AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78421

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78421.t1 MTR_2g097390 94.643 448 23 1 1 447 196 643 0.0 880
MS.gene78421.t1 MTR_2g097350 87.723 448 54 1 1 447 195 642 0.0 811
MS.gene78421.t1 MTR_2g097310 88.196 449 45 4 1 447 198 640 0.0 810
MS.gene78421.t1 MTR_2g097380 79.195 447 50 4 1 447 160 563 0.0 714
MS.gene78421.t1 MTR_4g064160 60.586 444 161 7 15 447 246 686 0.0 538
MS.gene78421.t1 MTR_2g097410 50.572 437 200 7 24 447 310 743 1.51e-151 448
MS.gene78421.t1 MTR_4g064120 49.550 444 207 8 13 447 193 628 3.76e-150 441
MS.gene78421.t1 MTR_7g062120 50.597 419 195 6 34 447 331 742 5.90e-149 441
MS.gene78421.t1 MTR_4g064150 48.064 439 211 7 24 447 299 735 6.44e-147 436
MS.gene78421.t1 MTR_4g064180 48.649 444 211 8 13 447 193 628 4.18e-145 428
MS.gene78421.t1 MTR_2g097463 46.882 433 216 6 24 447 230 657 8.01e-140 416
MS.gene78421.t1 MTR_4g064200 46.552 464 214 8 8 447 199 652 2.08e-139 414
MS.gene78421.t1 MTR_2g097467 45.497 433 222 6 24 447 229 656 2.57e-135 404
MS.gene78421.t1 MTR_2g097473 45.287 435 224 6 22 447 227 656 6.50e-134 400
MS.gene78421.t1 MTR_5g097480 30.933 375 250 4 75 444 173 543 7.47e-64 215
MS.gene78421.t1 MTR_3g056110 31.316 380 242 7 75 444 171 541 5.52e-61 207
MS.gene78421.t1 MTR_4g133660 30.079 379 253 5 74 445 170 543 8.03e-61 207
MS.gene78421.t1 MTR_2g026250 29.765 383 258 5 70 444 216 595 6.16e-60 206
MS.gene78421.t1 MTR_2g082090 31.565 377 245 4 75 444 208 578 8.89e-59 202
MS.gene78421.t1 MTR_5g094450 30.789 380 248 8 75 444 157 531 2.94e-56 195
MS.gene78421.t1 MTR_3g089055 29.301 372 256 3 77 444 201 569 1.21e-55 194
MS.gene78421.t1 MTR_3g089055 29.301 372 256 3 77 444 196 564 1.31e-55 194
MS.gene78421.t1 MTR_1g029420 29.570 372 255 3 77 444 223 591 2.08e-54 191
MS.gene78421.t1 MTR_7g027190 30.711 394 234 8 74 444 295 672 4.72e-53 189
MS.gene78421.t1 MTR_3g065980 30.964 394 238 8 69 444 162 539 6.12e-46 167
MS.gene78421.t1 MTR_4g104020 28.010 382 254 8 76 444 146 519 1.61e-45 166
MS.gene78421.t1 MTR_8g442410 27.621 391 247 8 74 444 150 524 5.61e-45 164
MS.gene78421.t1 MTR_4g102790 26.166 386 261 9 75 446 288 663 8.71e-44 163
MS.gene78421.t1 MTR_7g074650 30.137 365 241 8 83 446 442 793 8.35e-43 161
MS.gene78421.t1 MTR_5g009080 24.658 438 264 9 68 444 45 477 2.20e-38 145
MS.gene78421.t1 MTR_3g022830 24.096 415 260 7 80 444 26 435 2.87e-37 141
MS.gene78421.t1 MTR_4g076140 24.485 437 265 9 68 444 37 468 1.07e-36 140
MS.gene78421.t1 MTR_4g077760 28.158 380 246 10 76 444 191 554 3.25e-33 132
MS.gene78421.t1 MTR_4g097080 24.615 390 258 10 77 446 131 504 5.27e-33 130
MS.gene78421.t1 MTR_1g096030 27.665 394 242 14 79 444 80 458 1.21e-31 126
