AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052093

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052093.t1 MTR_2g097390 95.166 331 16 0 8 338 313 643 0.0 662
MS.gene052093.t1 MTR_2g097310 89.426 331 35 0 8 338 310 640 0.0 627
MS.gene052093.t1 MTR_2g097350 87.915 331 40 0 8 338 312 642 0.0 609
MS.gene052093.t1 MTR_2g097380 80.060 331 37 2 8 338 262 563 0.0 547
MS.gene052093.t1 MTR_4g064160 63.314 338 118 3 5 338 351 686 5.87e-155 451
MS.gene052093.t1 MTR_7g062120 51.775 338 157 3 5 338 407 742 1.79e-125 377
MS.gene052093.t1 MTR_2g097410 53.959 341 147 6 5 338 406 743 1.80e-125 377
MS.gene052093.t1 MTR_4g064120 51.917 339 153 5 8 338 292 628 3.93e-122 365
MS.gene052093.t1 MTR_4g064150 50.147 339 159 5 8 338 399 735 1.17e-120 364
MS.gene052093.t1 MTR_4g064180 51.327 339 155 5 8 338 292 628 7.74e-120 359
MS.gene052093.t1 MTR_4g064200 49.853 339 162 4 4 338 318 652 1.13e-119 359
MS.gene052093.t1 MTR_2g097463 48.968 339 164 4 4 338 324 657 8.48e-119 357
MS.gene052093.t1 MTR_2g097467 48.673 339 165 5 4 338 323 656 1.21e-116 352
MS.gene052093.t1 MTR_2g097473 48.968 339 164 5 4 338 323 656 3.11e-115 348
MS.gene052093.t1 MTR_5g097480 31.595 326 214 4 15 335 222 543 2.96e-54 186
MS.gene052093.t1 MTR_2g026250 29.167 336 231 3 4 335 263 595 1.57e-53 185
MS.gene052093.t1 MTR_3g056110 31.845 336 210 7 10 335 215 541 7.41e-52 180
MS.gene052093.t1 MTR_4g133660 28.614 339 231 4 4 336 210 543 3.02e-51 178
MS.gene052093.t1 MTR_2g082090 31.563 339 219 4 4 335 246 578 3.27e-51 179
MS.gene052093.t1 MTR_1g029420 30.723 332 223 3 8 335 263 591 3.33e-49 174
MS.gene052093.t1 MTR_3g089055 29.518 332 227 3 8 335 241 569 7.53e-49 172
MS.gene052093.t1 MTR_3g089055 29.518 332 227 3 8 335 236 564 9.72e-49 172
MS.gene052093.t1 MTR_7g027190 30.986 355 206 8 4 335 334 672 7.06e-46 166
MS.gene052093.t1 MTR_5g094450 29.762 336 221 8 10 335 201 531 5.97e-45 161
MS.gene052093.t1 MTR_3g065980 31.143 350 207 8 4 335 206 539 6.53e-41 150
MS.gene052093.t1 MTR_4g102790 27.193 342 225 9 10 337 332 663 2.76e-39 147
MS.gene052093.t1 MTR_4g104020 27.500 320 219 7 21 335 208 519 2.67e-36 137
MS.gene052093.t1 MTR_7g074650 30.514 331 216 8 8 337 476 793 2.33e-35 136
MS.gene052093.t1 MTR_8g442410 26.496 351 224 9 4 335 189 524 2.03e-34 132
MS.gene052093.t1 MTR_3g022830 23.936 376 231 7 10 335 65 435 4.94e-31 122
MS.gene052093.t1 MTR_4g077760 29.545 308 193 8 39 335 260 554 1.18e-30 122
