Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051817.t1 | XP_013458419.1 | 96.2 | 970 | 37 | 0 | 36 | 1005 | 32 | 1001 | 0.00E+00 | 1247.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051817.t1 | Q6NXD8 | 31.1 | 119 | 76 | 2 | 809 | 921 | 304 | 422 | 3.4e-08 | 62.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051817.t1 | A0A072V2V8 | 96.2 | 970 | 37 | 0 | 36 | 1005 | 32 | 1001 | 0.0e+00 | 1247.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051817 | MS.gene24829 | 0.985376 | 2.24E-163 | -1.69E-46 |
| MS.gene051817 | MS.gene26507 | 0.988575 | 1.46E-174 | -1.69E-46 |
| MS.gene051817 | MS.gene72916 | 0.822967 | 1.78E-53 | -1.69E-46 |
| MS.gene051817 | MS.gene75022 | -0.809719 | 1.65E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051817.t1 | MTR_4g125480 | 94.036 | 1006 | 54 | 3 | 1 | 1005 | 1 | 1001 | 0.0 | 1925 |
| MS.gene051817.t1 | MTR_4g125480 | 93.909 | 985 | 54 | 3 | 1 | 984 | 1 | 980 | 0.0 | 1883 |
| MS.gene051817.t1 | MTR_4g125480 | 91.980 | 985 | 53 | 4 | 1 | 984 | 1 | 960 | 0.0 | 1831 |
| MS.gene051817.t1 | MTR_2g041470 | 74.941 | 427 | 105 | 2 | 580 | 1005 | 357 | 782 | 0.0 | 656 |
| MS.gene051817.t1 | MTR_2g041470 | 67.327 | 404 | 119 | 4 | 7 | 402 | 25 | 423 | 5.59e-168 | 513 |
| MS.gene051817.t1 | MTR_2g041470 | 67.494 | 403 | 118 | 4 | 7 | 401 | 25 | 422 | 2.69e-168 | 512 |
| MS.gene051817.t1 | MTR_2g041470 | 70.769 | 325 | 93 | 2 | 580 | 903 | 357 | 680 | 1.26e-150 | 466 |
| MS.gene051817.t1 | MTR_7g099030 | 50.321 | 312 | 150 | 2 | 694 | 1005 | 501 | 807 | 4.32e-88 | 301 |
| MS.gene051817.t1 | MTR_7g099030 | 42.125 | 273 | 151 | 3 | 27 | 293 | 67 | 338 | 9.77e-59 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051817.t1 | AT5G35560 | 58.409 | 440 | 158 | 6 | 575 | 1005 | 320 | 743 | 5.39e-164 | 501 |
| MS.gene051817.t1 | AT5G35560 | 61.786 | 280 | 95 | 4 | 17 | 294 | 42 | 311 | 1.48e-107 | 352 |
| MS.gene051817.t1 | AT5G35560 | 63.918 | 388 | 123 | 4 | 620 | 1005 | 345 | 717 | 5.84e-164 | 500 |
| MS.gene051817.t1 | AT5G35560 | 61.786 | 280 | 95 | 4 | 17 | 294 | 42 | 311 | 1.35e-107 | 352 |
| MS.gene051817.t1 | AT2G20320 | 50.667 | 300 | 141 | 3 | 708 | 1005 | 711 | 1005 | 2.24e-90 | 311 |
| MS.gene051817.t1 | AT2G20320 | 42.279 | 272 | 147 | 4 | 29 | 293 | 280 | 548 | 7.68e-62 | 229 |
| MS.gene051817.t1 | AT2G20320 | 50.667 | 300 | 141 | 3 | 708 | 1005 | 711 | 1005 | 2.24e-90 | 311 |
| MS.gene051817.t1 | AT2G20320 | 42.279 | 272 | 147 | 4 | 29 | 293 | 280 | 548 | 7.68e-62 | 229 |
Find 237 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGACAATTCAACACTTTA+TGG | 0.115504 | 8.2:-7234176 | MS.gene051817:CDS |
| CCGATCTTCTAATTCTTTAT+TGG | 0.135191 | 8.2:+7232065 | None:intergenic |
| ATGACAGATCCATTTGTTTA+AGG | 0.146395 | 8.2:+7234340 | None:intergenic |
| TTGAGAGCAGTGAGGATTTC+AGG | 0.206301 | 8.2:+7236401 | None:intergenic |
| GTCATTTGTATTCAGGTTAC+AGG | 0.228632 | 8.2:-7234322 | MS.gene051817:intron |
| TGGATCTGTCATTTGTATTC+AGG | 0.234584 | 8.2:-7234329 | MS.gene051817:CDS |
