Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064140.t1 | XP_003609884.2 | 91.5 | 1191 | 21 | 2 | 1 | 1111 | 1 | 1191 | 0.00E+00 | 2177.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064140.t1 | F4I366 | 69.0 | 1061 | 312 | 5 | 56 | 1108 | 127 | 1178 | 0.0e+00 | 1492.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064140.t1 | G7JR14 | 91.5 | 1191 | 21 | 2 | 1 | 1111 | 1 | 1191 | 0.0e+00 | 2177.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052098 | MS.gene064140 | 0.827475 | 1.53E-54 | -1.69E-46 |
MS.gene060830 | MS.gene064140 | 0.81254 | 4.03E-51 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064140.t1 | MTR_4g124030 | 97.729 | 1057 | 23 | 1 | 56 | 1111 | 135 | 1191 | 0.0 | 2149 |
MS.gene064140.t1 | MTR_4g124030 | 98.276 | 58 | 1 | 0 | 1 | 58 | 1 | 58 | 6.50e-27 | 119 |
MS.gene064140.t1 | MTR_8g023445 | 28.571 | 1106 | 614 | 35 | 62 | 1103 | 1009 | 2002 | 7.58e-101 | 352 |
MS.gene064140.t1 | MTR_1g023500 | 27.617 | 1108 | 637 | 35 | 56 | 1094 | 164 | 1175 | 1.11e-98 | 340 |
MS.gene064140.t1 | MTR_3g105990 | 27.929 | 1067 | 622 | 38 | 83 | 1099 | 215 | 1184 | 5.03e-89 | 312 |
MS.gene064140.t1 | MTR_0002s0510 | 28.610 | 367 | 229 | 8 | 690 | 1025 | 709 | 1073 | 3.98e-28 | 124 |
MS.gene064140.t1 | MTR_4g051130 | 25.635 | 394 | 251 | 9 | 690 | 1046 | 635 | 1023 | 4.24e-26 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064140.t1 | AT1G29940 | 68.992 | 1061 | 312 | 5 | 56 | 1108 | 127 | 1178 | 0.0 | 1528 |
MS.gene064140.t1 | AT5G45140 | 27.867 | 1116 | 635 | 31 | 56 | 1103 | 148 | 1161 | 3.77e-108 | 365 |
MS.gene064140.t1 | AT5G45140 | 27.867 | 1116 | 635 | 31 | 56 | 1103 | 148 | 1161 | 3.77e-108 | 365 |
MS.gene064140.t1 | AT4G21710 | 37.575 | 503 | 261 | 9 | 613 | 1094 | 702 | 1172 | 3.68e-90 | 315 |
MS.gene064140.t1 | AT3G18090 | 28.977 | 880 | 531 | 27 | 251 | 1098 | 233 | 1050 | 2.34e-84 | 296 |
MS.gene064140.t1 | AT3G23780 | 26.481 | 1080 | 621 | 33 | 79 | 1098 | 201 | 1167 | 5.44e-82 | 291 |
MS.gene064140.t1 | AT3G23780 | 26.481 | 1080 | 621 | 33 | 79 | 1098 | 201 | 1167 | 5.44e-82 | 291 |
MS.gene064140.t1 | AT3G18090 | 26.475 | 661 | 422 | 20 | 251 | 890 | 233 | 850 | 6.43e-47 | 182 |
MS.gene064140.t1 | AT3G18090 | 26.364 | 660 | 424 | 20 | 251 | 890 | 233 | 850 | 6.76e-47 | 182 |
MS.gene064140.t1 | AT5G45140 | 24.128 | 717 | 418 | 22 | 56 | 723 | 148 | 787 | 6.05e-40 | 160 |
MS.gene064140.t1 | ATCG00190 | 25.564 | 399 | 245 | 9 | 690 | 1046 | 650 | 1038 | 5.20e-27 | 119 |
Find 250 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCTTATATATTTAGATATT+TGG | 0.150423 | 8.4:-10847562 | MS.gene064140:CDS |
ATCCTCATGCATTTCCTTCT+AGG | 0.177043 | 8.4:-10851154 | MS.gene064140:CDS |
GGAGTGCAAGGCTTGGTTTC+TGG | 0.195259 | 8.4:-10862474 | MS.gene064140:intron |
TTTCTTGGAGCTCTTCTTAC+TGG | 0.215958 | 8.4:+10847636 | None:intergenic |
ATGGAGATAAGTTTGATTTC+AGG | 0.216355 | 8.4:-10859829 | MS.gene064140:CDS |
GACTGTCTCCATGCCTTTAC+TGG | 0.220510 | 8.4:+10847590 | None:intergenic |
CTGACATGTGAGATATTTAT+TGG | 0.222815 | 8.4:-10848414 | MS.gene064140:CDS |
TTTCTGAGATCATGCATAAT+TGG | 0.229170 | 8.4:+10861910 | None:intergenic |
GAGTTTGATGGATTTGAAAA+TGG | 0.259640 | 8.4:+10865676 | None:intergenic |
CTAAATTTGTCACCAATGAT+AGG | 0.265803 | 8.4:+10851275 | None:intergenic |
