Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68633.t1 | XP_003609884.2 | 95 | 1191 | 46 | 4 | 1 | 1177 | 1 | 1191 | 0.00E+00 | 2276.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68633.t1 | F4I366 | 66.3 | 1174 | 363 | 9 | 24 | 1174 | 15 | 1178 | 0.0e+00 | 1558.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68633.t1 | G7JR14 | 95.0 | 1191 | 46 | 4 | 1 | 1177 | 1 | 1191 | 0.0e+00 | 2276.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050885 | MS.gene68633 | 0.81006 | 1.39E-50 | -1.69E-46 |
MS.gene052098 | MS.gene68633 | 0.829747 | 4.33E-55 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68633.t1 | MTR_4g124030 | 94.962 | 1191 | 46 | 4 | 1 | 1177 | 1 | 1191 | 0.0 | 2332 |
MS.gene68633.t1 | MTR_8g023445 | 27.928 | 1221 | 692 | 38 | 25 | 1169 | 894 | 2002 | 1.30e-107 | 374 |
MS.gene68633.t1 | MTR_1g023500 | 28.028 | 1156 | 659 | 37 | 82 | 1160 | 116 | 1175 | 4.76e-104 | 356 |
MS.gene68633.t1 | MTR_3g105990 | 27.210 | 1165 | 686 | 42 | 55 | 1165 | 128 | 1184 | 5.22e-92 | 322 |
MS.gene68633.t1 | MTR_0002s0510 | 28.610 | 367 | 229 | 8 | 756 | 1091 | 709 | 1073 | 3.93e-28 | 124 |
MS.gene68633.t1 | MTR_4g051130 | 25.635 | 394 | 251 | 9 | 756 | 1112 | 635 | 1023 | 3.81e-26 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68633.t1 | AT1G29940 | 66.099 | 1174 | 365 | 8 | 24 | 1174 | 15 | 1178 | 0.0 | 1598 |
MS.gene68633.t1 | AT5G45140 | 27.429 | 1225 | 707 | 34 | 25 | 1169 | 39 | 1161 | 2.95e-117 | 392 |
MS.gene68633.t1 | AT5G45140 | 27.429 | 1225 | 707 | 34 | 25 | 1169 | 39 | 1161 | 2.95e-117 | 392 |
MS.gene68633.t1 | AT4G21710 | 37.575 | 503 | 261 | 9 | 679 | 1160 | 702 | 1172 | 7.72e-90 | 315 |
MS.gene68633.t1 | AT3G18090 | 26.466 | 1160 | 662 | 37 | 84 | 1164 | 3 | 1050 | 5.72e-85 | 299 |
MS.gene68633.t1 | AT3G23780 | 25.122 | 1234 | 710 | 37 | 31 | 1164 | 48 | 1167 | 7.59e-84 | 298 |
MS.gene68633.t1 | AT3G23780 | 25.122 | 1234 | 710 | 37 | 31 | 1164 | 48 | 1167 | 7.59e-84 | 298 |
MS.gene68633.t1 | AT5G45140 | 23.971 | 826 | 490 | 25 | 25 | 789 | 39 | 787 | 1.40e-48 | 187 |
MS.gene68633.t1 | AT3G18090 | 24.123 | 941 | 553 | 30 | 84 | 956 | 3 | 850 | 6.13e-48 | 186 |
MS.gene68633.t1 | AT3G18090 | 24.123 | 941 | 553 | 30 | 84 | 956 | 3 | 850 | 6.71e-48 | 186 |
MS.gene68633.t1 | ATCG00190 | 25.564 | 399 | 245 | 9 | 756 | 1112 | 650 | 1038 | 4.00e-27 | 120 |
Find 260 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCTTATATATTTAGATATT+TGG | 0.150423 | 8.1:-7420831 | MS.gene68633:CDS |
ATCCTCATGCATTTCCTTCT+AGG | 0.177043 | 8.1:-7424414 | MS.gene68633:CDS |
GGAGTGCAAGGCTTGGTTTC+TGG | 0.195259 | 8.1:-7435727 | MS.gene68633:intron |
TTTCTTGGAGCTCTTCTTAC+TGG | 0.215958 | 8.1:+7420905 | None:intergenic |
ATGGAGATAAGTTTGATTTC+AGG | 0.216355 | 8.1:-7433084 | MS.gene68633:CDS |
GACTGTCTCCATGCCTTTAC+TGG | 0.220510 | 8.1:+7420859 | None:intergenic |
CTGACATGTGAGATATTTAT+TGG | 0.222815 | 8.1:-7421673 | MS.gene68633:CDS |
TTTCTGAGATCATGCATAAT+TGG | 0.229170 | 8.1:+7435166 | None:intergenic |
CAAGCAAAACTCACATATTC+AGG | 0.244547 | 8.1:-7438629 | MS.gene68633:CDS |
GAGTTTGATGGATTTGAAAA+TGG | 0.259640 | 8.1:+7438992 | None:intergenic |
CTAAATTTGTCACCAATGAT+AGG | 0.265803 | 8.1:+7424535 | None:intergenic |
TTATTGGTTGCCGGGTTATC+TGG | 0.271464 | 8.1:+7421134 | None:intergenic |
GTAACAAACCTGTAGCATTA+TGG | 0.280077 | 8.1:+7438526 | None:intergenic |
