AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052454

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052454.t1 MTR_6g086635 94.787 633 32 1 1 632 1 633 0.0 1218
MS.gene052454.t1 MTR_8g103540 56.508 653 249 11 1 631 1 640 0.0 652
MS.gene052454.t1 MTR_2g102030 47.222 180 95 0 1 180 1 180 2.70e-51 183
MS.gene052454.t1 MTR_4g012540 54.422 147 66 1 28 174 1 146 9.60e-45 162
MS.gene052454.t1 MTR_8g074540 33.333 189 116 2 4 182 20 208 2.34e-29 121
MS.gene052454.t1 MTR_6g091690 32.418 182 113 2 5 176 1 182 1.34e-25 113
MS.gene052454.t1 MTR_4g038310 32.258 186 117 1 1 177 1 186 3.97e-24 106
MS.gene052454.t1 MTR_6g038150 30.208 192 124 2 1 182 3 194 7.03e-24 106
MS.gene052454.t1 MTR_1g110690 28.713 202 127 3 1 192 3 197 6.61e-23 100
MS.gene052454.t1 MTR_2g090230 32.500 160 99 2 14 164 3 162 6.70e-20 94.4
MS.gene052454.t1 MTR_7g407010 28.000 175 117 2 4 169 2 176 2.82e-18 88.2
MS.gene052454.t1 MTR_8g074540 30.827 133 83 1 59 182 2 134 1.85e-17 84.7
MS.gene052454.t1 MTR_1g111210 28.729 181 114 4 2 169 5 183 2.41e-15 78.6
MS.gene052454.t1 MTR_6g091690 29.032 124 79 1 70 184 2 125 2.48e-13 73.9
MS.gene052454.t1 MTR_2g090230 32.759 116 69 2 58 164 7 122 9.85e-13 71.6
MS.gene052454.t1 MTR_4g081350 25.143 175 119 2 12 176 9 181 1.20e-12 70.5
MS.gene052454.t1 MTR_4g081350 25.143 175 119 2 12 176 9 181 1.25e-12 70.5
MS.gene052454.t1 MTR_7g098540 25.904 166 118 1 12 172 19 184 1.09e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052454.t1 AT4G32350 59.459 185 75 0 1 185 1 185 2.97e-71 244
MS.gene052454.t1 AT4G32350 33.333 306 160 9 330 631 466 731 7.43e-30 125
MS.gene052454.t1 AT4G32350 59.459 185 75 0 1 185 1 185 2.97e-71 244
MS.gene052454.t1 AT4G32350 33.333 306 160 9 330 631 466 731 7.43e-30 125
MS.gene052454.t1 AT1G79910 54.444 180 82 0 1 180 1 180 4.70e-62 211
MS.gene052454.t1 AT1G52315 42.458 179 98 2 10 185 10 186 3.09e-37 142
MS.gene052454.t1 AT1G79910 52.459 122 58 0 59 180 4 125 1.02e-35 137
MS.gene052454.t1 AT1G79910 52.066 121 58 0 60 180 46 166 1.38e-34 135
MS.gene052454.t1 AT4G35730 34.921 189 113 2 4 182 20 208 1.05e-30 126
MS.gene052454.t1 AT4G32350 53.608 97 45 0 89 185 1 97 3.90e-30 126
MS.gene052454.t1 AT4G32350 33.333 306 160 9 330 631 378 643 1.27e-29 124
MS.gene052454.t1 AT1G25420 32.642 193 120 2 1 183 3 195 1.25e-27 114
MS.gene052454.t1 AT1G34220 32.642 193 120 2 1 183 3 195 1.28e-26 115
MS.gene052454.t1 AT1G52315 39.669 121 68 2 68 185 18 136 2.11e-22 98.6
