Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052098.t1 | XP_003597364.2 | 94.6 | 727 | 38 | 1 | 1 | 726 | 1 | 727 | 0.00E+00 | 1300 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052098.t1 | Q6R0E3 | 48.6 | 502 | 188 | 13 | 234 | 713 | 163 | 616 | 1.5e-95 | 352.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052098.t1 | G7IHQ2 | 94.6 | 727 | 38 | 1 | 1 | 726 | 1 | 727 | 0.0e+00 | 1300.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052098 | MS.gene064140 | 0.827475 | 1.53E-54 | -1.69E-46 |
| MS.gene052098 | MS.gene31135 | 0.924883 | 3.88E-90 | -1.69E-46 |
| MS.gene052098 | MS.gene45515 | 0.83948 | 1.55E-57 | -1.69E-46 |
| MS.gene052098 | MS.gene68633 | 0.829747 | 4.33E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052098.t1 | MTR_2g097290 | 96.561 | 727 | 24 | 1 | 1 | 726 | 1 | 727 | 0.0 | 1457 |
| MS.gene052098.t1 | MTR_2g097290 | 96.142 | 648 | 24 | 1 | 1 | 647 | 1 | 648 | 0.0 | 1282 |
| MS.gene052098.t1 | MTR_2g097290 | 96.053 | 456 | 17 | 1 | 1 | 455 | 1 | 456 | 0.0 | 905 |
| MS.gene052098.t1 | MTR_3g067935 | 44.720 | 483 | 228 | 10 | 248 | 725 | 183 | 631 | 1.66e-110 | 349 |
| MS.gene052098.t1 | MTR_5g080010 | 44.979 | 478 | 223 | 10 | 252 | 718 | 157 | 605 | 1.77e-102 | 327 |
| MS.gene052098.t1 | MTR_7g061840 | 44.615 | 455 | 191 | 12 | 269 | 709 | 196 | 603 | 1.18e-97 | 314 |
| MS.gene052098.t1 | MTR_7g061840 | 41.346 | 104 | 50 | 4 | 1 | 98 | 1 | 99 | 1.29e-11 | 68.2 |
| MS.gene052098.t1 | MTR_5g080010 | 39.493 | 276 | 146 | 5 | 252 | 524 | 157 | 414 | 7.29e-37 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052098.t1 | AT1G07540 | 53.103 | 435 | 157 | 13 | 283 | 713 | 225 | 616 | 6.40e-121 | 376 |
| MS.gene052098.t1 | AT1G07540 | 56.140 | 57 | 24 | 1 | 1 | 57 | 1 | 56 | 6.91e-11 | 66.2 |
| MS.gene052098.t1 | AT3G12560 | 44.969 | 487 | 213 | 9 | 230 | 713 | 163 | 597 | 1.11e-114 | 359 |
| MS.gene052098.t1 | AT3G12560 | 44.969 | 487 | 213 | 9 | 230 | 713 | 163 | 597 | 1.11e-114 | 359 |
| MS.gene052098.t1 | AT3G46590 | 46.624 | 474 | 174 | 17 | 243 | 708 | 93 | 495 | 1.47e-107 | 337 |
| MS.gene052098.t1 | AT3G46590 | 46.624 | 474 | 174 | 17 | 243 | 708 | 133 | 535 | 4.82e-107 | 337 |
| MS.gene052098.t1 | AT3G46590 | 46.624 | 474 | 174 | 17 | 243 | 708 | 134 | 536 | 5.23e-107 | 337 |
| MS.gene052098.t1 | AT3G46590 | 46.414 | 474 | 169 | 17 | 243 | 708 | 134 | 530 | 1.03e-105 | 333 |
| MS.gene052098.t1 | AT5G13820 | 42.857 | 490 | 245 | 12 | 240 | 726 | 177 | 634 | 2.00e-103 | 330 |
| MS.gene052098.t1 | AT5G13820 | 42.857 | 490 | 245 | 12 | 240 | 726 | 177 | 634 | 2.00e-103 | 330 |
| MS.gene052098.t1 | AT5G59430 | 45.062 | 486 | 169 | 17 | 241 | 709 | 148 | 552 | 1.11e-99 | 318 |
| MS.gene052098.t1 | AT5G59430 | 44.720 | 483 | 169 | 17 | 241 | 706 | 148 | 549 | 4.50e-97 | 312 |
| MS.gene052098.t1 | AT5G59430 | 44.720 | 483 | 169 | 17 | 241 | 706 | 148 | 549 | 4.50e-97 | 312 |
| MS.gene052098.t1 | AT5G59430 | 44.720 | 483 | 169 | 17 | 241 | 706 | 148 | 549 | 4.50e-97 | 312 |
| MS.gene052098.t1 | AT5G59430 | 44.720 | 483 | 169 | 17 | 241 | 706 | 147 | 548 | 4.72e-97 | 311 |
| MS.gene052098.t1 | AT3G46590 | 43.911 | 271 | 110 | 11 | 243 | 509 | 134 | 366 | 5.42e-46 | 169 |
| MS.gene052098.t1 | AT3G53790 | 72.477 | 109 | 27 | 1 | 601 | 706 | 288 | 396 | 6.50e-45 | 166 |
| MS.gene052098.t1 | AT3G53790 | 53.409 | 88 | 37 | 1 | 429 | 512 | 173 | 260 | 2.82e-21 | 97.4 |
Find 143 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATTCATTTGAGATATT+TGG | 0.208514 | 2.3:+5620869 | None:intergenic |
| TAAAGTAGAAGGCAAGTTTC+AGG | 0.226508 | 2.3:+5618463 | None:intergenic |
| ATTACTAGTAAAGTTGAATT+AGG | 0.235538 | 2.3:-5621470 | MS.gene052098:CDS |
| GCCTGTTCCTCAAGAACTTT+TGG | 0.237700 | 2.3:-5618557 | MS.gene052098:CDS |
| TCTCAGTTCGCTTTGGCTTC+TGG | 0.241253 | 2.3:+5619518 | None:intergenic |
| GAAGCAACAGTTGCAGTTTC+AGG | 0.244154 | 2.3:+5620405 | None:intergenic |
| AGGAATAGTTACAAGTTCTT+TGG | 0.254884 | 2.3:+5619579 | None:intergenic |
| TCCACTTCGGCAACAGAAAA+AGG | 0.257262 | 2.3:+5619469 | None:intergenic |
| AGTCCCTCCGTATCCATTTC+AGG | 0.264251 | 2.3:+5619559 | None:intergenic |
| AATGTGTGCGATTGACTTAT+TGG | 0.277403 | 2.3:-5621921 | MS.gene052098:CDS |
| ATTTGATAATGCAGGATAAA+TGG | 0.287402 | 2.3:-5618630 | MS.gene052098:intron |
| CATCCGACTCCGATGATTCA+TGG | 0.289920 | 2.3:-5619712 | MS.gene052098:CDS |
| GGTAAGCTTTGCGAAGAATT+AGG | 0.294244 | 2.3:+5620140 | None:intergenic |
| TTATGGATTTGTTGGCTATC+AGG | 0.301924 | 2.3:-5622122 | MS.gene052098:CDS |
| TGATAACCAGCTGGATGCTT+TGG | 0.304017 | 2.3:-5620177 | MS.gene052098:CDS |
| GCTTCCAAGGATGACTTTCC+AGG | 0.307385 | 2.3:+5620610 | None:intergenic |