MS.gene052093.t1 MTR_5g009080 24.051 395 230 10 4 335 90 477 2.41e-29 117
MS.gene052093.t1 MTR_4g076140 23.214 392 236 9 4 335 82 468 4.40e-28 114
MS.gene052093.t1 MTR_7g057230 26.804 291 194 6 55 335 375 656 1.40e-27 114
MS.gene052093.t1 MTR_4g097080 24.000 350 230 10 8 337 171 504 1.34e-26 110
MS.gene052093.t1 MTR_1g096030 27.684 354 213 14 10 335 120 458 2.40e-25 106
MS.gene052093.t1 MTR_1g069725 28.859 298 195 9 42 335 178 462 2.37e-24 103
MS.gene052093.t1 MTR_5g015490 24.432 352 232 10 8 337 152 491 3.47e-24 103
MS.gene052093.t1 MTR_2g034260 23.276 348 243 8 4 335 244 583 1.97e-23 101
MS.gene052093.t1 MTR_2g089100 26.480 321 201 8 47 338 131 445 2.06e-23 100
MS.gene052093.t1 MTR_6g047750 26.027 292 198 6 55 335 377 661 2.98e-23 100
MS.gene052093.t1 MTR_2g034250 23.410 346 246 6 4 335 244 584 5.35e-23 100
MS.gene052093.t1 MTR_7g109580 25.150 334 231 9 11 335 230 553 1.27e-22 99.0
MS.gene052093.t1 MTR_2g034280 22.965 344 247 7 4 335 237 574 2.22e-22 98.2
MS.gene052093.t1 MTR_4g076020 26.627 338 209 12 10 338 124 431 1.55e-21 95.1
MS.gene052093.t1 MTR_5g058860 25.833 360 220 16 4 335 156 496 2.74e-20 92.0
MS.gene052093.t1 MTR_3g072710 24.100 361 226 14 4 335 158 499 7.51e-20 90.5
MS.gene052093.t1 MTR_1g086970 25.000 308 198 11 40 335 191 477 7.44e-17 81.6
MS.gene052093.t1 MTR_0092s0100 24.675 308 197 10 41 335 442 727 4.94e-15 76.6
MS.gene052093.t1 MTR_0092s0100 24.675 308 197 10 41 335 445 730 5.04e-15 76.6
MS.gene052093.t1 MTR_8g093070 24.510 306 204 11 43 338 210 498 5.15e-15 76.3
MS.gene052093.t1 MTR_2g099110 26.437 261 177 6 8 261 112 364 6.09e-15 75.9
MS.gene052093.t1 MTR_4g026485 24.752 303 204 10 41 335 337 623 2.34e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052093.t1 AT1G07530 55.952 336 141 4 8 338 434 767 3.44e-136 405
MS.gene052093.t1 AT2G29060 52.976 336 151 3 8 337 322 656 5.11e-130 386
MS.gene052093.t1 AT2G29060 52.976 336 151 3 8 337 359 693 2.38e-129 385
MS.gene052093.t1 AT1G07520 51.613 341 154 6 8 338 192 531 8.20e-120 356
MS.gene052093.t1 AT1G07520 51.613 341 154 6 8 338 192 531 8.20e-120 356
MS.gene052093.t1 AT1G07520 51.613 341 154 6 8 338 356 695 5.49e-118 356
MS.gene052093.t1 AT1G07520 51.613 341 154 6 8 338 357 696 5.69e-118 356
MS.gene052093.t1 AT2G29065 52.047 342 152 7 8 338 290 630 9.55e-117 351
MS.gene052093.t1 AT2G37650 46.884 337 171 4 5 337 370 702 6.92e-106 325