TTATTGGTTGCCGGGTTATC+TGG | 0.271464 | 8.4:+10847865 | None:intergenic |
GCCAAATATCTAAATATATA+AGG | 0.285773 | 8.4:+10847561 | None:intergenic |
GATGACGATTGCCATGCTTT+TGG | 0.303530 | 8.4:-10851132 | MS.gene064140:CDS |
GTTCTTACTGTTCTTCTAGA+TGG | 0.314908 | 8.4:-10856660 | MS.gene064140:CDS |
TCTGATTACAATTTATCTTA+AGG | 0.322503 | 8.4:-10861109 | MS.gene064140:intron |
AACTTTATTACCTTCGTAAT+GGG | 0.326822 | 8.4:-10862495 | MS.gene064140:CDS |
GCCTCAAAAGCGGCCAGTTC+GGG | 0.328796 | 8.4:-10847673 | MS.gene064140:CDS |
TTCATTGTAAATGCTACAAT+AGG | 0.329799 | 8.4:+10853634 | None:intergenic |
TCTCCATGCCTTTACTGGTT+TGG | 0.330407 | 8.4:+10847595 | None:intergenic |
CATCGAGGTGCCTTATTTGC+CGG | 0.333601 | 8.4:-10858267 | MS.gene064140:CDS |
GAACTACATATTTGTTCATC+TGG | 0.335336 | 8.4:-10861426 | MS.gene064140:CDS |
ATCCCCGTATTTCCAGAAAA+TGG | 0.335691 | 8.4:+10851197 | None:intergenic |
TCAGAAGTTATATCATCTTC+AGG | 0.338084 | 8.4:-10855873 | MS.gene064140:intron |
ATCAACAAGTGAAGCCGATT+TGG | 0.339438 | 8.4:+10848518 | None:intergenic |
CTTCTAGATGGTTGTATTGT+TGG | 0.343537 | 8.4:-10856648 | MS.gene064140:CDS |
GTTCTGTACAGTGGGGTCTA+TGG | 0.349809 | 8.4:-10848444 | MS.gene064140:CDS |
CTGCATATCTTCTGCATGAT+AGG | 0.353362 | 8.4:-10847773 | MS.gene064140:CDS |
ATAACCCGGCAACCAATAAA+AGG | 0.354560 | 8.4:-10847861 | MS.gene064140:CDS |
CCCTGATAGCTTGCAAAATC+AGG | 0.355438 | 8.4:-10861151 | MS.gene064140:CDS |
AGTACGAAGTCCGGCAAATA+AGG | 0.358031 | 8.4:+10858257 | None:intergenic |
CAAGGAAGAGGCATCGGAAA+TGG | 0.360830 | 8.4:-10863821 | MS.gene064140:CDS |
TCAAATTTACATAAATTTCT+CGG | 0.373209 | 8.4:+10862160 | None:intergenic |
GTTTCATGGACAAATATATC+AGG | 0.373827 | 8.4:-10855409 | MS.gene064140:intron |
TTCCGATGCCTCTTCCTTGT+AGG | 0.374406 | 8.4:+10863825 | None:intergenic |
TGCCCTGTTCACACACCTGA+TGG | 0.380461 | 8.4:-10858092 | MS.gene064140:CDS |
CGGCCAGTTCGGGATATTCC+TGG | 0.381535 | 8.4:-10847663 | MS.gene064140:CDS |
ATGTATCACTTTCAGATGAT+AGG | 0.383427 | 8.4:-10853668 | MS.gene064140:intron |
AGTGAAGCCGATTTGGATCC+AGG | 0.387474 | 8.4:+10848525 | None:intergenic |
TAAGATATGCAGATATGATA+TGG | 0.387759 | 8.4:-10855475 | MS.gene064140:intron |
TCATTGTAAATGCTACAATA+GGG | 0.391512 | 8.4:+10853635 | None:intergenic |
ACTATATTGACCTGTTCAAA+TGG | 0.392258 | 8.4:+10856314 | None:intergenic |
TCGAAGGACAACCTTTATCT+AGG | 0.392383 | 8.4:+10853785 | None:intergenic |
AGCCTCAAAAGCGGCCAGTT+CGG | 0.393073 | 8.4:-10847674 | MS.gene064140:CDS |
TGAGGATTTATAATGAGATC+TGG | 0.393154 | 8.4:+10851170 | None:intergenic |
TTCGATCATTTGATTGAAGC+TGG | 0.393885 | 8.4:-10865707 | MS.gene064140:CDS |
AGAAGAACAGTAAGAACTTC+AGG | 0.400898 | 8.4:+10856666 | None:intergenic |
GGTTCACGAGTTTCTTTGTC+TGG | 0.403347 | 8.4:+10865818 | None:intergenic |
TGAAAGCATGCTTCCACAAA+TGG | 0.405174 | 8.4:+10847710 | None:intergenic |
CTTCAATGTCTAGAATATAT+TGG | 0.405292 | 8.4:-10862021 | MS.gene064140:intron |
GCTGATGTGTGTTCCATTTG+TGG | 0.407697 | 8.4:-10847723 | MS.gene064140:CDS |
TCATTTGATTGAAGCTGGAT+TGG | 0.413717 | 8.4:-10865702 | MS.gene064140:CDS |
ATTGAAAGTATGTTGACAAC+TGG | 0.415887 | 8.4:-10859551 | MS.gene064140:CDS |
TATCCCACTTCCAGATCATC+TGG | 0.418411 | 8.4:+10856464 | None:intergenic |
TGGACTTCCACATGTTGGTC+AGG | 0.419529 | 8.4:-10853752 | MS.gene064140:intron |
