3:-55640046 | MS.gene66859:CDS |
| GTATCTTCAATATGACGTTC+TGG | 0.409956 | 4.3:+55635968 | None:intergenic |
| GAAGATTCATCGAGTGTTGC+AGG | 0.413139 | 4.3:-55642465 | MS.gene66859:intron |
| GTATACATGTCACCATTTAC+AGG | 0.414673 | 4.3:+55640857 | None:intergenic |
| AAGGCAGACGGGTCAGTTAT+GGG | 0.415806 | 4.3:-55639841 | MS.gene66859:CDS |
| AGAGACCTTTGGCTGATGTA+TGG | 0.418614 | 4.3:-55645094 | MS.gene66859:CDS |
| CAGAGGTATCTCATGGCAAT+TGG | 0.419005 | 4.3:-55645226 | MS.gene66859:CDS |
| TCCATGATTAAACCTGAATC+TGG | 0.419985 | 4.3:-55640071 | MS.gene66859:CDS |
| ATTGATCAGTTTGAAAATGA+AGG | 0.423462 | 4.3:-55639860 | MS.gene66859:CDS |
| CCTAGGAGATTATGTTGATA+GGG | 0.424523 | 4.3:-55638329 | MS.gene66859:CDS |
| GTGGCAACATGTGCAGCCCT+TGG | 0.425485 | 4.3:+55645595 | None:intergenic |
| AGCTGCGTCTGATGTACAAA+TGG | 0.426597 | 4.3:-55640984 | MS.gene66859:CDS |
| ACCTCTTAAAACCCCGTGGC+TGG | 0.426692 | 4.3:-55639175 | MS.gene66859:CDS |
| ATGCCTTGCTTCAGGGGTCT+AGG | 0.428340 | 4.3:-55640817 | MS.gene66859:intron |
| GCCAAGGCACGGCAAGAGAA+TGG | 0.432499 | 4.3:-55640158 | MS.gene66859:CDS |
| CTATGGACATGTTATGGCTT+TGG | 0.433630 | 4.3:-55645254 | MS.gene66859:CDS |
| CAAAATTCCATTACACGGTC+AGG | 0.433952 | 4.3:+55636294 | None:intergenic |
| CGACCGAATGCTAGAGGTCC+AGG | 0.435844 | 4.3:-55637668 | MS.gene66859:CDS |
| GAGCATTAGGTGGCATGGTT+AGG | 0.435993 | 4.3:-55639892 | MS.gene66859:CDS |
| AATTAAACAGACGGTTTATC+CGG | 0.436643 | 4.3:+55637962 | None:intergenic |
| TTTGCGCCATTCATAAGGTT+TGG | 0.438102 | 4.3:+55645055 | None:intergenic |
| CCATAGCGTGGCCCTGGTCC+AGG | 0.439130 | 4.3:+55645271 | None:intergenic |
| AAAATATTTGGTGATTTACA+TGG | 0.439355 | 4.3:-55639035 | MS.gene66859:CDS |
| TGGACATGTTATGGCTTTGG+TGG | 0.440355 | 4.3:-55645251 | MS.gene66859:CDS |
| TCAGCCCCACGGTCCCGATC+AGG | 0.440492 | 4.3:+55640122 | None:intergenic |
| ACATGTGCAGCCCTTGGGGT+TGG | 0.440727 | 4.3:+55645601 | None:intergenic |
| TCTGGTGGGGCTCTTGGTGG+AGG | 0.440935 | 4.3:-55642498 | MS.gene66859:CDS |
| GTGGTTATTGCCGCAGAGAC+TGG | 0.443202 | 4.3:-55639917 | MS.gene66859:CDS |
| AATAGTTTGTAGCTGAGAAA+AGG | 0.445366 | 4.3:+55636184 | None:intergenic |
| AGAGTTGGTGTTCCTGGGCC+TGG | 0.445637 | 4.3:-55645289 | MS.gene66859:CDS |
| TAATCTAACCTATGCCATCT+TGG | 0.448300 | 4.3:+55645372 | None:intergenic |
| TCTTCTGCTTTGTGGAGGGA+GGG | 0.448711 | 4.3:-55643415 | MS.gene66859:CDS |
| GCCACGCTATGGACATGTTA+TGG | 0.458411 | 4.3:-55645260 | MS.gene66859:CDS |
| GGACATGTTATGGCTTTGGT+GGG | 0.459488 | 4.3:-55645250 | MS.gene66859:CDS |
| GCTATATCACCGGCAGTTGA+TGG | 0.459620 | 4.3:+55638969 | None:intergenic |