MS.gene052093.t1 AT2G37650 46.884 337 171 4 5 337 382 714 7.71e-106 325
MS.gene052093.t1 AT3G46600 44.675 338 180 4 5 338 39 373 2.39e-101 303
MS.gene052093.t1 AT3G46600 44.675 338 180 4 5 338 215 549 1.32e-99 305
MS.gene052093.t1 AT3G46600 44.675 338 180 4 5 338 247 581 7.29e-99 303
MS.gene052093.t1 AT5G59450 43.235 340 186 4 5 338 262 600 3.62e-98 303
MS.gene052093.t1 AT2G04890 31.548 336 216 4 4 335 87 412 1.85e-58 194
MS.gene052093.t1 AT5G48150 32.641 337 219 5 4 335 156 489 3.09e-57 193
MS.gene052093.t1 AT5G48150 32.641 337 219 5 4 335 156 489 3.09e-57 193
MS.gene052093.t1 AT5G48150 32.641 337 219 5 4 335 156 489 3.09e-57 193
MS.gene052093.t1 AT5G48150 32.641 337 219 5 4 335 156 489 3.09e-57 193
MS.gene052093.t1 AT1G50600 32.219 329 210 4 14 335 203 525 4.13e-53 183
MS.gene052093.t1 AT1G50600 32.219 329 210 4 14 335 274 596 1.35e-52 183
MS.gene052093.t1 AT1G50600 32.219 329 210 4 14 335 278 600 1.48e-52 183
MS.gene052093.t1 AT1G21450 30.655 336 219 7 8 335 263 592 1.04e-46 167
MS.gene052093.t1 AT4G17230 28.994 338 233 3 4 337 192 526 5.77e-44 158
MS.gene052093.t1 AT4G17230 28.994 338 233 3 4 337 192 526 5.77e-44 158
MS.gene052093.t1 AT1G66350 31.447 318 204 7 21 335 199 505 2.47e-40 148
MS.gene052093.t1 AT3G03450 28.994 338 216 8 8 335 221 544 3.19e-40 148
MS.gene052093.t1 AT1G14920 29.290 338 218 8 4 335 206 528 1.05e-39 147
MS.gene052093.t1 AT2G01570 30.409 342 209 11 4 335 258 580 4.32e-39 146
MS.gene052093.t1 AT5G17490 27.711 332 222 7 8 335 198 515 1.99e-37 140
MS.gene052093.t1 AT3G54220 30.539 334 215 9 8 337 331 651 2.55e-36 139
MS.gene052093.t1 AT1G63100 27.760 317 211 7 10 318 293 599 8.32e-31 123
MS.gene052093.t1 AT1G63100 27.760 317 211 7 10 318 318 624 8.66e-31 123
MS.gene052093.t1 AT5G66770 28.446 341 217 11 8 335 257 583 1.31e-28 116
MS.gene052093.t1 AT3G50650 26.115 314 205 9 39 335 238 541 1.19e-26 110
MS.gene052093.t1 AT1G50420 21.320 394 242 9 4 335 91 478 3.26e-26 108
MS.gene052093.t1 AT5G52510 24.784 347 225 9 10 335 308 639 7.55e-25 105
MS.gene052093.t1 AT5G41920 30.000 340 201 14 10 335 83 399 2.08e-24 103
MS.gene052093.t1 AT4G08250 24.595 309 212 10 38 335 178 476 1.87e-22 98.2
MS.gene052093.t1 AT4G37650 23.676 321 211 9 8 303 184 495 4.63e-22 97.4
MS.gene052093.t1 AT1G55580 26.250 320 208 9 34 335 135 444 1.26e-20 92.8
MS.gene052093.t1 AT3G49950 23.256 301 212 7 51 337 114 409 1.08e-15 77.8
