Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051875.t1 | XP_013458499.1 | 96.6 | 147 | 4 | 1 | 1 | 146 | 1 | 147 | 2.60E-70 | 274.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051875.t1 | A0A072V313 | 96.6 | 147 | 4 | 1 | 1 | 146 | 1 | 147 | 1.9e-70 | 274.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051875 | MS.gene40811 | 0.804123 | 2.51E-49 | -1.69E-46 |
| MS.gene051875 | MS.gene57629 | 0.921967 | 1.81E-88 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051875.t1 | MTR_4g126360 | 96.599 | 147 | 4 | 1 | 1 | 146 | 1 | 147 | 6.02e-99 | 281 |
| MS.gene051875.t1 | MTR_8g016210 | 39.855 | 138 | 60 | 4 | 16 | 146 | 19 | 140 | 1.55e-20 | 82.0 |
| MS.gene051875.t1 | MTR_8g016210 | 40.441 | 136 | 58 | 4 | 16 | 144 | 62 | 181 | 2.98e-20 | 82.4 |
| MS.gene051875.t1 | MTR_8g016220 | 37.121 | 132 | 64 | 4 | 16 | 144 | 18 | 133 | 3.27e-18 | 75.9 |
| MS.gene051875.t1 | MTR_8g016220 | 66.667 | 51 | 17 | 0 | 94 | 144 | 123 | 173 | 8.01e-18 | 75.9 |
| MS.gene051875.t1 | MTR_8g010670 | 59.615 | 52 | 21 | 0 | 93 | 144 | 435 | 486 | 1.08e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051875.t1 | AT1G55160 | 43.846 | 130 | 63 | 2 | 17 | 146 | 18 | 137 | 5.08e-28 | 101 |
| MS.gene051875.t1 | AT1G55160 | 43.846 | 130 | 63 | 2 | 17 | 146 | 69 | 188 | 1.62e-27 | 101 |
| MS.gene051875.t1 | AT2G19530 | 36.022 | 186 | 76 | 5 | 1 | 146 | 1 | 183 | 5.09e-25 | 95.1 |
| MS.gene051875.t1 | AT1G55160 | 37.931 | 145 | 75 | 3 | 17 | 146 | 69 | 213 | 1.88e-22 | 89.0 |
Find 36 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGAAATCTTCGTAATTT+AGG | 0.160954 | 8.2:+6279015 | None:intergenic |
| CCTTCACCTGCACCTCCAAC+TGG | 0.257972 | 8.2:-6280926 | MS.gene051875:CDS |
| CCTAAATTACGAAGATTTCT+TGG | 0.289145 | 8.2:-6279015 | MS.gene051875:CDS |
| CGTTGTTGTTCGTCAGGAAT+TGG | 0.294229 | 8.2:+6278960 | None:intergenic |
| ACTGAACTTGTGCTGGGTTC+AGG | 0.350977 | 8.2:+6279041 | None:intergenic |
| CTGACCTCCAAGTGCAAGAT+TGG | 0.362880 | 8.2:+6280856 | None:intergenic |
| CTTTCCAATCTTGCACTTGG+AGG | 0.378838 | 8.2:-6280860 | MS.gene051875:intron |
| AACGAATTTGAAGCGTTTCA+TGG | 0.395000 | 8.2:+6280898 | None:intergenic |
| TAGGTCCACTGAACTTGTGC+TGG | 0.400803 | 8.2:+6279034 | None:intergenic |
| TTGCTTTCCAATCTTGCACT+TGG | 0.407455 | 8.2:-6280863 | MS.gene051875:CDS |
| ACTTCACGTTGTTGTTCGTC+AGG | 0.414100 | 8.2:+6278954 | None:intergenic |
| TGAAACGCTTCAAATTCGTT+TGG | 0.442328 | 8.2:-6280895 | MS.gene051875:CDS |
| GGTTCCTGCCACAATGCCTA+TGG | 0.483180 | 8.2:-6278994 | MS.gene051875:CDS |
| AGGTCCACTGAACTTGTGCT+GGG | 0.487155 | 8.2:+6279035 | None:intergenic |
| GTCAAGAGGAAGTTAAAACT+TGG | 0.487763 | 8.2:+6278815 | None:intergenic |
