Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40811.t1 | PNY03339.1 | 84.6 | 623 | 61 | 2 | 255 | 843 | 1 | 622 | 3.60E-302 | 1047.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40811.t1 | Q84J78 | 65.0 | 206 | 61 | 1 | 1 | 206 | 1 | 195 | 1.6e-69 | 266.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40811.t1 | A0A2K3NK11 | 84.6 | 623 | 61 | 2 | 255 | 843 | 1 | 622 | 2.6e-302 | 1047.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049824 | MS.gene40811 | 0.831505 | 1.61E-55 | -1.69E-46 |
MS.gene049825 | MS.gene40811 | 0.858292 | 9.11E-63 | -1.69E-46 |
MS.gene049873 | MS.gene40811 | 0.851391 | 9.15E-61 | -1.69E-46 |
MS.gene050201 | MS.gene40811 | 0.803215 | 3.88E-49 | -1.69E-46 |
MS.gene050277 | MS.gene40811 | 0.805662 | 1.20E-49 | -1.69E-46 |
MS.gene050303 | MS.gene40811 | 0.828756 | 7.53E-55 | -1.69E-46 |
MS.gene050719 | MS.gene40811 | 0.809766 | 1.61E-50 | -1.69E-46 |
MS.gene050721 | MS.gene40811 | 0.810373 | 1.19E-50 | -1.69E-46 |
MS.gene051700 | MS.gene40811 | 0.812313 | 4.52E-51 | -1.69E-46 |
MS.gene051875 | MS.gene40811 | 0.804123 | 2.51E-49 | -1.69E-46 |
MS.gene051903 | MS.gene40811 | 0.805918 | 1.06E-49 | -1.69E-46 |
MS.gene052176 | MS.gene40811 | 0.804328 | 2.28E-49 | -1.69E-46 |
MS.gene052302 | MS.gene40811 | 0.817064 | 4.00E-52 | -1.69E-46 |
MS.gene052358 | MS.gene40811 | -0.808525 | 2.97E-50 | -1.69E-46 |
MS.gene052376 | MS.gene40811 | 0.830245 | 3.27E-55 | -1.69E-46 |
MS.gene052582 | MS.gene40811 | 0.801711 | 7.92E-49 | -1.69E-46 |
MS.gene052584 | MS.gene40811 | 0.813582 | 2.38E-51 | -1.69E-46 |
MS.gene053226 | MS.gene40811 | 0.809865 | 1.53E-50 | -1.69E-46 |
MS.gene053294 | MS.gene40811 | 0.830402 | 3.00E-55 | -1.69E-46 |
MS.gene053995 | MS.gene40811 | 0.805127 | 1.55E-49 | -1.69E-46 |
MS.gene054967 | MS.gene40811 | 0.816264 | 6.05E-52 | -1.69E-46 |
MS.gene055555 | MS.gene40811 | 0.811136 | 8.14E-51 | -1.69E-46 |
MS.gene055778 | MS.gene40811 | 0.826969 | 2.03E-54 | -1.69E-46 |
MS.gene055808 | MS.gene40811 | 0.875987 | 2.00E-68 | -1.69E-46 |
MS.gene056091 | MS.gene40811 | 0.942243 | 1.01E-101 | -1.69E-46 |
MS.gene056403 | MS.gene40811 | 0.812198 | 4.78E-51 | -1.69E-46 |
MS.gene056605 | MS.gene40811 | 0.806067 | 9.85E-50 | -1.69E-46 |
MS.gene056631 | MS.gene40811 | 0.832478 | 9.24E-56 | -1.69E-46 |
MS.gene056642 | MS.gene40811 | 0.804105 | 2.53E-49 | -1.69E-46 |
MS.gene057079 | MS.gene40811 | 0.815545 | 8.75E-52 | -1.69E-46 |
MS.gene057555 | MS.gene40811 | 0.819951 | 8.87E-53 | -1.69E-46 |
MS.gene058037 | MS.gene40811 | 0.813796 | 2.13E-51 | -1.69E-46 |
MS.gene058084 | MS.gene40811 | 0.80033 | 1.52E-48 | -1.69E-46 |
MS.gene058908 | MS.gene40811 | 0.813825 | 2.10E-51 | -1.69E-46 |
MS.gene058911 | MS.gene40811 | 0.823345 | 1.46E-53 | -1.69E-46 |
MS.gene05953 | MS.gene40811 | 0.851628 | 7.84E-61 | -1.69E-46 |
MS.gene05954 | MS.gene40811 | 0.860576 | 1.88E-63 | -1.69E-46 |
MS.gene059569 | MS.gene40811 | 0.801662 | 8.10E-49 | -1.69E-46 |
MS.gene059935 | MS.gene40811 | 0.806726 | 7.15E-50 | -1.69E-46 |
MS.gene06001 | MS.gene40811 | 0.850912 | 1.25E-60 | -1.69E-46 |
MS.gene060429 | MS.gene40811 | 0.844186 | 8.83E-59 | -1.69E-46 |
MS.gene060572 | MS.gene40811 | 0.843465 | 1.38E-58 | -1.69E-46 |
MS.gene060586 | MS.gene40811 | 0.822662 | 2.10E-53 | -1.69E-46 |