GCCAAATATCTAAATATATA+AGG | 0.285773 | 8.1:+7420830 | None:intergenic |
GATGACGATTGCCATGCTTT+TGG | 0.303530 | 8.1:-7424392 | MS.gene68633:CDS |
GTTCTTACTGTTCTTCTAGA+TGG | 0.314908 | 8.1:-7429919 | MS.gene68633:CDS |
TCTGATTACAATTTATCTTA+AGG | 0.322503 | 8.1:-7434365 | MS.gene68633:intron |
AACTTTATTACCTTCGTAAT+GGG | 0.326822 | 8.1:-7435748 | MS.gene68633:CDS |
GCCTCAAAAGCGGCCAGTTC+GGG | 0.328796 | 8.1:-7420942 | MS.gene68633:CDS |
TTCATTGTAAATGCTACAAT+AGG | 0.329799 | 8.1:+7426893 | None:intergenic |
TCTCCATGCCTTTACTGGTT+TGG | 0.330407 | 8.1:+7420864 | None:intergenic |
CATCGAGGTGCCTTATTTGC+CGG | 0.333601 | 8.1:-7431522 | MS.gene68633:CDS |
GAACTACATATTTGTTCATC+TGG | 0.335336 | 8.1:-7434682 | MS.gene68633:CDS |
ATCCCCGTATTTCCAGAAAA+TGG | 0.335691 | 8.1:+7424457 | None:intergenic |
TCAGAAGTTATATCATCTTC+AGG | 0.338084 | 8.1:-7429133 | MS.gene68633:intron |
ATCAACAAGTGAAGCCGATT+TGG | 0.339438 | 8.1:+7421777 | None:intergenic |
CTTCTAGATGGTTGTATTGT+TGG | 0.343537 | 8.1:-7429907 | MS.gene68633:CDS |
GTTCTGTACAGTGGGGTCTA+TGG | 0.349809 | 8.1:-7421703 | MS.gene68633:CDS |
CTGCATATCTTCTGCATGAT+AGG | 0.353362 | 8.1:-7421042 | MS.gene68633:CDS |
ATAACCCGGCAACCAATAAA+AGG | 0.354560 | 8.1:-7421130 | MS.gene68633:CDS |
CCCTGATAGCTTGCAAAATC+AGG | 0.355438 | 8.1:-7434407 | MS.gene68633:CDS |
AGTACGAAGTCCGGCAAATA+AGG | 0.358031 | 8.1:+7431512 | None:intergenic |
CAAGGAAGAGGCATCGGAAA+TGG | 0.360830 | 8.1:-7437074 | MS.gene68633:CDS |
TAACAAACCTGTAGCATTAT+GGG | 0.363680 | 8.1:+7438527 | None:intergenic |
TCAAATTTACATAAATTTCT+CGG | 0.373209 | 8.1:+7435416 | None:intergenic |
GTTTCATGGACAAATATATC+AGG | 0.373827 | 8.1:-7428669 | MS.gene68633:intron |
TTCCGATGCCTCTTCCTTGT+AGG | 0.374406 | 8.1:+7437078 | None:intergenic |
TGCCCTGTTCACACACCTGA+TGG | 0.380461 | 8.1:-7431347 | MS.gene68633:CDS |
CGGCCAGTTCGGGATATTCC+TGG | 0.381535 | 8.1:-7420932 | MS.gene68633:CDS |
ATGTATCACTTTCAGATGAT+AGG | 0.383427 | 8.1:-7426927 | MS.gene68633:intron |
TGTTTAGTCAAATTATTGAT+AGG | 0.386512 | 8.1:+7439113 | None:intergenic |
AGTGAAGCCGATTTGGATCC+AGG | 0.387474 | 8.1:+7421784 | None:intergenic |
TAAGATATGCAGATATGATA+TGG | 0.387759 | 8.1:-7428735 | MS.gene68633:intron |
TCATTGTAAATGCTACAATA+GGG | 0.391512 | 8.1:+7426894 | None:intergenic |
ACTATATTGACCTGTTCAAA+TGG | 0.392258 | 8.1:+7429573 | None:intergenic |
TCGAAGGACAACCTTTATCT+AGG | 0.392383 | 8.1:+7427044 | None:intergenic |
AGCCTCAAAAGCGGCCAGTT+CGG | 0.393073 | 8.1:-7420943 | MS.gene68633:CDS |
TGAGGATTTATAATGAGATC+TGG | 0.393154 | 8.1:+7424430 | None:intergenic |
TTCGATCATTTGATTGAAGC+TGG | 0.393885 | 8.1:-7439023 | MS.gene68633:CDS |
AGAAGAACAGTAAGAACTTC+AGG | 0.400898 | 8.1:+7429925 | None:intergenic |
GGTTCACGAGTTTCTTTGTC+TGG | 0.403347 | 8.1:+7439134 | None:intergenic |
ACTGGGCGAATAAATCTAGA+AGG | 0.404724 | 8.1:+7429648 | None:intergenic |
TGAAAGCATGCTTCCACAAA+TGG | 0.405174 | 8.1:+7420979 | None:intergenic |
CTTCAATGTCTAGAATATAT+TGG | 0.405292 | 8.1:-7435277 | MS.gene68633:intron |
GCTGATGTGTGTTCCATTTG+TGG | 0.407697 | 8.1:-7420992 | MS.gene68633:CDS |
TCATTTGATTGAAGCTGGAT+TGG | 0.413717 | 8.1:-7439018 | MS.gene68633:CDS |
ATTGAAAGTATGTTGACAAC+TGG | 0.415887 | 8.1:-7432806 | MS.gene68633:CDS |
TATCCCACTTCCAGATCATC+TGG | 0.418411 | 8.1:+7429723 | None:intergenic |
TGGACTTCCACATGTTGGTC+AGG | 0.419529 | 8.1:-7427011 | MS.gene68633:intron |