| CTGAAAATGCCTTGCTTCAG+GGG | 0.460104 | 4.3:-55640823 | MS.gene66859:CDS |
| GGTGAAAGTGCAGGTGGTAA+TGG | 0.462912 | 4.3:+55636001 | None:intergenic |
| CAGGGTGGCATTGGTCCTGC+TGG | 0.463685 | 4.3:-55645441 | MS.gene66859:CDS |
| GTTCCAAGTGATTTATTGAC+CGG | 0.463912 | 4.3:+55637881 | None:intergenic |
| ACTGCAAGTGCACGCTCTGA+CGG | 0.465499 | 4.3:-55643441 | MS.gene66859:CDS |
| CTGTATGACAGTTGGTTCGC+TGG | 0.466427 | 4.3:+55639073 | None:intergenic |
| TTATGGCTTTGGTGGGGCAG+AGG | 0.470740 | 4.3:-55645243 | MS.gene66859:CDS |
| GGCTTCTTCTGCTTTGTGGA+GGG | 0.470940 | 4.3:-55643419 | MS.gene66859:CDS |
| CACTGGCTGCTGCCAAGGCA+CGG | 0.473002 | 4.3:-55640169 | MS.gene66859:CDS |
| TGATCGGGACCGTGGGGCTG+AGG | 0.474950 | 4.3:-55640120 | MS.gene66859:CDS |
| CTGCAAGTGCACGCTCTGAC+GGG | 0.476250 | 4.3:-55643440 | MS.gene66859:CDS |
| AACCAACTGTCATACAGCTT+AGG | 0.477320 | 4.3:-55639067 | MS.gene66859:CDS |
| CAGCTGCATGCCTGCAACGC+CGG | 0.481408 | 4.3:+55641856 | None:intergenic |
| TCTTGACAAATAAATGGTCT+AGG | 0.481907 | 4.3:-55645745 | MS.gene66859:intron |
| GTGGGGCTCTTGGTGGAGGA+CGG | 0.482311 | 4.3:-55642494 | MS.gene66859:CDS |
| AATGCAAGGCTCCATGTGTC+TGG | 0.482463 | 4.3:-55642516 | MS.gene66859:CDS |
| CTCAGTACATGCATGGAGGC+GGG | 0.482872 | 4.3:+55645012 | None:intergenic |
| TATATCGATTATCTATTCCT+AGG | 0.483370 | 4.3:-55638346 | MS.gene66859:CDS |
| TGCCACACTGGCTGCTGCCA+AGG | 0.487318 | 4.3:-55640174 | MS.gene66859:CDS |
| TCCAGATTCAGGTTTAATCA+TGG | 0.488374 | 4.3:+55640070 | None:intergenic |
| TATGTAGAGTTGGTGTTCCT+GGG | 0.489689 | 4.3:-55645294 | MS.gene66859:intron |
| ATAGGTACTGCAAATAATGC+TGG | 0.489726 | 4.3:-55636076 | MS.gene66859:intron |
| TGATAGGGGCCAACACAGCC+TGG | 0.491899 | 4.3:-55638314 | MS.gene66859:CDS |
| TATTCAGCGTCCTATTACAA+TGG | 0.492739 | 4.3:-55637848 | MS.gene66859:CDS |
| CAAGGCTCCATGTGTCTGGT+GGG | 0.493635 | 4.3:-55642512 | MS.gene66859:CDS |
| CAAGAGCCCCACCAGACACA+TGG | 0.493907 | 4.3:+55642505 | None:intergenic |
| TGCTGCTTCGCATGCTGCTG+CGG | 0.496656 | 4.3:-55641011 | MS.gene66859:CDS |
| CCTGGACCAGGGCCACGCTA+TGG | 0.497047 | 4.3:-55645271 | MS.gene66859:CDS |
| CGTGGCCCTGGTCCAGGCCC+AGG | 0.497591 | 4.3:+55645277 | None:intergenic |
| ACATGTCCATAGCGTGGCCC+TGG | 0.498792 | 4.3:+55645265 | None:intergenic |
| TAGAGATGGTCGTTGGGAAT+GGG | 0.498799 | 4.3:-55642675 | MS.gene66859:CDS |
| GTGTTCCTGGGCCTGGACCA+GGG | 0.499449 | 4.3:-55645282 | MS.gene66859:CDS |
| ATGCCTCAGTAGAGTTGGTC+CGG | 0.499748 | 4.3:-55641875 | MS.gene66859:CDS |
| ATAGAGATGGTCGTTGGGAA+TGG | 0.500749 | 4.3:-55642676 | MS.gene66859:CDS |