MS.gene060830 | MS.gene40811 | 0.8233 | 1.49E-53 | -1.69E-46 |
MS.gene061040 | MS.gene40811 | -0.821001 | 5.09E-53 | -1.69E-46 |
MS.gene061266 | MS.gene40811 | 0.810012 | 1.42E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40811.t1 | MTR_1g083740 | 99.034 | 207 | 2 | 0 | 1 | 207 | 1 | 207 | 1.79e-142 | 426 |
MS.gene40811.t1 | MTR_1g083740 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 6.99e-129 | 390 |
MS.gene40811.t1 | MTR_1478s0010 | 32.685 | 257 | 94 | 4 | 820 | 1061 | 15 | 207 | 6.46e-32 | 124 |
MS.gene40811.t1 | MTR_2g437280 | 48.810 | 84 | 43 | 0 | 384 | 467 | 21 | 104 | 2.52e-23 | 95.9 |
MS.gene40811.t1 | MTR_7g029555 | 43.284 | 134 | 76 | 0 | 841 | 974 | 50 | 183 | 6.71e-23 | 99.8 |
MS.gene40811.t1 | MTR_0011s0100 | 35.542 | 166 | 100 | 5 | 870 | 1031 | 2 | 164 | 7.22e-20 | 90.5 |
MS.gene40811.t1 | MTR_6g045307 | 36.471 | 170 | 103 | 5 | 865 | 1031 | 522 | 689 | 3.95e-18 | 90.9 |
MS.gene40811.t1 | MTR_4g111750 | 37.838 | 111 | 56 | 2 | 70 | 174 | 96 | 199 | 4.67e-18 | 85.1 |
MS.gene40811.t1 | MTR_3g448640 | 35.616 | 146 | 54 | 3 | 560 | 670 | 1 | 141 | 4.37e-17 | 80.9 |
MS.gene40811.t1 | MTR_0037s0030 | 39.041 | 146 | 84 | 5 | 889 | 1031 | 2 | 145 | 6.41e-17 | 81.6 |
MS.gene40811.t1 | MTR_4g044373 | 54.839 | 62 | 28 | 0 | 904 | 965 | 52 | 113 | 3.44e-14 | 71.6 |
MS.gene40811.t1 | MTR_0113s0060 | 32.515 | 163 | 99 | 6 | 867 | 1023 | 207 | 364 | 3.98e-13 | 73.6 |
MS.gene40811.t1 | MTR_5g087250 | 45.455 | 88 | 42 | 3 | 316 | 400 | 1 | 85 | 5.55e-13 | 73.2 |
MS.gene40811.t1 | MTR_6g463630 | 45.122 | 82 | 45 | 0 | 846 | 927 | 11 | 92 | 5.65e-12 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40811.t1 | AT4G11060 | 64.734 | 207 | 62 | 1 | 1 | 207 | 1 | 196 | 2.56e-84 | 271 |
MS.gene40811.t1 | AT3G18580 | 37.069 | 116 | 67 | 1 | 81 | 190 | 79 | 194 | 4.29e-22 | 96.3 |
MS.gene40811.t1 | AT3G29750 | 29.167 | 120 | 83 | 1 | 610 | 727 | 124 | 243 | 3.92e-11 | 67.0 |
Find 263 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCAAATTCACTTTGATTTC+TGG | 0.119261 | 1.2:-59711679 | None:intergenic |
ATTACCCAATGACCAATATT+TGG | 0.133409 | 1.2:+59711918 | MS.gene40811:CDS |
GTTTATAATGATAGTATTAA+TGG | 0.220262 | 1.2:+59708850 | MS.gene40811:CDS |
ATTTCGCCTATCTGTTAAAA+AGG | 0.232483 | 1.2:+59711573 | MS.gene40811:CDS |
GTTGAATTACCGATGTTTAA+TGG | 0.237659 | 1.2:+59711595 | MS.gene40811:CDS |
ACCAGAAATCAAAGTGAATT+TGG | 0.258300 | 1.2:+59711678 | MS.gene40811:CDS |
CTTTGTTCTAAAGCTGTCTT+TGG | 0.259341 | 1.2:-59713716 | None:intergenic |
TCATTTGGAGGGTTTATTAA+AGG | 0.261596 | 1.2:+59713930 | MS.gene40811:CDS |
AAGCATAACACCGCGCTTCT+TGG | 0.262538 | 1.2:-59707295 | None:intergenic |
AATTCTGATCTCTATCAATT+TGG | 0.278790 | 1.2:+59711310 | MS.gene40811:CDS |
GTGTTGGGGCTGTTGCTTAC+AGG | 0.279632 | 1.2:+59713561 | MS.gene40811:CDS |
TTCATTTCCAATTGCTGATC+TGG | 0.289247 | 1.2:-59713044 | None:intergenic |
GGCGGTTATGATCTAGTATT+GGG | 0.292392 | 1.2:+59712831 | MS.gene40811:CDS |
CTCCTGTACAGAAGATATTA+AGG | 0.303441 | 1.2:+59708551 | MS.gene40811:CDS |
GAGCATATCTTGATAATATT+CGG | 0.307710 | 1.2:-59712562 | None:intergenic |
AGGCGTCTAGCTTTGGCTTT+GGG | 0.308088 | 1.2:+59712669 | MS.gene40811:CDS |
ACACTGCCAACACTGGAAAT+TGG | 0.308210 | 1.2:+59712280 | MS.gene40811:CDS |