| AGGATAGATTATGGATTTGT+TGG | 0.319703 | 2.3:-5622130 | MS.gene052098:CDS |
| TGAATGGTTTGTTTGCATCT+AGG | 0.330283 | 2.3:+5621798 | None:intergenic |
| CCTCAAGCGCCGATAGGTTT+AGG | 0.337400 | 2.3:-5621305 | MS.gene052098:CDS |
| CTGTCACAACTAGCTTCATT+AGG | 0.344968 | 2.3:+5621764 | None:intergenic |
| GTATAGGTGATCAAAGAATA+AGG | 0.363994 | 2.3:-5621124 | MS.gene052098:CDS |
| AATTCGCATCTTGAAATTGA+TGG | 0.376266 | 2.3:-5621593 | MS.gene052098:CDS |
| CCTTGATTCGTGTCATTGTT+GGG | 0.381125 | 2.3:+5620763 | None:intergenic |
| TCCAAAAGTTCTTGAGGAAC+AGG | 0.384204 | 2.3:+5618556 | None:intergenic |
| GATAACCAGCTGGATGCTTT+GGG | 0.385054 | 2.3:-5620176 | MS.gene052098:CDS |
| GGTGGCAATGCCAAGTTGTC+GGG | 0.385312 | 2.3:-5621284 | MS.gene052098:CDS |
| ACTTGTAACTATTCCTGAAA+TGG | 0.387283 | 2.3:-5619572 | MS.gene052098:CDS |
| CGCTTTGGCTTCTGGTTCAC+TGG | 0.388587 | 2.3:+5619526 | None:intergenic |
| CCTTCTTCTATCAATACATT+AGG | 0.390584 | 2.3:-5619622 | MS.gene052098:CDS |
| CATCTCTAAGTTTCTTTCCA+TGG | 0.391295 | 2.3:+5620234 | None:intergenic |
| GCGCAGAAGAGGATAGATTA+TGG | 0.397692 | 2.3:-5622139 | MS.gene052098:CDS |
| GTTGCTTTGTTTGTTGCTGT+TGG | 0.399464 | 2.3:+5618503 | None:intergenic |
| TGCAACTGTTGCTTCCTTGA+AGG | 0.401829 | 2.3:-5620397 | MS.gene052098:intron |
| AGTAAAACTCTACTTCAAAC+TGG | 0.401926 | 2.3:-5620209 | MS.gene052098:CDS |
| TCCTCACTGCTCATGCATAT+TGG | 0.404954 | 2.3:-5618528 | MS.gene052098:CDS |
| AACTCCACTTCAAATTCTAA+TGG | 0.407925 | 2.3:-5620817 | MS.gene052098:CDS |
| AAAGATTGGCTTCTAAATAT+CGG | 0.408174 | 2.3:-5621100 | MS.gene052098:CDS |
| TATACAATTCTTTGATCTAA+AGG | 0.408351 | 2.3:+5621142 | None:intergenic |
| CGTGTGGCACGCGGCTTTGT+TGG | 0.410650 | 2.3:+5622097 | None:intergenic |
| TTCAACGACTTATTTGCATC+CGG | 0.411417 | 2.3:+5621707 | None:intergenic |
| TTGCTTTGTTTGTTGCTGTT+GGG | 0.413177 | 2.3:+5618504 | None:intergenic |
| TTTAGATCAAAGAATTGTAT+AGG | 0.421024 | 2.3:-5621140 | MS.gene052098:CDS |
| TGTGAGATCTCAGTTCGCTT+TGG | 0.423608 | 2.3:+5619511 | None:intergenic |
| TGGTCCACAGAAAGCAGTTA+TGG | 0.424624 | 2.3:-5620306 | MS.gene052098:intron |
| GGATGCTTTGGGCTTCACCT+TGG | 0.427101 | 2.3:-5620165 | MS.gene052098:CDS |
| GATCCGTCACCAGGTGTGAT+TGG | 0.433742 | 2.3:+5621857 | None:intergenic |
| GCTTCAACACAGATTTGTTA+AGG | 0.440987 | 2.3:-5621738 | MS.gene052098:CDS |
| ACCTTGATTCGTGTCATTGT+TGG | 0.442882 | 2.3:+5620762 | None:intergenic |
| CAATAAAGTGCCGGCGGCTA+CGG | 0.444859 | 2.3:+5621895 | None:intergenic |
| GAGGTTGGTTGCTGACGTTT+TGG | 0.452923 | 2.3:-5621525 | MS.gene052098:CDS |
| AGGTGGCAATGCCAAGTTGT+CGG | 0.455271 | 2.3:-5621285 | MS.gene052098:CDS |
| TTCAACAATGTTGCCTAACC+TGG | 0.458291 | 2.3:+5619663 | None:intergenic |
| AAAGTAGAAGGCAAGTTTCA+GGG | 0.459532 | 2.3:+5618464 | None:intergenic |
| AAAGTTGAATTAGGATCCTC+TGG | 0.471052 | 2.3:-5621461 | MS.gene052098:CDS |
| GTGTTTCTTGTTCATCATCT+CGG | 0.472466 | 2.3:-5620741 | MS.gene052098:CDS |
| TTAGGAAGCTCGGCTTTGAA+TGG | 0.472558 | 2.3:+5621782 | None:intergenic |
| GAGCATCAAGTAACCAGGTT+AGG | 0.478022 | 2.3:-5619676 | MS.gene052098:CDS |
| AAGTTGCAATCACTACAATC+TGG | 0.484938 | 2.3:+5621434 | None:intergenic |
| GTACCAATCGGTACTGCGAC+TGG | 0.489310 | 2.3:-5621362 | MS.gene052098:CDS |
| TTCTATTTGCTCAGAGAGGT+TGG | 0.489879 | 2.3:-5621540 | MS.gene052098:CDS |
| TCAAAGAATAAGGAAAAGAT+TGG | 0.490559 | 2.3:-5621114 | MS.gene052098:CDS |
| GCCGTCGAGAGACTTGGAAC+TGG | 0.495954 | 2.3:-5619433 | MS.gene052098:CDS |
| GGCTCACCTCTTCTTTGTTG+AGG | 0.499211 | 2.3:+5618577 | None:intergenic |
| ATGCTGTGTTGAGGAACTAA+TGG | 0.499819 | 2.3:-5621336 | MS.gene052098:CDS |
| CATTACCCTGGTAAAGATAG+AGG | 0.502682 | 2.3:+5620068 | None:intergenic |
| CAACACAGATTTGTTAAGGA+AGG | 0.505360 | 2.3:-5621734 | MS.gene052098:CDS |
| GTTGAAGCCGTCGAGAGACT+TGG | 0.507763 | 2.3:-5619439 | MS.gene052098:CDS |
| GATCAAATCATTTAAAGTGC+CGG | 0.507969 | 2.3:-5620445 | MS.gene052098:CDS |
| CCTTTGAACAACGAGCTACT+AGG | 0.508550 | 2.3:+5621245 | None:intergenic |
| CCTAGTAGCTCGTTGTTCAA+AGG | 0.513868 | 2.3:-5621245 | MS.gene052098:CDS |
| CACAACGCCGCCGAATTCGC+AGG | 0.516918 | 2.3:-5619492 | MS.gene052098:CDS |
| CCTAATGTATTGATAGAAGA+AGG | 0.520168 | 2.3:+5619622 | None:intergenic |
| ATCGTTATACCCCGACAACT+TGG | 0.520649 | 2.3:+5621274 | None:intergenic |
| CCCAACAATGACACGAATCA+AGG | 0.522512 | 2.3:-5620763 | MS.gene052098:CDS |
| TCAACGACTTATTTGCATCC+GGG | 0.528602 | 2.3:+5621708 | None:intergenic |
| TAAAGTGCCGGCGGCTACGG+TGG | 0.530670 | 2.3:+5621898 | None:intergenic |
| TTTCTCTTGCAATAAAGTGC+CGG | 0.532184 | 2.3:+5621886 | None:intergenic |
| CGAGTTGGTATGATTCTCCA+TGG | 0.533773 | 2.3:-5620251 | MS.gene052098:CDS |