MS.gene78421.t1 MTR_2g089100 26.456 412 248 10 76 447 49 445 8.09e-31 124
MS.gene78421.t1 MTR_2g034250 24.485 388 274 6 71 444 202 584 1.42e-30 124
MS.gene78421.t1 MTR_2g034260 24.359 390 271 8 71 444 202 583 1.49e-30 124
MS.gene78421.t1 MTR_5g015490 25.128 390 258 10 79 446 114 491 4.25e-30 122
MS.gene78421.t1 MTR_1g069725 27.177 379 254 11 71 444 101 462 7.23e-29 118
MS.gene78421.t1 MTR_7g109580 25.263 380 265 9 74 444 184 553 1.60e-28 118
MS.gene78421.t1 MTR_2g034280 23.575 386 277 7 71 444 195 574 3.92e-28 117
MS.gene78421.t1 MTR_4g076020 26.738 374 235 12 83 447 88 431 9.72e-28 115
MS.gene78421.t1 MTR_7g057230 26.804 291 194 6 164 444 375 656 6.26e-27 114
MS.gene78421.t1 MTR_5g058860 25.641 429 267 18 43 444 93 496 7.01e-24 104
MS.gene78421.t1 MTR_6g047750 24.603 378 260 10 80 444 296 661 1.05e-23 104
MS.gene78421.t1 MTR_4g095500 22.642 424 267 10 76 447 56 470 6.29e-22 98.2
MS.gene78421.t1 MTR_2g099110 26.667 390 253 10 79 446 74 452 6.37e-22 98.2
MS.gene78421.t1 MTR_1g086970 23.785 391 264 14 74 444 101 477 6.66e-22 98.2
MS.gene78421.t1 MTR_3g072710 24.505 404 253 16 74 444 115 499 1.72e-21 97.4
MS.gene78421.t1 MTR_5g015950 21.127 426 273 9 76 447 32 448 6.52e-21 95.1
MS.gene78421.t1 MTR_3g053270 21.127 426 273 9 76 447 32 448 6.52e-21 95.1
MS.gene78421.t1 MTR_8g093070 22.500 400 277 14 60 447 120 498 1.70e-17 85.1
MS.gene78421.t1 MTR_0092s0100 24.074 378 251 11 80 444 373 727 3.78e-17 84.3
MS.gene78421.t1 MTR_0092s0100 24.074 378 251 11 80 444 376 730 4.61e-17 84.3
MS.gene78421.t1 MTR_4g026485 23.733 375 255 12 80 444 270 623 2.74e-16 81.6
MS.gene78421.t1 MTR_8g020840 25.391 256 147 10 79 297 171 419 9.09e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78421.t1 AT1G07530 51.082 462 203 8 5 447 310 767 1.38e-162 478
MS.gene78421.t1 AT2G29060 48.690 458 218 6 5 446 200 656 7.58e-160 467
MS.gene78421.t1 AT2G29060 48.690 458 218 6 5 446 237 693 5.65e-159 466
MS.gene78421.t1 AT1G07520 48.506 435 210 7 23 447 101 531 6.01e-143 419
MS.gene78421.t1 AT1G07520 48.506 435 210 7 23 447 101 531 6.01e-143 419
MS.gene78421.t1 AT1G07520 48.506 435 210 7 23 447 265 695 5.12e-141 420
MS.gene78421.t1 AT1G07520 48.506 435 210 7 23 447 266 696 5.94e-141 419
MS.gene78421.t1 AT2G29065 48.741 437 210 8 24 447 195 630 2.62e-137 408
MS.gene78421.t1 AT2G37650 48.158 380 189 4 71 446 327 702 1.67e-125 380
MS.gene78421.t1 AT2G37650 48.158 380 189 4 71 446 339 714 2.89e-125 380
MS.gene78421.t1 AT3G46600 43.294 425 231 5 27 447 131 549 3.24e-120 362
MS.gene78421.t1 AT3G46600 43.294 425 231 5 27 447 163 581 9.02e-120 362
MS.gene78421.t1 AT5G59450 40.044 457 260 6 3 447 146 600 2.12e-117 356
MS.gene78421.t1 AT3G46600 45.213 376 199 4 76 447 1 373 3.53e-115 343