TTCAACTCTCCCTGCTAGTT+TGG | 0.312087 | 1.2:+59713667 | MS.gene40811:CDS |
CGGACATGTGACTTCGACTT+TGG | 0.315984 | 1.2:+59712737 | MS.gene40811:CDS |
ATATTGGTCATTGGGTAATC+TGG | 0.318150 | 1.2:-59711914 | None:intergenic |
CAGCCTTCACGTGATAATAA+TGG | 0.318951 | 1.2:+59707349 | MS.gene40811:CDS |
ATGGCATGGCTGACACAAAT+TGG | 0.330785 | 1.2:+59712855 | MS.gene40811:CDS |
GCTTTGGGTTTGCGAATTAC+CGG | 0.333432 | 1.2:+59712684 | MS.gene40811:CDS |
TTAAGGTCATTGAACGTGTT+GGG | 0.334332 | 1.2:+59713546 | MS.gene40811:CDS |
AAGTTATCTCCGAGGTATTT+TGG | 0.339142 | 1.2:+59713518 | MS.gene40811:CDS |
TATTTGGGTTATTTCGTTCA+TGG | 0.351162 | 1.2:+59711934 | MS.gene40811:CDS |
AGAAATGCAGAATCAAAATA+AGG | 0.354449 | 1.2:+59711420 | MS.gene40811:CDS |
TATGTTGATGAAAATCATTT+TGG | 0.355203 | 1.2:+59712984 | MS.gene40811:CDS |
CGATGCCACTGAGCAGGTTT+AGG | 0.364625 | 1.2:-59708652 | None:intergenic |
ACGAAATCCCCAACCTCTAC+TGG | 0.367940 | 1.2:-59707452 | None:intergenic |
GAGGACAAGGCTGTTTCTCT+TGG | 0.368517 | 1.2:+59713863 | MS.gene40811:CDS |
CATGTCAAGGCGTCTAGCTT+TGG | 0.376915 | 1.2:+59712662 | MS.gene40811:CDS |
TTACCCAATGACCAATATTT+GGG | 0.377504 | 1.2:+59711919 | MS.gene40811:CDS |
TAGAAATGGCGATTGGGTTA+TGG | 0.377910 | 1.2:+59712152 | MS.gene40811:CDS |
AAGGCGTCTAGCTTTGGCTT+TGG | 0.381133 | 1.2:+59712668 | MS.gene40811:CDS |
TCCCAGGTAGCTTCCTCAAT+AGG | 0.381208 | 1.2:-59713797 | None:intergenic |
CAGGGAAACTTCGCCTCATC+AGG | 0.382684 | 1.2:+59710327 | MS.gene40811:intron |
ACCAACAGCTTTCTTAAGTA+AGG | 0.386572 | 1.2:-59713630 | None:intergenic |
ATTGCTGACCGTCGTCAAAA+AGG | 0.391724 | 1.2:+59712339 | MS.gene40811:CDS |
GAACGAAATAACCCAAATAT+TGG | 0.392590 | 1.2:-59711930 | None:intergenic |
GGTAAATAATTAGTAATAAC+CGG | 0.397630 | 1.2:-59713284 | None:intergenic |
ACAACTTTCTGCACTTCAAC+AGG | 0.398176 | 1.2:+59711837 | MS.gene40811:CDS |
ATCCCGCTGGTTGGGTCGCT+AGG | 0.400310 | 1.2:+59711623 | MS.gene40811:CDS |
TTCTGTTCAAGGGGTTGAAT+GGG | 0.400987 | 1.2:+59712782 | MS.gene40811:CDS |
TTCCTTCAGCCTTGAGGACA+AGG | 0.401349 | 1.2:+59713850 | MS.gene40811:CDS |
GTAACAGATTGTTGCACATA+AGG | 0.402118 | 1.2:-59713479 | None:intergenic |
GGACATGTGACTTCGACTTT+GGG | 0.402200 | 1.2:+59712738 | MS.gene40811:CDS |
ATCAATTTGGTCCGACCTAC+CGG | 0.402243 | 1.2:+59711323 | MS.gene40811:CDS |
TCCCTTGCAATCTGATGCAT+TGG | 0.403586 | 1.2:-59712584 | None:intergenic |
AGATCAGAGGAATTCGTACT+AGG | 0.404181 | 1.2:+59712940 | MS.gene40811:CDS |
ACACGTTCAATGACCTTAAA+CGG | 0.404383 | 1.2:-59713542 | None:intergenic |
GGTGTTATCATTTCTGTTCA+AGG | 0.405351 | 1.2:+59712771 | MS.gene40811:CDS |
AGAAGGGTAAACCCGTCATT+TGG | 0.406196 | 1.2:+59713915 | MS.gene40811:CDS |
ACCATCTTTACAGTTGGAAC+GGG | 0.406475 | 1.2:+59708589 | MS.gene40811:CDS |
TTGTGATGCTCAACCGGATA+TGG | 0.408236 | 1.2:+59713016 | MS.gene40811:CDS |
TTGGATGTATATACATCGAT+TGG | 0.409719 | 1.2:+59712874 | MS.gene40811:CDS |
CTCTTCAAGTGCAGTCACTT+TGG | 0.413884 | 1.2:-59711368 | None:intergenic |
AAAATACCTCGGAGATAACT+TGG | 0.416915 | 1.2:-59713516 | None:intergenic |
TGAAGAGAAAATCGCAACTT+TGG | 0.417392 | 1.2:+59711384 | MS.gene40811:CDS |
TAACCCAAATATTGGTCATT+GGG | 0.418435 | 1.2:-59711922 | None:intergenic |
GTGTTATCATTTCTGTTCAA+GGG | 0.418525 | 1.2:+59712772 | MS.gene40811:CDS |
ACTTTGGCCTCCATCTTCTT+CGG | 0.423345 | 1.2:-59711352 | None:intergenic |