| TAGGACGTATGTGGATTTGA+AGG | 0.534877 | 2.3:-5619121 | MS.gene052098:intron |
| ATTTGTTAAGGAAGGTTGCC+CGG | 0.534918 | 2.3:-5621726 | MS.gene052098:CDS |
| AACTATTCCTGAAATGGATA+CGG | 0.538330 | 2.3:-5619566 | MS.gene052098:CDS |
| AAATCTGAAAAGGTACCAAT+CGG | 0.539431 | 2.3:-5621374 | MS.gene052098:CDS |
| TGTTGATGTAAGTAAAGTAA+AGG | 0.539535 | 2.3:-5621408 | MS.gene052098:CDS |
| CCTAAACCTATCGGCGCTTG+AGG | 0.543731 | 2.3:+5621305 | None:intergenic |
| CTGATGACGTAAGTAGTGAC+AGG | 0.544616 | 2.3:-5621673 | MS.gene052098:CDS |
| GCAGTGACTACTCTACTTCA+AGG | 0.546517 | 2.3:-5620281 | MS.gene052098:CDS |
| ACTAGCTTCATTAGGAAGCT+CGG | 0.549702 | 2.3:+5621772 | None:intergenic |
| AACATGCCTCTATCTTTACC+AGG | 0.555620 | 2.3:-5620074 | MS.gene052098:CDS |
| TGTTGCCGAAGTGGAAGCAC+TGG | 0.564610 | 2.3:-5619461 | MS.gene052098:CDS |
| AATTTCTCATGATAACCAGC+TGG | 0.565236 | 2.3:-5620186 | MS.gene052098:CDS |
| ATTTCCATTAGAATTTGAAG+TGG | 0.566306 | 2.3:+5620813 | None:intergenic |
| TCAACATGGATTCGTTAAAG+AGG | 0.566359 | 2.3:-5621822 | MS.gene052098:CDS |
| CTTCAAGGTGGATTGCGAGT+TGG | 0.570784 | 2.3:-5620266 | MS.gene052098:CDS |
| TCTAATGGAAATATCAGAAG+TGG | 0.571057 | 2.3:-5620802 | MS.gene052098:CDS |
| TCCAGTTCCAAGTCTCTCGA+CGG | 0.573306 | 2.3:+5619432 | None:intergenic |
| GAGATATGGTGGCGCAGAAG+AGG | 0.575112 | 2.3:-5622150 | None:intergenic |
| CACGATACACTTTCTAACAA+TGG | 0.577025 | 2.3:-5621056 | MS.gene052098:intron |
| AGATCCTGGAAAGTCATCCT+TGG | 0.577146 | 2.3:-5620614 | MS.gene052098:CDS |
| TCAGAGAAACCATGAATCAT+CGG | 0.585857 | 2.3:+5619703 | None:intergenic |
| TGAAGCCCAAAGCATCCAGC+TGG | 0.587306 | 2.3:+5620171 | None:intergenic |
| CAACATGGATTCGTTAAAGA+GGG | 0.588442 | 2.3:-5621821 | MS.gene052098:CDS |
| ATATCTCCTCAACAAAGAAG+AGG | 0.590679 | 2.3:-5618583 | MS.gene052098:CDS |
| GCAGGATAAATGGAAAACAT+TGG | 0.595370 | 2.3:-5618620 | MS.gene052098:intron |
| ACCCTATCCAAAAGTTCTTG+AGG | 0.596914 | 2.3:+5618550 | None:intergenic |
| GCGTGCCACACGATCACCTA+GGG | 0.598126 | 2.3:-5622086 | MS.gene052098:intron |
| TTACGATCTAAAGATTCTCA+TGG | 0.598425 | 2.3:-5620571 | MS.gene052098:intron |
| TCATCATCTCGGATGCGCAA+AGG | 0.599031 | 2.3:-5620730 | MS.gene052098:intron |
| ACTTACGTCATCAGAAAGCT+CGG | 0.600372 | 2.3:+5621682 | None:intergenic |
| CTAGGTGATCGTGTGGCACG+CGG | 0.600422 | 2.3:+5622088 | None:intergenic |
| CGGTCAAAATCACTATTCGA+AGG | 0.601638 | 2.3:-5621618 | MS.gene052098:CDS |
| GACTGGAGCATGCTGTGTTG+AGG | 0.602494 | 2.3:-5621345 | MS.gene052098:CDS |
| TTGCGAAGAATTAGGCTCCA+AGG | 0.603627 | 2.3:+5620148 | None:intergenic |
| TGCAAAGCATAGGACGTATG+TGG | 0.605409 | 2.3:-5619130 | MS.gene052098:CDS |
| AAACCATGAATCATCGGAGT+CGG | 0.608691 | 2.3:+5619709 | None:intergenic |
| GCTCCAGTCGCAGTACCGAT+TGG | 0.608866 | 2.3:+5621359 | None:intergenic |
| CTCTTGCAATAAAGTGCCGG+CGG | 0.613646 | 2.3:+5621889 | None:intergenic |
| TTCAACCAGTGCTTCCACTT+CGG | 0.614342 | 2.3:+5619456 | None:intergenic |
| GGAGTCGGATGAAGTACAGA+TGG | 0.615676 | 2.3:+5619724 | None:intergenic |
| ATGGAAAACATTGGTACACA+CGG | 0.617941 | 2.3:-5618611 | MS.gene052098:CDS |
| ATGAAGCTAGTTGTGACAGA+AGG | 0.618118 | 2.3:-5621760 | MS.gene052098:CDS |
| AGAGGCATGTTGTCTGCAGT+AGG | 0.619918 | 2.3:+5620086 | None:intergenic |
| AATCCAATCACACCTGGTGA+CGG | 0.619982 | 2.3:-5621860 | MS.gene052098:CDS |
| TATTCCTGAAATGGATACGG+AGG | 0.621261 | 2.3:-5619563 | MS.gene052098:CDS |
| ACGCTGAGCATCAAGTAACC+AGG | 0.623472 | 2.3:-5619681 | MS.gene052098:CDS |
| CAAGTTCTATTTGCTCAGAG+AGG | 0.625767 | 2.3:-5621544 | MS.gene052098:CDS |
| TCGAGAGACTTGGAACTGGA+AGG | 0.630557 | 2.3:-5619429 | MS.gene052098:intron |
| TTATTGGCCACCGTAGCCGC+CGG | 0.631400 | 2.3:-5621905 | MS.gene052098:CDS |
| AATTGATGGTCACTCATGCA+TGG | 0.632522 | 2.3:-5621579 | MS.gene052098:CDS |
| AGAATGACGATATGCTTCCA+AGG | 0.635283 | 2.3:+5620597 | None:intergenic |
| GAATCTTTAGCACATGTGAG+TGG | 0.636250 | 2.3:+5620119 | None:intergenic |
| GGATACATTTCAAAGAAGTG+TGG | 0.637536 | 2.3:-5621954 | MS.gene052098:CDS |
| GTGGCAATGCCAAGTTGTCG+GGG | 0.645617 | 2.3:-5621283 | MS.gene052098:CDS |
| CGCGTGCCACACGATCACCT+AGG | 0.652320 | 2.3:-5622087 | MS.gene052098:CDS |
| ATTTACCCTAGGTGATCGTG+TGG | 0.652914 | 2.3:+5622081 | None:intergenic |
| GCATTGCCACCTAAACCTAT+CGG | 0.658411 | 2.3:+5621296 | None:intergenic |
| TCCACAGAAAGCAGTTATGG+AGG | 0.659363 | 2.3:-5620303 | MS.gene052098:intron |
| CAAGCGCCGATAGGTTTAGG+TGG | 0.659517 | 2.3:-5621302 | MS.gene052098:CDS |
| ATTCCTGAAATGGATACGGA+GGG | 0.670098 | 2.3:-5619562 | MS.gene052098:CDS |
| AAACAGAATCCAATCACACC+TGG | 0.670956 | 2.3:-5621866 | MS.gene052098:CDS |