MS.gene78421.t1 AT5G48150 33.067 375 243 5 75 444 118 489 1.84e-67 223
MS.gene78421.t1 AT5G48150 33.067 375 243 5 75 444 118 489 1.84e-67 223
MS.gene78421.t1 AT5G48150 33.067 375 243 5 75 444 118 489 1.84e-67 223
MS.gene78421.t1 AT5G48150 33.067 375 243 5 75 444 118 489 1.84e-67 223
MS.gene78421.t1 AT2G04890 31.551 374 242 4 75 444 49 412 1.38e-66 219
MS.gene78421.t1 AT1G50600 31.078 399 260 5 53 444 135 525 2.74e-62 211
MS.gene78421.t1 AT1G50600 31.078 399 260 5 53 444 210 600 1.16e-61 211
MS.gene78421.t1 AT1G50600 31.078 399 260 5 53 444 206 596 1.25e-61 211
MS.gene78421.t1 AT1G21450 30.491 387 252 8 69 444 212 592 4.79e-55 193
MS.gene78421.t1 AT4G17230 28.912 377 261 3 74 446 153 526 1.36e-50 179
MS.gene78421.t1 AT4G17230 28.912 377 261 3 74 446 153 526 1.36e-50 179
MS.gene78421.t1 AT1G66350 31.070 383 235 10 69 444 145 505 3.35e-46 167
MS.gene78421.t1 AT2G01570 30.829 386 238 11 69 444 214 580 2.41e-45 166
MS.gene78421.t1 AT3G54220 31.169 385 248 9 66 446 280 651 1.13e-44 165
MS.gene78421.t1 AT3G03450 28.500 400 260 9 57 444 159 544 1.31e-44 164
MS.gene78421.t1 AT1G14920 29.058 382 250 8 69 444 162 528 2.96e-44 162
MS.gene78421.t1 AT5G17490 26.984 378 258 7 71 444 152 515 2.35e-42 157
MS.gene78421.t1 AT1G50420 22.664 428 263 9 79 444 57 478 4.38e-35 136
MS.gene78421.t1 AT5G66770 29.333 375 237 12 83 444 224 583 1.17e-34 136
MS.gene78421.t1 AT1G63100 27.966 354 234 9 75 419 248 589 4.98e-33 132
MS.gene78421.t1 AT1G63100 27.966 354 234 9 75 419 273 614 5.29e-33 132
MS.gene78421.t1 AT5G41920 29.275 386 236 14 73 444 37 399 1.40e-31 125
MS.gene78421.t1 AT4G37650 25.000 360 236 9 78 412 145 495 1.99e-29 120
MS.gene78421.t1 AT3G50650 26.171 363 235 10 99 444 195 541 7.41e-29 119
MS.gene78421.t1 AT5G52510 24.165 389 259 9 77 444 266 639 1.60e-27 115
MS.gene78421.t1 AT1G55580 25.604 414 253 11 76 444 41 444 2.62e-23 102
MS.gene78421.t1 AT3G49950 23.846 390 271 9 76 446 27 409 5.22e-23 100
MS.gene78421.t1 AT4G08250 23.846 390 271 12 71 444 97 476 9.39e-23 100
MS.gene78421.t1 AT3G60630 28.571 210 125 8 150 345 327 525 6.34e-12 68.2

Find 76 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTCTCTCCAATGAATT+TGG 0.151096 2.3:+5582250 None:intergenic
AGTCTTCACATTATAGATTT+TGG 0.160984 2.3:-5582367 MS.gene78421:CDS
TCTTAATCTGGTTTAATAAT+TGG 0.162293 2.3:+5582626 None:intergenic
ATGCTATGAATAAATATATT+TGG 0.170780 2.3:+5582001 None:intergenic
TTTCTCAATGTGTCACAAAA+TGG 0.237333 2.3:-5582889 MS.gene78421:CDS
TTTATTCATAGCATTGTTAA+TGG 0.248656 2.3:-5581992 MS.gene78421:CDS
GTGAAGACTTTCTGTTTCTT+TGG 0.249798 2.3:+5582381 None:intergenic
TTCTATTTGGTTCTTCTTGT+TGG 0.254378 2.3:-5581604 MS.gene78421:CDS
TAGAAGAATGTTTCTTAATC+TGG 0.256983 2.3:+5582614 None:intergenic