ATAACCCAAATATTGGTCAT+TGG | 0.423782 | 1.2:-59711923 | None:intergenic |
TTTCTGTTCAAGGGGTTGAA+TGG | 0.427045 | 1.2:+59712781 | MS.gene40811:CDS |
AGTAAGGAAACATGGAAAAC+AGG | 0.427324 | 1.2:-59713614 | None:intergenic |
TATACACTTGTTGAATGGTC+AGG | 0.434610 | 1.2:+59713142 | MS.gene40811:CDS |
GCAATTATTTGTGGTAAAGT+TGG | 0.434965 | 1.2:+59708523 | MS.gene40811:CDS |
TGTTGATCCCAGTAGAGGTT+GGG | 0.439046 | 1.2:+59707444 | MS.gene40811:CDS |
TACAGAAGATATTAAGGAAT+GGG | 0.441398 | 1.2:+59708557 | MS.gene40811:CDS |
TTTCTCAAGTTCTTATCCAT+TGG | 0.442651 | 1.2:+59713765 | MS.gene40811:CDS |
AGCCTTCACGTGATAATAAT+GGG | 0.443255 | 1.2:+59707350 | MS.gene40811:CDS |
TCAAAACAGGCAATTATTTG+TGG | 0.443764 | 1.2:+59708514 | MS.gene40811:intron |
AACTCTCCCTGCTAGTTTGG+AGG | 0.445777 | 1.2:+59713670 | MS.gene40811:CDS |
GAGCGTTGATAAAACTTCCT+TGG | 0.447768 | 1.2:+59710358 | MS.gene40811:CDS |
GTTGCATTGTGATGCTCAAC+CGG | 0.450980 | 1.2:+59713010 | MS.gene40811:CDS |
TGAAGGTAGAAATGGCGATT+GGG | 0.460745 | 1.2:+59712146 | MS.gene40811:CDS |
ATGTATGACCAGAGAATTGT+AGG | 0.461425 | 1.2:+59708616 | MS.gene40811:CDS |
CCTTTGATCCTACAATTCTC+TGG | 0.461876 | 1.2:-59708624 | None:intergenic |
CAATAGGTTTGTTCTTCCAA+TGG | 0.463951 | 1.2:-59713781 | None:intergenic |
TCACGACGAACGCATATCTC+TGG | 0.465546 | 1.2:-59708889 | None:intergenic |
TTCCTTAATATCTTCTGTAC+AGG | 0.466214 | 1.2:-59708553 | None:intergenic |
TGGTGATGATCCCGCTGGTT+GGG | 0.467624 | 1.2:+59711615 | MS.gene40811:CDS |
CCATCTTCTTCGGTGGCATC+CGG | 0.467893 | 1.2:-59711342 | None:intergenic |
AAGGCCCGAGTTACAGCTGC+AGG | 0.468832 | 1.2:+59707420 | MS.gene40811:CDS |
GGGCGGTTATGATCTAGTAT+TGG | 0.469670 | 1.2:+59712830 | MS.gene40811:CDS |
TAGAGCAGTAGAACGTGAAT+TGG | 0.470218 | 1.2:+59712038 | MS.gene40811:CDS |
GCATGCTCTTGTTGTCCTCC+AGG | 0.472378 | 1.2:-59713119 | None:intergenic |
ACACAAAATGAAGGTAGAAA+TGG | 0.474073 | 1.2:+59712138 | MS.gene40811:CDS |
TGGAGGAGGGACGAAGAGAC+TGG | 0.476048 | 1.2:+59712058 | MS.gene40811:CDS |
GACAAGGCTGTTTCTCTTGG+AGG | 0.476978 | 1.2:+59713866 | MS.gene40811:CDS |
GTCACGCCAATTTCCAGTGT+TGG | 0.477096 | 1.2:-59712286 | None:intergenic |
GATGAGTTTGATGATTTCCT+TGG | 0.477482 | 1.2:+59707394 | MS.gene40811:CDS |
TAATAAACCCTCCAAATGAC+GGG | 0.479371 | 1.2:-59713926 | None:intergenic |
ATATCTTCTGTACAGGAGCT+TGG | 0.479615 | 1.2:-59708546 | None:intergenic |
TTTAAGGTCATTGAACGTGT+TGG | 0.483496 | 1.2:+59713545 | MS.gene40811:CDS |
AGAAGAGCGTCGAAGATGCT+TGG | 0.484612 | 1.2:-59707053 | None:intergenic |
GAGATATGCGTTCGTCGTGA+TGG | 0.485219 | 1.2:+59708892 | MS.gene40811:CDS |
AGAGAAAATCGCAACTTTGG+AGG | 0.486231 | 1.2:+59711387 | MS.gene40811:CDS |
TCCTTACTTAAGAAAGCTGT+TGG | 0.486375 | 1.2:+59713629 | MS.gene40811:CDS |
ATGAAGGTAGAAATGGCGAT+TGG | 0.486801 | 1.2:+59712145 | MS.gene40811:CDS |
GTTGATCCCAGTAGAGGTTG+GGG | 0.487051 | 1.2:+59707445 | MS.gene40811:CDS |
GATCAGAGGAATTCGTACTA+GGG | 0.487767 | 1.2:+59712941 | MS.gene40811:CDS |
TCCTGCTAGACGTATCAGAT+TGG | 0.488547 | 1.2:+59712710 | MS.gene40811:CDS |
AACACCCTGCAGCTGTAACT+CGG | 0.490793 | 1.2:-59707425 | None:intergenic |
GTTCGCAGCATGATCGCTAT+GGG | 0.491257 | 1.2:+59711982 | MS.gene40811:CDS |
CTTTGGGTTTGCGAATTACC+GGG | 0.493885 | 1.2:+59712685 | MS.gene40811:CDS |
TATTGGTCATTGGGTAATCT+GGG | 0.494564 | 1.2:-59711913 | None:intergenic |