MS.gene052093.t1 AT3G60630 28.571 210 125 8 41 236 327 525 2.01e-12 68.6

Find 62 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTCTCTCCAATGAATT+TGG 0.151096 2.2:+5025868 None:intergenic
AGTCTTCACATTATAGATTT+TGG 0.160984 2.2:-5025985 MS.gene052093:CDS
ATGCTATGAATAAATATATT+TGG 0.170780 2.2:+5025619 None:intergenic
TTTATTCATAGCATTGTTAA+TGG 0.248656 2.2:-5025610 MS.gene052093:CDS
GTGAAGACTTTCTGTTTCTT+TGG 0.249798 2.2:+5025999 None:intergenic
TTCTATTTGGTTCTTCTTGT+TGG 0.254378 2.2:-5025222 MS.gene052093:CDS
CATATATGCAATGGCATTCT+AGG 0.264227 2.2:-5025390 MS.gene052093:CDS
GAATCCGAGAGGTGCTGTTT+TGG 0.303272 2.2:-5025662 MS.gene052093:CDS
TGTTTGAGGTGAAGGAAAAT+TGG 0.305166 2.2:-5025270 MS.gene052093:CDS
TGGAAGGGTAGAATTCTATT+TGG 0.313548 2.2:-5025235 MS.gene052093:CDS
CATTCTAGGCACATGGGAAA+TGG 0.344559 2.2:-5025376 MS.gene052093:CDS
GATAGATCTTCCAAATTCAT+TGG 0.350686 2.2:-5025878 MS.gene052093:CDS
TTGGGAAAGTATCAAAGTTC+AGG 0.363131 2.2:-5025770 MS.gene052093:CDS
TGGGTTTAGATCTTTGAAAC+TGG 0.374406 2.2:-5025356 MS.gene052093:CDS
TCCTCAAACATCAACCTAAC+AGG 0.379387 2.2:+5025484 None:intergenic
ACCTGATGAGACAGTTGTTT+CGG 0.393796 2.2:-5025686 MS.gene052093:CDS
TAGCCTGTGAAGGCTGTGAT+AGG 0.399278 2.2:-5025429 MS.gene052093:CDS
GATGTTTGAGGAAGACGTTT+GGG 0.411150 2.2:-5025473 MS.gene052093:CDS
GCAATACCATTGCACTCAAA+AGG 0.411689 2.2:+5025799 None:intergenic
GAGTGAATGAAACAGGTCTT+AGG 0.420195 2.2:-5025852 MS.gene052093:CDS
TTGGAGAGAGTGAATGAAAC+AGG 0.438708 2.2:-5025859 MS.gene052093:CDS
GAAGCACGTTTAGCAGGAAC+TGG 0.446336 2.2:-5026159 MS.gene052093:CDS
TGATGTTTGAGGAAGACGTT+TGG 0.448987 2.2:-5025474 MS.gene052093:CDS
ATTCTAGGCACATGGGAAAT+GGG 0.456200 2.2:-5025375 MS.gene052093:CDS
GGTTATGGTTTCAAGTGGCT+TGG 0.456727 2.2:-5025958 MS.gene052093:CDS
TATCCCTGTGATCCTCAACT+TGG 0.460979 2.2:+5025897 None:intergenic
GCAGATTATAAATAAATTGA+AGG 0.461295 2.2:-5025329 MS.gene052093:CDS
TCCTGTTAGGTTGATGTTTG+AGG 0.467599 2.2:-5025485 MS.gene052093:CDS
TGCCATTGCATATATGTCTC+TGG 0.473005 2.2:+5025397 None:intergenic
GCGCTTGAAGCACGTTTAGC+AGG 0.476214 2.2:-5026165 MS.gene052093:CDS
TCCGAAACAACTGTCTCATC+AGG 0.480396 2.2:+5025685 None:intergenic
CCACCCAAGTTGAGGATCAC+AGG 0.486139 2.2:-5025901 MS.gene052093:CDS
TATCGTTTATCGAAAAGATC+TGG 0.498438 2.2:-5025928 MS.gene052093:CDS
TTGAATGTGAGGATCCTGTT+AGG 0.507367 2.2:-5025498 MS.gene052093:CDS
AAAATTGGATGCTACAAGGT+TGG 0.509330 2.2:-5025255 MS.gene052093:CDS