MS.gene052454.t1 AT1G25420 30.952 168 107 1 25 183 1 168 6.54e-22 97.1
MS.gene052454.t1 AT1G34220 28.700 223 119 3 1 183 3 225 8.57e-22 100
MS.gene052454.t1 AT2G19710 25.275 182 126 2 5 176 4 185 3.38e-20 95.9
MS.gene052454.t1 AT2G14830 32.086 187 116 2 1 177 1 186 4.81e-19 90.1
MS.gene052454.t1 AT4G29440 24.176 182 128 2 5 176 4 185 5.44e-18 89.0
MS.gene052454.t1 AT1G25420 31.496 127 78 1 66 183 1 127 3.79e-17 82.0
MS.gene052454.t1 AT1G25420 31.496 127 78 1 66 183 1 127 3.79e-17 82.0
MS.gene052454.t1 AT1G13340 28.090 178 118 2 2 169 5 182 3.34e-16 81.6
MS.gene052454.t1 AT4G29440 23.490 149 105 1 37 176 9 157 8.23e-13 72.4

Find 138 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCTCAGTTCAAAATCTT+TGG 0.187180 6.1:+75430363 None:intergenic
CGACCTTCGGCAAATATTTC+AGG 0.230293 6.1:-75430613 MS.gene052454:CDS
AGCTTCAGCATCTTCTTTAT+TGG 0.239165 6.1:+75429207 None:intergenic
GGATTGGATGTTAATGCTTA+TGG 0.259710 6.1:-75432987 MS.gene052454:CDS
GAGAAAGAATCCCCTGTTCT+TGG 0.262807 6.1:-75429310 MS.gene052454:CDS
AAATCTAAGCTCCCTGAAAA+AGG 0.293667 6.1:-75429952 MS.gene052454:CDS
TGCTTTCTCAGGCACATTGA+TGG 0.308029 6.1:+75429048 None:intergenic
ACCATATCTGGTGTCTTATC+AGG 0.313507 6.1:+75428980 None:intergenic
CTTCTCAGAAAGGTGTCTAT+TGG 0.334001 6.1:-75429846 MS.gene052454:CDS
AGCAGCTAAATCATCATAAT+CGG 0.338559 6.1:+75428823 None:intergenic
CATCGTCAAACAAAATTTGT+AGG 0.342651 6.1:+75429140 None:intergenic
GTAAATCACCATCGTCAAAT+TGG 0.342652 6.1:+75429764 None:intergenic
GACCTTCTTCTTGCTTTCTC+AGG 0.347634 6.1:+75429037 None:intergenic
CTAACGGTGGGCACAAATAT+CGG 0.349940 6.1:-75430026 MS.gene052454:CDS
TTCCTAGCAGTGGCAGTGTC+CGG 0.359272 6.1:+75429703 None:intergenic
TAATTCTGAACATGATTTGC+AGG 0.366825 6.1:-75429368 MS.gene052454:CDS
GGTGCACGAGGGACCATATC+TGG 0.373763 6.1:+75428968 None:intergenic
TCTCTGGCCTCTCCAAGAAC+AGG 0.393346 6.1:+75429298 None:intergenic
ACTTCATCATACCTAGTGAT+TGG 0.394060 6.1:+75429922 None:intergenic
CTGTAGTACGGCTTTACCTT+AGG 0.394422 6.1:+75429562 None:intergenic
GTCGTGGATTCGCCGCGAAA+TGG 0.396749 6.1:-75433547 MS.gene052454:intron
ATCTCAGACTTGCCTTGTAA+TGG 0.403884 6.1:+75430075 None:intergenic
CTCGTCTTGAGTTTAGAATT+AGG 0.406118 6.1:+75429511 None:intergenic
TTCTCAGGCACATTGATGGT+TGG 0.412764 6.1:+75429052 None:intergenic
CTCTGAGAGTTATCAAGATC+AGG 0.413449 6.1:+75429607 None:intergenic
AGAGAAAATCCGATCAGGTT+TGG 0.415957 6.1:-75429392 MS.gene052454:CDS
TCCTAGCAGTGGCAGTGTCC+GGG 0.416483 6.1:+75429704 None:intergenic