TAAAAGATGCACTTCTTGAA+AGG | 0.496701 | 1.2:+59711782 | MS.gene40811:CDS |
CCCCGTTCCAACTGTAAAGA+TGG | 0.496834 | 1.2:-59708590 | None:intergenic |
TTTCCTCCACTATTTCCTCC+AGG | 0.497942 | 1.2:-59712207 | None:intergenic |
TGATCTGGTGTCACCATATC+CGG | 0.497948 | 1.2:-59713029 | None:intergenic |
GGAAGCTGTTCAACGAGACT+TGG | 0.500942 | 1.2:+59713322 | MS.gene40811:CDS |
CTTTCTTAAGTAAGGAAACA+TGG | 0.502104 | 1.2:-59713622 | None:intergenic |
CATCAGATTGCAAGGGAAAG+TGG | 0.504068 | 1.2:+59712590 | MS.gene40811:CDS |
TTCAAGTAAGAAGAAGAATG+TGG | 0.505531 | 1.2:+59711474 | MS.gene40811:CDS |
TTGATGATTTCCTTGGTGGA+AGG | 0.507897 | 1.2:+59707401 | MS.gene40811:CDS |
AGCAGTAGAACGTGAATTGG+AGG | 0.508416 | 1.2:+59712041 | MS.gene40811:CDS |
TCACTAACCTCCAAACTAGC+AGG | 0.510233 | 1.2:-59713677 | None:intergenic |
GAATCACAAGGATTGCCTCC+TGG | 0.511187 | 1.2:+59713101 | MS.gene40811:CDS |
AGTTCTTCAGTGTATGTTGA+GGG | 0.511485 | 1.2:+59708811 | MS.gene40811:intron |
AGTTCGCAGCATGATCGCTA+TGG | 0.512094 | 1.2:+59711981 | MS.gene40811:CDS |
CATTGATGACGAGGATGATA+CGG | 0.513970 | 1.2:-59712384 | None:intergenic |
GAGAAACAGCCTTGTCCTCA+AGG | 0.515052 | 1.2:-59713859 | None:intergenic |
CATGCTATACACTTGTTGAA+TGG | 0.515207 | 1.2:+59713137 | MS.gene40811:CDS |
CCTGCTAGACGTATCAGATT+GGG | 0.515590 | 1.2:+59712711 | MS.gene40811:CDS |
TTTACCAGGTGAAGTTAAAG+TGG | 0.515904 | 1.2:+59713301 | MS.gene40811:CDS |
TTAATAAACCCTCCAAATGA+CGG | 0.516211 | 1.2:-59713927 | None:intergenic |
TGGATGTATATACATCGATT+GGG | 0.517548 | 1.2:+59712875 | MS.gene40811:CDS |
GATGCACTTCTTGAAAGGTA+TGG | 0.518239 | 1.2:+59711787 | MS.gene40811:CDS |
TGATGATGAGGGTAGAGATA+AGG | 0.518479 | 1.2:-59713182 | None:intergenic |
TTGGAAGAACAAACCTATTG+AGG | 0.518730 | 1.2:+59713784 | MS.gene40811:CDS |
GGTGACACCAGATCAGCAAT+TGG | 0.519281 | 1.2:+59713037 | MS.gene40811:CDS |
CTCCAATGCATCAGATTGCA+AGG | 0.520829 | 1.2:+59712582 | MS.gene40811:CDS |
TGAATTACATGATGAAGCCT+TGG | 0.520887 | 1.2:+59711546 | MS.gene40811:CDS |
AGTAGAGGTTGGGGATTTCG+TGG | 0.523166 | 1.2:+59707454 | MS.gene40811:CDS |
ACACCCTGCAGCTGTAACTC+GGG | 0.523237 | 1.2:-59707424 | None:intergenic |
TAAGGTCATTGAACGTGTTG+GGG | 0.523869 | 1.2:+59713547 | MS.gene40811:CDS |
GCGGTGCATAATGAAGTACT+AGG | 0.526504 | 1.2:+59708679 | MS.gene40811:CDS |
CATCTTCGACGCTCTTCTCA+CGG | 0.526813 | 1.2:+59707058 | MS.gene40811:CDS |
CCGGATGCCACCGAAGAAGA+TGG | 0.526924 | 1.2:+59711342 | MS.gene40811:CDS |
ATCTTTACAGTTGGAACGGG+GGG | 0.528265 | 1.2:+59708592 | MS.gene40811:CDS |
TGGGGCTGTTGCTTACAGGT+TGG | 0.529156 | 1.2:+59713565 | MS.gene40811:CDS |
ATAAAGAGATGATCTTCTCC+TGG | 0.530909 | 1.2:-59711447 | None:intergenic |
CGCTCTCTCCACTCCTGATG+AGG | 0.530931 | 1.2:-59710340 | None:intergenic |
GCTTCCACTTTAACTTCACC+TGG | 0.531653 | 1.2:-59713305 | None:intergenic |
GCCCTAGCGACCCAACCAGC+GGG | 0.532020 | 1.2:-59711625 | None:intergenic |
CGAAATCCCCAACCTCTACT+GGG | 0.532770 | 1.2:-59707451 | None:intergenic |
ATCTATCATGTGCTAGTGAT+CGG | 0.532867 | 1.2:+59713381 | MS.gene40811:CDS |
CCAGAGAATTGTAGGATCAA+AGG | 0.533594 | 1.2:+59708624 | MS.gene40811:CDS |
TCAAGTAAGAAGAAGAATGT+GGG | 0.535815 | 1.2:+59711475 | MS.gene40811:CDS |
AGGGTAAACCCGTCATTTGG+AGG | 0.536119 | 1.2:+59713918 | MS.gene40811:CDS |