| ACGAATTTGAAGCGTTTCAT+GGG | 0.492853 | 8.2:+6280899 | None:intergenic |
| GGTAACCCAGTTGGAGGTGC+AGG | 0.493808 | 8.2:+6280920 | None:intergenic |
| CACAATGCCTATGGAAGTGC+GGG | 0.493963 | 8.2:-6278985 | MS.gene051875:CDS |
| TGCAAAACGGAGAGATTCAA+TGG | 0.496763 | 8.2:-6279126 | MS.gene051875:CDS |
| AGGAAGTTAAAACTTGGGTA+TGG | 0.515988 | 8.2:+6278821 | None:intergenic |
| TTCTGTTTGCAAGTGCAAAA+CGG | 0.520014 | 8.2:-6279139 | MS.gene051875:CDS |
| ATTGGAGCCCGCACTTCCAT+AGG | 0.522709 | 8.2:+6278978 | None:intergenic |
| TTCATGGGTAACCCAGTTGG+AGG | 0.533424 | 8.2:+6280914 | None:intergenic |
| CGTTTCATGGGTAACCCAGT+TGG | 0.537789 | 8.2:+6280911 | None:intergenic |
| GTTGGAGGTGCAGGTGAAGG+AGG | 0.550866 | 8.2:+6280929 | None:intergenic |
| CTTCACCTGCACCTCCAACT+GGG | 0.560809 | 8.2:-6280925 | MS.gene051875:CDS |
| CCAGTTGGAGGTGCAGGTGA+AGG | 0.567865 | 8.2:+6280926 | None:intergenic |
| AGTGAAACCAAAGGATGCTA+CGG | 0.578798 | 8.2:-6278901 | MS.gene051875:CDS |
| ACTTCCATAGGCATTGTGGC+AGG | 0.581843 | 8.2:+6278990 | None:intergenic |
| TGAACCCAGCACAAGTTCAG+TGG | 0.591880 | 8.2:-6279039 | MS.gene051875:CDS |
| CCACAATGCCTATGGAAGTG+CGG | 0.595839 | 8.2:-6278986 | MS.gene051875:CDS |
| TCAAGAGGAAGTTAAAACTT+GGG | 0.599682 | 8.2:+6278816 | None:intergenic |
| GAACTTGTGCTGGGTTCAGG+AGG | 0.607480 | 8.2:+6279044 | None:intergenic |
| CCGCACTTCCATAGGCATTG+TGG | 0.608838 | 8.2:+6278986 | None:intergenic |
| GAAAAGAAAAGTGAAACCAA+AGG | 0.630528 | 8.2:-6278910 | MS.gene051875:CDS |
| TGGGTATGGAATTTGCACGC+AGG | 0.712652 | 8.2:+6278835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTTAATAAAATATTA+TGG | - | chr8.2:6280194-6280213 | MS.gene051875:intron | 0.0% |
| !!! | AAATATTAACAAATTTTGAT+TGG | - | chr8.2:6280493-6280512 | MS.gene051875:intron | 10.0% |
| !!! | AATATTAACAAATTTTGATT+GGG | - | chr8.2:6280494-6280513 | MS.gene051875:intron | 10.0% |
| !! | TATTTCTTATAATTGATTGA+TGG | - | chr8.2:6279226-6279245 | MS.gene051875:intron | 15.0% |
| !!! | AACTTTTTATCAGTTTAAAA+AGG | - | chr8.2:6279889-6279908 | MS.gene051875:intron | 15.0% |
| !!! | ACTTTTTATCAGTTTAAAAA+GGG | - | chr8.2:6279890-6279909 | MS.gene051875:intron | 15.0% |
| !! | AATTAAAAACATAGAATGAG+AGG | - | chr8.2:6280547-6280566 | MS.gene051875:intron | 20.0% |
| !! | ACAAAACATTTATGCATAAA+AGG | - | chr8.2:6280266-6280285 | MS.gene051875:intron | 20.0% |
| !! | GTTAATATTTGAAAAGAGAT+AGG | + | chr8.2:6280483-6280502 | None:intergenic | 20.0% |
| !! | TATATAATATCTCACTAAGT+AGG | + | chr8.2:6280244-6280263 | None:intergenic | 20.0% |
| !! | TCATATTTACTAAAGACAAT+CGG | + | chr8.2:6279283-6279302 | None:intergenic | 20.0% |
| !!! | AAGGAAATTTTTGAATTCAA+AGG | - | chr8.2:6279368-6279387 | MS.gene051875:intron | 20.0% |