GTTGCAGTTCTGGCATATAC+AGG | 0.420036 | 8.4:-10855563 | MS.gene064140:CDS |
GCCCTGTTCACACACCTGAT+GGG | 0.420267 | 8.4:-10858091 | MS.gene064140:CDS |
ATGCACAACGACGAGTTTGA+TGG | 0.421460 | 8.4:+10865664 | None:intergenic |
GAAAAGGGAAAGGGCGTTGT+TGG | 0.421686 | 8.4:-10862114 | MS.gene064140:CDS |
TGTTTAGTCAGATTATTGAT+AGG | 0.423915 | 8.4:+10865797 | None:intergenic |
ATGCTACAATAGGGTTCATC+TGG | 0.424466 | 8.4:+10853644 | None:intergenic |
TTTGGAATCTGTTGCTGCTA+AGG | 0.425213 | 8.4:-10851114 | MS.gene064140:intron |
AAACTTTATTACCTTCGTAA+TGG | 0.425499 | 8.4:-10862496 | MS.gene064140:CDS |
TCCAGTTACTTCATCGTGAA+TGG | 0.427058 | 8.4:-10863532 | MS.gene064140:intron |
AGATGACTTGTTTAGAATCA+TGG | 0.427872 | 8.4:+10855446 | None:intergenic |
TGGATTTCCTCATGAGTTGC+AGG | 0.429898 | 8.4:+10856116 | None:intergenic |
TGCAAGCTATCAGGGTTATC+CGG | 0.431986 | 8.4:+10861159 | None:intergenic |
GTAGAACGTGGAATGTTTCA+TGG | 0.432630 | 8.4:-10855423 | MS.gene064140:CDS |
AACATTGATGAATTTCCAAC+AGG | 0.435304 | 8.4:-10855599 | MS.gene064140:CDS |
AAACGCTATAGTTGCAGTTC+TGG | 0.435840 | 8.4:-10855573 | MS.gene064140:CDS |
ATGGCAATCGTCATCCTAGA+AGG | 0.440798 | 8.4:+10851140 | None:intergenic |
TGACATGTGAGATATTTATT+GGG | 0.442222 | 8.4:-10848413 | MS.gene064140:CDS |
ACTCATTGGTCCATTTGAAC+AGG | 0.443814 | 8.4:-10856324 | MS.gene064140:intron |
ATTAAAAGAGGAGGGAAGAT+TGG | 0.449156 | 8.4:-10859857 | MS.gene064140:CDS |
TTATAATGAAAAGTATGAAA+AGG | 0.451296 | 8.4:-10862130 | MS.gene064140:CDS |
CGAAGCCGTTGATAATAAAC+AGG | 0.451989 | 8.4:+10848390 | None:intergenic |
CCCTGTTCACACACCTGATG+GGG | 0.452005 | 8.4:-10858090 | MS.gene064140:CDS |
TGCCCTTTCACCAACAAGCT+GGG | 0.456100 | 8.4:+10862089 | None:intergenic |
AATGAAAACATTGAACTCAT+TGG | 0.456136 | 8.4:-10856338 | MS.gene064140:CDS |
GCTTCACTTGTTGATGAGCT+TGG | 0.456854 | 8.4:-10848510 | MS.gene064140:CDS |
CACTTAGCATTCCTGTTGGA+TGG | 0.457079 | 8.4:+10856096 | None:intergenic |
AGCATGGGTGGAGCATATCC+TGG | 0.460373 | 8.4:-10856431 | MS.gene064140:CDS |
GGTCCAGGTAGAAATATCTT+TGG | 0.460821 | 8.4:+10856690 | None:intergenic |
ACGAAATATGTACCAGTGTC+AGG | 0.462159 | 8.4:-10856030 | MS.gene064140:intron |
TATAATGAAAAGTATGAAAA+GGG | 0.463600 | 8.4:-10862129 | MS.gene064140:CDS |
TTGCCCTTTCACCAACAAGC+TGG | 0.464006 | 8.4:+10862088 | None:intergenic |
GTTGTTGGGACCCAGCTTGT+TGG | 0.469302 | 8.4:-10862099 | MS.gene064140:CDS |
CTTCCACCATCTCCACCGTC+AGG | 0.471301 | 8.4:+10856152 | None:intergenic |
GACCCAGCTTGTTGGTGAAA+GGG | 0.472523 | 8.4:-10862091 | MS.gene064140:CDS |
CATGAGGAAATCCATCCAAC+AGG | 0.472590 | 8.4:-10856107 | MS.gene064140:CDS |
TGAGATCATGCATAATTGGT+TGG | 0.473528 | 8.4:+10861914 | None:intergenic |
TGTCCTTCGATTGATTCTGA+TGG | 0.482402 | 8.4:-10853772 | MS.gene064140:CDS |
AAGGAAGAGGCATCGGAAAT+GGG | 0.483388 | 8.4:-10863820 | MS.gene064140:CDS |
GGTTCCACTGAACTACGAAA+TGG | 0.483461 | 8.4:+10848546 | None:intergenic |
GGAATTGATATATTTCTCAC+TGG | 0.484324 | 8.4:+10856371 | None:intergenic |
CACGGTTGTAGTACGAAGTC+CGG | 0.484463 | 8.4:+10858248 | None:intergenic |
CTTCTTGACGAGATTAAAAG+AGG | 0.484881 | 8.4:-10859869 | MS.gene064140:CDS |
GACCTATAATTCTATCAAAA+CGG | 0.485327 | 8.4:-10863492 | MS.gene064140:CDS |
TTTCGTAGTTCAGTGGAACC+TGG | 0.485765 | 8.4:-10848543 | MS.gene064140:CDS |
AAAAGGGAAAGGGCGTTGTT+GGG | 0.486687 | 8.4:-10862113 | MS.gene064140:CDS |