GCAATGCGATGCCACTGAGC+AGG | 0.538443 | 1.2:-59708658 | None:intergenic |
ATCAGATTGCAAGGGAAAGT+GGG | 0.540162 | 1.2:+59712591 | MS.gene40811:CDS |
AATGTGACCATCTTTACAGT+TGG | 0.540656 | 1.2:+59708583 | MS.gene40811:CDS |
CCCAATCTGATACGTCTAGC+AGG | 0.541969 | 1.2:-59712711 | None:intergenic |
ACCTATTGAGGAAGCTACCT+GGG | 0.542375 | 1.2:+59713796 | MS.gene40811:CDS |
ATTGGAAATGAAGTCAGTGC+TGG | 0.543703 | 1.2:+59713055 | MS.gene40811:CDS |
CATTCCATGTGCACCACCTG+TGG | 0.543855 | 1.2:-59712232 | None:intergenic |
TTCGGTGGCATCCGGTAGGT+CGG | 0.544337 | 1.2:-59711334 | None:intergenic |
GTTATTACTAATTATTTACC+AGG | 0.545380 | 1.2:+59713287 | MS.gene40811:CDS |
ACAGGATGGATTCGAGATGT+AGG | 0.546359 | 1.2:-59713596 | None:intergenic |
ATGGTGATGATCCCGCTGGT+TGG | 0.547478 | 1.2:+59711614 | MS.gene40811:CDS |
TCCCGCTGGTTGGGTCGCTA+GGG | 0.549956 | 1.2:+59711624 | MS.gene40811:CDS |
AAATCCACAGGTGGTGCACA+TGG | 0.550719 | 1.2:+59712228 | MS.gene40811:CDS |
GTGAAAGAATTGCTGTTGTC+CGG | 0.550770 | 1.2:+59713227 | MS.gene40811:CDS |
AAAACACACACTGCCAACAC+TGG | 0.552966 | 1.2:+59712273 | MS.gene40811:CDS |
TTGGCCTCCATCTTCTTCGG+TGG | 0.553215 | 1.2:-59711349 | None:intergenic |
AGGTATGGTGGTGTTAGTGA+TGG | 0.553671 | 1.2:+59711802 | MS.gene40811:CDS |
GAGTTTGATGATTTCCTTGG+TGG | 0.553736 | 1.2:+59707397 | MS.gene40811:CDS |
GACCATCTTTACAGTTGGAA+CGG | 0.555814 | 1.2:+59708588 | MS.gene40811:CDS |
AAAATTGTCACACAAAATGA+AGG | 0.556147 | 1.2:+59712129 | MS.gene40811:CDS |
AACCTATTGAGGAAGCTACC+TGG | 0.557875 | 1.2:+59713795 | MS.gene40811:CDS |
TCACAAAATAATGAGTCAGT+TGG | 0.558776 | 1.2:+59711505 | MS.gene40811:CDS |
TGTGAGGAATCTGTCTTCAC+AGG | 0.559271 | 1.2:+59712314 | MS.gene40811:CDS |
GCACATGGAATGTTTAATGT+TGG | 0.559836 | 1.2:+59712243 | MS.gene40811:CDS |
GTGTTGATCCCAGTAGAGGT+TGG | 0.561168 | 1.2:+59707443 | MS.gene40811:CDS |
AGCCTTGTCCTCAAGGCTGA+AGG | 0.561508 | 1.2:-59713852 | None:intergenic |
GAATTTGGCACAATTATGCA+TGG | 0.562201 | 1.2:+59711693 | MS.gene40811:CDS |
TGTTATCATTTCTGTTCAAG+GGG | 0.563541 | 1.2:+59712773 | MS.gene40811:CDS |
GTACAGAAGATATTAAGGAA+TGG | 0.564034 | 1.2:+59708556 | MS.gene40811:CDS |
AGCCCATTATTATCACGTGA+AGG | 0.565033 | 1.2:-59707352 | None:intergenic |
ATCTAGTATTGGGGATGGCA+TGG | 0.567610 | 1.2:+59712841 | MS.gene40811:CDS |
ATTTCCTTCCTTCAGCCTTG+AGG | 0.568329 | 1.2:+59713844 | MS.gene40811:CDS |
GGGATTTCGTGGTGTGCACA+AGG | 0.569770 | 1.2:+59707465 | MS.gene40811:CDS |
CAGTTCTTCAGTGTATGTTG+AGG | 0.570927 | 1.2:+59708810 | MS.gene40811:intron |
CGGTGCATAATGAAGTACTA+GGG | 0.571828 | 1.2:+59708680 | MS.gene40811:CDS |
AGGAAACATGGAAAACAGGA+TGG | 0.572323 | 1.2:-59713610 | None:intergenic |
AGTAGAACGTGAATTGGAGG+AGG | 0.576232 | 1.2:+59712044 | MS.gene40811:CDS |
GGTATGGTGGTGTTAGTGAT+GGG | 0.576741 | 1.2:+59711803 | MS.gene40811:CDS |
GGGTAAACCCGTCATTTGGA+GGG | 0.576898 | 1.2:+59713919 | MS.gene40811:CDS |
TCGACTTTGGGAGAGTGCCA+TGG | 0.579869 | 1.2:+59712750 | MS.gene40811:CDS |
CCATCTTTACAGTTGGAACG+GGG | 0.580438 | 1.2:+59708590 | MS.gene40811:CDS |
CTGTCAACCAACATCAGCAC+TGG | 0.583003 | 1.2:-59712621 | None:intergenic |
TTTACGTCTGAAACTGATGC+TGG | 0.584180 | 1.2:+59707325 | MS.gene40811:CDS |
CAGGGTGTTGATCCCAGTAG+AGG | 0.584299 | 1.2:+59707439 | MS.gene40811:CDS |
TGCTCAGTGGCATCGCATTG+CGG | 0.585757 | 1.2:+59708660 | MS.gene40811:CDS |