TGATGTATTGAAGGATTTGT+TGG 0.419272 6.1:+75429439 None:intergenic
ATAGCTTCCCTGCATTCCTC+AGG 0.419858 6.1:+75430687 None:intergenic
AAGTCGTCATGCACATCAAA+TGG 0.425691 6.1:-75429011 MS.gene052454:CDS
ATCATCATAATCGGGTAAGT+TGG 0.426333 6.1:+75428832 None:intergenic
TCATCATAATCGGGTAAGTT+GGG 0.434205 6.1:+75428833 None:intergenic
TACCAGAGTTACGCGACCTT+CGG 0.439317 6.1:-75430626 MS.gene052454:CDS
ACTATGCTTGACGGCTTACT+CGG 0.452205 6.1:-75433569 MS.gene052454:CDS
ATGGTGATTTACATGATAGA+AGG 0.454702 6.1:-75429753 MS.gene052454:CDS
CCACCATGATTAACAGCAAA+TGG 0.456593 6.1:+75429634 None:intergenic
TGCCGAAGGTCGCGTAACTC+TGG 0.462005 6.1:+75430624 None:intergenic
ATTTGTGCCCACCGTTAGAA+TGG 0.465435 6.1:+75430031 None:intergenic
CTCTCAGAGAAAAGTTCAAA+AGG 0.466399 6.1:-75429593 MS.gene052454:CDS
GATGTATTGAAGGATTTGTT+GGG 0.468522 6.1:+75429440 None:intergenic
GTGGATGCCCTGAGGAATGC+AGG 0.469109 6.1:-75430695 MS.gene052454:CDS
TCTCCCTTATGTTCCTCTCA+AGG 0.471480 6.1:+75428790 None:intergenic
ATTGGTGATCTGTTGGTGAA+TGG 0.476009 6.1:-75433008 MS.gene052454:CDS
ACCAATTGGATGTTCTTCTC+AGG 0.479571 6.1:-75429800 MS.gene052454:CDS
TGCCCACCGTTAGAATGGTC+AGG 0.479577 6.1:+75430036 None:intergenic
CGATCTTCAACTATGCTTGA+CGG 0.482981 6.1:-75433578 None:intergenic
TTACCTTGGAGCAGAAGGTT+CGG 0.485215 6.1:-75430429 MS.gene052454:CDS
CATAAATCTGACCATTCAGT+TGG 0.486560 6.1:-75430102 MS.gene052454:CDS
TCTGTAGTAGAAGCAGCGTC+AGG 0.488188 6.1:+75429412 None:intergenic
TGATTAAGTTGACGAAGAAT+CGG 0.489278 6.1:-75433085 MS.gene052454:CDS
ACCTGATAAGACACCAGATA+TGG 0.491819 6.1:-75428981 MS.gene052454:CDS
GCGGCCTTGAGAGGAACATA+AGG 0.494047 6.1:-75428794 None:intergenic
TGATCTGTTGGTGAATGGAT+TGG 0.495157 6.1:-75433003 MS.gene052454:CDS
GTAATGGTTTCCCAACTGAA+TGG 0.496753 6.1:+75430091 None:intergenic
GTTGATGCAAGAGATTTCTT+CGG 0.497967 6.1:-75430407 MS.gene052454:CDS
AGTATGCTAAAACCACCAAT+TGG 0.501031 6.1:-75429814 MS.gene052454:CDS
GAACCATTTGCTGTTAATCA+TGG 0.501739 6.1:-75429637 MS.gene052454:CDS
GTAAGTTGGGATGCACATGC+CGG 0.504587 6.1:+75428846 None:intergenic
TCCTGAGAAGAACATCCAAT+TGG 0.510314 6.1:+75429799 None:intergenic
TCTTCACATATTGACAATGA+TGG 0.515554 6.1:-75429466 MS.gene052454:CDS
TAAGTTGGGATGCACATGCC+GGG 0.518395 6.1:+75428847 None:intergenic
GATTGAAATCCTGCATGACT+CGG 0.522678 6.1:+75429676 None:intergenic
TGTCCGGGGTTTCTCTCACA+CGG 0.524180 6.1:+75429719 None:intergenic
TGAGAAGAACATCCAATTGG+TGG 0.524489 6.1:+75429802 None:intergenic