| ATAAGAATACTCACTATATA+AGG | 0.235466 | 8.2:+7229005 | None:intergenic |
| TTCGGTGTTGAGGTCTTATC+TGG | 0.238265 | 8.2:-7227780 | MS.gene051817:CDS |
| ACCGGATTGGTTGTCCTTCC+AGG | 0.252367 | 8.2:-7231258 | MS.gene051817:CDS |
| AGTTGTTGCCTGCTCTAATT+TGG | 0.255522 | 8.2:-7229976 | MS.gene051817:intron |
| CCACTATCTTCAGAAATTCT+AGG | 0.263141 | 8.2:+7232258 | None:intergenic |
| TCACTATCTTCAGAAATTAT+AGG | 0.264701 | 8.2:+7232843 | None:intergenic |
| AACTGTAGGGCCAGGTTCTT+TGG | 0.269822 | 8.2:+7232713 | None:intergenic |
| TCTTCTTCTTCTTTAGTCAT+TGG | 0.272784 | 8.2:+7236587 | None:intergenic |
| AGTTCCTGAACATCACAATT+AGG | 0.284358 | 8.2:+7235731 | None:intergenic |
| ATCACTTACATTTCATCCTT+TGG | 0.288504 | 8.2:-7231230 | MS.gene051817:CDS |
| GCAGCTGCCCGTCAACTATT+TGG | 0.292722 | 8.2:+7232367 | None:intergenic |
| TGTTGGTTTCACAGGGTTAT+AGG | 0.294641 | 8.2:-7235808 | MS.gene051817:intron |
| CAGTACCTGAGGTTCAATAT+TGG | 0.300865 | 8.2:+7235622 | None:intergenic |
| TGGAGAACTTCAGTCTTATA+AGG | 0.303705 | 8.2:-7232793 | MS.gene051817:CDS |
| TGCACTTTGGTGTATTAAAT+AGG | 0.308629 | 8.2:-7234001 | MS.gene051817:intron |
| CTTCTTTCTTTCTGTTTCCC+TGG | 0.313717 | 8.2:-7235354 | MS.gene051817:CDS |
| TCTAGGGAAAGATTCTTCTA+TGG | 0.316438 | 8.2:+7232275 | None:intergenic |
| TGTAGTGCCAGATTCTTCTT+TGG | 0.319307 | 8.2:+7232569 | None:intergenic |
| AAATTATATGCGAGTATTAC+CGG | 0.320510 | 8.2:-7231276 | MS.gene051817:CDS |
| GATGTTACTGCATTCTTTCA+AGG | 0.321969 | 8.2:-7234040 | MS.gene051817:CDS |
| AGATTCTTCTTTGGCTGCTT+CGG | 0.325461 | 8.2:+7232578 | None:intergenic |
| CGGGCAGCTGCATCCTTATA+AGG | 0.328318 | 8.2:-7232355 | MS.gene051817:CDS |
| TGTACGGCAAGGTTCTTCTT+TGG | 0.336203 | 8.2:+7232422 | None:intergenic |
| ACTTTATGGGTGTTGTGTTT+TGG | 0.340075 | 8.2:-7234162 | MS.gene051817:CDS |
| AGTACCTGAGGTTCAATATT+GGG | 0.340930 | 8.2:+7235623 | None:intergenic |
| CCTTATCACGCAGCTCTTGT+AGG | 0.343628 | 8.2:-7228113 | MS.gene051817:CDS |
| TAATCTATTCTCTCCTTATA+AGG | 0.343634 | 8.2:+7232342 | None:intergenic |
| CTGACAATTCAACACTTTAT+GGG | 0.346432 | 8.2:-7234175 | MS.gene051817:CDS |
| GCAGCTCTCCATCAACTATT+AGG | 0.347447 | 8.2:+7232952 | None:intergenic |
| TGGAGAGCTGCGGTCATATA+AGG | 0.348818 | 8.2:-7232940 | MS.gene051817:CDS |
| AGCTGCAAAGGGGTTTCTTT+CGG | 0.351895 | 8.2:-7227798 | MS.gene051817:CDS |
| TCACCCTAATTGTGATGTTC+AGG | 0.360223 | 8.2:-7235735 | MS.gene051817:CDS |
| CCTGAGAACCTAATAGTTGA+TGG | 0.361614 | 8.2:-7232960 | MS.gene051817:CDS |
| CTTGGCAGTTGTGGTATTGT+TGG | 0.362762 | 8.2:+7228164 | None:intergenic |
| TGAAGATAGTGGTGGTCATC+TGG | 0.362819 | 8.2:-7232247 | MS.gene051817:CDS |
| TTTCTGTTTCCCTGGAGGCT+TGG | 0.364156 | 8.2:-7235346 | MS.gene051817:CDS |
| TGGAGAGATACAGTCATATA+AGG | 0.366811 | 8.2:-7232502 | MS.gene051817:CDS |
| TTATCAGTTTCATGCTTAGT+AGG | 0.367671 | 8.2:+7232306 | None:intergenic |
| CCATCAACTATTAGGTTCTC+AGG | 0.368919 | 8.2:+7232960 | None:intergenic |
| CACTATCTTCAGAAATTATA+GGG | 0.380078 | 8.2:+7232844 | None:intergenic |