TGCCCTAGCGACCCAACCAG+CGG | 0.586467 | 1.2:-59711626 | None:intergenic |
GATACGTCTAGCAGGAGTCC+CGG | 0.590947 | 1.2:-59712703 | None:intergenic |
ATATTCGGTTTGTCTATCAA+AGG | 0.592550 | 1.2:-59712547 | None:intergenic |
GAACTTACTAAATTCATCCA+AGG | 0.592834 | 1.2:-59710375 | None:intergenic |
AAAATGCGTTTCGACTATCA+AGG | 0.595311 | 1.2:+59712906 | MS.gene40811:CDS |
GAATCAAAATAAGGAGAACC+AGG | 0.597600 | 1.2:+59711429 | MS.gene40811:CDS |
TTGTCCTCAAGGCTGAAGGA+AGG | 0.603452 | 1.2:-59713848 | None:intergenic |
AAGGCTGTTTCTCTTGGAGG+CGG | 0.608955 | 1.2:+59713869 | MS.gene40811:CDS |
ATACACTTGTTGAATGGTCA+GGG | 0.609949 | 1.2:+59713143 | MS.gene40811:CDS |
TCTTTACAGTTGGAACGGGG+GGG | 0.613675 | 1.2:+59708593 | MS.gene40811:CDS |
TCAGATTGCAAGGGAAAGTG+GGG | 0.613876 | 1.2:+59712592 | MS.gene40811:CDS |
CAAAGAACAGTGGTCCGACA+TGG | 0.614963 | 1.2:+59713734 | MS.gene40811:CDS |
CATCTTTACAGTTGGAACGG+GGG | 0.616404 | 1.2:+59708591 | MS.gene40811:CDS |
TTGGCACAATTATGCATGGA+CGG | 0.616429 | 1.2:+59711697 | MS.gene40811:CDS |
CTTCTTCGGTGGCATCCGGT+AGG | 0.616551 | 1.2:-59711338 | None:intergenic |
CTTTCTGCACTTCAACAGGA+AGG | 0.616565 | 1.2:+59711841 | MS.gene40811:CDS |
AAACTTCGCCTCATCAGGAG+TGG | 0.617457 | 1.2:+59710332 | MS.gene40811:CDS |
TGATAATAATGGGCTAAACA+AGG | 0.618206 | 1.2:+59707360 | MS.gene40811:CDS |
CACTAACCTCCAAACTAGCA+GGG | 0.618568 | 1.2:-59713676 | None:intergenic |
AGATCAGAATTAAAGAGATG+AGG | 0.621011 | 1.2:-59711298 | None:intergenic |
TAGCGCACAGACTAAAGAGA+AGG | 0.621329 | 1.2:+59713898 | MS.gene40811:CDS |
AATAGTGGAGGAAAATCCAC+AGG | 0.623075 | 1.2:+59712216 | MS.gene40811:CDS |
TGGACATCGCGAAGATCACA+TGG | 0.625722 | 1.2:+59712078 | MS.gene40811:CDS |
TTATGATCTAGTATTGGGGA+TGG | 0.626948 | 1.2:+59712836 | MS.gene40811:CDS |
GAGAAATAGATATGCCATGT+CGG | 0.628788 | 1.2:-59713748 | None:intergenic |
GGAGATACCAGTGCTGATGT+TGG | 0.629091 | 1.2:+59712614 | MS.gene40811:CDS |
TTTAATGGTGATGATCCCGC+TGG | 0.633900 | 1.2:+59711610 | MS.gene40811:CDS |
GAAAGCTGTTGGTGATGATG+TGG | 0.636970 | 1.2:+59713640 | MS.gene40811:CDS |
AGATAGGCGAAATTCATCCA+AGG | 0.637024 | 1.2:-59711563 | None:intergenic |
GGATGGATTCGAGATGTAGG+AGG | 0.641685 | 1.2:-59713593 | None:intergenic |
AGCGCACAGACTAAAGAGAA+GGG | 0.645616 | 1.2:+59713899 | MS.gene40811:CDS |
GATGCCACCGAAGAAGATGG+AGG | 0.648907 | 1.2:+59711345 | MS.gene40811:CDS |
GGAGAGTGGATAGAGATCAG+AGG | 0.649289 | 1.2:+59712927 | MS.gene40811:CDS |
AAATACCTCGGAGATAACTT+GGG | 0.653666 | 1.2:-59713515 | None:intergenic |
AGGCCCGAGTTACAGCTGCA+GGG | 0.654687 | 1.2:+59707421 | MS.gene40811:CDS |
AGCTTCTGTTCCAAGAAGCG+CGG | 0.656924 | 1.2:+59707285 | MS.gene40811:intron |
CAACGAGACTTGGCTGATCG+TGG | 0.658110 | 1.2:+59713332 | MS.gene40811:CDS |
TTTCCTGGAGGAAATAGTGG+AGG | 0.658376 | 1.2:+59712204 | MS.gene40811:CDS |
TCCAATGCATCAGATTGCAA+GGG | 0.659990 | 1.2:+59712583 | MS.gene40811:CDS |
GTGCTGATGTTGGTTGACAG+TGG | 0.660474 | 1.2:+59712624 | MS.gene40811:CDS |
AGGAGAATGAAACACTGACG+TGG | 0.661399 | 1.2:+59711752 | MS.gene40811:CDS |
GGTTTGAATGACAAAATCAG+AGG | 0.662185 | 1.2:+59711955 | MS.gene40811:CDS |
TGCTCTTGTTGTCCTCCAGG+AGG | 0.666885 | 1.2:-59713116 | None:intergenic |
TAGTGATCGGATGAAGACAC+AGG | 0.672799 | 1.2:+59713394 | MS.gene40811:CDS |