GTTGCAGTTCTGGCATATAC+AGG | 0.420036 | 8.1:-7428823 | MS.gene68633:CDS |
GCCCTGTTCACACACCTGAT+GGG | 0.420267 | 8.1:-7431346 | MS.gene68633:CDS |
ATGCACAACGACGAGTTTGA+TGG | 0.421460 | 8.1:+7438980 | None:intergenic |
GAAAAGGGAAAGGGCGTTGT+TGG | 0.421686 | 8.1:-7435370 | MS.gene68633:CDS |
ATGCTACAATAGGGTTCATC+TGG | 0.424466 | 8.1:+7426903 | None:intergenic |
TTTGGAATCTGTTGCTGCTA+AGG | 0.425213 | 8.1:-7424374 | MS.gene68633:intron |
AAACTTTATTACCTTCGTAA+TGG | 0.425499 | 8.1:-7435749 | MS.gene68633:CDS |
TCCAGTTACTTCATCGTGAA+TGG | 0.427058 | 8.1:-7436785 | MS.gene68633:intron |
AGATGACTTGTTTAGAATCA+TGG | 0.427872 | 8.1:+7428706 | None:intergenic |
TGGATTTCCTCATGAGTTGC+AGG | 0.429898 | 8.1:+7429376 | None:intergenic |
TGCAAGCTATCAGGGTTATC+CGG | 0.431986 | 8.1:+7434415 | None:intergenic |
GTAGAACGTGGAATGTTTCA+TGG | 0.432630 | 8.1:-7428683 | MS.gene68633:CDS |
AACATTGATGAATTTCCAAC+AGG | 0.435304 | 8.1:-7428859 | MS.gene68633:CDS |
AAACGCTATAGTTGCAGTTC+TGG | 0.435840 | 8.1:-7428833 | MS.gene68633:CDS |
ATGGCAATCGTCATCCTAGA+AGG | 0.440798 | 8.1:+7424400 | None:intergenic |
TGACATGTGAGATATTTATT+GGG | 0.442222 | 8.1:-7421672 | MS.gene68633:CDS |
ACTCATTGGTCCATTTGAAC+AGG | 0.443814 | 8.1:-7429583 | MS.gene68633:intron |
ATTAAAAGAGGAGGGAAGAT+TGG | 0.449156 | 8.1:-7433112 | MS.gene68633:CDS |
TTATAATGAAAAGTATGAAA+AGG | 0.451296 | 8.1:-7435386 | MS.gene68633:CDS |
CGAAGCCGTTGATAATAAAC+AGG | 0.451989 | 8.1:+7421649 | None:intergenic |
CCCTGTTCACACACCTGATG+GGG | 0.452005 | 8.1:-7431345 | MS.gene68633:CDS |
GCAGTTTCCCATAATGCTAC+AGG | 0.456087 | 8.1:-7438534 | MS.gene68633:intron |
TGCCCTTTCACCAACAAGCT+GGG | 0.456100 | 8.1:+7435345 | None:intergenic |
AATGAAAACATTGAACTCAT+TGG | 0.456136 | 8.1:-7429597 | MS.gene68633:CDS |
GCTTCACTTGTTGATGAGCT+TGG | 0.456854 | 8.1:-7421769 | MS.gene68633:CDS |
CACTTAGCATTCCTGTTGGA+TGG | 0.457079 | 8.1:+7429356 | None:intergenic |
AGCATGGGTGGAGCATATCC+TGG | 0.460373 | 8.1:-7429690 | MS.gene68633:CDS |
GGTCCAGGTAGAAATATCTT+TGG | 0.460821 | 8.1:+7429949 | None:intergenic |
ACGAAATATGTACCAGTGTC+AGG | 0.462159 | 8.1:-7429290 | MS.gene68633:intron |
TATAATGAAAAGTATGAAAA+GGG | 0.463600 | 8.1:-7435385 | MS.gene68633:CDS |
TTGCCCTTTCACCAACAAGC+TGG | 0.464006 | 8.1:+7435344 | None:intergenic |
GTTGTTGGGACCCAGCTTGT+TGG | 0.469302 | 8.1:-7435355 | MS.gene68633:CDS |
CTTCCACCATCTCCACCGTC+AGG | 0.471301 | 8.1:+7429412 | None:intergenic |
GACCCAGCTTGTTGGTGAAA+GGG | 0.472523 | 8.1:-7435347 | MS.gene68633:CDS |
CATGAGGAAATCCATCCAAC+AGG | 0.472590 | 8.1:-7429367 | MS.gene68633:CDS |
TGAGATCATGCATAATTGGT+TGG | 0.473528 | 8.1:+7435170 | None:intergenic |
TGTCCTTCGATTGATTCTGA+TGG | 0.482402 | 8.1:-7427031 | MS.gene68633:CDS |
AAGGAAGAGGCATCGGAAAT+GGG | 0.483388 | 8.1:-7437073 | MS.gene68633:CDS |
GGTTCCACTGAACTACGAAA+TGG | 0.483461 | 8.1:+7421805 | None:intergenic |
GGAATTGATATATTTCTCAC+TGG | 0.484324 | 8.1:+7429630 | None:intergenic |
CACGGTTGTAGTACGAAGTC+CGG | 0.484463 | 8.1:+7431503 | None:intergenic |
CTTCTTGACGAGATTAAAAG+AGG | 0.484881 | 8.1:-7433124 | MS.gene68633:CDS |
GACCTATAATTCTATCAAAA+CGG | 0.485327 | 8.1:-7436745 | MS.gene68633:CDS |
TTTCGTAGTTCAGTGGAACC+TGG | 0.485765 | 8.1:-7421802 | MS.gene68633:CDS |
AAAAGGGAAAGGGCGTTGTT+GGG | 0.486687 | 8.1:-7435369 | MS.gene68633:CDS |
GATGCAGATTCCAGATGATC+TGG | 0.489032 | 8.1:-7429733 | MS.gene68633:intron |