| ACCAATATGCATGAGCAGTG+AGG | 0.673172 | 2.3:+5618527 | None:intergenic |
| ACTACAATCTGGATATCCAG+AGG | 0.693416 | 2.3:+5621445 | None:intergenic |
| GTGACTACTCTACTTCAAGG+TGG | 0.715265 | 2.3:-5620278 | MS.gene052098:CDS |
| ACATGCCTCTATCTTTACCA+GGG | 0.722753 | 2.3:-5620073 | MS.gene052098:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATCTATACAAA+AGG | + | chr2.3:5621528-5621547 | None:intergenic | 10.0% |
| !! | AAAAAAAAATCTATACAAAA+GGG | + | chr2.3:5621527-5621546 | None:intergenic | 10.0% |
| !! | AATAAATAGATAATAGTAAT+CGG | + | chr2.3:5618574-5618593 | None:intergenic | 10.0% |
| !!! | GAATTTATTTAAAACTTATT+TGG | - | chr2.3:5621242-5621261 | MS.gene052098:CDS | 10.0% |
| !!! | GTATAGATTTTTTTTTTTAT+TGG | - | chr2.3:5621531-5621550 | MS.gene052098:CDS | 10.0% |
| !!! | TAGAATTTTTCAATTGTATA+TGG | + | chr2.3:5620256-5620275 | None:intergenic | 15.0% |
| !! | AAATCAAGAGAATAATATTC+AGG | - | chr2.3:5620848-5620867 | MS.gene052098:CDS | 20.0% |
| !! | ACTAACATTTGCATAATATT+TGG | - | chr2.3:5621277-5621296 | MS.gene052098:CDS | 20.0% |
| !! | ATTACTAGTAAAGTTGAATT+AGG | - | chr2.3:5619137-5619156 | MS.gene052098:CDS | 20.0% |
| !! | CATTAAAAAAAGTAGTTACA+TGG | + | chr2.3:5618617-5618636 | None:intergenic | 20.0% |
| !! | CTTATAATAGAAAAAATGGT+TGG | - | chr2.3:5621936-5621955 | MS.gene052098:CDS | 20.0% |
| !! | TATACAATTCTTTGATCTAA+AGG | + | chr2.3:5619468-5619487 | None:intergenic | 20.0% |
| !! | TGTCCTTATAATAGAAAAAA+TGG | - | chr2.3:5621932-5621951 | MS.gene052098:CDS | 20.0% |
| !! | TTTAGATCAAAGAATTGTAT+AGG | - | chr2.3:5619467-5619486 | MS.gene052098:CDS | 20.0% |
| !!! | AATCAACAAAAAAGCATAAA+TGG | + | chr2.3:5621726-5621745 | None:intergenic | 20.0% |
| !!! | AATGTGTCATTAAAAAAATC+AGG | - | chr2.3:5621422-5621441 | MS.gene052098:CDS | 20.0% |
| !!! | ATAATTTTATTGTACCTTCA+AGG | + | chr2.3:5620227-5620246 | None:intergenic | 20.0% |
| !!! | CAACCATTTTTTCTATTATA+AGG | + | chr2.3:5621938-5621957 | None:intergenic | 20.0% |
| !!! | GAATATTCATTTGAGATATT+TGG | + | chr2.3:5619741-5619760 | None:intergenic | 20.0% |
| !!! | TAATATTTTTCATTTCACTG+TGG | + | chr2.3:5619121-5619140 | None:intergenic | 20.0% |
| !!! | TGATTTTTTTAATGACACAT+TGG | + | chr2.3:5621423-5621442 | None:intergenic | 20.0% |
| ! | AACTAGCTAGATAGAATATT+AGG | + | chr2.3:5621750-5621769 | None:intergenic | 25.0% |
| ! | AATACAGTATAAGATACTGA+TGG | - | chr2.3:5621850-5621869 | MS.gene052098:CDS | 25.0% |
| ! | ATTTCCATTAGAATTTGAAG+TGG | + | chr2.3:5619797-5619816 | None:intergenic | 25.0% |
| ! | TAATGAAATGTTCCTATTCA+AGG | - | chr2.3:5619913-5619932 | MS.gene052098:intron | 25.0% |
| ! | TAGTATTGCATTGTATCATT+TGG | - | chr2.3:5621906-5621925 | MS.gene052098:CDS | 25.0% |
| ! | TCAAAGAATAAGGAAAAGAT+TGG | - | chr2.3:5619493-5619512 | MS.gene052098:CDS | 25.0% |
| ! | TGAATATTCCTTTCAAAAAG+AGG | - | chr2.3:5619752-5619771 | MS.gene052098:intron | 25.0% |
| ! | TGTTGATGTAAGTAAAGTAA+AGG | - | chr2.3:5619199-5619218 | MS.gene052098:intron | 25.0% |
| ! | TTAGGTGAAAAAAGATTGAT+AGG | - | chr2.3:5621003-5621022 | MS.gene052098:intron | 25.0% |
| !! | AAAATCTTCCTCTTTTTGAA+AGG | + | chr2.3:5619763-5619782 | None:intergenic | 25.0% |
| !! | TAATGATTTTTCGTAGAAGA+GGG | - | chr2.3:5618632-5618651 | MS.gene052098:intron | 25.0% |
| !! | TATTTGAAACATGTTAGTTG+TGG | - | chr2.3:5619666-5619685 | MS.gene052098:CDS | 25.0% |
| !! | TTAATGATTTTTCGTAGAAG+AGG | - | chr2.3:5618631-5618650 | MS.gene052098:intron | 25.0% |
| !!! | AAAGATTGGCTTCTAAATAT+CGG | - | chr2.3:5619507-5619526 | MS.gene052098:CDS | 25.0% |
| !!! | ATATTCTAGTTCAAGTAGTT+GGG | + | chr2.3:5620594-5620613 | None:intergenic | 25.0% |
| !!! | ATTTGATAATGCAGGATAAA+TGG | - | chr2.3:5621977-5621996 | MS.gene052098:intron | 25.0% |
| !!! | CAGCATATTCTTTTTTTAGT+AGG | + | chr2.3:5620709-5620728 | None:intergenic | 25.0% |
| !!! | TATTAGGTATTTGATAATGC+AGG | - | chr2.3:5621969-5621988 | MS.gene052098:intron | 25.0% |
| AACTATTCCTGAAATGGATA+CGG | - | chr2.3:5621041-5621060 | MS.gene052098:intron | 30.0% | |
| AACTCCACTTCAAATTCTAA+TGG | - | chr2.3:5619790-5619809 | MS.gene052098:intron | 30.0% | |
| AATGCAATCAATTGCAAGTT+AGG | + | chr2.3:5620565-5620584 | None:intergenic | 30.0% | |
| AATTCGCATCTTGAAATTGA+TGG | - | chr2.3:5619014-5619033 | MS.gene052098:intron | 30.0% | |
| ACTTGTAACTATTCCTGAAA+TGG | - | chr2.3:5621035-5621054 | MS.gene052098:intron | 30.0% | |
| AGGAATAGTTACAAGTTCTT+TGG | + | chr2.3:5621031-5621050 | None:intergenic | 30.0% | |
| AGGATAGATTATGGATTTGT+TGG | - | chr2.3:5618477-5618496 | MS.gene052098:CDS | 30.0% | |
| AGTAAAACTCTACTTCAAAC+TGG | - | chr2.3:5620398-5620417 | MS.gene052098:CDS | 30.0% | |