GGTTAGTGAAGATTCTGTGT+GGG | 0.677892 | 1.2:+59713691 | MS.gene40811:CDS |
TTAAACGGACCAAAATACCT+CGG | 0.678694 | 1.2:-59713527 | None:intergenic |
GTAGAACGTGAATTGGAGGA+GGG | 0.680970 | 1.2:+59712045 | MS.gene40811:CDS |
TCACAAGGATTGCCTCCTGG+AGG | 0.681887 | 1.2:+59713104 | MS.gene40811:CDS |
GGAGAATGAAACACTGACGT+GGG | 0.682010 | 1.2:+59711753 | MS.gene40811:CDS |
AAGAGCAAAATTAATGAACG+TGG | 0.682566 | 1.2:+59712014 | MS.gene40811:CDS |
AGACGTATCAGATTGGGTGA+CGG | 0.683714 | 1.2:+59712717 | MS.gene40811:CDS |
GTTTCGACTATCAAGGAGAG+TGG | 0.684660 | 1.2:+59712913 | MS.gene40811:CDS |
ATTGGCGTGACAAGAATGTG+AGG | 0.691293 | 1.2:+59712298 | MS.gene40811:CDS |
AGTGGAGGAAAATCCACAGG+TGG | 0.691303 | 1.2:+59712219 | MS.gene40811:CDS |
GGATCATCACCATTAAACAT+CGG | 0.694952 | 1.2:-59711604 | None:intergenic |
GCACTTCTTGAAAGGTATGG+TGG | 0.695406 | 1.2:+59711790 | MS.gene40811:CDS |
GTAACTCGGGCCTTCCACCA+AGG | 0.696325 | 1.2:-59707411 | None:intergenic |
CAGATTGCAAGGGAAAGTGG+GGG | 0.701188 | 1.2:+59712593 | MS.gene40811:CDS |
GCGGTTATGATCTAGTATTG+GGG | 0.701563 | 1.2:+59712832 | MS.gene40811:CDS |
GAACAGAAATGATAACACCA+TGG | 0.710369 | 1.2:-59712767 | None:intergenic |
TTCGCAGCATGATCGCTATG+GGG | 0.712619 | 1.2:+59711983 | MS.gene40811:CDS |
GGTGCATAATGAAGTACTAG+GGG | 0.712926 | 1.2:+59708681 | MS.gene40811:CDS |
ATTTGCCTAAACCTGCTCAG+TGG | 0.717014 | 1.2:+59708647 | MS.gene40811:CDS |
TCTGTCCCAAGTTATCTCCG+AGG | 0.721409 | 1.2:+59713510 | MS.gene40811:CDS |
CTGACTAAGTCTGATCACAC+CGG | 0.732424 | 1.2:-59713246 | None:intergenic |
AGCTTTAGAACAAAGAACAG+TGG | 0.733594 | 1.2:+59713724 | MS.gene40811:CDS |
AGGTTAGTGAAGATTCTGTG+TGG | 0.736961 | 1.2:+59713690 | MS.gene40811:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 59707028 | 59713949 | 59707028 | ID=MS.gene40811 |
chr1.2 | mRNA | 59707028 | 59713949 | 59707028 | ID=MS.gene40811.t1;Parent=MS.gene40811 |
chr1.2 | exon | 59707028 | 59707079 | 59707028 | ID=MS.gene40811.t1.exon1;Parent=MS.gene40811.t1 |
chr1.2 | CDS | 59707028 | 59707079 | 59707028 | ID=cds.MS.gene40811.t1;Parent=MS.gene40811.t1 |
chr1.2 | exon | 59707287 | 59707486 | 59707287 | ID=MS.gene40811.t1.exon2;Parent=MS.gene40811.t1 |
chr1.2 | CDS | 59707287 | 59707486 | 59707287 | ID=cds.MS.gene40811.t1;Parent=MS.gene40811.t1 |
chr1.2 | exon | 59708523 | 59708731 | 59708523 | ID=MS.gene40811.t1.exon3;Parent=MS.gene40811.t1 |
chr1.2 | CDS | 59708523 | 59708731 | 59708523 | ID=cds.MS.gene40811.t1;Parent=MS.gene40811.t1 |
chr1.2 | exon | 59708813 | 59708913 | 59708813 | ID=MS.gene40811.t1.exon4;Parent=MS.gene40811.t1 |
chr1.2 | CDS | 59708813 | 59708913 | 59708813 | ID=cds.MS.gene40811.t1;Parent=MS.gene40811.t1 |
chr1.2 | exon | 59710330 | 59710389 | 59710330 | ID=MS.gene40811.t1.exon5;Parent=MS.gene40811.t1 |
chr1.2 | CDS | 59710330 | 59710389 | 59710330 | ID=cds.MS.gene40811.t1;Parent=MS.gene40811.t1 |
chr1.2 | exon | 59711284 | 59712396 | 59711284 | ID=MS.gene40811.t1.exon6;Parent=MS.gene40811.t1 |
chr1.2 | CDS | 59711284 | 59712396 | 59711284 | ID=cds.MS.gene40811.t1;Parent=MS.gene40811.t1 |
chr1.2 | exon | 59712499 | 59713949 | 59712499 | ID=MS.gene40811.t1.exon7;Parent=MS.gene40811.t1 |
chr1.2 | CDS | 59712499 | 59713949 | 59712499 | ID=cds.MS.gene40811.t1;Parent=MS.gene40811.t1 |
Gene Sequence |
Protein sequence |