GGGAATACGATTTGGAGAAA+TGG | 0.489085 | 8.1:-7421092 | MS.gene68633:CDS |
GGAGCTAACGTCTCTGATAC+AGG | 0.489156 | 8.1:-7420758 | MS.gene68633:CDS |
GGACCCAGCTTGTTGGTGAA+AGG | 0.490200 | 8.1:-7435348 | MS.gene68633:CDS |
TAAATTTGTCACCAATGATA+GGG | 0.491135 | 8.1:+7424536 | None:intergenic |
GTAAGAACTTCAGGCGGTCC+AGG | 0.492510 | 8.1:+7429934 | None:intergenic |
GTTGGCTACAAGTATACCTC+TGG | 0.493375 | 8.1:-7432780 | MS.gene68633:CDS |
CACCCTCGAAACCCTATCAT+TGG | 0.494354 | 8.1:-7424547 | MS.gene68633:CDS |
GAAAAGTATGAAAAGGGAAA+GGG | 0.494371 | 8.1:-7435379 | MS.gene68633:CDS |
AAATTGAAACTTGCTTCAAA+CGG | 0.494700 | 8.1:+7438754 | None:intergenic |
GAAAATGGCATATCGATGTC+TGG | 0.496359 | 8.1:+7424472 | None:intergenic |
GGTGATATGTTAAAAGAGAA+GGG | 0.498936 | 8.1:-7421748 | MS.gene68633:CDS |
ATCCCAGGAATATCCCGAAC+TGG | 0.499532 | 8.1:+7420929 | None:intergenic |
ACAGTCAATATAAGCAGGTT+CGG | 0.502538 | 8.1:+7426833 | None:intergenic |
GAGAAGGGATTTAATTACCA+TGG | 0.504175 | 8.1:-7421733 | MS.gene68633:CDS |
AGCAATGTGATAATCAGAAC+AGG | 0.504266 | 8.1:+7421012 | None:intergenic |
CATGCTTGCCAAACCAGTAA+AGG | 0.504843 | 8.1:-7420872 | MS.gene68633:CDS |
TAAATTGTAATCAGATGCCC+AGG | 0.505628 | 8.1:+7434373 | None:intergenic |
ACTATAGCGTTTGTGCCTGT+TGG | 0.506362 | 8.1:+7428844 | None:intergenic |
AAAAGTTCAACCGTTCAGCC+TGG | 0.506822 | 8.1:+7431574 | None:intergenic |
TTGGGCCTGTTTATTATCAA+CGG | 0.508733 | 8.1:-7421654 | MS.gene68633:CDS |
TGGTGATATGTTAAAAGAGA+AGG | 0.511185 | 8.1:-7421749 | MS.gene68633:CDS |
AATATATCAATTCCCTCCAA+TGG | 0.512239 | 8.1:-7429621 | MS.gene68633:CDS |
AAGGGGATGTGAAGAGGTAG+AGG | 0.512648 | 8.1:+7429667 | None:intergenic |
AGTGGAACCTGGATCCAAAT+CGG | 0.512784 | 8.1:-7421791 | MS.gene68633:CDS |
TGTATCACTTTCAGATGATA+GGG | 0.514438 | 8.1:-7426926 | MS.gene68633:intron |
GACTTCAGGCTTAACACTCC+AGG | 0.518681 | 8.1:-7431592 | MS.gene68633:CDS |
TGAAAAGTATGAAAAGGGAA+AGG | 0.521308 | 8.1:-7435380 | MS.gene68633:CDS |
CCCCATCAGGTGTGTGAACA+GGG | 0.523117 | 8.1:+7431345 | None:intergenic |
GAAAGTTTCATCTGCTGCAG+TGG | 0.524951 | 8.1:-7429833 | MS.gene68633:intron |
CGGTGTCCTGACGGTGGAGA+TGG | 0.526434 | 8.1:-7429418 | MS.gene68633:CDS |
TATGCACTTGTGCGAACGAT+GGG | 0.526924 | 8.1:+7428892 | None:intergenic |
CGTAATGGGAGTGCAAGGCT+TGG | 0.527022 | 8.1:-7435734 | MS.gene68633:CDS |
AAGTTCATTTAGTGAGAGGC+GGG | 0.528625 | 8.1:-7436500 | MS.gene68633:CDS |
AAGAGGCATCGGAAATGGGC+GGG | 0.530360 | 8.1:-7437069 | MS.gene68633:intron |
CAATCTCAATTAAAATGTTG+AGG | 0.530764 | 8.1:+7429989 | None:intergenic |
TGACACTGGTACATATTTCG+TGG | 0.531009 | 8.1:+7429292 | None:intergenic |
ATACTCTCGCCTCAGAAGGA+TGG | 0.534809 | 8.1:-7438808 | MS.gene68633:CDS |
ATGACTCTAAAGCTAAGTAA+TGG | 0.536288 | 8.1:-7420779 | MS.gene68633:CDS |
GATTCCAGATGATCTGGAAG+TGG | 0.536614 | 8.1:-7429727 | MS.gene68633:CDS |
TAATCACGTCAAGAAAGTCT+TGG | 0.538125 | 8.1:-7432861 | MS.gene68633:CDS |
TATGTTCCTTTGAGCATGGG+TGG | 0.540180 | 8.1:-7429702 | MS.gene68633:CDS |
TAAAATACTCTCGCCTCAGA+AGG | 0.541776 | 8.1:-7438812 | MS.gene68633:CDS |
GAGGATTTATAATGAGATCT+GGG | 0.544658 | 8.1:+7424431 | None:intergenic |
TATGTTGACAACTGGAAGGT+TGG | 0.546247 | 8.1:-7432798 | MS.gene68633:CDS |
TCGGTCAGTGGTGTCAATGA+GGG | 0.548017 | 8.1:+7435435 | None:intergenic |
TTATCAACGGCTTCGTCACA+TGG | 0.548246 | 8.1:-7421641 | MS.gene68633:CDS |