CATGCACATCAAATGGATGA+TGG 0.527228 6.1:-75429004 MS.gene052454:CDS
GAAGAGCTTACTTCTCAGAA+AGG 0.527409 6.1:-75429856 MS.gene052454:CDS
GCAGCTAAATCATCATAATC+GGG 0.528846 6.1:+75428824 None:intergenic
GCTAGGCTTGCGGCCTTGAG+AGG 0.528998 6.1:-75428803 MS.gene052454:CDS
ACTACAGAGAAAATCCGATC+AGG 0.529429 6.1:-75429397 MS.gene052454:CDS
CAAATATTTCAGGAGAGATA+CGG 0.534258 6.1:-75430603 MS.gene052454:CDS
CTGAAGCTGCGAGAAAATCA+AGG 0.534261 6.1:-75429192 MS.gene052454:CDS
AGGAAGTCTCCGAGTCATGC+AGG 0.534848 6.1:-75429685 MS.gene052454:CDS
ATCTCTTGTGATTGTTCGTG+AGG 0.537452 6.1:+75428929 None:intergenic
TGGATGTTAATGCTTATGGA+AGG 0.538899 6.1:-75432983 MS.gene052454:CDS
CAGAATTATCCAAACCTGAT+CGG 0.539142 6.1:+75429383 None:intergenic
TGCTCCAAGGTAAAAGACTT+CGG 0.539298 6.1:+75430439 None:intergenic
CGGCCTTGAGAGGAACATAA+GGG 0.541190 6.1:-75428793 None:intergenic
AGAATCGGATCGATGTGATA+AGG 0.542820 6.1:-75433070 MS.gene052454:CDS
GTCCGGGGTTTCTCTCACAC+GGG 0.543703 6.1:+75429720 None:intergenic
TGGTGATTTACATGATAGAA+GGG 0.549826 6.1:-75429752 MS.gene052454:CDS
TCGATGTGATAAGGAGGAAG+AGG 0.553696 6.1:-75433061 MS.gene052454:CDS
TCACGAACAATCACAAGAGA+TGG 0.557525 6.1:-75428927 MS.gene052454:CDS
ATAAATCTGACCATTCAGTT+GGG 0.559105 6.1:-75430101 MS.gene052454:CDS
GGGATGGCATTACTGTAGTA+CGG 0.562596 6.1:+75429550 None:intergenic
CTTGACGGCTTACTCGGTCG+TGG 0.565345 6.1:-75433563 MS.gene052454:CDS
TCAAAAGGATGAAACTCCTA+AGG 0.565572 6.1:-75429578 MS.gene052454:CDS
CCTAGCAGTGGCAGTGTCCG+GGG 0.566606 6.1:+75429705 None:intergenic
CACCCGTGTGAGAGAAACCC+CGG 0.569000 6.1:-75429722 MS.gene052454:CDS
ATTATGATGATTTAGCTGCT+AGG 0.570267 6.1:-75428820 MS.gene052454:CDS
CTCTGGCCTCTCCAAGAACA+GGG 0.570679 6.1:+75429299 None:intergenic
TTCCTAGCAACGGATTGCCA+TGG 0.571107 6.1:+75429881 None:intergenic
TGCCTGAGAAAGCAAGAAGA+AGG 0.573909 6.1:-75429039 MS.gene052454:CDS
TGATTTAGCTGCTAGGCTTG+CGG 0.576201 6.1:-75428813 MS.gene052454:CDS
GGCGCAGGCACTCGAAATCA+CGG 0.578205 6.1:-75429246 MS.gene052454:CDS
CAGATAGATCAAAAGAAGCC+CGG 0.578269 6.1:-75428865 MS.gene052454:CDS
GATGTCAAAATCCTCTGCTA+AGG 0.585023 6.1:-75430344 MS.gene052454:intron
GGATTGCCATGGCTATCCCT+TGG 0.591113 6.1:+75429892 None:intergenic
CAACCGAACCTTCTGCTCCA+AGG 0.593201 6.1:+75430426 None:intergenic
TCAGAAAGGTGTCTATTGGA+AGG 0.593385 6.1:-75429842 MS.gene052454:CDS
TAGCTTCCCTGCATTCCTCA+GGG 0.593501 6.1:+75430688 None:intergenic
AAAGGTGTCTATTGGAAGGA+GGG 0.594393 6.1:-75429838 MS.gene052454:CDS