| AGAAGATCCTTGCATTTAAG+AGG | 0.384174 | 8.2:+7235372 | None:intergenic |
| ACGATTCAGAGCTTTCATAC+TGG | 0.387340 | 8.2:+7232004 | None:intergenic |
| CACTGCTCTCAAGCGTCAAT+GGG | 0.396144 | 8.2:-7236390 | MS.gene051817:CDS |
| CCTACAAGAGCTGCGTGATA+AGG | 0.400743 | 8.2:+7228113 | None:intergenic |
| CCATCTACCATTAGGTTCTC+CGG | 0.403077 | 8.2:+7232522 | None:intergenic |
| CCGTCAACTATTTGGTTCTC+CGG | 0.403550 | 8.2:+7232375 | None:intergenic |
| CTGGAGAATGCAATGGTTGA+TGG | 0.404044 | 8.2:-7232228 | MS.gene051817:CDS |
| CTGTTTCCCTGGAGGCTTGG+AGG | 0.408696 | 8.2:-7235343 | MS.gene051817:intron |
| TCACTGCTCTCAAGCGTCAA+TGG | 0.411870 | 8.2:-7236391 | MS.gene051817:CDS |
| TGCATAGGCAATTTGTTGAT+AGG | 0.412840 | 8.2:-7235709 | MS.gene051817:CDS |
| TATAGGGCCAGATTCTTCAT+TGG | 0.414422 | 8.2:+7232860 | None:intergenic |
| CTACTGAGCATGAAACTGAT+AGG | 0.419168 | 8.2:-7232452 | MS.gene051817:CDS |
| TTCGAAAGCATGGTGGTTGT+TGG | 0.419586 | 8.2:-7235761 | MS.gene051817:CDS |
| ACTTAAATGATATTCTTGAA+TGG | 0.419604 | 8.2:-7231415 | MS.gene051817:CDS |
| TTAAGTCATTTAAATTCTCT+TGG | 0.421502 | 8.2:+7231432 | None:intergenic |
| CAGTCTTATAAGGACAGAAT+AGG | 0.422776 | 8.2:-7232783 | MS.gene051817:CDS |
| GATATTAGCTCTTTCTGTCT+TGG | 0.423417 | 8.2:+7228146 | None:intergenic |
| TAACATTGGTAAACTTTGAC+TGG | 0.428914 | 8.2:+7228615 | None:intergenic |
| GTATCTCTCCATCTACCATT+AGG | 0.431400 | 8.2:+7232514 | None:intergenic |
| CTACAAGAGCTGCGTGATAA+GGG | 0.433410 | 8.2:+7228114 | None:intergenic |
| TCTGAAGACAATGATCAGTA+TGG | 0.434045 | 8.2:-7232102 | MS.gene051817:CDS |
| CCTAGAATTTCTGAAGATAG+TGG | 0.434304 | 8.2:-7232258 | MS.gene051817:CDS |
| GTTCCTGAACATCACAATTA+GGG | 0.435119 | 8.2:+7235732 | None:intergenic |
| TTTGGAGCACCTGCATCCCT+TGG | 0.438368 | 8.2:-7231212 | MS.gene051817:CDS |
| ATCTTCTAATTCTTTATTGG+TGG | 0.438856 | 8.2:+7232068 | None:intergenic |
| TCAAGTTACTAAATTGTTCA+AGG | 0.442467 | 8.2:-7236462 | MS.gene051817:CDS |
| TGGACTACTGCTTGCTTATG+TGG | 0.443811 | 8.2:-7230913 | MS.gene051817:CDS |
| CTTAAATGATATTCTTGAAT+GGG | 0.444172 | 8.2:-7231414 | MS.gene051817:CDS |
| GAAGCAGCCAAAGAAGAATC+TGG | 0.445818 | 8.2:-7232576 | MS.gene051817:CDS |
| GAAAAGTTGCAGTACCGGTC+TGG | 0.446659 | 8.2:-7231134 | MS.gene051817:CDS |
| GCAGGTCTCCATCAACCATT+AGG | 0.449721 | 8.2:+7232661 | None:intergenic |
| CCGGATTGGTTGTCCTTCCA+GGG | 0.449866 | 8.2:-7231257 | MS.gene051817:CDS |
| CGATTCAGAGCTTTCATACT+GGG | 0.451992 | 8.2:+7232005 | None:intergenic |
| GAAGTTCTCCAACAACCATT+AGG | 0.453449 | 8.2:+7232805 | None:intergenic |
| CTACAGATTGGAGCTGCAAA+GGG | 0.455645 | 8.2:-7227809 | MS.gene051817:intron |
| GCAGGAACACCTTAAACAAA+TGG | 0.458315 | 8.2:-7234349 | MS.gene051817:intron |
| CCGGAGAACCTAATGGTAGA+TGG | 0.459592 | 8.2:-7232522 | MS.gene051817:CDS |
| CCGGAGTACCTAATGGTTGT+TGG | 0.462075 | 8.2:-7232813 | MS.gene051817:CDS |
| TCAACGGCCAATGAAGAATC+TGG | 0.464288 | 8.2:-7232867 | MS.gene051817:CDS |
| CAGGTGAACCTAATGGTTGA+TGG | 0.464377 | 8.2:-7232669 | MS.gene051817:CDS |