| AACCCTGGACCTCTAGCATT+CGG | 0.502808 | 4.3:+55637665 | None:intergenic |
| ATGGCAATTGGAGGCAATGA+TGG | 0.502919 | 4.3:-55645214 | MS.gene66859:intron |
| ATTGTAAAACAGGGTGGCAT+TGG | 0.507068 | 4.3:-55645450 | MS.gene66859:intron |
| CCCTATCAACATAATCTCCT+AGG | 0.508047 | 4.3:+55638329 | None:intergenic |
| AGGAGTTGAATCACCTGATC+GGG | 0.508379 | 4.3:-55640135 | MS.gene66859:CDS |
| AAGATATTTGTTTCCCACTA+GGG | 0.508709 | 4.3:+55640093 | None:intergenic |
| CTTAACAGGAAAGAGACCTT+TGG | 0.511121 | 4.3:-55645105 | MS.gene66859:intron |
| CGACCTCTAGTTGGTGTTGG+TGG | 0.514229 | 4.3:+55635722 | None:intergenic |
| GGCTCTTGGTGGAGGACGGA+TGG | 0.515305 | 4.3:-55642490 | MS.gene66859:CDS |
| AGGCATGCAGCTGCTGCTGT+CGG | 0.515479 | 4.3:-55641846 | MS.gene66859:CDS |
| GAGACCTTTGGCTGATGTAT+GGG | 0.516196 | 4.3:-55645093 | MS.gene66859:CDS |
| ACCAACTGTCATACAGCTTA+GGG | 0.516291 | 4.3:-55639066 | MS.gene66859:CDS |
| GTTGTTACTACTCCAAGAAC+GGG | 0.517205 | 4.3:-55641927 | MS.gene66859:CDS |
| AATTGAGTGCATTGAGAGGA+TGG | 0.519249 | 4.3:-55638099 | MS.gene66859:intron |
| CAGCTGCCAAACCTTATGAA+TGG | 0.521832 | 4.3:-55645061 | MS.gene66859:CDS |
| GAACTGGTGGTTTCCAGCCA+CGG | 0.524769 | 4.3:+55639162 | None:intergenic |
| TGGATAACTCACAACGCTAC+TGG | 0.525113 | 4.3:+55643389 | None:intergenic |
| TCTAGGTGTTTGTTAATGCA+AGG | 0.526547 | 4.3:-55642530 | MS.gene66859:intron |
| GCTCAGTACATGCATGGAGG+CGG | 0.528690 | 4.3:+55645011 | None:intergenic |
| TAGGTACTGCAAATAATGCT+GGG | 0.528832 | 4.3:-55636075 | MS.gene66859:CDS |
| TATCAATAGTGTCCCAAAGA+AGG | 0.529780 | 4.3:-55639768 | MS.gene66859:intron |
| GTACAAATGGGAAGAGTACC+AGG | 0.531728 | 4.3:-55640971 | MS.gene66859:CDS |
| GGGCTTCTTCTGCTTTGTGG+AGG | 0.531993 | 4.3:-55643420 | MS.gene66859:CDS |
| AATCACCTGATCGGGACCGT+GGG | 0.533321 | 4.3:-55640127 | MS.gene66859:CDS |
| GGGGCTGAGGCTACCCCTAG+TGG | 0.534590 | 4.3:-55640107 | MS.gene66859:CDS |
| ACAGAGAATGACAGCGTGGA+AGG | 0.535847 | 4.3:-55637695 | MS.gene66859:CDS |
| AGCAGGATCAATTGTGCTGA+TGG | 0.539249 | 4.3:-55637824 | MS.gene66859:CDS |
| GAAGATATTTGTTTCCCACT+AGG | 0.541129 | 4.3:+55640092 | None:intergenic |
| CGTCCTATTACAATGGAAGC+AGG | 0.541503 | 4.3:-55637841 | MS.gene66859:CDS |
| GGGGTTGGAGGCTCTCCAAA+AGG | 0.541603 | 4.3:+55645616 | None:intergenic |
| ATAGTTTGTAGCTGAGAAAA+GGG | 0.542289 | 4.3:+55636185 | None:intergenic |
| TGGAGATGCCTCAGTAGAGT+TGG | 0.542398 | 4.3:-55641880 | MS.gene66859:CDS |
| CTTGAAGATGGTGAGACACC+AGG | 0.542897 | 4.3:+55642644 | None:intergenic |
| AGGTATCTCATGGCAATTGG+AGG | 0.544755 | 4.3:-55645223 | MS.gene66859:CDS |
| TTATAGTTTCCAGGCTGTGT+TGG | 0.545135 | 4.3:+55638305 | None:intergenic |