GATGCAGATTCCAGATGATC+TGG | 0.489032 | 8.4:-10856474 | MS.gene064140:intron |
GGGAATACGATTTGGAGAAA+TGG | 0.489085 | 8.4:-10847823 | MS.gene064140:CDS |
GGAGCTAACGTCTCTGATAC+AGG | 0.489156 | 8.4:-10847489 | MS.gene064140:CDS |
GGACCCAGCTTGTTGGTGAA+AGG | 0.490200 | 8.4:-10862092 | MS.gene064140:CDS |
TAAATTTGTCACCAATGATA+GGG | 0.491135 | 8.4:+10851276 | None:intergenic |
GTAAGAACTTCAGGCGGTCC+AGG | 0.492510 | 8.4:+10856675 | None:intergenic |
GTTGGCTACAAGTATACCTC+TGG | 0.493375 | 8.4:-10859525 | MS.gene064140:CDS |
CACCCTCGAAACCCTATCAT+TGG | 0.494354 | 8.4:-10851287 | MS.gene064140:CDS |
GAAAAGTATGAAAAGGGAAA+GGG | 0.494371 | 8.4:-10862123 | MS.gene064140:CDS |
GAAAATGGCATATCGATGTC+TGG | 0.496359 | 8.4:+10851212 | None:intergenic |
GGTGATATGTTAAAAGAGAA+GGG | 0.498936 | 8.4:-10848489 | MS.gene064140:CDS |
ATCCCAGGAATATCCCGAAC+TGG | 0.499532 | 8.4:+10847660 | None:intergenic |
ACAGTCAATATAAGCAGGTT+CGG | 0.502538 | 8.4:+10853574 | None:intergenic |
GAGAAGGGATTTAATTACCA+TGG | 0.504175 | 8.4:-10848474 | MS.gene064140:CDS |
AGCAATGTGATAATCAGAAC+AGG | 0.504266 | 8.4:+10847743 | None:intergenic |
CATGCTTGCCAAACCAGTAA+AGG | 0.504843 | 8.4:-10847603 | MS.gene064140:CDS |
TAAATTGTAATCAGATGCCC+AGG | 0.505628 | 8.4:+10861117 | None:intergenic |
ACTATAGCGTTTGTGCCTGT+TGG | 0.506362 | 8.4:+10855584 | None:intergenic |
AAAAGTTCAACCGTTCAGCC+TGG | 0.506822 | 8.4:+10858319 | None:intergenic |
TTGGGCCTGTTTATTATCAA+CGG | 0.508733 | 8.4:-10848395 | MS.gene064140:CDS |
TGGTGATATGTTAAAAGAGA+AGG | 0.511185 | 8.4:-10848490 | MS.gene064140:CDS |
AATATATCAATTCCCTCCAA+TGG | 0.512239 | 8.4:-10856362 | MS.gene064140:CDS |
AGTGGAACCTGGATCCAAAT+CGG | 0.512784 | 8.4:-10848532 | MS.gene064140:CDS |
TGTATCACTTTCAGATGATA+GGG | 0.514438 | 8.4:-10853667 | MS.gene064140:intron |
GACTTCAGGCTTAACACTCC+AGG | 0.518681 | 8.4:-10858337 | MS.gene064140:CDS |
TGAAAAGTATGAAAAGGGAA+AGG | 0.521308 | 8.4:-10862124 | MS.gene064140:CDS |
CCCCATCAGGTGTGTGAACA+GGG | 0.523117 | 8.4:+10858090 | None:intergenic |
GAAAGTTTCATCTGCTGCAG+TGG | 0.524951 | 8.4:-10856574 | MS.gene064140:intron |
CGGTGTCCTGACGGTGGAGA+TGG | 0.526434 | 8.4:-10856158 | MS.gene064140:CDS |
TATGCACTTGTGCGAACGAT+GGG | 0.526924 | 8.4:+10855632 | None:intergenic |
CGTAATGGGAGTGCAAGGCT+TGG | 0.527022 | 8.4:-10862481 | MS.gene064140:CDS |
AAGTTCATTTAGTGAGAGGC+GGG | 0.528625 | 8.4:-10863247 | MS.gene064140:CDS |
AAGAGGCATCGGAAATGGGC+GGG | 0.530360 | 8.4:-10863816 | MS.gene064140:intron |
CAATCTCAATTAAAATGTTG+AGG | 0.530764 | 8.4:+10856730 | None:intergenic |
TGACACTGGTACATATTTCG+TGG | 0.531009 | 8.4:+10856032 | None:intergenic |
GATTCCAGATGATCTGGAAG+TGG | 0.536614 | 8.4:-10856468 | MS.gene064140:CDS |
TAATCACGTCAAGAAAGTCT+TGG | 0.538125 | 8.4:-10859606 | MS.gene064140:CDS |
TATGTTCCTTTGAGCATGGG+TGG | 0.540180 | 8.4:-10856443 | MS.gene064140:CDS |
GAGGATTTATAATGAGATCT+GGG | 0.544658 | 8.4:+10851171 | None:intergenic |
TATGTTGACAACTGGAAGGT+TGG | 0.546247 | 8.4:-10859543 | MS.gene064140:CDS |
TCGGTCAGTGGTGTCAATGA+GGG | 0.548017 | 8.4:+10862179 | None:intergenic |
TTATCAACGGCTTCGTCACA+TGG | 0.548246 | 8.4:-10848382 | MS.gene064140:CDS |
TAAAAGGACGAAAGCGTGGT+GGG | 0.548495 | 8.4:-10847845 | MS.gene064140:CDS |
AGTAGTAGACATGGGCAGAA+AGG | 0.551330 | 8.4:-10851254 | MS.gene064140:CDS |