| AGCAGGCTTTGCCATCGATA+AGG | 0.465137 | 8.2:+7229183 | None:intergenic |
| TCGACATCTGAAAACATTGT+TGG | 0.466403 | 8.2:-7232993 | MS.gene051817:CDS |
| CACCTAACCTCCAAGCCTCC+AGG | 0.466727 | 8.2:+7235336 | None:intergenic |
| TTGGAATATCATAGACCATC+CGG | 0.470147 | 8.2:-7231193 | MS.gene051817:CDS |
| ACAACAGCAAAAGAAGAATC+TGG | 0.471224 | 8.2:-7232135 | MS.gene051817:CDS |
| GATACTGCAACCTTTGAAGT+TGG | 0.478141 | 8.2:+7236483 | None:intergenic |
| TGTACAATCAAATGACGATA+AGG | 0.478142 | 8.2:-7227717 | MS.gene051817:intron |
| ATTCTTAGCAGGAATTCTGC+TGG | 0.483107 | 8.2:-7230009 | MS.gene051817:CDS |
| TCATTGTCTTCAGAAATTGT+AGG | 0.483670 | 8.2:+7232111 | None:intergenic |
| TAAGAATACTCACTATATAA+GGG | 0.485316 | 8.2:+7229006 | None:intergenic |
| GGCTTTGCCATCGATAAGGC+TGG | 0.485441 | 8.2:+7229187 | None:intergenic |
| AGGCAACTTCGTTATCTGTA+TGG | 0.486973 | 8.2:-7230933 | MS.gene051817:CDS |
| AATTTCATTCAACTCACTCA+TGG | 0.487854 | 8.2:+7234693 | None:intergenic |
| GAACTAGTGCAAAAGCCCTC+TGG | 0.488144 | 8.2:-7234134 | MS.gene051817:CDS |
| AAACTTTGACTGGACTTCAC+TGG | 0.488522 | 8.2:+7228625 | None:intergenic |
| GATTTGAAAAGTTGCAGTAC+CGG | 0.488753 | 8.2:-7231139 | MS.gene051817:CDS |
| TGGAGACCTGCAGTCTCATA+AGG | 0.491106 | 8.2:-7232649 | MS.gene051817:CDS |
| TCAAATTTAGAATTTGTTGA+AGG | 0.492252 | 8.2:-7233131 | MS.gene051817:CDS |
| TTTCACAGGGTTATAGGTCG+TGG | 0.492407 | 8.2:-7235802 | MS.gene051817:intron |
| GGGACAGTCCTGTGTCGTAC+TGG | 0.492408 | 8.2:-7231172 | MS.gene051817:CDS |
| CTCACGGCTGTTCGAAAGCA+TGG | 0.494790 | 8.2:-7235771 | MS.gene051817:CDS |
| CATTGTCTTCAGAAATTGTA+GGG | 0.497709 | 8.2:+7232112 | None:intergenic |
| CCCTGGAAGGACAACCAATC+CGG | 0.498435 | 8.2:+7231257 | None:intergenic |
| CGTCAACTATTTGGTTCTCC+GGG | 0.501380 | 8.2:+7232376 | None:intergenic |
| TTATTGTGGTTGATGCCAAC+AGG | 0.502457 | 8.2:-7228595 | MS.gene051817:CDS |
| TATGATATTCCAAGGGATGC+AGG | 0.505823 | 8.2:+7231203 | None:intergenic |
| TGAAAGGCCGATCGCGATGC+GGG | 0.506734 | 8.2:+7226553 | None:intergenic |
| TGTCCTATCAATTTCATGCT+CGG | 0.509586 | 8.2:+7232155 | None:intergenic |
| CAGGTGTTAACATTCTTAGC+AGG | 0.509682 | 8.2:-7230020 | MS.gene051817:CDS |
| CATTCAACTCACTCATGGAA+GGG | 0.509870 | 8.2:+7234698 | None:intergenic |
| GCTCATTCCCGCATCGCGAT+CGG | 0.510279 | 8.2:-7226560 | MS.gene051817:CDS |
| TCTTGTAGGAGAAAGTTACT+TGG | 0.510737 | 8.2:-7228099 | MS.gene051817:CDS |
| GAACTCAAACTGTCATTAGC+AGG | 0.510770 | 8.2:+7229166 | None:intergenic |
| AGGGGTTTCTTTCGGTGTTG+AGG | 0.511421 | 8.2:-7227790 | MS.gene051817:CDS |
| TGGAGAGTTGGAGCCTTACA+AGG | 0.512953 | 8.2:-7232208 | MS.gene051817:CDS |
| ATATGCGAGTATTACCGGAT+TGG | 0.514796 | 8.2:-7231271 | MS.gene051817:CDS |
| AAAGCTCTGAATCGTCCTGC+AGG | 0.515801 | 8.2:-7231996 | MS.gene051817:intron |
| CACTATCTTCAGAAATTCTA+GGG | 0.517423 | 8.2:+7232259 | None:intergenic |
| CACTATCTTCAGAAATTGTA+CGG | 0.519878 | 8.2:+7232406 | None:intergenic |
| CCTACAGATTGGAGCTGCAA+AGG | 0.520536 | 8.2:-7227810 | MS.gene051817:intron |