| CAAGTAATTGGTTGTGTATT+AGG | - | chr2.3:5621684-5621703 | MS.gene052098:CDS | 30.0% | |
| CCTTCTTCTATCAATACATT+AGG | - | chr2.3:5620985-5621004 | MS.gene052098:intron | 30.0% | |
| CTTGATTGATATCTTCAAAG+AGG | - | chr2.3:5620097-5620116 | MS.gene052098:CDS | 30.0% | |
| GTATAGGTGATCAAAGAATA+AGG | - | chr2.3:5619483-5619502 | MS.gene052098:CDS | 30.0% | |
| GTTCTATCAAGTCAAGTAAT+TGG | - | chr2.3:5621672-5621691 | MS.gene052098:CDS | 30.0% | |
| TCATCGAAAAAAGATCAACA+TGG | - | chr2.3:5618771-5618790 | MS.gene052098:intron | 30.0% | |
| TCTAATGGAAATATCAGAAG+TGG | - | chr2.3:5619805-5619824 | MS.gene052098:intron | 30.0% | |
| TGAGCTACAAAAATCTGAAA+AGG | - | chr2.3:5619223-5619242 | MS.gene052098:intron | 30.0% | |
| TTACGATCTAAAGATTCTCA+TGG | - | chr2.3:5620036-5620055 | MS.gene052098:intron | 30.0% | |
| TTTAATGACAACATCTCCAA+GGG | + | chr2.3:5620761-5620780 | None:intergenic | 30.0% | |
| ! | CCTAATGTATTGATAGAAGA+AGG | + | chr2.3:5620988-5621007 | None:intergenic | 30.0% |
| ! | GATCAAATCATTTAAAGTGC+CGG | - | chr2.3:5620162-5620181 | MS.gene052098:CDS | 30.0% |
| ! | GTGTCATTAAAAAAATCAGG+TGG | - | chr2.3:5621425-5621444 | MS.gene052098:CDS | 30.0% |
| ! | TGTCACACTTTAAGTCATTT+TGG | - | chr2.3:5621595-5621614 | MS.gene052098:CDS | 30.0% |
| ! | TTTTAATGACAACATCTCCA+AGG | + | chr2.3:5620762-5620781 | None:intergenic | 30.0% |
| !! | AAATCTGAAAAGGTACCAAT+CGG | - | chr2.3:5619233-5619252 | MS.gene052098:intron | 30.0% |
| !! | ATGATGACGAAAACTTTTCA+GGG | - | chr2.3:5619414-5619433 | MS.gene052098:intron | 30.0% |
| !! | CATATTCTAGTTCAAGTAGT+TGG | + | chr2.3:5620595-5620614 | None:intergenic | 30.0% |
| !!! | AAGGACTTTGTTTTCAAACT+AGG | + | chr2.3:5619449-5619468 | None:intergenic | 30.0% |
| !!! | AGGACTTTGTTTTCAAACTA+GGG | + | chr2.3:5619448-5619467 | None:intergenic | 30.0% |
| !!! | TGTTTTAATCAGTGAAGCTT+AGG | - | chr2.3:5620140-5620159 | MS.gene052098:CDS | 30.0% |
| AAAGTAGAAGGCAAGTTTCA+GGG | + | chr2.3:5622146-5622165 | None:intergenic | 35.0% | |
| AAAGTTGAATTAGGATCCTC+TGG | - | chr2.3:5619146-5619165 | MS.gene052098:CDS | 35.0% | |
| AAGCAGAATTCATTTACCCT+AGG | + | chr2.3:5618540-5618559 | None:intergenic | 35.0% | |
| AAGTGACAAAACAAGAAAGC+AGG | + | chr2.3:5619608-5619627 | None:intergenic | 35.0% | |
| AAGTTGCAATCACTACAATC+TGG | + | chr2.3:5619176-5619195 | None:intergenic | 35.0% | |
| AATGAATTCTGCTTCGCTTA+TGG | - | chr2.3:5618546-5618565 | MS.gene052098:CDS | 35.0% | |
| AATTTCTCATGATAACCAGC+TGG | - | chr2.3:5620421-5620440 | MS.gene052098:CDS | 35.0% | |
| ATATCTCCTCAACAAAGAAG+AGG | - | chr2.3:5622024-5622043 | MS.gene052098:intron | 35.0% | |
| ATGGAAAACATTGGTACACA+CGG | - | chr2.3:5621996-5622015 | MS.gene052098:intron | 35.0% | |
| CAACATGGATTCGTTAAAGA+GGG | - | chr2.3:5618786-5618805 | MS.gene052098:intron | 35.0% | |
| CACGATACACTTTCTAACAA+TGG | - | chr2.3:5619551-5619570 | MS.gene052098:CDS | 35.0% | |
| CATCTCTAAGTTTCTTTCCA+TGG | + | chr2.3:5620376-5620395 | None:intergenic | 35.0% | |
| GCAGGATAAATGGAAAACAT+TGG | - | chr2.3:5621987-5622006 | MS.gene052098:intron | 35.0% | |
| GGAATCTCAATAAAAAGCTC+CGG | + | chr2.3:5620184-5620203 | None:intergenic | 35.0% | |
| GGATACATTTCAAAGAAGTG+TGG | - | chr2.3:5618653-5618672 | MS.gene052098:intron | 35.0% | |
| GGTTGGCATGTGATAATATT+AGG | - | chr2.3:5621953-5621972 | MS.gene052098:CDS | 35.0% | |
| GTGTTTCTTGTTCATCATCT+CGG | - | chr2.3:5619866-5619885 | MS.gene052098:intron | 35.0% | |
| TAAAGTAGAAGGCAAGTTTC+AGG | + | chr2.3:5622147-5622166 | None:intergenic | 35.0% | |
| TCAACATGGATTCGTTAAAG+AGG | - | chr2.3:5618785-5618804 | MS.gene052098:intron | 35.0% | |
| TCAGAGAAACCATGAATCAT+CGG | + | chr2.3:5620907-5620926 | None:intergenic | 35.0% | |
| TTAAGTACAGTGCCTTGAAT+AGG | + | chr2.3:5619928-5619947 | None:intergenic | 35.0% | |
| TTCAACGACTTATTTGCATC+CGG | + | chr2.3:5618903-5618922 | None:intergenic | 35.0% | |
| TTTCTCTTGCAATAAAGTGC+CGG | + | chr2.3:5618724-5618743 | None:intergenic | 35.0% | |
| ! | AATGTGTGCGATTGACTTAT+TGG | - | chr2.3:5618686-5618705 | MS.gene052098:intron | 35.0% |
| ! | CTGCAGCTCTTACAAAATTT+TGG | - | chr2.3:5620281-5620300 | MS.gene052098:CDS | 35.0% |
| ! | TCCTCAAGAACTTTTGGATA+GGG | - | chr2.3:5622056-5622075 | MS.gene052098:intron | 35.0% |
| ! | TTCCTCAAGAACTTTTGGAT+AGG | - | chr2.3:5622055-5622074 | MS.gene052098:intron | 35.0% |
| !! | CAACACAGATTTGTTAAGGA+AGG | - | chr2.3:5618873-5618892 | MS.gene052098:intron | 35.0% |
| !! | CACACTTTAAGTCATTTTGG+TGG | - | chr2.3:5621598-5621617 | MS.gene052098:CDS | 35.0% |
| !! | GATGATGACGAAAACTTTTC+AGG | - | chr2.3:5619413-5619432 | MS.gene052098:intron | 35.0% |