| GGATTTGTTGATGATAGGAC+AGG | 0.545307 | 4.3:-55640941 | MS.gene66859:CDS |
| TATTGAAGATACCTGGATGC+AGG | 0.546581 | 4.3:-55635957 | MS.gene66859:intron |
| ATGGAATTTGGACATGGCAC+CGG | 0.546940 | 4.3:-55637981 | MS.gene66859:CDS |
| GTAGTGTTGGACACTGCTGC+TGG | 0.552648 | 4.3:-55641972 | MS.gene66859:intron |
| GCCCTAAGCTGTATGACAGT+TGG | 0.553062 | 4.3:+55639065 | None:intergenic |
| TGATTTACATGGGCAGTTTG+GGG | 0.553499 | 4.3:-55639024 | MS.gene66859:CDS |
| GCAAGGCTCCATGTGTCTGG+TGG | 0.553877 | 4.3:-55642513 | MS.gene66859:CDS |
| ATTTATGGTGGTTTACGTGG+TGG | 0.554040 | 4.3:-55641810 | MS.gene66859:intron |
| GTTGCAGCCTGACCGTGTAA+TGG | 0.556995 | 4.3:-55636301 | MS.gene66859:intron |
| TTGGAGAGCCTCCAACCCCA+AGG | 0.557154 | 4.3:-55645612 | MS.gene66859:CDS |
| TGCTGAAGATCTTGCTGCTG+CGG | 0.557465 | 4.3:-55641044 | MS.gene66859:CDS |
| CTTAGCAAGTCCATATGCAC+TGG | 0.557811 | 4.3:+55642700 | None:intergenic |
| TAAGCATAGAGATGGTCGTT+GGG | 0.557824 | 4.3:-55642681 | MS.gene66859:CDS |
| CAAGATCTTCAGCAACAAGC+AGG | 0.557929 | 4.3:+55641053 | None:intergenic |
| TCTGCTCAGGGTGAGAGAGA+TGG | 0.558214 | 4.3:-55638000 | MS.gene66859:intron |
| ATGTCCGACGTGGCTGCTGA+TGG | 0.559163 | 4.3:-55640911 | MS.gene66859:CDS |
| TTTGGGTAGGGATCTTGTGG+TGG | 0.559437 | 4.3:-55636041 | MS.gene66859:CDS |
| ACCCCAAAAGTAACTAACCC+TGG | 0.560640 | 4.3:+55637650 | None:intergenic |
| GAACCACGGTCATTTGCTAC+AGG | 0.562198 | 4.3:+55635695 | None:intergenic |
| AGATACAGTGCTGATGCAGC+TGG | 0.562470 | 4.3:-55641903 | MS.gene66859:CDS |
| TGCCTTGGCAGCAGCCAGTG+TGG | 0.565287 | 4.3:+55640172 | None:intergenic |
| GACATGTTATGGCTTTGGTG+GGG | 0.566818 | 4.3:-55645249 | MS.gene66859:CDS |
| AACGTCATATTGAAGATACC+TGG | 0.568523 | 4.3:-55635964 | MS.gene66859:CDS |
| CAAATTGGAGCCAGAAGGAG+AGG | 0.568572 | 4.3:-55645036 | MS.gene66859:CDS |
| GCTGCGTCTGATGTACAAAT+GGG | 0.568768 | 4.3:-55640983 | MS.gene66859:CDS |
| TTGACGGAATACCTGCATCC+AGG | 0.569460 | 4.3:+55635946 | None:intergenic |
| GTTTGAAAATGAAGGCAGAC+GGG | 0.571368 | 4.3:-55639852 | MS.gene66859:CDS |
| TGGCCGGTCAATAAATCACT+TGG | 0.574069 | 4.3:-55637884 | MS.gene66859:CDS |
| TGTTGTTACTACTCCAAGAA+CGG | 0.575738 | 4.3:-55641928 | MS.gene66859:CDS |
| GGCAACATGTGCAGCCCTTG+GGG | 0.576692 | 4.3:+55645597 | None:intergenic |
| TGGTGGAGCATTAGGTGGCA+TGG | 0.578886 | 4.3:-55639897 | MS.gene66859:CDS |
| TATACATGTCACCATTTACA+GGG | 0.579513 | 4.3:+55640858 | None:intergenic |
| GCACATGTTGCCACTGCAGT+GGG | 0.580526 | 4.3:-55645586 | MS.gene66859:CDS |
| TGGGAATGGGCAATTGCACC+TGG | 0.581482 | 4.3:-55642662 | MS.gene66859:CDS |