| GAGAAGCTGACGAAGAGCGT+TGG | 0.520783 | 8.2:-7233158 | MS.gene051817:CDS |
| TTCTCTCCTTATGAGACTGC+AGG | 0.521189 | 8.2:+7232643 | None:intergenic |
| TCACTATCTTCAGAAACTGT+AGG | 0.523218 | 8.2:+7232699 | None:intergenic |
| TCTTTCTGTCTTGGCAGTTG+TGG | 0.523888 | 8.2:+7228155 | None:intergenic |
| CTTTCTTTCTGTTTCCCTGG+AGG | 0.524994 | 8.2:-7235351 | MS.gene051817:CDS |
| CATCTACCATTAGGTTCTCC+GGG | 0.525128 | 8.2:+7232523 | None:intergenic |
| TCGCGATCGGCCTTTCATGA+AGG | 0.527167 | 8.2:-7226547 | MS.gene051817:intron |
| AGCGTAGAAGCCAAAGAACC+TGG | 0.528564 | 8.2:-7232723 | MS.gene051817:CDS |
| TGAAGATAGTGATGGTCACC+AGG | 0.528788 | 8.2:-7232688 | MS.gene051817:CDS |
| TGGTCACCCGGAGTACCTAA+TGG | 0.530038 | 8.2:-7232820 | MS.gene051817:CDS |
| TTTGTTGATAGGAAATCTGA+TGG | 0.531845 | 8.2:-7235698 | MS.gene051817:CDS |
| ATCGTCATTTGATTGTACAT+TGG | 0.532247 | 8.2:+7227721 | None:intergenic |
| GTAGTAGTAGCCAACTTCAA+AGG | 0.533228 | 8.2:-7236493 | MS.gene051817:CDS |
| CTGATAAAACTGAAGCAGAA+AGG | 0.533787 | 8.2:+7229223 | None:intergenic |
| GGTTGATGCCAACAGGAACC+AGG | 0.534661 | 8.2:-7228588 | MS.gene051817:intron |
| AAGAAATAAACCTTCATGAA+AGG | 0.534930 | 8.2:+7226537 | None:intergenic |
| GAGAGTGTGTTGGTGAGTGA+TGG | 0.535318 | 8.2:-7233074 | MS.gene051817:CDS |
| TGATATTCTTGAATGGGCCA+TGG | 0.535501 | 8.2:-7231408 | MS.gene051817:intron |
| CAAGTTACTAAATTGTTCAA+GGG | 0.538937 | 8.2:-7236461 | MS.gene051817:CDS |
| CATCAACTATTAGGTTCTCA+GGG | 0.539193 | 8.2:+7232961 | None:intergenic |
| CCAACAACCATTAGGTACTC+CGG | 0.539326 | 8.2:+7232813 | None:intergenic |
| TAGGAGAAAGTTACTTGGGA+AGG | 0.540092 | 8.2:-7228094 | MS.gene051817:CDS |
| CCGGAGAACCAAATAGTTGA+CGG | 0.542247 | 8.2:-7232375 | MS.gene051817:CDS |
| CACTATCTTCAGAAACTGTA+GGG | 0.542555 | 8.2:+7232700 | None:intergenic |
| CTATCAGTTTCATGCTCAGT+AGG | 0.542900 | 8.2:+7232453 | None:intergenic |
| TTACCGAGCATGAAATTGAT+AGG | 0.542943 | 8.2:-7232158 | MS.gene051817:CDS |
| GTATGAATGCACAGAAGTGC+AGG | 0.544270 | 8.2:-7228060 | MS.gene051817:intron |
| TCATTCAACTCACTCATGGA+AGG | 0.545224 | 8.2:+7234697 | None:intergenic |
| ATTCAACTCACTCATGGAAG+GGG | 0.545368 | 8.2:+7234699 | None:intergenic |
| TGAAGATAGTGATGGTCACC+CGG | 0.546321 | 8.2:-7232394 | MS.gene051817:CDS |
| TGAAGATAGTGATGGTCACC+CGG | 0.546321 | 8.2:-7232832 | MS.gene051817:CDS |
| CATCAACCATTAGGTTCACC+TGG | 0.548263 | 8.2:+7232670 | None:intergenic |
| AGAACCCAATATTGAACCTC+AGG | 0.548327 | 8.2:-7235627 | MS.gene051817:intron |
| TCTTCAGAAACTGTAGGGCC+AGG | 0.548762 | 8.2:+7232705 | None:intergenic |
| GATAGGAAATCTGATGGATC+TGG | 0.549328 | 8.2:-7235692 | MS.gene051817:CDS |
| CATCGATAAGGCTGGATTAG+CGG | 0.549735 | 8.2:+7229195 | None:intergenic |
| TGCAATGGTTGATGGAGAGT+TGG | 0.550418 | 8.2:-7232220 | MS.gene051817:CDS |
| CAACAACCATTAGGTACTCC+GGG | 0.551475 | 8.2:+7232814 | None:intergenic |
| GTAGCATCTTCACTCAAGAA+AGG | 0.552814 | 8.2:-7233184 | MS.gene051817:intron |
| CTTGTAGGAGAAAGTTACTT+GGG | 0.552826 | 8.2:-7228098 | MS.gene051817:CDS |