| !!! | AGTTTTTTTTTTCCTTTTAC+CGG | + | chr8.2:6279257-6279276 | None:intergenic | 20.0% |
| !!! | ATATTATTTGAAATCCTGAA+TGG | + | chr8.2:6279152-6279171 | None:intergenic | 20.0% |
| !!! | CAATGATTTTATTGCAAAAT+TGG | - | chr8.2:6279479-6279498 | MS.gene051875:intron | 20.0% |
| !!! | CTTTTTGATGTTAAGAAAAA+AGG | - | chr8.2:6280313-6280332 | MS.gene051875:intron | 20.0% |
| !!! | GTATTTTAAAAGGAAACTTT+AGG | - | chr8.2:6279627-6279646 | MS.gene051875:intron | 20.0% |
| !!! | TGTACGTTTTGTATTTTAAA+AGG | - | chr8.2:6279617-6279636 | MS.gene051875:intron | 20.0% |
| ! | AAAATACAAAACGTACAAGT+TGG | + | chr8.2:6279614-6279633 | None:intergenic | 25.0% |
| ! | AAAGCTATAAAAGATGTGTT+AGG | + | chr8.2:6279079-6279098 | None:intergenic | 25.0% |
| ! | ACAAAAAAACATCTTTCAAC+TGG | + | chr8.2:6279675-6279694 | None:intergenic | 25.0% |
| ! | AGTACTTACGGTTATAAAAA+GGG | - | chr8.2:6279942-6279961 | MS.gene051875:intron | 25.0% |
| ! | AGTTGGACAAAATTTCAATT+AGG | + | chr8.2:6279597-6279616 | None:intergenic | 25.0% |
| ! | CAATATATCAAACAGATGAT+AGG | + | chr8.2:6279056-6279075 | None:intergenic | 25.0% |
| ! | CCTGTATAATAGCTATAAAA+AGG | - | chr8.2:6280522-6280541 | MS.gene051875:intron | 25.0% |
| ! | GAATTATCAAATACGTATCA+TGG | + | chr8.2:6280602-6280621 | None:intergenic | 25.0% |
| ! | TAGTACTTACGGTTATAAAA+AGG | - | chr8.2:6279941-6279960 | MS.gene051875:intron | 25.0% |
| ! | TTTATAACCGTAAGTACTAT+CGG | + | chr8.2:6279940-6279959 | None:intergenic | 25.0% |
| !! | CCTTTTTATAGCTATTATAC+AGG | + | chr8.2:6280525-6280544 | None:intergenic | 25.0% |
| !! | TTTTCAATCACTGTAATTGT+TGG | - | chr8.2:6278997-6279016 | MS.gene051875:CDS | 25.0% |
| AACATTCATTTCGTGAGAAA+AGG | + | chr8.2:6279520-6279539 | None:intergenic | 30.0% | |
| AAGTTGACGAGAAATAAGAA+TGG | + | chr8.2:6278962-6278981 | None:intergenic | 30.0% | |
| AATATCTCACTAAGTAGGAT+TGG | + | chr8.2:6280239-6280258 | None:intergenic | 30.0% | |
| ACATTCATTTCGTGAGAAAA+GGG | + | chr8.2:6279519-6279538 | None:intergenic | 30.0% | |
| CAACAATGTAGTTTAGTGAT+TGG | - | chr8.2:6279724-6279743 | MS.gene051875:intron | 30.0% | |
| CCAAGAAATCTTCGTAATTT+AGG | + | chr8.2:6280756-6280775 | None:intergenic | 30.0% | |
| CCTAAATTACGAAGATTTCT+TGG | - | chr8.2:6280753-6280772 | MS.gene051875:intron | 30.0% | |
| CTCGTCAACTTATGATTAAT+GGG | - | chr8.2:6278971-6278990 | MS.gene051875:CDS | 30.0% | |
| GAAAAGAAAAGTGAAACCAA+AGG | - | chr8.2:6280858-6280877 | MS.gene051875:intron | 30.0% | |
| TAACATCAAAAAGCCTAGAA+GGG | + | chr8.2:6280306-6280325 | None:intergenic | 30.0% | |
| TACAAAAGATTTACCAAGAG+AGG | + | chr8.2:6280424-6280443 | None:intergenic | 30.0% | |