AACCCTATCACAGCCTTCAC+AGG 0.513850 2.2:+5025426 None:intergenic
CTAGTTGTGAAGGTCTATGC+TGG 0.523269 2.2:+5025196 None:intergenic
GGCATGCTGATGAATAAACT+TGG 0.547453 2.2:+5026073 None:intergenic
TTGGATGCTACAAGGTTGGA+AGG 0.548278 2.2:-5025251 MS.gene052093:CDS
CAGATTATAAATAAATTGAA+GGG 0.550775 2.2:-5025328 MS.gene052093:CDS
ATTCATAGCATTGTTAATGG+TGG 0.554304 2.2:-5025607 MS.gene052093:CDS
ATCCCTGTGATCCTCAACTT+GGG 0.558025 2.2:+5025898 None:intergenic
AGCCTGTGAAGGCTGTGATA+GGG 0.569110 2.2:-5025428 MS.gene052093:CDS
GCAATGGCATTCTAGGCACA+TGG 0.578087 2.2:-5025383 MS.gene052093:CDS
ATGTTTGAGGAAGACGTTTG+GGG 0.578234 2.2:-5025472 MS.gene052093:CDS
AAATCCAAAACAGCACCTCT+CGG 0.585044 2.2:+5025658 None:intergenic
GGCCAGAGACATATATGCAA+TGG 0.597570 2.2:-5025399 MS.gene052093:CDS
CACCCAAGTTGAGGATCACA+GGG 0.601694 2.2:-5025900 MS.gene052093:CDS
CGTTTATCGAAAAGATCTGG+TGG 0.602238 2.2:-5025925 MS.gene052093:CDS
AAGGAAAATTGGATGCTACA+AGG 0.606455 2.2:-5025259 MS.gene052093:CDS
CCTGTGATCCTCAACTTGGG+TGG 0.609546 2.2:+5025901 None:intergenic
GTGTTGGTTATGGTTTCAAG+TGG 0.612035 2.2:-5025963 MS.gene052093:CDS
TGTTTGAGGAAGACGTTTGG+GGG 0.623857 2.2:-5025471 MS.gene052093:CDS
CAATGGCATTCTAGGCACAT+GGG 0.638518 2.2:-5025382 MS.gene052093:CDS
TGGATGCTACAAGGTTGGAA+GGG 0.641743 2.2:-5025250 MS.gene052093:CDS
GTATGCTTTAACCATATCTG+CGG 0.649034 2.2:+5026095 None:intergenic
AAGGCTGTGATAGGGTTCAG+AGG 0.656517 2.2:-5025420 MS.gene052093:CDS
CTGGTGGGCCACCCAAGTTG+AGG 0.658509 2.2:-5025909 MS.gene052093:CDS
ATGAATGTTATAGCCTGTGA+AGG 0.667099 2.2:-5025439 MS.gene052093:CDS
TAACAACAATGTTGAATGTG+AGG 0.669855 2.2:-5025509 MS.gene052093:CDS
GTTTATCGAAAAGATCTGGT+GGG 0.689733 2.2:-5025924 MS.gene052093:CDS
GTTGTTTCGGAGAATCCGAG+AGG 0.745211 2.2:-5025673 MS.gene052093:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGCTATGAATAAATATATT+TGG + chr2.2:5025798-5025817 None:intergenic 15.0%
!! CAGATTATAAATAAATTGAA+GGG - chr2.2:5026086-5026105 MS.gene052093:CDS 15.0%
!! GCAGATTATAAATAAATTGA+AGG - chr2.2:5026085-5026104 MS.gene052093:CDS 20.0%
!! TTTATTCATAGCATTGTTAA+TGG - chr2.2:5025804-5025823 MS.gene052093:CDS 20.0%
!!! ATAATTGCAAGTTTTTCAAA+AGG + chr2.2:5025366-5025385 None:intergenic 20.0%
!!! TAATTGCAAGTTTTTCAAAA+GGG + chr2.2:5025365-5025384 None:intergenic 20.0%
! CAATGGTATTGCAAAAAATT+GGG - chr2.2:5025626-5025645 MS.gene052093:CDS 25.0%