| CGGAGAACCAAATAGTTGAC+GGG | 0.553446 | 8.2:-7232374 | MS.gene051817:CDS |
| AAGGGATGCAGGTGCTCCAA+AGG | 0.554651 | 8.2:+7231214 | None:intergenic |
| ATATAATTTGTAGTGGTCCA+TGG | 0.555439 | 8.2:+7231290 | None:intergenic |
| GGCACAGAACACTCTTGCGA+TGG | 0.558151 | 8.2:-7230959 | MS.gene051817:CDS |
| CAGGAGAGGCAAAATAGCAT+GGG | 0.558806 | 8.2:+7232035 | None:intergenic |
| CCAATAAAGAATTAGAAGAT+CGG | 0.559196 | 8.2:-7232065 | MS.gene051817:CDS |
| GCAGGAGAGGCAAAATAGCA+TGG | 0.562597 | 8.2:+7232034 | None:intergenic |
| TACTGAGCATGAAACTGATA+GGG | 0.562704 | 8.2:-7232451 | MS.gene051817:CDS |
| GAACACTCTTGCGATGGAAG+AGG | 0.565276 | 8.2:-7230953 | MS.gene051817:CDS |
| AAATGTAAGTGATGAACCCC+TGG | 0.565984 | 8.2:+7231240 | None:intergenic |
| TGTTCACCCGGAGAACCTAA+TGG | 0.567739 | 8.2:-7232529 | MS.gene051817:CDS |
| AGTACGACACAGGACTGTCC+CGG | 0.573443 | 8.2:+7231174 | None:intergenic |
| AACACAAACCTGGTTCCTGT+TGG | 0.574238 | 8.2:+7228580 | None:intergenic |
| AAAGTTTACCAATGTTATTG+TGG | 0.574396 | 8.2:-7228609 | MS.gene051817:CDS |
| ATACTCACTATATAAGGGAC+AGG | 0.574732 | 8.2:+7229011 | None:intergenic |
| GCATACGTTTCATGCTCAGT+AGG | 0.575249 | 8.2:+7232600 | None:intergenic |
| GGCATCAACCACAATAACAT+TGG | 0.578806 | 8.2:+7228601 | None:intergenic |
| TGGTCACCAGGTGAACCTAA+TGG | 0.579355 | 8.2:-7232676 | MS.gene051817:CDS |
| GGATGGTCTATGATATTCCA+AGG | 0.580650 | 8.2:+7231195 | None:intergenic |
| CGCTAATCCAGCCTTATCGA+TGG | 0.586062 | 8.2:-7229194 | MS.gene051817:CDS |
| CGGATTGGTTGTCCTTCCAG+GGG | 0.587875 | 8.2:-7231256 | MS.gene051817:CDS |
| GGTAAATTGAGAAGTTCACT+TGG | 0.592657 | 8.2:-7235671 | MS.gene051817:CDS |
| ACGACTGCCTCTTAAATGCA+AGG | 0.592811 | 8.2:-7235379 | MS.gene051817:CDS |
| TATGATGAAGAAAACTCGGA+GGG | 0.596061 | 8.2:-7233104 | MS.gene051817:CDS |
| ATGCTTTCGAACAGCCGTGA+GGG | 0.596972 | 8.2:+7235773 | None:intergenic |
| AACACATACCAAATTAGAGC+AGG | 0.601107 | 8.2:+7229968 | None:intergenic |
| ACAGGGTTATAGGTCGTGGA+AGG | 0.601452 | 8.2:-7235798 | MS.gene051817:intron |
| GGTCGTGGAAGGAGCCCTCA+CGG | 0.602693 | 8.2:-7235787 | MS.gene051817:CDS |
| TGGAATATCATAGACCATCC+GGG | 0.603720 | 8.2:-7231192 | MS.gene051817:CDS |
| TGAAGATAGTGATGTTCACC+CGG | 0.604466 | 8.2:-7232541 | MS.gene051817:CDS |
| TACTCGCATATAATTTGTAG+TGG | 0.605532 | 8.2:+7231283 | None:intergenic |
| AAAGTTACTTGGGAAGGAGA+AGG | 0.608555 | 8.2:-7228088 | MS.gene051817:CDS |
| ACTTCTGTGCATTCATACAC+TGG | 0.608746 | 8.2:+7228065 | None:intergenic |
| CTACTGAGTATGAAACTGAC+AGG | 0.610487 | 8.2:-7232890 | MS.gene051817:CDS |
| TCTTCAGAAATTGTACGGCA+AGG | 0.611661 | 8.2:+7232411 | None:intergenic |
| ATAATTTCTGAAGATAGTGA+TGG | 0.616179 | 8.2:-7232840 | MS.gene051817:CDS |
| ACAATTTCTGAAGATAGTGA+TGG | 0.618662 | 8.2:-7232402 | MS.gene051817:CDS |
| ACCTAACCTCCAAGCCTCCA+GGG | 0.619617 | 8.2:+7235337 | None:intergenic |
| GGGAAATTCAGAGAGTGTGT+TGG | 0.623647 | 8.2:-7233084 | MS.gene051817:CDS |
| TAGATATGATGAAGAAAACT+CGG | 0.624639 | 8.2:-7233108 | MS.gene051817:CDS |