| TCTCGTCAACTTATGATTAA+TGG | - | chr8.2:6278970-6278989 | MS.gene051875:CDS | 30.0% | |
| TTAACATCAAAAAGCCTAGA+AGG | + | chr8.2:6280307-6280326 | None:intergenic | 30.0% | |
| TTATAGCTATTATACAGGCT+TGG | + | chr8.2:6280520-6280539 | None:intergenic | 30.0% | |
| ! | AAACCGTATCAACTCTTTTA+AGG | + | chr8.2:6279857-6279876 | None:intergenic | 30.0% |
| ! | AACCGTATCAACTCTTTTAA+GGG | + | chr8.2:6279856-6279875 | None:intergenic | 30.0% |
| ! | ATCGGAGAATTTGTACTTTT+TGG | - | chr8.2:6279566-6279585 | MS.gene051875:intron | 30.0% |
| !! | GTTAAGAAAAAAGGTGTCAA+TGG | - | chr8.2:6280322-6280341 | MS.gene051875:intron | 30.0% |
| !! | TTGTCTTTGTTCGAGTTTTT+GGG | - | chr8.2:6279415-6279434 | MS.gene051875:intron | 30.0% |
| AAAATACTGATGTGTGGGAA+TGG | - | chr8.2:6280396-6280415 | MS.gene051875:intron | 35.0% | |
| AACTTTGCAAGAAACCATTC+AGG | - | chr8.2:6279135-6279154 | MS.gene051875:CDS | 35.0% | |
| AAGGTGATGCAGTTGAATTA+TGG | - | chr8.2:6279387-6279406 | MS.gene051875:intron | 35.0% | |
| ACCTACAAAATACTGATGTG+TGG | - | chr8.2:6280390-6280409 | MS.gene051875:intron | 35.0% | |
| ACGAGAAATAAGAATGGAGA+TGG | + | chr8.2:6278956-6278975 | None:intergenic | 35.0% | |
| AGTTTGACCGATAGTACTTA+CGG | - | chr8.2:6279930-6279949 | MS.gene051875:intron | 35.0% | |
| ATAACCGTAAGTACTATCAG+AGG | + | chr8.2:6280139-6280158 | None:intergenic | 35.0% | |
| CATCATTTGGCATTCAAGAA+AGG | - | chr8.2:6279349-6279368 | MS.gene051875:intron | 35.0% | |
| CCTACAAAATACTGATGTGT+GGG | - | chr8.2:6280391-6280410 | MS.gene051875:intron | 35.0% | |
| GGGACAAAATCATCAGTAAT+TGG | + | chr8.2:6279836-6279855 | None:intergenic | 35.0% | |
| TAACCGTAAGTACTATCAGA+GGG | + | chr8.2:6280138-6280157 | None:intergenic | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr8.2:6280042-6280061 | None:intergenic | 35.0% | |
| TGAAACGCTTCAAATTCGTT+TGG | - | chr8.2:6278873-6278892 | MS.gene051875:CDS | 35.0% | |
| TTCTGTTTGCAAGTGCAAAA+CGG | - | chr8.2:6280629-6280648 | MS.gene051875:intron | 35.0% | |
| ! | AACGAATTTGAAGCGTTTCA+TGG | + | chr8.2:6278873-6278892 | None:intergenic | 35.0% |
| ! | ACGAATTTGAAGCGTTTCAT+GGG | + | chr8.2:6278872-6278891 | None:intergenic | 35.0% |
| ! | AGTGTTTCTGTCACATCATT+TGG | - | chr8.2:6279336-6279355 | MS.gene051875:intron | 35.0% |
| ! | TAATTGATTGATGGTTGTGC+CGG | - | chr8.2:6279235-6279254 | MS.gene051875:intron | 35.0% |
| ! | TCTTTCAACTGGCTTAACAA+CGG | + | chr8.2:6279664-6279683 | None:intergenic | 35.0% |
| !! | AACAACGTGAAGTTTTCAAG+TGG | - | chr8.2:6280824-6280843 | MS.gene051875:intron | 35.0% |
| !! | CTTGTCTTTGTTCGAGTTTT+TGG | - | chr8.2:6279414-6279433 | MS.gene051875:intron | 35.0% |
| !! | GTCCCTTAAAAGAGTTGATA+CGG | - | chr8.2:6279851-6279870 | MS.gene051875:intron | 35.0% |