| !! | GCTTCAACACAGATTTGTTA+AGG | - | chr2.3:5618869-5618888 | MS.gene052098:intron | 35.0% |
| !! | TGAATGGTTTGTTTGCATCT+AGG | + | chr2.3:5618812-5618831 | None:intergenic | 35.0% |
| !! | TTATGGATTTGTTGGCTATC+AGG | - | chr2.3:5618485-5618504 | MS.gene052098:CDS | 35.0% |
| !! | TTGCTTTGTTTGTTGCTGTT+GGG | + | chr2.3:5622106-5622125 | None:intergenic | 35.0% |
| !!! | CTTTTGATGATGCAAAGCAT+AGG | - | chr2.3:5621467-5621486 | MS.gene052098:CDS | 35.0% |
| AAACAGAATCCAATCACACC+TGG | - | chr2.3:5618741-5618760 | MS.gene052098:intron | 40.0% | |
| AAACCATGAATCATCGGAGT+CGG | + | chr2.3:5620901-5620920 | None:intergenic | 40.0% | |
| AACATGCCTCTATCTTTACC+AGG | - | chr2.3:5620533-5620552 | MS.gene052098:intron | 40.0% | |
| AATTAGTAGAGCCATGCACA+CGG | + | chr2.3:5621398-5621417 | None:intergenic | 40.0% | |
| ACATGCCTCTATCTTTACCA+GGG | - | chr2.3:5620534-5620553 | MS.gene052098:intron | 40.0% | |
| ACCCTATCCAAAAGTTCTTG+AGG | + | chr2.3:5622060-5622079 | None:intergenic | 40.0% | |
| ACTACAATCTGGATATCCAG+AGG | + | chr2.3:5619165-5619184 | None:intergenic | 40.0% | |
| ACTTACGTCATCAGAAAGCT+CGG | + | chr2.3:5618928-5618947 | None:intergenic | 40.0% | |
| AGAATGACGATATGCTTCCA+AGG | + | chr2.3:5620013-5620032 | None:intergenic | 40.0% | |
| ATATGCTGTGTCAGTACCAT+CGG | - | chr2.3:5620610-5620629 | MS.gene052098:CDS | 40.0% | |
| ATGAAGCTAGTTGTGACAGA+AGG | - | chr2.3:5618847-5618866 | MS.gene052098:intron | 40.0% | |
| ATGCTGTGTTGAGGAACTAA+TGG | - | chr2.3:5619271-5619290 | MS.gene052098:intron | 40.0% | |
| ATTCCTGAAATGGATACGGA+GGG | - | chr2.3:5621045-5621064 | MS.gene052098:intron | 40.0% | |
| CAAATCTTTGTTGCAGATCC+TGG | - | chr2.3:5619979-5619998 | MS.gene052098:intron | 40.0% | |
| CAAGTTCTATTTGCTCAGAG+AGG | - | chr2.3:5619063-5619082 | MS.gene052098:intron | 40.0% | |
| CAGGATCTGCAACAAAGATT+TGG | + | chr2.3:5619981-5620000 | None:intergenic | 40.0% | |
| CATTACCCTGGTAAAGATAG+AGG | + | chr2.3:5620542-5620561 | None:intergenic | 40.0% | |
| CGGTCAAAATCACTATTCGA+AGG | - | chr2.3:5618989-5619008 | MS.gene052098:intron | 40.0% | |
| GAATCTTTAGCACATGTGAG+TGG | + | chr2.3:5620491-5620510 | None:intergenic | 40.0% | |
| GGTAAGCTTTGCGAAGAATT+AGG | + | chr2.3:5620470-5620489 | None:intergenic | 40.0% | |
| GTGGATATCTCAATTTCCCT+TGG | - | chr2.3:5620742-5620761 | MS.gene052098:CDS | 40.0% | |
| TAGGACGTATGTGGATTTGA+AGG | - | chr2.3:5621486-5621505 | MS.gene052098:CDS | 40.0% | |
| TATTCCTGAAATGGATACGG+AGG | - | chr2.3:5621044-5621063 | MS.gene052098:intron | 40.0% | |
| TCAACGACTTATTTGCATCC+GGG | + | chr2.3:5618902-5618921 | None:intergenic | 40.0% | |
| TCATGGTATGCGAAGATTGA+GGG | - | chr2.3:5620053-5620072 | MS.gene052098:intron | 40.0% | |
| TCCAAAAGTTCTTGAGGAAC+AGG | + | chr2.3:5622054-5622073 | None:intergenic | 40.0% | |
| TTCAACAATGTTGCCTAACC+TGG | + | chr2.3:5620947-5620966 | None:intergenic | 40.0% | |
| TTCTATTTGCTCAGAGAGGT+TGG | - | chr2.3:5619067-5619086 | MS.gene052098:intron | 40.0% | |
| ! | AATTGATGGTCACTCATGCA+TGG | - | chr2.3:5619028-5619047 | MS.gene052098:intron | 40.0% |
| ! | ACCTTGATTCGTGTCATTGT+TGG | + | chr2.3:5619848-5619867 | None:intergenic | 40.0% |
| ! | ACTAGCTTCATTAGGAAGCT+CGG | + | chr2.3:5618838-5618857 | None:intergenic | 40.0% |
| ! | ATGCTGTATCAGTGTTTCTG+TGG | - | chr2.3:5620723-5620742 | MS.gene052098:intron | 40.0% |
| ! | ATTTGTTAAGGAAGGTTGCC+CGG | - | chr2.3:5618881-5618900 | MS.gene052098:intron | 40.0% |
| ! | CCTTGATTCGTGTCATTGTT+GGG | + | chr2.3:5619847-5619866 | None:intergenic | 40.0% |
| ! | CTGTCACAACTAGCTTCATT+AGG | + | chr2.3:5618846-5618865 | None:intergenic | 40.0% |
| !! | GTTGCTTTGTTTGTTGCTGT+TGG | + | chr2.3:5622107-5622126 | None:intergenic | 40.0% |
| !!! | TTTCTCTGCTTTTTCTTCGC+AGG | - | chr2.3:5618962-5618981 | MS.gene052098:intron | 40.0% |
| AATCCAATCACACCTGGTGA+CGG | - | chr2.3:5618747-5618766 | MS.gene052098:intron | 45.0% | |
| ACCAATATGCATGAGCAGTG+AGG | + | chr2.3:5622083-5622102 | None:intergenic | 45.0% | |
| ACGGTCGATTAAGGACTCAT+TGG | + | chr2.3:5621379-5621398 | None:intergenic | 45.0% | |
| AGATCCTGGAAAGTCATCCT+TGG | - | chr2.3:5619993-5620012 | MS.gene052098:intron | 45.0% | |
| ATCGTTATACCCCGACAACT+TGG | + | chr2.3:5619336-5619355 | None:intergenic | 45.0% | |
| ATTTACCCTAGGTGATCGTG+TGG | + | chr2.3:5618529-5618548 | None:intergenic | 45.0% | |
| CAGAAAAAGGCCTGCGAATT+CGG | + | chr2.3:5621128-5621147 | None:intergenic | 45.0% | |
| CCCAACAATGACACGAATCA+AGG | - | chr2.3:5619844-5619863 | MS.gene052098:intron | 45.0% | |
| CCTAGTAGCTCGTTGTTCAA+AGG | - | chr2.3:5619362-5619381 | MS.gene052098:intron | 45.0% | |
| CCTTTGAACAACGAGCTACT+AGG | + | chr2.3:5619365-5619384 | None:intergenic | 45.0% | |