! TTAAACCTTGTCACAAAAAA+AGG + chr2.2:5025843-5025862 None:intergenic 25.0%
!! AGTCTTCACATTATAGATTT+TGG - chr2.2:5025429-5025448 MS.gene052093:CDS 25.0%
!! TAATAGTGATTTTCTGTTTG+AGG - chr2.2:5026130-5026149 MS.gene052093:CDS 25.0%
!!! AAGTTCAGGATTTTAAGATT+AGG - chr2.2:5025658-5025677 MS.gene052093:CDS 25.0%
!!! TGTTTTGGATTTGATTAAGA+AGG - chr2.2:5025767-5025786 MS.gene052093:CDS 25.0%
!!! TTTTTTTGTGACAAGGTTTA+AGG - chr2.2:5025842-5025861 MS.gene052093:CDS 25.0%
AAAAATTGGGCACATTTCTT+TGG - chr2.2:5025222-5025241 MS.gene052093:CDS 30.0%
ATTCATAGCATTGTTAATGG+TGG - chr2.2:5025807-5025826 MS.gene052093:CDS 30.0%
GATAGATCTTCCAAATTCAT+TGG - chr2.2:5025536-5025555 MS.gene052093:CDS 30.0%
GCAATGGTATTGCAAAAAAT+TGG - chr2.2:5025625-5025644 MS.gene052093:CDS 30.0%
TAACAACAATGTTGAATGTG+AGG - chr2.2:5025905-5025924 MS.gene052093:CDS 30.0%
TATCGTTTATCGAAAAGATC+TGG - chr2.2:5025486-5025505 MS.gene052093:CDS 30.0%
!! CACATTATAGATTTTGGTGT+TGG - chr2.2:5025435-5025454 MS.gene052093:CDS 30.0%
!! TTCTATTTGGTTCTTCTTGT+TGG - chr2.2:5026192-5026211 MS.gene052093:CDS 30.0%
!!! ATAGATTTTGGTGTTGGTTA+TGG - chr2.2:5025441-5025460 MS.gene052093:CDS 30.0%
AAAATTGGATGCTACAAGGT+TGG - chr2.2:5026159-5026178 MS.gene052093:CDS 35.0%
AAGGAAAATTGGATGCTACA+AGG - chr2.2:5026155-5026174 MS.gene052093:CDS 35.0%
ATGAATGTTATAGCCTGTGA+AGG - chr2.2:5025975-5025994 MS.gene052093:CDS 35.0%
CATATATGCAATGGCATTCT+AGG - chr2.2:5026024-5026043 MS.gene052093:CDS 35.0%
GTATGCTTTAACCATATCTG+CGG + chr2.2:5025322-5025341 None:intergenic 35.0%
GTTTATCGAAAAGATCTGGT+GGG - chr2.2:5025490-5025509 MS.gene052093:CDS 35.0%
TGGAAGGGTAGAATTCTATT+TGG - chr2.2:5026179-5026198 MS.gene052093:CDS 35.0%
TTCACTCTCTCCAATGAATT+TGG + chr2.2:5025549-5025568 None:intergenic 35.0%
! GTGAAGACTTTCTGTTTCTT+TGG + chr2.2:5025418-5025437 None:intergenic 35.0%
! TGTTTGAGGTGAAGGAAAAT+TGG - chr2.2:5026144-5026163 MS.gene052093:CDS 35.0%
!! AATGTTCCTTTTGAGTGCAA+TGG - chr2.2:5025609-5025628 MS.gene052093:CDS 35.0%
!! TGATTTTCTGTTTGAGGTGA+AGG - chr2.2:5026136-5026155 MS.gene052093:CDS 35.0%
!! TGGGTTTAGATCTTTGAAAC+TGG - chr2.2:5026058-5026077 MS.gene052093:CDS 35.0%
!! TTGGGAAAGTATCAAAGTTC+AGG - chr2.2:5025644-5025663 MS.gene052093:CDS 35.0%
!!! ATGCACCTTTTTTTGTGACA+AGG - chr2.2:5025835-5025854 MS.gene052093:CDS 35.0%
AAATCCAAAACAGCACCTCT+CGG + chr2.2:5025759-5025778 None:intergenic 40.0%
ACCTGATGAGACAGTTGTTT+CGG - chr2.2:5025728-5025747 MS.gene052093:CDS 40.0%