| !! | TGTCTTTGTTCGAGTTTTTG+GGG | - | chr8.2:6279416-6279435 | MS.gene051875:intron | 35.0% |
| !!! | TGAAGTTTTCAAGTGGATTC+TGG | - | chr8.2:6280831-6280850 | MS.gene051875:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr8.2:6280041-6280060 | MS.gene051875:intron | 35.0% |
| AACCGTAAGTACTATCAGAG+GGG | + | chr8.2:6280137-6280156 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr8.2:6280048-6280067 | None:intergenic | 40.0% | |
| AGTGAAACCAAAGGATGCTA+CGG | - | chr8.2:6280867-6280886 | MS.gene051875:CDS | 40.0% | |
| ATGTAACTGCATGCTGTGAT+CGG | - | chr8.2:6279548-6279567 | MS.gene051875:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr8.2:6280047-6280066 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr8.2:6280016-6280035 | None:intergenic | 40.0% | |
| CGTGTCTTTATTAAGCTAGC+AGG | - | chr8.2:6279105-6279124 | MS.gene051875:CDS | 40.0% | |
| GACAAGGAAACAACACATTG+TGG | + | chr8.2:6279023-6279042 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr8.2:6280092-6280111 | None:intergenic | 40.0% | |
| TAACACCATACTTTGCAGTC+TGG | - | chr8.2:6279762-6279781 | MS.gene051875:intron | 40.0% | |
| TACCCCTCTGATAGTACTTA+CGG | - | chr8.2:6280132-6280151 | MS.gene051875:intron | 40.0% | |
| TGCAAAACGGAGAGATTCAA+TGG | - | chr8.2:6280642-6280661 | MS.gene051875:intron | 40.0% | |
| TTGCTTTCCAATCTTGCACT+TGG | - | chr8.2:6278905-6278924 | MS.gene051875:CDS | 40.0% | |
| ! | CCCACACATCAGTATTTTGT+AGG | + | chr8.2:6280394-6280413 | None:intergenic | 40.0% |
| ! | CTTTCAACTGGCTTAACAAC+GGG | + | chr8.2:6279663-6279682 | None:intergenic | 40.0% |
| ! | TTTCAACTGGCTTAACAACG+GGG | + | chr8.2:6279662-6279681 | None:intergenic | 40.0% |
| ! | TTTTTCTCCGTAGCATCCTT+TGG | + | chr8.2:6280877-6280896 | None:intergenic | 40.0% |
| !! | ACTAAGTAGGATTGGCTACA+TGG | + | chr8.2:6280231-6280250 | None:intergenic | 40.0% |
| !! | CTAAGTAGGATTGGCTACAT+GGG | + | chr8.2:6280230-6280249 | None:intergenic | 40.0% |
| ACCATACTTTGCAGTCTGGT+GGG | - | chr8.2:6279766-6279785 | MS.gene051875:intron | 45.0% | |
| CGGTTATAAAAAGGGCAACC+CGG | - | chr8.2:6279950-6279969 | MS.gene051875:intron | 45.0% | |
| CTAGAAGGGTTGAGAAGTTG+AGG | + | chr8.2:6280292-6280311 | None:intergenic | 45.0% | |
| CTCAACTTCTCAACCCTTCT+AGG | - | chr8.2:6280290-6280309 | MS.gene051875:intron | 45.0% | |
| CTTTCCAATCTTGCACTTGG+AGG | - | chr8.2:6278908-6278927 | MS.gene051875:CDS | 45.0% | |
| GATAGGCAAAATGCGTGACA+AGG | + | chr8.2:6279039-6279058 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr8.2:6280017-6280036 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr8.2:6280020-6280039 | None:intergenic | 45.0% | |