TAAAAGGACGAAAGCGTGGT+GGG | 0.548495 | 8.1:-7421114 | MS.gene68633:CDS |
AGTAGTAGACATGGGCAGAA+AGG | 0.551330 | 8.1:-7424514 | MS.gene68633:CDS |
GGCAAAACTAGAAGAGTGGC+TGG | 0.552035 | 8.1:-7433164 | MS.gene68633:CDS |
TATACCTCTGGATCTGCCTC+AGG | 0.553166 | 8.1:-7432768 | MS.gene68633:intron |
GGATATGTTCCTTTGAGCAT+GGG | 0.554810 | 8.1:-7429705 | MS.gene68633:CDS |
ACTATTGACTTGACAGAGCT+AGG | 0.555281 | 8.1:-7427109 | MS.gene68633:CDS |
ACTTTCTCAACCTCAGTGGA+AGG | 0.556456 | 8.1:+7429877 | None:intergenic |
TACATAAATTTCTCGGTCAG+TGG | 0.557275 | 8.1:+7435423 | None:intergenic |
CACCAATGATAGGGTTTCGA+GGG | 0.557355 | 8.1:+7424545 | None:intergenic |
ACTAGAAGAGTGGCTGGCGA+AGG | 0.558079 | 8.1:-7433158 | MS.gene68633:CDS |
GCTCTTCTTACTGGTATCCC+AGG | 0.560155 | 8.1:+7420914 | None:intergenic |
ATCTAGAAGGGGATGTGAAG+AGG | 0.561686 | 8.1:+7429661 | None:intergenic |
GGCCAGTTCGGGATATTCCT+GGG | 0.563198 | 8.1:-7420931 | MS.gene68633:CDS |
CGTGATTCTCTACTAGCACA+TGG | 0.564313 | 8.1:-7421067 | MS.gene68633:CDS |
TCGGAAACTTGTGTCCTACA+AGG | 0.566048 | 8.1:-7437092 | MS.gene68633:CDS |
CTAGAAGAGTGGCTGGCGAA+GGG | 0.566149 | 8.1:-7433157 | MS.gene68633:CDS |
TTCATTTCCTGCAACTCATG+AGG | 0.567143 | 8.1:-7429383 | MS.gene68633:CDS |
CTCGGTCAGTGGTGTCAATG+AGG | 0.567179 | 8.1:+7435434 | None:intergenic |
TTGACGAGATTAAAAGAGGA+GGG | 0.567281 | 8.1:-7433120 | MS.gene68633:CDS |
ACGTCGTTCTATGATTCTCA+AGG | 0.568610 | 8.1:-7430048 | MS.gene68633:CDS |
TCACCAATGATAGGGTTTCG+AGG | 0.570830 | 8.1:+7424544 | None:intergenic |
AAAGGACGAAAGCGTGGTGG+GGG | 0.571277 | 8.1:-7421112 | MS.gene68633:CDS |
CTGGGCGAATAAATCTAGAA+GGG | 0.573428 | 8.1:+7429649 | None:intergenic |
AGCAACAGATTCCAAAAGCA+TGG | 0.573677 | 8.1:+7424381 | None:intergenic |
ACCTTCGTAATGGGAGTGCA+AGG | 0.573683 | 8.1:-7435739 | MS.gene68633:CDS |
GGGATATGTTCCTTTGAGCA+TGG | 0.573702 | 8.1:-7429706 | MS.gene68633:CDS |
TGATCGAAGGATTCGATGTG+TGG | 0.574232 | 8.1:+7439038 | None:intergenic |
GTCCTACAAGGAAGAGGCAT+CGG | 0.576712 | 8.1:-7437080 | MS.gene68633:CDS |
GAATTGATATATTTCTCACT+GGG | 0.577869 | 8.1:+7429631 | None:intergenic |
ATATCTAAATATATAAGGCA+TGG | 0.581059 | 8.1:+7420835 | None:intergenic |
TTGGCGATTCCATCCTTCTG+AGG | 0.581121 | 8.1:+7438799 | None:intergenic |
GATGTGAAGAGGTAGAGGCC+AGG | 0.584083 | 8.1:+7429672 | None:intergenic |
TGCGAAGTTCATTTAGTGAG+AGG | 0.589204 | 8.1:-7436504 | MS.gene68633:CDS |
GCTACACAGTCAATATAAGC+AGG | 0.591404 | 8.1:+7426828 | None:intergenic |
ACTTGTGTCCTACAAGGAAG+AGG | 0.591750 | 8.1:-7437086 | MS.gene68633:CDS |
GATGTGAAGTTCTGTACAGT+GGG | 0.593964 | 8.1:-7421711 | MS.gene68633:CDS |
AAGAGAGTACATGCTTCCTG+TGG | 0.595392 | 8.1:-7435572 | MS.gene68633:CDS |
GACAAATTTAGTAGTAGACA+TGG | 0.596142 | 8.1:-7424523 | MS.gene68633:CDS |
TGTACAGAACTTCACATCCA+TGG | 0.597792 | 8.1:+7421716 | None:intergenic |
AAGGTGTTTGCTCTCAGTTG+TGG | 0.599266 | 8.1:-7424495 | MS.gene68633:CDS |
ACTTGAGAGACTTTCCTCCT+CGG | 0.599985 | 8.1:-7437111 | MS.gene68633:CDS |
CCAATAAAAGGACGAAAGCG+TGG | 0.605899 | 8.1:-7421118 | MS.gene68633:CDS |
GAAGAGGCATCGGAAATGGG+CGG | 0.605929 | 8.1:-7437070 | MS.gene68633:CDS |
TCATTTAGTGAGAGGCGGGA+AGG | 0.606069 | 8.1:-7436496 | MS.gene68633:CDS |
AGCTTCAATCAAATGATCGA+AGG | 0.606444 | 8.1:+7439025 | None:intergenic |
GTGCGAACGATGGGAGTCTG+AGG | 0.606834 | 8.1:+7428901 | None:intergenic |