| GAGGAGTTGAATCACCTGAT+CGG | 0.581652 | 4.3:-55640136 | MS.gene66859:CDS |
| TCAACAAATCCATATCGTCC+TGG | 0.583635 | 4.3:+55640953 | None:intergenic |
| CTGCTAGAAAGTTATTAGAT+CGG | 0.583835 | 4.3:-55639799 | MS.gene66859:CDS |
| CTAAGCATAGAGATGGTCGT+TGG | 0.584263 | 4.3:-55642682 | MS.gene66859:CDS |
| GGGCTGAGGCTACCCCTAGT+GGG | 0.585238 | 4.3:-55640106 | MS.gene66859:CDS |
| TCCTCCGCTGACAATCCAGC+AGG | 0.585453 | 4.3:+55645426 | None:intergenic |
| GCATGCTGATATCTTGAAGA+TGG | 0.586515 | 4.3:+55642632 | None:intergenic |
| TCAGCAGCCACGTCGGACAT+TGG | 0.587242 | 4.3:+55640914 | None:intergenic |
| AAATATTTGGTGATTTACAT+GGG | 0.589386 | 4.3:-55639034 | MS.gene66859:CDS |
| AACAATATTCATTTAATACG+TGG | 0.589704 | 4.3:-55638164 | MS.gene66859:CDS |
| TATTGCAAAATTCCATTACA+CGG | 0.589836 | 4.3:+55636289 | None:intergenic |
| GCTGGAAACCACCAGTTCGA+CGG | 0.590734 | 4.3:-55639157 | MS.gene66859:CDS |
| TCATGAGCTCAGTACATGCA+TGG | 0.591658 | 4.3:+55645005 | None:intergenic |
| TTCTCAGCTACAAACTATTG+CGG | 0.593117 | 4.3:-55636180 | MS.gene66859:intron |
| TTTATTTATGGTGGTTTACG+TGG | 0.593304 | 4.3:-55641813 | MS.gene66859:CDS |
| TAGGGGTAGCCTCAGCCCCA+CGG | 0.594389 | 4.3:+55640111 | None:intergenic |
| CTAGGAGATTATGTTGATAG+GGG | 0.594858 | 4.3:-55638328 | MS.gene66859:CDS |
| GAAGTTTCTGGTGAAAGTGC+AGG | 0.596639 | 4.3:+55635992 | None:intergenic |
| TGGAGAGCCTCCAACCCCAA+GGG | 0.596680 | 4.3:-55645611 | MS.gene66859:CDS |
| GAATCACCTGATCGGGACCG+TGG | 0.597024 | 4.3:-55640128 | MS.gene66859:CDS |
| GAGGAAGCCAATTAAACAGA+CGG | 0.597244 | 4.3:+55637953 | None:intergenic |
| AAGGCTCCATGTGTCTGGTG+GGG | 0.599174 | 4.3:-55642511 | MS.gene66859:CDS |
| GGACTTGCTAAGCATAGAGA+TGG | 0.600630 | 4.3:-55642689 | MS.gene66859:CDS |
| ACAGGAGGACGACCTCTAGT+TGG | 0.601390 | 4.3:+55635713 | None:intergenic |
| CAGAGAATGACAGCGTGGAA+GGG | 0.602329 | 4.3:-55637694 | MS.gene66859:CDS |
| GGACGACCTCTAGTTGGTGT+TGG | 0.603208 | 4.3:+55635719 | None:intergenic |
| TTCTCAATTAGAGCTGCAAG+AGG | 0.604614 | 4.3:+55637934 | None:intergenic |
| AGTTTGAAAATGAAGGCAGA+CGG | 0.607904 | 4.3:-55639853 | MS.gene66859:CDS |
| GTTATTGCCGCAGAGACTGG+TGG | 0.610143 | 4.3:-55639914 | MS.gene66859:CDS |
| AGTCCATATGCACTGGCAAG+TGG | 0.611161 | 4.3:+55642707 | None:intergenic |
| GACCGAATGCTAGAGGTCCA+GGG | 0.611385 | 4.3:-55637667 | MS.gene66859:CDS |
| TCCACGCTGTCATTCTCTGT+AGG | 0.611873 | 4.3:+55637698 | None:intergenic |
| TTCGAATTGAGTGCATTGAG+AGG | 0.613732 | 4.3:-55638103 | MS.gene66859:CDS |
| TGCACATGTTGCCACTGCAG+TGG | 0.614784 | 4.3:-55645587 | MS.gene66859:CDS |