CAAACAGATTCTATCGTTCT+AGG 0.263554 2.3:-5582738 MS.gene78421:CDS
CATATATGCAATGGCATTCT+AGG 0.264227 2.3:-5581772 MS.gene78421:CDS
TTTGATAAAGTACTAGTTCT+TGG 0.268048 2.3:-5582820 MS.gene78421:CDS
TGAAATATCATTACAAGAAA+TGG 0.276552 2.3:+5582657 None:intergenic
GAATCCGAGAGGTGCTGTTT+TGG 0.303272 2.3:-5582044 MS.gene78421:CDS
TGTTTGAGGTGAAGGAAAAT+TGG 0.305166 2.3:-5581652 MS.gene78421:CDS
TGGAAGGGTAGAATTCTATT+TGG 0.313548 2.3:-5581617 MS.gene78421:CDS
CATTCTAGGCACATGGGAAA+TGG 0.344559 2.3:-5581758 MS.gene78421:CDS
GATAGATCTTCCAAATTCAT+TGG 0.350686 2.3:-5582260 MS.gene78421:CDS
TTGGGAAAGTATCAAAGTTC+AGG 0.363131 2.3:-5582152 MS.gene78421:CDS
TGGGTTTAGATCTTTGAAAC+TGG 0.374406 2.3:-5581738 MS.gene78421:CDS
TTGATGATTCTTCATTCTGC+TGG 0.378672 2.3:+5582758 None:intergenic
TCCTCAAACATCAACCTAAC+AGG 0.379387 2.3:+5581866 None:intergenic
ACCTGATGAGACAGTTGTTT+CGG 0.393796 2.3:-5582068 MS.gene78421:CDS
TAGCCTGTGAAGGCTGTGAT+AGG 0.399278 2.3:-5581811 MS.gene78421:CDS
CTTGGTACTAAATTCACAAA+AGG 0.404219 2.3:-5582802 MS.gene78421:CDS
GATGTTTGAGGAAGACGTTT+GGG 0.411150 2.3:-5581855 MS.gene78421:CDS
GCAATACCATTGCACTCAAA+AGG 0.411689 2.3:+5582181 None:intergenic
AAGAAACATTCTTCTACAAC+AGG 0.417986 2.3:-5582607 MS.gene78421:CDS
GAGTGAATGAAACAGGTCTT+AGG 0.420195 2.3:-5582234 MS.gene78421:CDS
TTGGAGAGAGTGAATGAAAC+AGG 0.438708 2.3:-5582241 MS.gene78421:CDS
ATGAGGAAGTTGTGGATTTG+AGG 0.441434 2.3:-5582705 MS.gene78421:CDS
GAAGCACGTTTAGCAGGAAC+TGG 0.446336 2.3:-5582541 MS.gene78421:CDS
TGATGTTTGAGGAAGACGTT+TGG 0.448987 2.3:-5581856 MS.gene78421:CDS
ATTCTAGGCACATGGGAAAT+GGG 0.456200 2.3:-5581757 MS.gene78421:CDS
GGTTATGGTTTCAAGTGGCT+TGG 0.456727 2.3:-5582340 MS.gene78421:CDS
TATCCCTGTGATCCTCAACT+TGG 0.460979 2.3:+5582279 None:intergenic
GCAGATTATAAATAAATTGA+AGG 0.461295 2.3:-5581711 MS.gene78421:CDS
TCCTGTTAGGTTGATGTTTG+AGG 0.467599 2.3:-5581867 MS.gene78421:CDS
TGCCATTGCATATATGTCTC+TGG 0.473005 2.3:+5581779 None:intergenic
GCGCTTGAAGCACGTTTAGC+AGG 0.476214 2.3:-5582547 MS.gene78421:CDS
TCCGAAACAACTGTCTCATC+AGG 0.480396 2.3:+5582067 None:intergenic
CCACCCAAGTTGAGGATCAC+AGG 0.486139 2.3:-5582283 MS.gene78421:CDS
TATCGTTTATCGAAAAGATC+TGG 0.498438 2.3:-5582310 MS.gene78421:CDS
TTCTAGGAAACGAAGTTATG+AGG 0.503468 2.3:-5582722 MS.gene78421:CDS
TTGAATGTGAGGATCCTGTT+AGG 0.507367 2.3:-5581880 MS.gene78421:CDS
AAAATTGGATGCTACAAGGT+TGG 0.509330 2.3:-5581637 MS.gene78421:CDS
TTGGTACTAAATTCACAAAA+GGG 0.510419 2.3:-5582801 MS.gene78421:CDS
AACCCTATCACAGCCTTCAC+AGG 0.513850 2.3:+5581808 None:intergenic
CTAGTTGTGAAGGTCTATGC+TGG 0.523269 2.3:+5581578 None:intergenic
ACGAAGTTATGAGGAAGTTG+TGG 0.528730 2.3:-5582713 MS.gene78421:CDS
CATTCTTCTACAACAGGTGA+TGG 0.532486 2.3:-5582601 MS.gene78421:CDS