| GTAGAGACAGTGACTTCACA+TGG | + | chr8.2:6279814-6279833 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | chr8.2:6280086-6280105 | None:intergenic | 45.0% | |
| TACTATCAGAGGGGTAACCT+TGG | + | chr8.2:6280128-6280147 | None:intergenic | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | chr8.2:6280085-6280104 | None:intergenic | 45.0% | |
| ! | ACTTCACGTTGTTGTTCGTC+AGG | + | chr8.2:6280817-6280836 | None:intergenic | 45.0% |
| ! | CGTTGTTGTTCGTCAGGAAT+TGG | + | chr8.2:6280811-6280830 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr8.2:6280052-6280071 | MS.gene051875:intron | 45.0% |
| ! | TTCAACTGGCTTAACAACGG+GGG | + | chr8.2:6279661-6279680 | None:intergenic | 45.0% |
| ! | TTGATGGTTGTGCCGGTAAA+AGG | - | chr8.2:6279242-6279261 | MS.gene051875:intron | 45.0% |
| !! | GTTCGAGTTTTTGGGGACAT+GGG | - | chr8.2:6279423-6279442 | MS.gene051875:intron | 45.0% |
| !! | TGTTCGAGTTTTTGGGGACA+TGG | - | chr8.2:6279422-6279441 | MS.gene051875:intron | 45.0% |
| ACTGAACTTGTGCTGGGTTC+AGG | + | chr8.2:6280730-6280749 | None:intergenic | 50.0% | |
| AGGTCCACTGAACTTGTGCT+GGG | + | chr8.2:6280736-6280755 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr8.2:6280108-6280127 | MS.gene051875:intron | 50.0% | |
| CACCATACTTTGCAGTCTGG+TGG | - | chr8.2:6279765-6279784 | MS.gene051875:intron | 50.0% | |
| CCACAATGCCTATGGAAGTG+CGG | - | chr8.2:6280782-6280801 | MS.gene051875:intron | 50.0% | |
| CCATACTTTGCAGTCTGGTG+GGG | - | chr8.2:6279767-6279786 | MS.gene051875:intron | 50.0% | |
| CGTTTCATGGGTAACCCAGT+TGG | + | chr8.2:6278860-6278879 | None:intergenic | 50.0% | |
| CTGACCTCCAAGTGCAAGAT+TGG | + | chr8.2:6278915-6278934 | None:intergenic | 50.0% | |
| TAGGTCCACTGAACTTGTGC+TGG | + | chr8.2:6280737-6280756 | None:intergenic | 50.0% | |
| TGAACCCAGCACAAGTTCAG+TGG | - | chr8.2:6280729-6280748 | MS.gene051875:intron | 50.0% | |
| TGGGTATGGAATTTGCACGC+AGG | + | chr8.2:6280936-6280955 | None:intergenic | 50.0% | |
| TGTGGGAATGGTTCCTCTCT+TGG | - | chr8.2:6280408-6280427 | MS.gene051875:intron | 50.0% | |
| TTCATGGGTAACCCAGTTGG+AGG | + | chr8.2:6278857-6278876 | None:intergenic | 50.0% | |
| ! | ACTTCCATAGGCATTGTGGC+AGG | + | chr8.2:6280781-6280800 | None:intergenic | 50.0% |
| ! | CACAATGCCTATGGAAGTGC+GGG | - | chr8.2:6280783-6280802 | MS.gene051875:intron | 50.0% |
| !! | ACATGGGAAGGAGCATCTAC+GGG | - | chr8.2:6279439-6279458 | MS.gene051875:intron | 50.0% |
| !! | GACATGGGAAGGAGCATCTA+CGG | - | chr8.2:6279438-6279457 | MS.gene051875:intron | 50.0% |
| !! | GAGTTTTTGGGGACATGGGA+AGG | - | chr8.2:6279427-6279446 | MS.gene051875:intron | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr8.2:6280073-6280092 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr8.2:6279976-6279995 | MS.gene051875:intron | 55.0% | |