ATGTTTGAGGAAGACGTTTG+GGG - chr2.2:5025942-5025961 MS.gene052093:CDS 40.0%
ATTCTAGGCACATGGGAAAT+GGG - chr2.2:5026039-5026058 MS.gene052093:CDS 40.0%
CGTTTATCGAAAAGATCTGG+TGG - chr2.2:5025489-5025508 MS.gene052093:CDS 40.0%
GAAAAAATCTGCCGCAGATA+TGG - chr2.2:5025308-5025327 MS.gene052093:CDS 40.0%
GAGTGAATGAAACAGGTCTT+AGG - chr2.2:5025562-5025581 MS.gene052093:CDS 40.0%
GATGTTTGAGGAAGACGTTT+GGG - chr2.2:5025941-5025960 MS.gene052093:CDS 40.0%
GCAATACCATTGCACTCAAA+AGG + chr2.2:5025618-5025637 None:intergenic 40.0%
GGCATGCTGATGAATAAACT+TGG + chr2.2:5025344-5025363 None:intergenic 40.0%
TCCTCAAACATCAACCTAAC+AGG + chr2.2:5025933-5025952 None:intergenic 40.0%
TGATGTTTGAGGAAGACGTT+TGG - chr2.2:5025940-5025959 MS.gene052093:CDS 40.0%
TGCCATTGCATATATGTCTC+TGG + chr2.2:5026020-5026039 None:intergenic 40.0%
TTCTTGTTGGATTCCAGCAT+AGG - chr2.2:5026205-5026224 MS.gene052093:CDS 40.0%
TTGAATGTGAGGATCCTGTT+AGG - chr2.2:5025916-5025935 MS.gene052093:CDS 40.0%
TTGGAGAGAGTGAATGAAAC+AGG - chr2.2:5025555-5025574 MS.gene052093:CDS 40.0%
!! GTGTTGGTTATGGTTTCAAG+TGG - chr2.2:5025451-5025470 MS.gene052093:CDS 40.0%
!! TCCTGTTAGGTTGATGTTTG+AGG - chr2.2:5025929-5025948 MS.gene052093:CDS 40.0%
!!! ATCTGCGGCAGATTTTTTCT+TGG + chr2.2:5025307-5025326 None:intergenic 40.0%
ATCCCTGTGATCCTCAACTT+GGG + chr2.2:5025519-5025538 None:intergenic 45.0%
CAATGGCATTCTAGGCACAT+GGG - chr2.2:5026032-5026051 MS.gene052093:CDS 45.0%
CATTCTAGGCACATGGGAAA+TGG - chr2.2:5026038-5026057 MS.gene052093:CDS 45.0%
GGCCAGAGACATATATGCAA+TGG - chr2.2:5026015-5026034 MS.gene052093:CDS 45.0%
TATCCCTGTGATCCTCAACT+TGG + chr2.2:5025520-5025539 None:intergenic 45.0%
TCCGAAACAACTGTCTCATC+AGG + chr2.2:5025732-5025751 None:intergenic 45.0%
TGGATGCTACAAGGTTGGAA+GGG - chr2.2:5026164-5026183 MS.gene052093:CDS 45.0%
TGTTTGAGGAAGACGTTTGG+GGG - chr2.2:5025943-5025962 MS.gene052093:CDS 45.0%
TTGGATGCTACAAGGTTGGA+AGG - chr2.2:5026163-5026182 MS.gene052093:CDS 45.0%
! GGTTATGGTTTCAAGTGGCT+TGG - chr2.2:5025456-5025475 MS.gene052093:CDS 45.0%
AACCCTATCACAGCCTTCAC+AGG + chr2.2:5025991-5026010 None:intergenic 50.0%
AAGGCTGTGATAGGGTTCAG+AGG - chr2.2:5025994-5026013 MS.gene052093:CDS 50.0%
AGCCTGTGAAGGCTGTGATA+GGG - chr2.2:5025986-5026005 MS.gene052093:CDS 50.0%
GAAGCACGTTTAGCAGGAAC+TGG - chr2.2:5025255-5025274 MS.gene052093:CDS 50.0%
GCAATGGCATTCTAGGCACA+TGG - chr2.2:5026031-5026050 MS.gene052093:CDS 50.0%