GGCATGCTGATGAATAAACT+TGG 0.547453 2.3:+5582455 None:intergenic
TTGGATGCTACAAGGTTGGA+AGG 0.548278 2.3:-5581633 MS.gene78421:CDS
CAGATTATAAATAAATTGAA+GGG 0.550775 2.3:-5581710 MS.gene78421:CDS
ATTCATAGCATTGTTAATGG+TGG 0.554304 2.3:-5581989 MS.gene78421:CDS
ATCCCTGTGATCCTCAACTT+GGG 0.558025 2.3:+5582280 None:intergenic
AGCCTGTGAAGGCTGTGATA+GGG 0.569110 2.3:-5581810 MS.gene78421:CDS
GCAATGGCATTCTAGGCACA+TGG 0.578087 2.3:-5581765 MS.gene78421:CDS
ATGTTTGAGGAAGACGTTTG+GGG 0.578234 2.3:-5581854 MS.gene78421:CDS
AAATCCAAAACAGCACCTCT+CGG 0.585044 2.3:+5582040 None:intergenic
GGCCAGAGACATATATGCAA+TGG 0.597570 2.3:-5581781 MS.gene78421:CDS
CACCCAAGTTGAGGATCACA+GGG 0.601694 2.3:-5582282 MS.gene78421:CDS
CGTTTATCGAAAAGATCTGG+TGG 0.602238 2.3:-5582307 MS.gene78421:CDS
AAGGAAAATTGGATGCTACA+AGG 0.606455 2.3:-5581641 MS.gene78421:CDS
CCTGTGATCCTCAACTTGGG+TGG 0.609546 2.3:+5582283 None:intergenic
GTGTTGGTTATGGTTTCAAG+TGG 0.612035 2.3:-5582345 MS.gene78421:CDS
TGTTTGAGGAAGACGTTTGG+GGG 0.623857 2.3:-5581853 MS.gene78421:CDS
CAATGGCATTCTAGGCACAT+GGG 0.638518 2.3:-5581764 MS.gene78421:CDS
TGGATGCTACAAGGTTGGAA+GGG 0.641743 2.3:-5581632 MS.gene78421:CDS
GTATGCTTTAACCATATCTG+CGG 0.649034 2.3:+5582477 None:intergenic
AAGGCTGTGATAGGGTTCAG+AGG 0.656517 2.3:-5581802 MS.gene78421:CDS
CTGGTGGGCCACCCAAGTTG+AGG 0.658509 2.3:-5582291 MS.gene78421:CDS
ATGAATGTTATAGCCTGTGA+AGG 0.667099 2.3:-5581821 MS.gene78421:CDS
TAACAACAATGTTGAATGTG+AGG 0.669855 2.3:-5581891 MS.gene78421:CDS
GTTTATCGAAAAGATCTGGT+GGG 0.689733 2.3:-5582306 MS.gene78421:CDS
GTTGTTTCGGAGAATCCGAG+AGG 0.745211 2.3:-5582055 MS.gene78421:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGCTATGAATAAATATATT+TGG + chr2.3:5582507-5582526 None:intergenic 15.0%
!! CAGATTATAAATAAATTGAA+GGG - chr2.3:5582795-5582814 MS.gene78421:CDS 15.0%
!! GCAGATTATAAATAAATTGA+AGG - chr2.3:5582794-5582813 MS.gene78421:CDS 20.0%
!! TGAAATATCATTACAAGAAA+TGG + chr2.3:5581851-5581870 None:intergenic 20.0%
!! TTTATTCATAGCATTGTTAA+TGG - chr2.3:5582513-5582532 MS.gene78421:CDS 20.0%
!!! ATAATTGCAAGTTTTTCAAA+AGG + chr2.3:5582075-5582094 None:intergenic 20.0%
!!! TAATTGCAAGTTTTTCAAAA+GGG + chr2.3:5582074-5582093 None:intergenic 20.0%
!!! TCTTAATCTGGTTTAATAAT+TGG + chr2.3:5581882-5581901 None:intergenic 20.0%
! CAATGGTATTGCAAAAAATT+GGG - chr2.3:5582335-5582354 MS.gene78421:CDS 25.0%
! TAGAAGAATGTTTCTTAATC+TGG + chr2.3:5581894-5581913 None:intergenic 25.0%
! TTAAACCTTGTCACAAAAAA+AGG + chr2.3:5582552-5582571 None:intergenic 25.0%
! TTGGTACTAAATTCACAAAA+GGG - chr2.3:5581704-5581723 MS.gene78421:CDS 25.0%
!! AGTCTTCACATTATAGATTT+TGG - chr2.3:5582138-5582157 MS.gene78421:CDS 25.0%
!! TAATAGTGATTTTCTGTTTG+AGG - chr2.3:5582839-5582858 MS.gene78421:CDS 25.0%