| TCTGAAAACATTGTTGGTGA+TGG | 0.625769 | 8.2:-7232987 | MS.gene051817:CDS |
| CATTGGTAATTGTGTGAGAA+CGG | 0.626236 | 8.2:+7227738 | None:intergenic |
| TACATCAGCTAACTCCAGAC+CGG | 0.627142 | 8.2:+7231120 | None:intergenic |
| TTTCATACTGGGAATAACGC+AGG | 0.628198 | 8.2:+7232016 | None:intergenic |
| ATCAACTATTAGGTTCTCAG+GGG | 0.629913 | 8.2:+7232962 | None:intergenic |
| TCAAAAGATGATAACAACAA+TGG | 0.629958 | 8.2:-7236521 | MS.gene051817:CDS |
| CTGTCAGTTTCATACTCAGT+AGG | 0.631983 | 8.2:+7232891 | None:intergenic |
| GTGATGTTCAGGAACTGCAT+AGG | 0.634986 | 8.2:-7235724 | MS.gene051817:CDS |
| ATCAGAGACAGCAATCCAGA+GGG | 0.636699 | 8.2:+7234119 | None:intergenic |
| CGTCTTAAAGAAGAGTGAGA+TGG | 0.636727 | 8.2:+7234083 | None:intergenic |
| ACAGTTTCTGAAGATAGTGA+TGG | 0.638042 | 8.2:-7232696 | MS.gene051817:CDS |
| TACTGGGAATAACGCAGGAG+AGG | 0.649934 | 8.2:+7232021 | None:intergenic |
| CTGTTGAACCAGTACGACAC+AGG | 0.653684 | 8.2:+7231164 | None:intergenic |
| GTATGAAACTGACAGGTCAA+CGG | 0.656919 | 8.2:-7232883 | MS.gene051817:CDS |
| GTAAGTGATGAACCCCTGGA+AGG | 0.657537 | 8.2:+7231244 | None:intergenic |
| ATGAAAGGCCGATCGCGATG+CGG | 0.666016 | 8.2:+7226552 | None:intergenic |
| ATATGATGAAGAAAACTCGG+AGG | 0.668194 | 8.2:-7233105 | MS.gene051817:CDS |
| AATCAGAGACAGCAATCCAG+AGG | 0.670398 | 8.2:+7234118 | None:intergenic |
| CGACACAGGACTGTCCCGGA+TGG | 0.670958 | 8.2:+7231178 | None:intergenic |
| TGGTCATCTGGAGAATGCAA+TGG | 0.674983 | 8.2:-7232235 | MS.gene051817:CDS |
| AGAATTTCTGAAGATAGTGG+TGG | 0.678763 | 8.2:-7232255 | MS.gene051817:CDS |
| CATGCTTTCGAACAGCCGTG+AGG | 0.679456 | 8.2:+7235772 | None:intergenic |
| GATGGTCTATGATATTCCAA+GGG | 0.684841 | 8.2:+7231196 | None:intergenic |
| AATTTGCAGGAAAATGACCA+TGG | 0.689684 | 8.2:-7231307 | MS.gene051817:intron |
| TACAGATTGGAGCTGCAAAG+GGG | 0.690826 | 8.2:-7227808 | MS.gene051817:intron |
| AGGAGAGGCAAAATAGCATG+GGG | 0.701722 | 8.2:+7232036 | None:intergenic |
| TCAACTATTAGGTTCTCAGG+GGG | 0.705304 | 8.2:+7232963 | None:intergenic |
| TAATAGTTGATGGAGAGCTG+CGG | 0.708549 | 8.2:-7232950 | MS.gene051817:CDS |
| AGTGATGGAATAATAGAACA+CGG | 0.710993 | 8.2:-7233059 | MS.gene051817:CDS |
| ACGGCTGTTCGAAAGCATGG+TGG | 0.718537 | 8.2:-7235768 | MS.gene051817:CDS |
| ATTGACGCTTGAGAGCAGTG+AGG | 0.768293 | 8.2:+7236393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 7226449 | 7236606 | 7226449 | ID=MS.gene051817 |
| chr8.2 | mRNA | 7226449 | 7236606 | 7226449 | ID=MS.gene051817.t1;Parent=MS.gene051817 |
| chr8.2 | exon | 7236364 | 7236606 | 7236364 | ID=MS.gene051817.t1.exon1;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7236364 | 7236606 | 7236364 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7235628 | 7235816 | 7235628 | ID=MS.gene051817.t1.exon2;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7235628 | 7235816 | 7235628 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7235344 | 7235427 | 7235344 | ID=MS.gene051817.t1.exon3;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7235344 | 