TAGCCTGTGAAGGCTGTGAT+AGG - chr2.2:5025985-5026004 MS.gene052093:CDS 50.0%
! CACCCAAGTTGAGGATCACA+GGG - chr2.2:5025514-5025533 MS.gene052093:CDS 50.0%
! GTTGTTTCGGAGAATCCGAG+AGG - chr2.2:5025741-5025760 MS.gene052093:CDS 50.0%
!!! GAATCCGAGAGGTGCTGTTT+TGG - chr2.2:5025752-5025771 MS.gene052093:CDS 50.0%
CCTGTGATCCTCAACTTGGG+TGG + chr2.2:5025516-5025535 None:intergenic 55.0%
GCGCTTGAAGCACGTTTAGC+AGG - chr2.2:5025249-5025268 MS.gene052093:CDS 55.0%
! CCACCCAAGTTGAGGATCAC+AGG - chr2.2:5025513-5025532 MS.gene052093:CDS 55.0%
! CTGGTGGGCCACCCAAGTTG+AGG - chr2.2:5025505-5025524 MS.gene052093:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 5025210 5026226 5025210 ID=MS.gene052093
chr2.2 mRNA 5025210 5026226 5025210 ID=MS.gene052093.t1;Parent=MS.gene052093
chr2.2 exon 5025210 5026226 5025210 ID=MS.gene052093.t1.exon1;Parent=MS.gene052093.t1
chr2.2 CDS 5025210 5026226 5025210 ID=cds.MS.gene052093.t1;Parent=MS.gene052093.t1
Gene Sequence

>MS.gene052093

GTGATGGAACTCAAAAATTGGGCACATTTCTTTGGAAATGCGCTTGAAGCACGTTTAGCAGGAACTGGTTCACATATCTATAGAGCTCTATCTTCCAAGAAAAAATCTGCCGCAGATATGGTTAAAGCATACCAAGTTTATTCATCAGCATGCCCTTTTGAAAAACTTGCAATTATGTTCTCAAACGATGCAATTTTGAATGTAACCAAAGAAACAGAAAGTCTTCACATTATAGATTTTGGTGTTGGTTATGGTTTCAAGTGGCTTGGTTTTATATATCGTTTATCGAAAAGATCTGGTGGGCCACCCAAGTTGAGGATCACAGGGATAGATCTTCCAAATTCATTGGAGAGAGTGAATGAAACAGGTCTTAGGCTTGCAAGTTATTGCAAACGTTTCAATGTTCCTTTTGAGTGCAATGGTATTGCAAAAAATTGGGAAAGTATCAAAGTTCAGGATTTTAAGATTAGGAAAAATGAGTTTGTTGCTGTGACTTGTGTGTTTAAGTTTGAGAATCTACCTGATGAGACAGTTGTTTCGGAGAATCCGAGAGGTGCTGTTTTGGATTTGATTAAGAAGGCAAATCCAAATATATTTATTCATAGCATTGTTAATGGTGGTTATGATGCACCTTTTTTTGTGACAAGGTTTAAGGAAGCTGTTTTTTATTATTCAGCATTGTTTGATATGCTTGATAACAACAATGTTGAATGTGAGGATCCTGTTAGGTTGATGTTTGAGGAAGACGTTTGGGGGAAAGATATAATGAATGTTATAGCCTGTGAAGGCTGTGATAGGGTTCAGAGGCCAGAGACATATATGCAATGGCATTCTAGGCACATGGGAAATGGGTTTAGATCTTTGAAACTGGATAAGCAGATTATAAATAAATTGAAGGGTAAGTTAAGAGATGATGCATATAATAGTGATTTTCTGTTTGAGGTGAAGGAAAATTGGATGCTACAAGGTTGGAAGGGTAGAATTCTATTTGGTTCTTCTTGTTGGATTCCAGCATAG
Protein sequence

>MS.gene052093.t1

VMELKNWAHFFGNALEARLAGTGSHIYRALSSKKKSAADMVKAYQVYSSACPFEKLAIMFSNDAILNVTKETESLHIIDFGVGYGFKWLGFIYRLSKRSGGPPKLRITGIDLPNSLERVNETGLRLASYCKRFNVPFECNGIAKNWESIKVQDFKIRKNEFVAVTCVFKFENLPDETVVSENPRGAVLDLIKKANPNIFIHSIVNGGYDAPFFVTRFKEAVFYYSALFDMLDNNNVECEDPVRLMFEEDVWGKDIMNVIACEGCDRVQRPETYMQWHSRHMGNGFRSLKLDKQIINKLKGKLRDDAYNSDFLFEVKENWMLQGWKGRILFGSSCWIPA