!! TTTGATAAAGTACTAGTTCT+TGG - chr2.3:5581685-5581704 MS.gene78421:CDS 25.0%
!!! AAGTTCAGGATTTTAAGATT+AGG - chr2.3:5582367-5582386 MS.gene78421:CDS 25.0%
!!! TGTTTTGGATTTGATTAAGA+AGG - chr2.3:5582476-5582495 MS.gene78421:CDS 25.0%
!!! TTTTTTTGTGACAAGGTTTA+AGG - chr2.3:5582551-5582570 MS.gene78421:CDS 25.0%
AAGAAACATTCTTCTACAAC+AGG - chr2.3:5581898-5581917 MS.gene78421:CDS 30.0%
ATTCATAGCATTGTTAATGG+TGG - chr2.3:5582516-5582535 MS.gene78421:CDS 30.0%
CAAAAATTGGCACATTTCTT+TGG - chr2.3:5581931-5581950 MS.gene78421:CDS 30.0%
CTTGGTACTAAATTCACAAA+AGG - chr2.3:5581703-5581722 MS.gene78421:CDS 30.0%
GATAGATCTTCCAAATTCAT+TGG - chr2.3:5582245-5582264 MS.gene78421:CDS 30.0%
GCAATGGTATTGCAAAAAAT+TGG - chr2.3:5582334-5582353 MS.gene78421:CDS 30.0%
TAACAACAATGTTGAATGTG+AGG - chr2.3:5582614-5582633 MS.gene78421:CDS 30.0%
TATCGTTTATCGAAAAGATC+TGG - chr2.3:5582195-5582214 MS.gene78421:CDS 30.0%
TTTCTCAATGTGTCACAAAA+TGG - chr2.3:5581616-5581635 MS.gene78421:CDS 30.0%
!! CACATTATAGATTTTGGTGT+TGG - chr2.3:5582144-5582163 MS.gene78421:CDS 30.0%
!! TTCTATTTGGTTCTTCTTGT+TGG - chr2.3:5582901-5582920 MS.gene78421:CDS 30.0%
!!! ATAGATTTTGGTGTTGGTTA+TGG - chr2.3:5582150-5582169 MS.gene78421:CDS 30.0%
AAAATTGGATGCTACAAGGT+TGG - chr2.3:5582868-5582887 MS.gene78421:CDS 35.0%
AAGGAAAATTGGATGCTACA+AGG - chr2.3:5582864-5582883 MS.gene78421:CDS 35.0%
ATGAATGTTATAGCCTGTGA+AGG - chr2.3:5582684-5582703 MS.gene78421:CDS 35.0%
CAAACAGATTCTATCGTTCT+AGG - chr2.3:5581767-5581786 MS.gene78421:CDS 35.0%
CATATATGCAATGGCATTCT+AGG - chr2.3:5582733-5582752 MS.gene78421:CDS 35.0%
GTATGCTTTAACCATATCTG+CGG + chr2.3:5582031-5582050 None:intergenic 35.0%
GTTTATCGAAAAGATCTGGT+GGG - chr2.3:5582199-5582218 MS.gene78421:CDS 35.0%
TGGAAGGGTAGAATTCTATT+TGG - chr2.3:5582888-5582907 MS.gene78421:CDS 35.0%
TTCACTCTCTCCAATGAATT+TGG + chr2.3:5582258-5582277 None:intergenic 35.0%
! GTGAAGACTTTCTGTTTCTT+TGG + chr2.3:5582127-5582146 None:intergenic 35.0%
! TGTTTGAGGTGAAGGAAAAT+TGG - chr2.3:5582853-5582872 MS.gene78421:CDS 35.0%
! TTCTAGGAAACGAAGTTATG+AGG - chr2.3:5581783-5581802 MS.gene78421:CDS 35.0%
! TTGATGATTCTTCATTCTGC+TGG + chr2.3:5581750-5581769 None:intergenic 35.0%
!! AATGTTCCTTTTGAGTGCAA+TGG - chr2.3:5582318-5582337 MS.gene78421:CDS 35.0%
!! AGGTGATGGAACTCAAAAAT+TGG - chr2.3:5581918-5581937 MS.gene78421:CDS 35.0%
!! TGATTTTCTGTTTGAGGTGA+AGG - chr2.3:5582845-5582864 MS.gene78421:CDS 35.0%
!! TGGGTTTAGATCTTTGAAAC+TGG - chr2.3:5582767-5582786 MS.gene78421:CDS 35.0%
!! TTGGGAAAGTATCAAAGTTC+AGG - chr2.3:5582353-5582372 MS.gene78421:CDS 35.0%
!!! ATGCACCTTTTTTTGTGACA+AGG - chr2.3:5582544-5582563 MS.gene78421:CDS 35.0%
AAATCCAAAACAGCACCTCT+CGG + chr2.3:5582468-5582487 None:intergenic 40.0%