TCAGTTGGGAAACCATTACA+AGG 0.596326 6.1:-75430087 MS.gene052454:CDS
AGCCATGGCAATCCGTTGCT+AGG 0.597124 6.1:-75429883 MS.gene052454:CDS
CCCCGGACACTGCCACTGCT+AGG 0.597507 6.1:-75429705 MS.gene052454:CDS
ACAAGATGTCAATGTTAACT+CGG 0.603860 6.1:+75431974 None:intergenic
GAACGATATTGGTGATCTGT+TGG 0.606795 6.1:-75433015 MS.gene052454:CDS
GGATGTTAATGCTTATGGAA+GGG 0.608856 6.1:-75432982 MS.gene052454:intron
AAGGATTCAAGCCAATCACT+AGG 0.610407 6.1:-75429933 MS.gene052454:CDS
TGGATGCCCTGAGGAATGCA+GGG 0.611806 6.1:-75430694 MS.gene052454:CDS
GTGCTTCAACACAAAATCAC+AGG 0.613053 6.1:+75431932 None:intergenic
GAAAGGTGTCTATTGGAAGG+AGG 0.613520 6.1:-75429839 MS.gene052454:CDS
AGAATGTTATGTCAATCAAG+AGG 0.615113 6.1:-75430571 MS.gene052454:intron
TCTCCTGAAATATTTGCCGA+AGG 0.621342 6.1:+75430610 None:intergenic
GTCCTGACCATTCTAACGGT+GGG 0.623146 6.1:-75430038 MS.gene052454:CDS
GAAACTGATCGAGGTGCACG+AGG 0.623244 6.1:+75428956 None:intergenic
AAAAGTCCTGACCATTCTAA+CGG 0.623323 6.1:-75430042 MS.gene052454:CDS
GCACAAATATCGGAATGGTA+AGG 0.624321 6.1:-75430016 MS.gene052454:CDS
GTGATTTACATGATAGAAGG+GGG 0.626943 6.1:-75429750 MS.gene052454:CDS
CGGGGTTTCTCTCACACGGG+TGG 0.633535 6.1:+75429723 None:intergenic
ATCGGATCGATGTGATAAGG+AGG 0.633916 6.1:-75433067 MS.gene052454:CDS
GGTGGGCACAAATATCGGAA+TGG 0.637524 6.1:-75430021 MS.gene052454:CDS
AGAATCCCCTGTTCTTGGAG+AGG 0.640686 6.1:-75429305 MS.gene052454:CDS
GGTGATTTACATGATAGAAG+GGG 0.642871 6.1:-75429751 MS.gene052454:CDS
TCAGTTTCTGTAGCACTGAG+AGG 0.643895 6.1:+75431910 None:intergenic
ACTCAGTCGAGCATGTCTAG+TGG 0.647004 6.1:+75429345 None:intergenic
ATGATGAAGTCAATCTACCA+AGG 0.648498 6.1:-75429909 MS.gene052454:CDS
AGTCCTGACCATTCTAACGG+TGG 0.653470 6.1:-75430039 MS.gene052454:CDS
CCATTTGCTGTTAATCATGG+TGG 0.653627 6.1:-75429634 MS.gene052454:CDS
TGATGAAGTCAATCTACCAA+GGG 0.661992 6.1:-75429908 MS.gene052454:CDS
ACTCGGAGACTTCCTAGCAG+TGG 0.663654 6.1:+75429693 None:intergenic
AATCTACCAAGGGATAGCCA+TGG 0.679655 6.1:-75429898 MS.gene052454:CDS
TGAGGACAACACCTTAGCAG+AGG 0.682039 6.1:+75430333 None:intergenic
TCTCAGTGCTACAGAAACTG+AGG 0.697538 6.1:-75431908 MS.gene052454:intron
CGAGTGCACCAATTTGACGA+TGG 0.698820 6.1:-75429772 MS.gene052454:CDS
TCTGGCCTCTCCAAGAACAG+GGG 0.703078 6.1:+75429300 None:intergenic
TGAGGAAGAGAAACTGATCG+AGG 0.716604 6.1:+75428947 None:intergenic
AAACTGATCGAGGTGCACGA+GGG 0.725458 6.1:+75428957 None:intergenic