ACTACACTTAGCATTCCTGT+TGG | 0.608391 | 8.1:+7429352 | None:intergenic |
TATGCTCCACCCATGCTCAA+AGG | 0.608670 | 8.1:+7429696 | None:intergenic |
TGTAGATCAGACATCAGTGC+CGG | 0.608947 | 8.1:-7434434 | MS.gene68633:CDS |
AAAAGGACGAAAGCGTGGTG+GGG | 0.608956 | 8.1:-7421113 | MS.gene68633:CDS |
GATATGCAGATATGATATGG+AGG | 0.612422 | 8.1:-7428732 | MS.gene68633:intron |
CCTGTTCACACACCTGATGG+GGG | 0.614042 | 8.1:-7431344 | MS.gene68633:CDS |
TTGTTGAAGATCGTTCTGCT+TGG | 0.614101 | 8.1:+7427083 | None:intergenic |
GAAGTTCATTTAGTGAGAGG+CGG | 0.614172 | 8.1:-7436501 | MS.gene68633:CDS |
ATTCCAGATGATCTGGAAGT+GGG | 0.615109 | 8.1:-7429726 | MS.gene68633:CDS |
GCTTAACACTCCAGGCTGAA+CGG | 0.615451 | 8.1:-7431584 | MS.gene68633:CDS |
CTTGACGAGATTAAAAGAGG+AGG | 0.615616 | 8.1:-7433121 | MS.gene68633:CDS |
GAACTTCGCACTGTACTCAT+CGG | 0.618330 | 8.1:+7436517 | None:intergenic |
TTGTAGGACACAAGTTTCCG+AGG | 0.620494 | 8.1:+7437094 | None:intergenic |
GACACTGGTACATATTTCGT+GGG | 0.621932 | 8.1:+7429293 | None:intergenic |
ATGGAGATACGGTGTCCTGA+CGG | 0.623427 | 8.1:-7429427 | MS.gene68633:CDS |
CTTTCTCAACCTCAGTGGAA+GGG | 0.624496 | 8.1:+7429878 | None:intergenic |
TGTCCTGACGGTGGAGATGG+TGG | 0.625850 | 8.1:-7429415 | MS.gene68633:CDS |
TAGGTCGAATACATCTCTCA+AGG | 0.626077 | 8.1:+7436762 | None:intergenic |
AAGCAAAACTCACATATTCA+GGG | 0.627750 | 8.1:-7438628 | MS.gene68633:CDS |
CGGCAAATAAGGCACCTCGA+TGG | 0.627999 | 8.1:+7431523 | None:intergenic |
TTGCCAAAGATATTTCTACC+TGG | 0.629358 | 8.1:-7429952 | MS.gene68633:CDS |
CTCTGATTATGATCTGACCA+TGG | 0.631157 | 8.1:+7429316 | None:intergenic |
TAGAAGAGTGGCTGGCGAAG+GGG | 0.632445 | 8.1:-7433156 | MS.gene68633:CDS |
TCTGATGGACTTCCACATGT+TGG | 0.632803 | 8.1:-7427016 | MS.gene68633:CDS |
TGACAAACCTGACCAACATG+TGG | 0.635400 | 8.1:+7427004 | None:intergenic |
TGATAGCTTGCAAAATCAGG+AGG | 0.636823 | 8.1:-7434404 | MS.gene68633:CDS |
AACTCCATTTCGTAGTTCAG+TGG | 0.638842 | 8.1:-7421809 | MS.gene68633:CDS |
ATATGCACTTGTGCGAACGA+TGG | 0.638963 | 8.1:+7428891 | None:intergenic |
ACCTTCAAAAGAATGCCCAC+AGG | 0.639312 | 8.1:+7435556 | None:intergenic |
GCACTGTTGACCAGATAACC+CGG | 0.641974 | 8.1:-7421144 | MS.gene68633:CDS |
AAGATTGTCGAACCTGACAC+TGG | 0.642233 | 8.1:+7429278 | None:intergenic |
CATGGTTTCAGACAAATACC+AGG | 0.642270 | 8.1:-7421623 | MS.gene68633:intron |
AGAGAGTACATGCTTCCTGT+GGG | 0.642359 | 8.1:-7435571 | MS.gene68633:CDS |
TTGCAGTTCTGGCATATACA+GGG | 0.643228 | 8.1:-7428822 | MS.gene68633:intron |
TTGCCAAACCAGTAAAGGCA+TGG | 0.647104 | 8.1:-7420867 | MS.gene68633:CDS |
TGATTCTCTACTAGCACATG+GGG | 0.650364 | 8.1:-7421065 | MS.gene68633:CDS |
CCTAGGCAAAACTAGAAGAG+TGG | 0.652979 | 8.1:-7433168 | MS.gene68633:intron |
GTGATTCTCTACTAGCACAT+GGG | 0.654450 | 8.1:-7421066 | MS.gene68633:CDS |
CATTCATTGAGCCTCAAAAG+CGG | 0.654657 | 8.1:-7420952 | MS.gene68633:CDS |
AACAAGTCATCTGTAGAACG+TGG | 0.655328 | 8.1:-7428695 | MS.gene68633:CDS |
TGGGCGAATAAATCTAGAAG+GGG | 0.662753 | 8.1:+7429650 | None:intergenic |
CATACCTGAGGCAGATCCAG+AGG | 0.663126 | 8.1:+7432764 | None:intergenic |
AGTCCATCAGAATCAATCGA+AGG | 0.666630 | 8.1:+7427028 | None:intergenic |
CTCGGGCAATAGCTTCCGCA+CGG | 0.667015 | 8.1:+7431485 | None:intergenic |
ATCCTAGAAGGAAATGCATG+AGG | 0.669093 | 8.1:+7424412 | None:intergenic |
ATAAAGTTTCACTGTTAACG+AGG | 0.669717 | 8.1:+7435763 | None:intergenic |