ACCTGATGAGACAGTTGTTT+CGG - chr2.3:5582437-5582456 MS.gene78421:CDS 40.0%
ACGAAGTTATGAGGAAGTTG+TGG - chr2.3:5581792-5581811 MS.gene78421:CDS 40.0%
ATGAGGAAGTTGTGGATTTG+AGG - chr2.3:5581800-5581819 MS.gene78421:CDS 40.0%
ATGTTTGAGGAAGACGTTTG+GGG - chr2.3:5582651-5582670 MS.gene78421:CDS 40.0%
ATTCTAGGCACATGGGAAAT+GGG - chr2.3:5582748-5582767 MS.gene78421:CDS 40.0%
CATTCTTCTACAACAGGTGA+TGG - chr2.3:5581904-5581923 MS.gene78421:CDS 40.0%
CGTTTATCGAAAAGATCTGG+TGG - chr2.3:5582198-5582217 MS.gene78421:CDS 40.0%
GAAAAAATCTGCCGCAGATA+TGG - chr2.3:5582017-5582036 MS.gene78421:CDS 40.0%
GAGTGAATGAAACAGGTCTT+AGG - chr2.3:5582271-5582290 MS.gene78421:CDS 40.0%
GATGTTTGAGGAAGACGTTT+GGG - chr2.3:5582650-5582669 MS.gene78421:CDS 40.0%
GCAATACCATTGCACTCAAA+AGG + chr2.3:5582327-5582346 None:intergenic 40.0%
GGCATGCTGATGAATAAACT+TGG + chr2.3:5582053-5582072 None:intergenic 40.0%
TCCTCAAACATCAACCTAAC+AGG + chr2.3:5582642-5582661 None:intergenic 40.0%
TGATGTTTGAGGAAGACGTT+TGG - chr2.3:5582649-5582668 MS.gene78421:CDS 40.0%
TGCCATTGCATATATGTCTC+TGG + chr2.3:5582729-5582748 None:intergenic 40.0%
TTGAATGTGAGGATCCTGTT+AGG - chr2.3:5582625-5582644 MS.gene78421:CDS 40.0%
TTGGAGAGAGTGAATGAAAC+AGG - chr2.3:5582264-5582283 MS.gene78421:CDS 40.0%
!! GTGTTGGTTATGGTTTCAAG+TGG - chr2.3:5582160-5582179 MS.gene78421:CDS 40.0%
!! TCCTGTTAGGTTGATGTTTG+AGG - chr2.3:5582638-5582657 MS.gene78421:CDS 40.0%
!!! ATCTGCGGCAGATTTTTTCT+TGG + chr2.3:5582016-5582035 None:intergenic 40.0%
!!! TGGAAGCTTGTGTTTTGAAG+TGG + chr2.3:5581730-5581749 None:intergenic 40.0%
ATCCCTGTGATCCTCAACTT+GGG + chr2.3:5582228-5582247 None:intergenic 45.0%
CAATGGCATTCTAGGCACAT+GGG - chr2.3:5582741-5582760 MS.gene78421:CDS 45.0%
CATTCTAGGCACATGGGAAA+TGG - chr2.3:5582747-5582766 MS.gene78421:CDS 45.0%
GGCCAGAGACATATATGCAA+TGG - chr2.3:5582724-5582743 MS.gene78421:CDS 45.0%
TATCCCTGTGATCCTCAACT+TGG + chr2.3:5582229-5582248 None:intergenic 45.0%
TCCGAAACAACTGTCTCATC+AGG + chr2.3:5582441-5582460 None:intergenic 45.0%
TGGATGCTACAAGGTTGGAA+GGG - chr2.3:5582873-5582892 MS.gene78421:CDS 45.0%
TGTTTGAGGAAGACGTTTGG+GGG - chr2.3:5582652-5582671 MS.gene78421:CDS 45.0%
TTGGATGCTACAAGGTTGGA+AGG - chr2.3:5582872-5582891 MS.gene78421:CDS 45.0%
! GGTTATGGTTTCAAGTGGCT+TGG - chr2.3:5582165-5582184 MS.gene78421:CDS 45.0%
AACCCTATCACAGCCTTCAC+AGG + chr2.3:5582700-5582719 None:intergenic 50.0%
AAGGCTGTGATAGGGTTCAG+AGG - chr2.3:5582703-5582722 MS.gene78421:CDS 50.0%
AGCCTGTGAAGGCTGTGATA+GGG - chr2.3:5582695-5582714 MS.gene78421:CDS 50.0%
GAAGCACGTTTAGCAGGAAC+TGG - chr2.3:5581964-5581983 MS.gene78421:CDS 50.0%
GCAATGGCATTCTAGGCACA+TGG - chr2.3:5582740-5582759 MS.gene78421:CDS 50.0%
TAGCCTGTGAAGGCTGTGAT+AGG - chr2.3:5582694-5582713 MS.gene78421:CDS 50.0%