GGCAAAACTAGAAGAGTGGC+TGG | 0.552035 | 8.4:-10859909 | MS.gene064140:CDS |
TATACCTCTGGATCTGCCTC+AGG | 0.553166 | 8.4:-10859513 | MS.gene064140:intron |
GGATATGTTCCTTTGAGCAT+GGG | 0.554810 | 8.4:-10856446 | MS.gene064140:CDS |
ACTATTGACTTGACAGAGCT+AGG | 0.555281 | 8.4:-10853850 | MS.gene064140:CDS |
ACTTTCTCAACCTCAGTGGA+AGG | 0.556456 | 8.4:+10856618 | None:intergenic |
TACATAAATTTCTCGGTCAG+TGG | 0.557275 | 8.4:+10862167 | None:intergenic |
CACCAATGATAGGGTTTCGA+GGG | 0.557355 | 8.4:+10851285 | None:intergenic |
ACTAGAAGAGTGGCTGGCGA+AGG | 0.558079 | 8.4:-10859903 | MS.gene064140:CDS |
ATGACTCTGAAGCTAAGTAA+TGG | 0.558396 | 8.4:-10847510 | MS.gene064140:CDS |
AAGGGGATGTGAAGAGGTAG+AGG | 0.558725 | 8.4:+10856408 | None:intergenic |
GCTCTTCTTACTGGTATCCC+AGG | 0.560155 | 8.4:+10847645 | None:intergenic |
GGCCAGTTCGGGATATTCCT+GGG | 0.563198 | 8.4:-10847662 | MS.gene064140:CDS |
CGTGATTCTCTACTAGCACA+TGG | 0.564313 | 8.4:-10847798 | MS.gene064140:CDS |
TCGGAAACTTGTGTCCTACA+AGG | 0.566048 | 8.4:-10863839 | MS.gene064140:CDS |
CTAGAAGAGTGGCTGGCGAA+GGG | 0.566149 | 8.4:-10859902 | MS.gene064140:CDS |
TTCATTTCCTGCAACTCATG+AGG | 0.567143 | 8.4:-10856123 | MS.gene064140:CDS |
CTCGGTCAGTGGTGTCAATG+AGG | 0.567179 | 8.4:+10862178 | None:intergenic |
TTGACGAGATTAAAAGAGGA+GGG | 0.567281 | 8.4:-10859865 | MS.gene064140:CDS |
ACGTCGTTCTATGATTCTCA+AGG | 0.568610 | 8.4:-10856789 | MS.gene064140:CDS |
TCACCAATGATAGGGTTTCG+AGG | 0.570830 | 8.4:+10851284 | None:intergenic |
AAAGGACGAAAGCGTGGTGG+GGG | 0.571277 | 8.4:-10847843 | MS.gene064140:CDS |
AGCAACAGATTCCAAAAGCA+TGG | 0.573677 | 8.4:+10851121 | None:intergenic |
ACCTTCGTAATGGGAGTGCA+AGG | 0.573683 | 8.4:-10862486 | MS.gene064140:CDS |
GGGATATGTTCCTTTGAGCA+TGG | 0.573702 | 8.4:-10856447 | MS.gene064140:CDS |
TGATCGAAGGATTCGATGTG+TGG | 0.574232 | 8.4:+10865722 | None:intergenic |
GTCCTACAAGGAAGAGGCAT+CGG | 0.576712 | 8.4:-10863827 | MS.gene064140:CDS |
GAATTGATATATTTCTCACT+GGG | 0.577869 | 8.4:+10856372 | None:intergenic |
ATATCTAAATATATAAGGCA+TGG | 0.581059 | 8.4:+10847566 | None:intergenic |
GATGTGAAGAGGTAGAGGCC+AGG | 0.584083 | 8.4:+10856413 | None:intergenic |
TGCGAAGTTCATTTAGTGAG+AGG | 0.589204 | 8.4:-10863251 | MS.gene064140:CDS |
GCTACACAGTCAATATAAGC+AGG | 0.591404 | 8.4:+10853569 | None:intergenic |
ACTTGTGTCCTACAAGGAAG+AGG | 0.591750 | 8.4:-10863833 | MS.gene064140:CDS |
GATGTGAAGTTCTGTACAGT+GGG | 0.593964 | 8.4:-10848452 | MS.gene064140:CDS |
AAGAGAGTACATGCTTCCTG+TGG | 0.595392 | 8.4:-10862316 | MS.gene064140:CDS |
GACAAATTTAGTAGTAGACA+TGG | 0.596142 | 8.4:-10851263 | MS.gene064140:CDS |
ATCTCGAAGGGGATGTGAAG+AGG | 0.596872 | 8.4:+10856402 | None:intergenic |
TGTACAGAACTTCACATCCA+TGG | 0.597792 | 8.4:+10848457 | None:intergenic |
AAGGTGTTTGCTCTCAGTTG+TGG | 0.599266 | 8.4:-10851235 | MS.gene064140:CDS |
ACTTGAGAGACTTTCCTCCT+CGG | 0.599985 | 8.4:-10863858 | MS.gene064140:CDS |
CTGGGCGAATAAATCTCGAA+GGG | 0.605294 | 8.4:+10856390 | None:intergenic |
CCAATAAAAGGACGAAAGCG+TGG | 0.605899 | 8.4:-10847849 | MS.gene064140:CDS |
GAAGAGGCATCGGAAATGGG+CGG | 0.605929 | 8.4:-10863817 | MS.gene064140:CDS |
TCATTTAGTGAGAGGCGGGA+AGG | 0.606069 | 8.4:-10863243 | MS.gene064140:CDS |
AGCTTCAATCAAATGATCGA+AGG | 0.606444 | 8.4:+10865709 | None:intergenic |