| CTCATGGTATGCGAAGATTG+AGG | - | chr2.3:5620052-5620071 | MS.gene052098:intron | 45.0% | |
| GAAGCAACAGTTGCAGTTTC+AGG | + | chr2.3:5620205-5620224 | None:intergenic | 45.0% | |
| GAATCGAACCCAGTACCTTA+GGG | + | chr2.3:5620687-5620706 | None:intergenic | 45.0% | |
| GAGCATCAAGTAACCAGGTT+AGG | - | chr2.3:5620931-5620950 | MS.gene052098:intron | 45.0% | |
| GATAACCAGCTGGATGCTTT+GGG | - | chr2.3:5620431-5620450 | MS.gene052098:CDS | 45.0% | |
| GCAGTGACTACTCTACTTCA+AGG | - | chr2.3:5620326-5620345 | MS.gene052098:intron | 45.0% | |
| GCATTGCCACCTAAACCTAT+CGG | + | chr2.3:5619314-5619333 | None:intergenic | 45.0% | |
| GCGCAGAAGAGGATAGATTA+TGG | - | chr2.3:5618468-5618487 | MS.gene052098:CDS | 45.0% | |
| GTGACTACTCTACTTCAAGG+TGG | - | chr2.3:5620329-5620348 | MS.gene052098:intron | 45.0% | |
| TATGCTGTGTCAGTACCATC+GGG | - | chr2.3:5620611-5620630 | MS.gene052098:CDS | 45.0% | |
| TCCACAGAAAGCAGTTATGG+AGG | - | chr2.3:5620304-5620323 | MS.gene052098:intron | 45.0% | |
| TCCACTTCGGCAACAGAAAA+AGG | + | chr2.3:5621141-5621160 | None:intergenic | 45.0% | |
| TCCTCACTGCTCATGCATAT+TGG | - | chr2.3:5622079-5622098 | MS.gene052098:intron | 45.0% | |
| TGATAACCAGCTGGATGCTT+TGG | - | chr2.3:5620430-5620449 | MS.gene052098:CDS | 45.0% | |
| TGCAAAGCATAGGACGTATG+TGG | - | chr2.3:5621477-5621496 | MS.gene052098:CDS | 45.0% | |
| TGGTCCACAGAAAGCAGTTA+TGG | - | chr2.3:5620301-5620320 | MS.gene052098:intron | 45.0% | |
| TGTGAGATCTCAGTTCGCTT+TGG | + | chr2.3:5621099-5621118 | None:intergenic | 45.0% | |
| TGTGTGTGTTGTCAACCCTA+AGG | - | chr2.3:5620669-5620688 | MS.gene052098:intron | 45.0% | |
| TGTTGTCAACCCTAAGGTAC+TGG | - | chr2.3:5620675-5620694 | MS.gene052098:intron | 45.0% | |
| TTCAACCAGTGCTTCCACTT+CGG | + | chr2.3:5621154-5621173 | None:intergenic | 45.0% | |
| TTGCAAGTTAGGCATTACCC+TGG | + | chr2.3:5620554-5620573 | None:intergenic | 45.0% | |
| TTGCGAAGAATTAGGCTCCA+AGG | + | chr2.3:5620462-5620481 | None:intergenic | 45.0% | |
| ! | CTGATGACGTAAGTAGTGAC+AGG | - | chr2.3:5618934-5618953 | MS.gene052098:intron | 45.0% |
| ! | GCCTGTTCCTCAAGAACTTT+TGG | - | chr2.3:5622050-5622069 | MS.gene052098:intron | 45.0% |
| ! | GTTGTCAACCCTAAGGTACT+GGG | - | chr2.3:5620676-5620695 | MS.gene052098:intron | 45.0% |
| ! | TGCAACTGTTGCTTCCTTGA+AGG | - | chr2.3:5620210-5620229 | MS.gene052098:CDS | 45.0% |
| !! | CGAGTTGGTATGATTCTCCA+TGG | - | chr2.3:5620356-5620375 | MS.gene052098:intron | 45.0% |
| !! | GCTTTTTCTTCGCAGGTGTA+CGG | - | chr2.3:5618969-5618988 | MS.gene052098:intron | 45.0% |
| !! | TTAGGAAGCTCGGCTTTGAA+TGG | + | chr2.3:5618828-5618847 | None:intergenic | 45.0% |
| !! | TTTTTCGATGATCCGTCACC+AGG | + | chr2.3:5618762-5618781 | None:intergenic | 45.0% |
| AAAAAGGCCTGCGAATTCGG+CGG | + | chr2.3:5621125-5621144 | None:intergenic | 50.0% | |
| ACGCTGAGCATCAAGTAACC+AGG | - | chr2.3:5620926-5620945 | MS.gene052098:CDS | 50.0% | |
| AGGTGGCAATGCCAAGTTGT+CGG | - | chr2.3:5619322-5619341 | MS.gene052098:intron | 50.0% | |
| AGTCCCTCCGTATCCATTTC+AGG | + | chr2.3:5621051-5621070 | None:intergenic | 50.0% | |
| CATCCGACTCCGATGATTCA+TGG | - | chr2.3:5620895-5620914 | MS.gene052098:CDS | 50.0% | |
| GACAACACACACACACACTG+CGG | + | chr2.3:5620662-5620681 | None:intergenic | 50.0% | |
| GCCTCCATAACTGCTTTCTG+TGG | + | chr2.3:5620308-5620327 | None:intergenic | 50.0% | |
| GCTTCCAAGGATGACTTTCC+AGG | + | chr2.3:5620000-5620019 | None:intergenic | 50.0% | |
| GGAATCGAACCCAGTACCTT+AGG | + | chr2.3:5620688-5620707 | None:intergenic | 50.0% | |
| GGAGTCGGATGAAGTACAGA+TGG | + | chr2.3:5620886-5620905 | None:intergenic | 50.0% | |
| GGCTCACCTCTTCTTTGTTG+AGG | + | chr2.3:5622033-5622052 | None:intergenic | 50.0% | |
| TCATCATCTCGGATGCGCAA+AGG | - | chr2.3:5619877-5619896 | MS.gene052098:intron | 50.0% | |
| TCCAGTTCCAAGTCTCTCGA+CGG | + | chr2.3:5621178-5621197 | None:intergenic | 50.0% | |
| TCCTTAATCGACCGTGTGCA+TGG | - | chr2.3:5621384-5621403 | MS.gene052098:CDS | 50.0% | |
| TCGAGAGACTTGGAACTGGA+AGG | - | chr2.3:5621178-5621197 | MS.gene052098:CDS | 50.0% | |
| ! | AGAGGCATGTTGTCTGCAGT+AGG | + | chr2.3:5620524-5620543 | None:intergenic | 50.0% |
| ! | GCCTTTTTCTGTTGCCGAAG+TGG | - | chr2.3:5621137-5621156 | MS.gene052098:CDS | 50.0% |
| ! | GTTGGTTGCTGACGTTTTGG+TGG | - | chr2.3:5619085-5619104 | MS.gene052098:intron | 50.0% |
| ! | TCTCAGTTCGCTTTGGCTTC+TGG | + | chr2.3:5621092-5621111 | None:intergenic | 50.0% |
| !! | CTCTTGCAATAAAGTGCCGG+CGG | + | chr2.3:5618721-5618740 | None:intergenic | 50.0% |
| !! | CTTCAAGGTGGATTGCGAGT+TGG | - | chr2.3:5620341-5620360 | MS.gene052098:intron | 50.0% |
| !! | GAAAAACCTCAAGCGCCGAT+AGG | - | chr2.3:5619296-5619315 | MS.gene052098:intron | 50.0% |