! CACCCAAGTTGAGGATCACA+GGG - chr2.3:5582223-5582242 MS.gene78421:CDS 50.0%
! GTTGTTTCGGAGAATCCGAG+AGG - chr2.3:5582450-5582469 MS.gene78421:CDS 50.0%
!!! GAATCCGAGAGGTGCTGTTT+TGG - chr2.3:5582461-5582480 MS.gene78421:CDS 50.0%
CCTGTGATCCTCAACTTGGG+TGG + chr2.3:5582225-5582244 None:intergenic 55.0%
GCGCTTGAAGCACGTTTAGC+AGG - chr2.3:5581958-5581977 MS.gene78421:CDS 55.0%
! CCACCCAAGTTGAGGATCAC+AGG - chr2.3:5582222-5582241 MS.gene78421:CDS 55.0%
! CTGGTGGGCCACCCAAGTTG+AGG - chr2.3:5582214-5582233 MS.gene78421:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 5581592 5582935 5581592 ID=MS.gene78421
chr2.3 mRNA 5581592 5582935 5581592 ID=MS.gene78421.t1;Parent=MS.gene78421
chr2.3 exon 5581592 5582935 5581592 ID=MS.gene78421.t1.exon1;Parent=MS.gene78421.t1
chr2.3 CDS 5581592 5582935 5581592 ID=cds.MS.gene78421.t1;Parent=MS.gene78421.t1
Gene Sequence

>MS.gene78421

ACAGAAAACTTTGAAAAAGAGCATTTTCTCAATGTGTCACAAAATGGATCAGAACAAGTGTATGTAGATGATAGCAGTGAGTTATCAGAATTATTTGATAAAGTACTAGTTCTTGGTACTAAATTCACAAAAGGGCCACTTCAAAACACAAGCTTCCAGCAGAATGAAGAATCATCAAACAGATTCTATCGTTCTAGGAAACGAAGTTATGAGGAAGTTGTGGATTTGAGGACACTATTGATGCTGTGTGCACAATCCATTTCTTGTAATGATATTTCAAATGCTAACCAATTATTAAACCAGATTAAGAAACATTCTTCTACAACAGGTGATGGAACTCAAAAATTGGCACATTTCTTTGGAAATGCGCTTGAAGCACGTTTAGCAGGAACTGGTTCACATATCTATAGAGCTCTATCTTCCAAGAAAAAATCTGCCGCAGATATGGTTAAAGCATACCAAGTTTATTCATCAGCATGCCCTTTTGAAAAACTTGCAATTATGTTCTCAAACGATGCAATTTTGAATGTAACCAAAGAAACAGAAAGTCTTCACATTATAGATTTTGGTGTTGGTTATGGTTTCAAGTGGCTTGGTTTTATATATCGTTTATCGAAAAGATCTGGTGGGCCACCCAAGTTGAGGATCACAGGGATAGATCTTCCAAATTCATTGGAGAGAGTGAATGAAACAGGTCTTAGGCTTGCAAGTTATTGCAAACGTTTCAATGTTCCTTTTGAGTGCAATGGTATTGCAAAAAATTGGGAAAGTATCAAAGTTCAGGATTTTAAGATTAGGAAAAATGAGTTTGTTGCTGTGACTTGTGTGTTTAAGTTTGAGAATCTACCTGATGAGACAGTTGTTTCGGAGAATCCGAGAGGTGCTGTTTTGGATTTGATTAAGAAGGCAAATCCAAATATATTTATTCATAGCATTGTTAATGGTGGTTATGATGCACCTTTTTTTGTGACAAGGTTTAAGGAAGCTGTTTTTTATTATTCAGCATTGTTTGATATGCTTGATAACAACAATGTTGAATGTGAGGATCCTGTTAGGTTGATGTTTGAGGAAGACGTTTGGGGGAAAGATATAATGAATGTTATAGCCTGTGAAGGCTGTGATAGGGTTCAGAGGCCAGAGACATATATGCAATGGCATTCTAGGCACATGGGAAATGGGTTTAGATCTTTGAAACTGGATAAGCAGATTATAAATAAATTGAAGGGTAAGTTAAGAGATGATGCATATAATAGTGATTTTCTGTTTGAGGTGAAGGAAAATTGGATGCTACAAGGTTGGAAGGGTAGAATTCTATTTGGTTCTTCTTGTTGGATTCCAGCATAG
Protein sequence

>MS.gene78421.t1

TENFEKEHFLNVSQNGSEQVYVDDSSELSELFDKVLVLGTKFTKGPLQNTSFQQNEESSNRFYRSRKRSYEEVVDLRTLLMLCAQSISCNDISNANQLLNQIKKHSSTTGDGTQKLAHFFGNALEARLAGTGSHIYRALSSKKKSAADMVKAYQVYSSACPFEKLAIMFSNDAILNVTKETESLHIIDFGVGYGFKWLGFIYRLSKRSGGPPKLRITGIDLPNSLERVNETGLRLASYCKRFNVPFECNGIAKNWESIKVQDFKIRKNEFVAVTCVFKFENLPDETVVSENPRGAVLDLIKKANPNIFIHSIVNGGYDAPFFVTRFKEAVFYYSALFDMLDNNNVECEDPVRLMFEEDVWGKDIMNVIACEGCDRVQRPETYMQWHSRHMGNGFRSLKLDKQIINKLKGKLRDDAYNSDFLFEVKENWMLQGWKGRILFGSSCWIPA