| ATTGGAGCCCGCACTTCCAT+AGG | + | chr8.2:6280793-6280812 | None:intergenic | 55.0% | |
| CCCCACCAGACTGCAAAGTA+TGG | + | chr8.2:6279770-6279789 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr8.2:6279977-6279996 | MS.gene051875:intron | 55.0% | |
| CTTCACCTGCACCTCCAACT+GGG | - | chr8.2:6278843-6278862 | MS.gene051875:CDS | 55.0% | |
| GAACTTGTGCTGGGTTCAGG+AGG | + | chr8.2:6280727-6280746 | None:intergenic | 55.0% | |
| GGTTCCTGCCACAATGCCTA+TGG | - | chr8.2:6280774-6280793 | MS.gene051875:intron | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr8.2:6279972-6279991 | None:intergenic | 55.0% |
| ! | CCGCACTTCCATAGGCATTG+TGG | + | chr8.2:6280785-6280804 | None:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr8.2:6280119-6280138 | None:intergenic | 60.0% | |
| CCTTCACCTGCACCTCCAAC+TGG | - | chr8.2:6278842-6278861 | MS.gene051875:CDS | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr8.2:6280004-6280023 | None:intergenic | 60.0% |
| ! | CCAGTTGGAGGTGCAGGTGA+AGG | + | chr8.2:6278845-6278864 | None:intergenic | 60.0% |
| ! | GGTAACCCAGTTGGAGGTGC+AGG | + | chr8.2:6278851-6278870 | None:intergenic | 60.0% |
| ! | GTTGGAGGTGCAGGTGAAGG+AGG | + | chr8.2:6278842-6278861 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr8.2:6279971-6279990 | None:intergenic | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr8.2:6279989-6280008 | MS.gene051875:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr8.2:6280002-6280021 | MS.gene051875:intron | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr8.2:6279989-6280008 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr8.2:6279988-6280007 | MS.gene051875:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr8.2:6279988-6280007 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr8.2:6279987-6280006 | MS.gene051875:intron | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr8.2:6279983-6280002 | MS.gene051875:intron | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr8.2:6279982-6280001 | MS.gene051875:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6278827 | 6280963 | 6278827 | ID=MS.gene051875 |
| chr8.2 | mRNA | 6278827 | 6280963 | 6278827 | ID=MS.gene051875.t1;Parent=MS.gene051875 |
| chr8.2 | exon | 6280861 | 6280963 | 6280861 | ID=MS.gene051875.t1.exon1;Parent=MS.gene051875.t1 |
| chr8.2 | CDS | 6280861 | 6280963 | 6280861 | ID=cds.MS.gene051875.t1;Parent=MS.gene051875.t1 |
| chr8.2 | exon | 6278827 | 6279164 | 6278827 | ID=MS.gene051875.t1.exon2;Parent=MS.gene051875.t1 |
| chr8.2 | CDS | 6278827 | 6279164 | 6278827 | ID=cds.MS.gene051875.t1;Parent=MS.gene051875.t1 |
| Gene Sequence |
| Protein sequence |