| !! | GAGGTTGGTTGCTGACGTTT+TGG | - | chr2.3:5619082-5619101 | MS.gene052098:intron | 50.0% |
| CCTAAACCTATCGGCGCTTG+AGG | + | chr2.3:5619305-5619324 | None:intergenic | 55.0% | |
| CGGTACGCACCAACCACTTA+CGG | + | chr2.3:5620642-5620661 | None:intergenic | 55.0% | |
| GACTGGAGCATGCTGTGTTG+AGG | - | chr2.3:5619262-5619281 | MS.gene052098:intron | 55.0% | |
| GATCCGTCACCAGGTGTGAT+TGG | + | chr2.3:5618753-5618772 | None:intergenic | 55.0% | |
| GCCATGCACACGGTCGATTA+AGG | + | chr2.3:5621388-5621407 | None:intergenic | 55.0% | |
| GGTGGCAATGCCAAGTTGTC+GGG | - | chr2.3:5619323-5619342 | MS.gene052098:intron | 55.0% | |
| GTACCAATCGGTACTGCGAC+TGG | - | chr2.3:5619245-5619264 | MS.gene052098:intron | 55.0% | |
| GTGGCAATGCCAAGTTGTCG+GGG | - | chr2.3:5619324-5619343 | MS.gene052098:intron | 55.0% | |
| GTTGAAGCCGTCGAGAGACT+TGG | - | chr2.3:5621168-5621187 | MS.gene052098:CDS | 55.0% | |
| ! | GGATGCTTTGGGCTTCACCT+TGG | - | chr2.3:5620442-5620461 | MS.gene052098:CDS | 55.0% |
| ! | TGAAGCCCAAAGCATCCAGC+TGG | + | chr2.3:5620439-5620458 | None:intergenic | 55.0% |
| ! | TGTTGCCGAAGTGGAAGCAC+TGG | - | chr2.3:5621146-5621165 | MS.gene052098:CDS | 55.0% |
| !! | CAAGCGCCGATAGGTTTAGG+TGG | - | chr2.3:5619305-5619324 | MS.gene052098:intron | 55.0% |
| !! | CAATAAAGTGCCGGCGGCTA+CGG | + | chr2.3:5618715-5618734 | None:intergenic | 55.0% |
| !! | CCTCAAGCGCCGATAGGTTT+AGG | - | chr2.3:5619302-5619321 | MS.gene052098:intron | 55.0% |
| !! | CGCTTTGGCTTCTGGTTCAC+TGG | + | chr2.3:5621084-5621103 | None:intergenic | 55.0% |
| CCACTTACGGCAGAACCCGA+TGG | + | chr2.3:5620629-5620648 | None:intergenic | 60.0% | |
| CCATCGGGTTCTGCCGTAAG+TGG | - | chr2.3:5620626-5620645 | MS.gene052098:intron | 60.0% | |
| CGGGTTCTGCCGTAAGTGGT+TGG | - | chr2.3:5620630-5620649 | MS.gene052098:intron | 60.0% | |
| CTAGGTGATCGTGTGGCACG+CGG | + | chr2.3:5618522-5618541 | None:intergenic | 60.0% | |
| GCCGTCGAGAGACTTGGAAC+TGG | - | chr2.3:5621174-5621193 | MS.gene052098:CDS | 60.0% | |
| GCGTGCCACACGATCACCTA+GGG | - | chr2.3:5618521-5618540 | MS.gene052098:CDS | 60.0% | |
| TTATTGGCCACCGTAGCCGC+CGG | - | chr2.3:5618702-5618721 | MS.gene052098:intron | 60.0% | |
| !! | GCTCCAGTCGCAGTACCGAT+TGG | + | chr2.3:5619251-5619270 | None:intergenic | 60.0% |
| CACAACGCCGCCGAATTCGC+AGG | - | chr2.3:5621115-5621134 | MS.gene052098:CDS | 65.0% | |
| CGCGTGCCACACGATCACCT+AGG | - | chr2.3:5618520-5618539 | MS.gene052098:CDS | 65.0% | |
| ! | CGTGTGGCACGCGGCTTTGT+TGG | + | chr2.3:5618513-5618532 | None:intergenic | 65.0% |
| !! | TAAAGTGCCGGCGGCTACGG+TGG | + | chr2.3:5618712-5618731 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 5618462 | 5622167 | 5618462 | ID=MS.gene052098 |
| chr2.3 | mRNA | 5618462 | 5622167 | 5618462 | ID=MS.gene052098.t1;Parent=MS.gene052098 |
| chr2.3 | exon | 5622087 | 5622167 | 5622087 | ID=MS.gene052098.t1.exon1;Parent=MS.gene052098.t1 |
| chr2.3 | CDS | 5622087 | 5622167 | 5622087 | ID=cds.MS.gene052098.t1;Parent=MS.gene052098.t1 |
| chr2.3 | exon | 5621057 | 5621981 | 5621057 | ID=MS.gene052098.t1.exon2;Parent=MS.gene052098.t1 |
| chr2.3 | CDS | 5621057 | 5621981 | 5621057 | ID=cds.MS.gene052098.t1;Parent=MS.gene052098.t1 |
| chr2.3 | exon | 5620731 | 5620946 | 5620731 | ID=MS.gene052098.t1.exon3;Parent=MS.gene052098.t1 |
| chr2.3 | CDS | 5620731 | 5620946 | 5620731 | ID=cds.MS.gene052098.t1;Parent=MS.gene052098.t1 |
| chr2.3 | exon | 5620572 | 5620634 | 5620572 | ID=MS.gene052098.t1.exon4;Parent=MS.gene052098.t1 |
| chr2.3 | CDS | 5620572 | 5620634 | 5620572 | ID=cds.MS.gene052098.t1;Parent=MS.gene052098.t1 |
| chr2.3 | exon | 5620398 | 5620477 | 5620398 | ID=MS.gene052098.t1.exon5;Parent=MS.gene052098.t1 |
| chr2.3 | CDS | 5620398 | 5620477 | 5620398 | ID=cds.MS.gene052098.t1;Parent=MS.gene052098.t1 |
| chr2.3 | exon | 5620074 | 5620318 | 5620074 | ID=MS.gene052098.t1.exon6;Parent=MS.gene052098.t1 |
| chr2.3 | CDS | 5620074 | 5620318 | 5620074 | ID=cds.MS.gene052098.t1;Parent=MS.gene052098.t1 |
| chr2.3 | exon | 5619430 | 5619759 | 5619430 | ID=MS.gene052098.t1.exon7;Parent=MS.gene052098.t1 |
| chr2.3 | CDS | 5619430 | 5619759 | 5619430 | ID=cds.MS.gene052098.t1;Parent=MS.gene052098.t1 |
| chr2.3 | exon | 5619122 | 5619185 | 5619122 | ID=MS.gene052098.t1.exon8;Parent=MS.gene052098.t1 |
| chr2.3 | CDS | 5619122 | 5619185 | 5619122 | ID=cds.MS.gene052098.t1;Parent=MS.gene052098.t1 |
| chr2.3 | exon | 5618462 | 5618638 | 5618462 | ID=MS.gene052098.t1.exon9;Parent=MS.gene052098.t1 |
| chr2.3 | CDS | 5618462 | 5618638 | 5618462 | ID=cds.MS.gene052098.t1;Parent=MS.gene052098.t1 |
| Gene Sequence |
| Protein sequence |