AGACGAGACGAATCAAAACG+TGG 0.739618 6.1:-75429163 MS.gene052454:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTAAAAAGTAAATGAAA+TGG + chr6.1:75430737-75430756 None:intergenic 15.0%
!! AGATTATGAATATTTCAAAT+TGG - chr6.1:75429911-75429930 MS.gene052454:CDS 15.0%
!! ATAGAAATTTAAAAGTCATA+TGG - chr6.1:75430633-75430652 MS.gene052454:CDS 15.0%
!! ATTATAAGAATAATGATTGA+TGG - chr6.1:75431175-75431194 MS.gene052454:intron 15.0%
!! CTGTATTAAATAAAATCAAA+TGG - chr6.1:75430897-75430916 MS.gene052454:intron 15.0%
!! TATGTATAATTGTAATGATA+TGG + chr6.1:75431839-75431858 None:intergenic 15.0%
!! TTGAAATATTCATAATCTTA+GGG + chr6.1:75429909-75429928 None:intergenic 15.0%
!! TTTAGTTAAAGAATATACAA+TGG - chr6.1:75429719-75429738 MS.gene052454:CDS 15.0%
!! TTTCATAATTAGAAATAGAA+TGG - chr6.1:75429793-75429812 MS.gene052454:CDS 15.0%
!!! AAAATTATTCATTTTGTAGT+TGG - chr6.1:75431394-75431413 MS.gene052454:intron 15.0%
!!! ACTATTTTCTTAATTTAACT+TGG - chr6.1:75430323-75430342 MS.gene052454:intron 15.0%
!!! CATTTGATTTTATTTAATAC+AGG + chr6.1:75430899-75430918 None:intergenic 15.0%
!!! GAAGATTTTTGTTTTAATAT+AGG + chr6.1:75433094-75433113 None:intergenic 15.0%
!!! TGTTAATGTGTTTTTTTTTT+TGG - chr6.1:75429237-75429256 MS.gene052454:CDS 15.0%
!!! TTTGAAATATTCATAATCTT+AGG + chr6.1:75429910-75429929 None:intergenic 15.0%
!!! TTTTAAATTTCTATAAGAGA+TGG + chr6.1:75430627-75430646 None:intergenic 15.0%
!! AAAACTAATAGAACAATGTA+AGG + chr6.1:75432056-75432075 None:intergenic 20.0%
!! AATCAATCATGTAAATAATG+AGG + chr6.1:75432127-75432146 None:intergenic 20.0%
!! AATGTAAGCATATGTTAAAA+TGG + chr6.1:75432184-75432203 None:intergenic 20.0%
!! AGATTATGACTATTTCAAAA+GGG + chr6.1:75430122-75430141 None:intergenic 20.0%
!! ATAGTAAGTGGTTAATTATA+GGG + chr6.1:75429967-75429986 None:intergenic 20.0%
!! ATCAATCATGTAAATAATGA+GGG + chr6.1:75432126-75432145 None:intergenic 20.0%
!! ATTAATCTAAACAAAACAGT+GGG + chr6.1:75429848-75429867 None:intergenic 20.0%
!! ATTGAAATGTAGTTATGATT+CGG - chr6.1:75428921-75428940 MS.gene052454:CDS 20.0%
!! GTTTCTAATTAGAAATAGAA+TGG - chr6.1:75429619-75429638 MS.gene052454:CDS 20.0%
!! TAGACTCTATCTAATTATAA+CGG - chr6.1:75431146-75431165 MS.gene052454:intron 20.0%
!! TAGTAAGTTGTTAAACTATA+AGG + chr6.1:75429999-75430018 None:intergenic 20.0%
!! TATGAAATTGTTGCAATTTA+TGG - chr6.1:75429457-75429476 MS.gene052454:CDS 20.0%
!! TATTAAAACAAAAATCTTCG+AGG - chr6.1:75433095-75433114 MS.gene052454:CDS 20.0%
!! TCATAAATAGTGATTTAGAA+TGG + chr6.1:75430778-75430797 None:intergenic 20.0%