| TATGGTTCACCATCAACTGC+CGG | 0.615823 | 4.3:-55638978 | MS.gene66859:CDS |
| GGTGGGGCAGAGGTATCTCA+TGG | 0.616684 | 4.3:-55645233 | MS.gene66859:CDS |
| TGAAGCTATCAGTGCCACAC+TGG | 0.621819 | 4.3:-55640186 | MS.gene66859:CDS |
| TACCATCGTTCCCACTGCAG+TGG | 0.621981 | 4.3:+55645576 | None:intergenic |
| AGATATTTGTTTCCCACTAG+GGG | 0.622612 | 4.3:+55640094 | None:intergenic |
| GCACATGAATGCGTGATGGA+TGG | 0.624035 | 4.3:-55636240 | MS.gene66859:CDS |
| TGGCGCAAATTGGAGCCAGA+AGG | 0.626127 | 4.3:-55645041 | MS.gene66859:CDS |
| ATACCTAGACCCCTGAAGCA+AGG | 0.626170 | 4.3:+55640814 | None:intergenic |
| TCCTGCTGGATTGTCAGCGG+AGG | 0.627103 | 4.3:-55645427 | MS.gene66859:CDS |
| GGGCTGCGACCGAATGCTAG+AGG | 0.627867 | 4.3:-55637674 | MS.gene66859:CDS |
| AGGAACTTACGCTATATCAC+CGG | 0.628831 | 4.3:+55638959 | None:intergenic |
| TACAGTGCTGATGCAGCTGG+TGG | 0.634889 | 4.3:-55641900 | MS.gene66859:CDS |
| GCCATAACATGTCCATAGCG+TGG | 0.636565 | 4.3:+55645259 | None:intergenic |
| GAGACTGGTGGAGCATTAGG+TGG | 0.638450 | 4.3:-55639902 | MS.gene66859:CDS |
| AAATTGGAGCCAGAAGGAGA+GGG | 0.650187 | 4.3:-55645035 | MS.gene66859:CDS |
| GTGAACCATACTCGTCAAAG+AGG | 0.650621 | 4.3:+55638991 | None:intergenic |
| TGGTCCTGCTGGATTGTCAG+CGG | 0.650828 | 4.3:-55645430 | MS.gene66859:CDS |
| TTGAACAGGAGAACTAGCAA+AGG | 0.651766 | 4.3:-55640245 | MS.gene66859:intron |
| ATGATTAAACCTGAATCTGG+AGG | 0.652183 | 4.3:-55640068 | MS.gene66859:CDS |
| TTGTCAAGACATCATAACAG+TGG | 0.656171 | 4.3:+55645759 | None:intergenic |
| TTACACAGCAACGACCAAGA+TGG | 0.657159 | 4.3:-55645386 | MS.gene66859:CDS |
| TCTGGAGGCCCAAATTCTGG+TGG | 0.658527 | 4.3:-55640053 | MS.gene66859:CDS |
| AGAGAGATGGAATTTGGACA+TGG | 0.659611 | 4.3:-55637987 | MS.gene66859:CDS |
| TCGTGCACATGAATGCGTGA+TGG | 0.660261 | 4.3:-55636244 | MS.gene66859:CDS |
| AAGGCCCATACATCAGCCAA+AGG | 0.663227 | 4.3:+55645089 | None:intergenic |
| TGCACCATCAGCAGCCACGT+CGG | 0.664420 | 4.3:+55640907 | None:intergenic |
| GTGTAAGATCAAGAACGTGA+AGG | 0.669769 | 4.3:+55645403 | None:intergenic |
| CCACGGTCATTTGCTACAGG+AGG | 0.670379 | 4.3:+55635698 | None:intergenic |
| AAGGCACGGCAAGAGAATGG+AGG | 0.674733 | 4.3:-55640155 | MS.gene66859:CDS |
| ATCACCTGATCGGGACCGTG+GGG | 0.676953 | 4.3:-55640126 | MS.gene66859:CDS |
| GTTTCTGGTGAAAGTGCAGG+TGG | 0.678650 | 4.3:+55635995 | None:intergenic |
| ACTGGTGGTTTCCAGCCACG+GGG | 0.683656 | 4.3:+55639164 | None:intergenic |
| AGGTACTGCAAATAATGCTG+GGG | 0.686484 | 4.3:-55636074 | MS.gene66859:CDS |
| AAAATTATTTGCATGCATGG+GGG | 0.687635 | 4.3:-55637910 | MS.gene66859:CDS |
| AGACCACCAACACCAACTAG+AGG | 0.687730 | 4.3:-55635725 | MS.gene66859:CDS |