ATAGATGGCAAAGCAAACAA+TGG | 0.671615 | 8.1:-7429190 | MS.gene68633:intron |
TGGTTATATCCCTTCCACTG+AGG | 0.672040 | 8.1:-7429887 | MS.gene68633:CDS |
GAGATACGGTGTCCTGACGG+TGG | 0.674317 | 8.1:-7429424 | MS.gene68633:CDS |
ACAAATTTAGTAGTAGACAT+GGG | 0.676927 | 8.1:-7424522 | MS.gene68633:CDS |
AAAGTATGTTGACAACTGGA+AGG | 0.677218 | 8.1:-7432802 | MS.gene68633:CDS |
GCCTTGCACTCCCATTACGA+AGG | 0.680942 | 8.1:+7435738 | None:intergenic |
ATAAAAGGACGAAAGCGTGG+TGG | 0.684155 | 8.1:-7421115 | MS.gene68633:CDS |
GGATGTGAAGTTCTGTACAG+TGG | 0.689488 | 8.1:-7421712 | MS.gene68633:CDS |
TAGGACACAAGTTTCCGAGG+AGG | 0.715281 | 8.1:+7437097 | None:intergenic |
GACAACTTTCTCAACCTCAG+TGG | 0.722219 | 8.1:+7429873 | None:intergenic |
AAATTGTAATCAGATGCCCA+GGG | 0.727412 | 8.1:+7434374 | None:intergenic |
ATATGATTCAACAATCCACA+AGG | 0.728035 | 8.1:+7431320 | None:intergenic |
AGAACAGTAAGAACTTCAGG+CGG | 0.731284 | 8.1:+7429928 | None:intergenic |
TAGTTGCTAATCTTACACCA+TGG | 0.738274 | 8.1:-7429333 | MS.gene68633:CDS |
CAAAACTCACATATTCAGGG+AGG | 0.739537 | 8.1:-7438625 | MS.gene68633:CDS |
GACTTCGTACTACAACCGTG+CGG | 0.836314 | 8.1:-7431500 | MS.gene68633:CDS |
ATGTGAAGTTCTGTACAGTG+GGG | 0.840739 | 8.1:-7421710 | MS.gene68633:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 7420751 | 7439159 | 7420751 | ID=MS.gene68633 |
chr8.1 | mRNA | 7420751 | 7439159 | 7420751 | ID=MS.gene68633.t1;Parent=MS.gene68633 |
chr8.1 | exon | 7438986 | 7439159 | 7438986 | ID=MS.gene68633.t1.exon1;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7438986 | 7439159 | 7438986 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7438764 | 7438838 | 7438764 | ID=MS.gene68633.t1.exon2;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7438764 | 7438838 | 7438764 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7438535 | 7438657 | 7438535 | ID=MS.gene68633.t1.exon3;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7438535 | 7438657 | 7438535 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7437070 | 7437146 | 7437070 | ID=MS.gene68633.t1.exon4;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7437070 | 7437146 | 7437070 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7436739 | 7436802 | 7436739 | ID=MS.gene68633.t1.exon5;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7436739 | 7436802 | 7436739 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7436469 | 7436539 | 7436469 | ID=MS.gene68633.t1.exon6;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7436469 | 7436539 | 7436469 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7435728 | 7435805 | 7435728 | ID=MS.gene68633.t1.exon7;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7435728 | 7435805 | 7435728 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7435558 | 7435603 | 7435558 | ID=MS.gene68633.t1.exon8;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7435558 | 7435603 | 7435558 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7435278 | 7435458 | 7435278 | ID=MS.gene68633.t1.exon9;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7435278 | 7435458 | 7435278 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7435150 | 7435202 | 7435150 | ID=MS.gene68633.t1.exon10;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7435150 | 7435202 | 7435150 