GTGCGAACGATGGGAGTCTG+AGG | 0.606834 | 8.4:+10855641 | None:intergenic |
ACTACACTTAGCATTCCTGT+TGG | 0.608391 | 8.4:+10856092 | None:intergenic |
TATGCTCCACCCATGCTCAA+AGG | 0.608670 | 8.4:+10856437 | None:intergenic |
TGTAGATCAGACATCAGTGC+CGG | 0.608947 | 8.4:-10861178 | MS.gene064140:CDS |
AAAAGGACGAAAGCGTGGTG+GGG | 0.608956 | 8.4:-10847844 | MS.gene064140:CDS |
GATATGCAGATATGATATGG+AGG | 0.612422 | 8.4:-10855472 | MS.gene064140:intron |
CCTGTTCACACACCTGATGG+GGG | 0.614042 | 8.4:-10858089 | MS.gene064140:CDS |
TTGTTGAAGATCGTTCTGCT+TGG | 0.614101 | 8.4:+10853824 | None:intergenic |
GAAGTTCATTTAGTGAGAGG+CGG | 0.614172 | 8.4:-10863248 | MS.gene064140:CDS |
ATTCCAGATGATCTGGAAGT+GGG | 0.615109 | 8.4:-10856467 | MS.gene064140:CDS |
GCTTAACACTCCAGGCTGAA+CGG | 0.615451 | 8.4:-10858329 | MS.gene064140:CDS |
CTTGACGAGATTAAAAGAGG+AGG | 0.615616 | 8.4:-10859866 | MS.gene064140:CDS |
GAACTTCGCACTGTACTCAT+CGG | 0.618330 | 8.4:+10863264 | None:intergenic |
ACTGGGCGAATAAATCTCGA+AGG | 0.619289 | 8.4:+10856389 | None:intergenic |
TTGTAGGACACAAGTTTCCG+AGG | 0.620494 | 8.4:+10863841 | None:intergenic |
GACACTGGTACATATTTCGT+GGG | 0.621932 | 8.4:+10856033 | None:intergenic |
ATGGAGATACGGTGTCCTGA+CGG | 0.623427 | 8.4:-10856167 | MS.gene064140:CDS |
CTTTCTCAACCTCAGTGGAA+GGG | 0.624496 | 8.4:+10856619 | None:intergenic |
TGTCCTGACGGTGGAGATGG+TGG | 0.625850 | 8.4:-10856155 | MS.gene064140:CDS |
TAGGTCGAATACATCTCTCA+AGG | 0.626077 | 8.4:+10863509 | None:intergenic |
CGGCAAATAAGGCACCTCGA+TGG | 0.627999 | 8.4:+10858268 | None:intergenic |
TTGCCAAAGATATTTCTACC+TGG | 0.629358 | 8.4:-10856693 | MS.gene064140:CDS |
CTCTGATTATGATCTGACCA+TGG | 0.631157 | 8.4:+10856056 | None:intergenic |
TAGAAGAGTGGCTGGCGAAG+GGG | 0.632445 | 8.4:-10859901 | MS.gene064140:CDS |
TCTGATGGACTTCCACATGT+TGG | 0.632803 | 8.4:-10853757 | MS.gene064140:CDS |
TGACAAACCTGACCAACATG+TGG | 0.635400 | 8.4:+10853745 | None:intergenic |
TGATAGCTTGCAAAATCAGG+AGG | 0.636823 | 8.4:-10861148 | MS.gene064140:CDS |
AACTCCATTTCGTAGTTCAG+TGG | 0.638842 | 8.4:-10848550 | MS.gene064140:CDS |
ATATGCACTTGTGCGAACGA+TGG | 0.638963 | 8.4:+10855631 | None:intergenic |
ACCTTCAAAAGAATGCCCAC+AGG | 0.639312 | 8.4:+10862300 | None:intergenic |
GCACTGTTGACCAGATAACC+CGG | 0.641974 | 8.4:-10847875 | MS.gene064140:CDS |
AAGATTGTCGAACCTGACAC+TGG | 0.642233 | 8.4:+10856018 | None:intergenic |
CATGGTTTCAGACAAATACC+AGG | 0.642270 | 8.4:-10848364 | MS.gene064140:intron |
AGAGAGTACATGCTTCCTGT+GGG | 0.642359 | 8.4:-10862315 | MS.gene064140:CDS |
TTGCAGTTCTGGCATATACA+GGG | 0.643228 | 8.4:-10855562 | MS.gene064140:intron |
TTGCCAAACCAGTAAAGGCA+TGG | 0.647104 | 8.4:-10847598 | MS.gene064140:CDS |
TGATTCTCTACTAGCACATG+GGG | 0.650364 | 8.4:-10847796 | MS.gene064140:CDS |
CCTAGGCAAAACTAGAAGAG+TGG | 0.652979 | 8.4:-10859913 | MS.gene064140:intron |
GTGATTCTCTACTAGCACAT+GGG | 0.654450 | 8.4:-10847797 | MS.gene064140:CDS |
CATTCATTGAGCCTCAAAAG+CGG | 0.654657 | 8.4:-10847683 | MS.gene064140:CDS |
AACAAGTCATCTGTAGAACG+TGG | 0.655328 | 8.4:-10855435 | MS.gene064140:CDS |
CATACCTGAGGCAGATCCAG+AGG | 0.663126 | 8.4:+10859509 | None:intergenic |
AGTCCATCAGAATCAATCGA+AGG | 0.666630 | 8.4:+10853769 | None:intergenic |
CTCGGGCAATAGCTTCCGCA+CGG | 0.667015 | 8.4:+10858230 | None:intergenic |
ATCCTAGAAGGAAATGCATG+AGG | 0.669093 | 8.4:+10851152 | None:intergenic |