7235427 | 7235344 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7234681 | 7234740 | 7234681 | ID=MS.gene051817.t1.exon4;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7234681 | 7234740 | 7234681 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7234323 | 7234367 | 7234323 | ID=MS.gene051817.t1.exon5;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7234323 | 7234367 | 7234323 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7234002 | 7234201 | 7234002 | ID=MS.gene051817.t1.exon6;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7234002 | 7234201 | 7234002 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7231997 | 7233202 | 7231997 | ID=MS.gene051817.t1.exon7;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7231997 | 7233202 | 7231997 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7231409 | 7231535 | 7231409 | ID=MS.gene051817.t1.exon8;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7231409 | 7231535 | 7231409 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7231123 | 7231320 | 7231123 | ID=MS.gene051817.t1.exon9;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7231123 | 7231320 | 7231123 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7230894 | 7230980 | 7230894 | ID=MS.gene051817.t1.exon10;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7230894 | 7230980 | 7230894 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7229977 | 7230039 | 7229977 | ID=MS.gene051817.t1.exon11;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7229977 | 7230039 | 7229977 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7229176 | 7229250 | 7229176 | ID=MS.gene051817.t1.exon12;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7229176 | 7229250 | 7229176 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7229019 | 7229069 | 7229019 | ID=MS.gene051817.t1.exon13;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7229019 | 7229069 | 7229019 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7228589 | 7228666 | 7228589 | ID=MS.gene051817.t1.exon14;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7228589 | 7228666 | 7228589 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7228061 | 7228195 | 7228061 | ID=MS.gene051817.t1.exon15;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7228061 | 7228195 | 7228061 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7227718 | 7227825 | 7227718 | ID=MS.gene051817.t1.exon16;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7227718 | 7227825 | 7227718 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7226548 | 7226613 | 7226548 | ID=MS.gene051817.t1.exon17;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7226548 | 7226613 | 7226548 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| chr8.2 | exon | 7226449 | 7226472 | 7226449 | ID=MS.gene051817.t1.exon18;Parent=MS.gene051817.t1 |
| chr8.2 | CDS | 7226449 | 7226472 | 7226449 | ID=cds.MS.gene051817.t1;Parent=MS.gene051817.t1 |
| Gene Sequence |
| Protein sequence |