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7434651 | 7434724 | 7434651 | ID=MS.gene68633.t1.exon11;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7434651 | 7434724 | 7434651 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7434366 | 7434483 | 7434366 | ID=MS.gene68633.t1.exon12;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7434366 | 7434483 | 7434366 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7433080 | 7433185 | 7433080 | ID=MS.gene68633.t1.exon13;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7433080 | 7433185 | 7433080 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7432769 | 7432884 | 7432769 | ID=MS.gene68633.t1.exon14;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7432769 | 7432884 | 7432769 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7431486 | 7431613 | 7431486 | ID=MS.gene68633.t1.exon15;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7431486 | 7431613 | 7431486 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7431306 | 7431385 | 7431306 | ID=MS.gene68633.t1.exon16;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7431306 | 7431385 | 7431306 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7429834 | 7430075 | 7429834 | ID=MS.gene68633.t1.exon17;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7429834 | 7430075 | 7429834 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7429584 | 7429748 | 7429584 | ID=MS.gene68633.t1.exon18;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7429584 | 7429748 | 7429584 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7429291 | 7429455 | 7429291 | ID=MS.gene68633.t1.exon19;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7429291 | 7429455 | 7429291 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7429134 | 7429208 | 7429134 | ID=MS.gene68633.t1.exon20;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7429134 | 7429208 | 7429134 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7428823 | 7428926 | 7428823 | ID=MS.gene68633.t1.exon21;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7428823 | 7428926 | 7428823 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7428670 | 7428745 | 7428670 | ID=MS.gene68633.t1.exon22;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7428670 | 7428745 | 7428670 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7427012 | 7427137 | 7427012 | ID=MS.gene68633.t1.exon23;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7427012 | 7427137 | 7427012 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7426800 | 7426934 | 7426800 | ID=MS.gene68633.t1.exon24;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7426800 | 7426934 | 7426800 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7424375 | 7424587 | 7424375 | ID=MS.gene68633.t1.exon25;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7424375 | 7424587 | 7424375 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7421624 | 7421863 | 7421624 | ID=MS.gene68633.t1.exon26;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7421624 | 7421863 | 7421624 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
chr8.1 | exon | 7420751 | 7421179 | 7420751 | ID=MS.gene68633.t1.exon27;Parent=MS.gene68633.t1 |
chr8.1 | CDS | 7420751 | 7421179 | 7420751 | ID=cds.MS.gene68633.t1;Parent=MS.gene68633.t1 |
Gene Sequence |
Protein sequence |