ATAAAGTTTCACTGTTAACG+AGG | 0.669717 | 8.4:+10862510 | None:intergenic |
ATAGATGGCAAAGCAAACAA+TGG | 0.671615 | 8.4:-10855930 | MS.gene064140:intron |
TGGTTATATCCCTTCCACTG+AGG | 0.672040 | 8.4:-10856628 | MS.gene064140:CDS |
GAGATACGGTGTCCTGACGG+TGG | 0.674317 | 8.4:-10856164 | MS.gene064140:CDS |
ACAAATTTAGTAGTAGACAT+GGG | 0.676927 | 8.4:-10851262 | MS.gene064140:CDS |
AAAGTATGTTGACAACTGGA+AGG | 0.677218 | 8.4:-10859547 | MS.gene064140:CDS |
GCCTTGCACTCCCATTACGA+AGG | 0.680942 | 8.4:+10862485 | None:intergenic |
ATAAAAGGACGAAAGCGTGG+TGG | 0.684155 | 8.4:-10847846 | MS.gene064140:CDS |
GGATGTGAAGTTCTGTACAG+TGG | 0.689488 | 8.4:-10848453 | MS.gene064140:CDS |
TGGGCGAATAAATCTCGAAG+GGG | 0.709498 | 8.4:+10856391 | None:intergenic |
TAGGACACAAGTTTCCGAGG+AGG | 0.715281 | 8.4:+10863844 | None:intergenic |
GACAACTTTCTCAACCTCAG+TGG | 0.722219 | 8.4:+10856614 | None:intergenic |
AAATTGTAATCAGATGCCCA+GGG | 0.727412 | 8.4:+10861118 | None:intergenic |
ATATGATTCAACAATCCACA+AGG | 0.728035 | 8.4:+10858065 | None:intergenic |
AGAACAGTAAGAACTTCAGG+CGG | 0.731284 | 8.4:+10856669 | None:intergenic |
TAGTTGCTAATCTTACACCA+TGG | 0.738274 | 8.4:-10856073 | MS.gene064140:CDS |
GACTTCGTACTACAACCGTG+CGG | 0.836314 | 8.4:-10858245 | MS.gene064140:CDS |
ATGTGAAGTTCTGTACAGTG+GGG | 0.840739 | 8.4:-10848451 | MS.gene064140:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 10847482 | 10865843 | 10847482 | ID=MS.gene064140 |
chr8.4 | mRNA | 10847482 | 10865843 | 10847482 | ID=MS.gene064140.t1;Parent=MS.gene064140 |
chr8.4 | exon | 10865670 | 10865843 | 10865670 | ID=MS.gene064140.t1.exon1;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10865670 | 10865843 | 10865670 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10863817 | 10863893 | 10863817 | ID=MS.gene064140.t1.exon2;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10863817 | 10863893 | 10863817 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10863486 | 10863549 | 10863486 | ID=MS.gene064140.t1.exon3;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10863486 | 10863549 | 10863486 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10863216 | 10863286 | 10863216 | ID=MS.gene064140.t1.exon4;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10863216 | 10863286 | 10863216 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10862475 | 10862552 | 10862475 | ID=MS.gene064140.t1.exon5;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10862475 | 10862552 | 10862475 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10862302 | 10862347 | 10862302 | ID=MS.gene064140.t1.exon6;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10862302 | 10862347 | 10862302 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10862022 | 10862202 | 10862022 | ID=MS.gene064140.t1.exon7;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10862022 | 10862202 | 10862022 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10861894 | 10861946 | 10861894 | ID=MS.gene064140.t1.exon8;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10861894 | 10861946 | 10861894 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10861395 | 10861468 | 10861395 | ID=MS.gene064140.t1.exon9;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10861395 | 10861468 | 10861395 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10861110 | 10861227 | 10861110 | ID=MS.gene064140.t1.exon10;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10861110 | 10861227 | 10861110 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10859825 | 10859930 | 10859825 | ID=MS.gene064140.t1.exon11;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10859825 | 10859930 | 10859825 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10859514 | 10859629 | 10859514 | ID=MS.gene064140.t1.exon12;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10859514 | 10859629 | 10859514 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10858231 | 10858358 | 10858231 | ID=MS.gene064140.t1.exon13;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10858231 | 10858358 | 10858231 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10858051 | 10858130 | 10858051 | ID=MS.gene064140.t1.exon14;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10858051 | 10858130 | 10858051 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10856575 | 10856816 | 10856575 | ID=MS.gene064140.t1.exon15;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10856575 | 10856816 | 10856575 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10856325 | 10856489 | 10856325 | ID=MS.gene064140.t1.exon16;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10856325 | 10856489 | 10856325 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10856031 | 10856195 | 10856031 | ID=MS.gene064140.t1.exon17;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10856031 | 10856195 | 10856031 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10855874 | 10855948 | 10855874 | ID=MS.gene064140.t1.exon18;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10855874 | 10855948 | 10855874 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10855563 | 10855666 | 10855563 | ID=MS.gene064140.t1.exon19;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10855563 | 10855666 | 10855563 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10855410 | 10855485 | 10855410 | ID=MS.gene064140.t1.exon20;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10855410 | 10855485 | 10855410 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10853753 | 10853878 | 10853753 | ID=MS.gene064140.t1.exon21;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10853753 | 10853878 | 10853753 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10853541 | 10853675 | 10853541 | ID=MS.gene064140.t1.exon22;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10853541 | 10853675 | 10853541 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10851115 | 10851327 | 10851115 | ID=MS.gene064140.t1.exon23;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10851115 | 10851327 | 10851115 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10848365 | 10848604 | 10848365 | ID=MS.gene064140.t1.exon24;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10848365 | 10848604 | 10848365 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
chr8.4 | exon | 10847482 | 10847910 | 10847482 | ID=MS.gene064140.t1.exon25;Parent=MS.gene064140.t1 |
chr8.4 | CDS | 10847482 | 10847910 | 10847482 | ID=cds.MS.gene064140.t1;Parent=MS.gene064140.t1 |
Gene Sequence |
Protein sequence |