| ACGCCGGACCAACTCTACTG+AGG | 0.694506 | 4.3:+55641872 | None:intergenic |
| TTCAAGATATCAGCATGCAG+CGG | 0.696277 | 4.3:-55642627 | MS.gene66859:intron |
| AGCAACGACCAAGATGGCAT+AGG | 0.705668 | 4.3:-55645380 | MS.gene66859:intron |
| TACATGTCACCATTTACAGG+GGG | 0.712753 | 4.3:+55640860 | None:intergenic |
| AGGACAACCAATGTCCGACG+TGG | 0.725865 | 4.3:-55640921 | MS.gene66859:CDS |
| CCTCCTGTAGCAAATGACCG+TGG | 0.727849 | 4.3:-55635698 | None:intergenic |
| TGAGCTCAGTACATGCATGG+AGG | 0.728339 | 4.3:+55645008 | None:intergenic |
| ATCTTTGTGATAGTGCAGAG+AGG | 0.731261 | 4.3:-55639103 | MS.gene66859:CDS |
| ATACATGTCACCATTTACAG+GGG | 0.733248 | 4.3:+55640859 | None:intergenic |
| GCACACCTCTTAAAACCCCG+TGG | 0.733416 | 4.3:-55639179 | MS.gene66859:CDS |
| TAATGCTCCACCAGTCTCTG+CGG | 0.733520 | 4.3:+55639907 | None:intergenic |
| TGCCACTGCAGTGGGAACGA+TGG | 0.742026 | 4.3:-55645578 | MS.gene66859:CDS |
| TCCTACAGAGAATGACAGCG+TGG | 0.743451 | 4.3:-55637699 | MS.gene66859:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 55635699 | 55645806 | 55635699 | ID=MS.gene66859 |
| chr4.3 | mRNA | 55635699 | 55645806 | 55635699 | ID=MS.gene66859.t1;Parent=MS.gene66859 |
| chr4.3 | exon | 55645746 | 55645806 | 55645746 | ID=MS.gene66859.t1.exon1;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55645746 | 55645806 | 55645746 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55645567 | 55645645 | 55645567 | ID=MS.gene66859.t1.exon2;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55645567 | 55645645 | 55645567 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55645381 | 55645460 | 55645381 | ID=MS.gene66859.t1.exon3;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55645381 | 55645460 | 55645381 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55645215 | 55645309 | 55645215 | ID=MS.gene66859.t1.exon4;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55645215 | 55645309 | 55645215 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55645020 | 55645119 | 55645020 | ID=MS.gene66859.t1.exon5;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55645020 | 55645119 | 55645020 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55643401 | 55643470 | 55643401 | ID=MS.gene66859.t1.exon6;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55643401 | 55643470 | 55643401 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55642628 | 55642729 | 55642628 | ID=MS.gene66859.t1.exon7;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55642628 | 55642729 | 55642628 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55642466 | 55642547 | 55642466 | ID=MS.gene66859.t1.exon8;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55642466 | 55642547 | 55642466 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55641811 | 55641990 | 55641811 | ID=MS.gene66859.t1.exon9;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55641811 | 55641990 | 55641811 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55640818 | 55641091 | 55640818 | ID=MS.gene66859.t1.exon10;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55640818 | 55641091 | 55640818 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55640031 | 55640259 | 55640031 | ID=MS.gene66859.t1.exon11;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55640031 | 55640259 | 55640031 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55639769 | 55639939 | 55639769 | ID=MS.gene66859.t1.exon12;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55639769 | 55639939 | 55639769 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55638969 | 55639207 | 55638969 | ID=MS.gene66859.t1.exon13;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55638969 | 55639207 | 55638969 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55638285 | 55638369 | 55638285 | ID=MS.gene66859.t1.exon14;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55638285 | 55638369 | 55638285 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55638100 | 55638198 | 55638100 | ID=MS.gene66859.t1.exon15;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55638100 | 55638198 | 55638100 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55637814 | 55638013 | 55637814 | ID=MS.gene66859.t1.exon16;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55637814 | 55638013 | 55637814 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55637652 | 55637727 | 55637652 | ID=MS.gene66859.t1.exon17;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55637652 | 55637727 | 55637652 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55636181 | 55636316 | 55636181 | ID=MS.gene66859.t1.exon18;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55636181 | 55636316 | 55636181 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55635958 | 55636094 | 55635958 | ID=MS.gene66859.t1.exon19;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55635958 | 55636094 | 55635958 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| chr4.3 | exon | 55635699 | 55635762 | 55635699 | ID=MS.gene66859.t1.exon20;Parent=MS.gene66859.t1 |
| chr4.3 | CDS | 55635699 | 55635762 | 55635699 | ID=cds.MS.gene66859.t1;Parent=MS.gene66859.t1 |
| Gene Sequence |
| Protein sequence |