!! TTAACAACTTACTATTAATG+TGG - chr6.1:75430005-75430024 MS.gene052454:CDS 20.0%
!!! AATGGATTATGAATATGTTT+TGG - chr6.1:75429574-75429593 MS.gene052454:CDS 20.0%
!!! ACTTGTGAGAATTTTAAATT+TGG - chr6.1:75430277-75430296 MS.gene052454:intron 20.0%
!!! CAAATGTATTTTATTGGTAT+TGG + chr6.1:75432219-75432238 None:intergenic 20.0%
!!! CTTTTGTTATTTATTCATGT+TGG - chr6.1:75430924-75430943 MS.gene052454:intron 20.0%
!!! GAGGTATAAATCTATTTTAA+TGG - chr6.1:75430473-75430492 MS.gene052454:intron 20.0%
!!! GTAACTTTTTTTATTTCTCA+GGG - chr6.1:75430515-75430534 MS.gene052454:intron 20.0%
!!! TAACTTTTTTTATTTCTCAG+GGG - chr6.1:75430516-75430535 MS.gene052454:intron 20.0%
!!! TAGTCTTTTGTTTAATGTAT+TGG - chr6.1:75430193-75430212 MS.gene052454:intron 20.0%
!!! TGTAACTTTTTTTATTTCTC+AGG - chr6.1:75430514-75430533 MS.gene052454:intron 20.0%
!!! TGTTTTAATATCTTTTACAG+TGG - chr6.1:75431648-75431667 MS.gene052454:intron 20.0%
!!! TTAGAATTAGGTTTTACATA+AGG + chr6.1:75432842-75432861 None:intergenic 20.0%
!!! TTTTAATATAGGAAATTCTC+TGG + chr6.1:75433083-75433102 None:intergenic 20.0%
! AAAAAAATTGAACCATTTCG+CGG + chr6.1:75428830-75428849 None:intergenic 25.0%
! AATCCTTCTTAGATTATGTT+AGG + chr6.1:75430071-75430090 None:intergenic 25.0%
! AGAAATAGAATGGAATTTGA+GGG - chr6.1:75429629-75429648 MS.gene052454:CDS 25.0%
! AGTTATGTGAGACTATTATA+TGG - chr6.1:75429484-75429503 MS.gene052454:CDS 25.0%
! ATAAAAAAGACGAAGAAGAA+AGG - chr6.1:75433251-75433270 MS.gene052454:intron 25.0%
! ATCAGTATGTGGTTAAATAT+AGG + chr6.1:75430033-75430052 None:intergenic 25.0%
! ATCCTTCTTAGATTATGTTA+GGG + chr6.1:75430070-75430089 None:intergenic 25.0%
! ATGTAAATAATGAGGGAAAA+CGG + chr6.1:75432119-75432138 None:intergenic 25.0%
! ATTAGAAAACCACCAAAAAA+AGG + chr6.1:75430670-75430689 None:intergenic 25.0%
! ATTCTATTAAACTGTCAAGT+TGG - chr6.1:75429940-75429959 MS.gene052454:CDS 25.0%
! CAAATAGGCTTTCTTATAAT+TGG - chr6.1:75431083-75431102 MS.gene052454:intron 25.0%
! GAGATTATGACTATTTCAAA+AGG + chr6.1:75430123-75430142 None:intergenic 25.0%
! GATAGTAAGTGGTTAATTAT+AGG + chr6.1:75429968-75429987 None:intergenic 25.0%
! GATTAATCTAAACAAAACAG+TGG + chr6.1:75429849-75429868 None:intergenic 25.0%
! TAAAAAAGACGAAGAAGAAA+GGG - chr6.1:75433252-75433271 MS.gene052454:intron 25.0%
! TAGAAATAGAATGGAATTTG+AGG - chr6.1:75429628-75429647 MS.gene052454:CDS 25.0%
! TCAGTATGTGGTTAAATATA+GGG + chr6.1:75430032-75430051 None:intergenic 25.0%
! TTAACCACTTACTATCAATT+AGG - chr6.1:75429972-75429991 MS.gene052454:CDS 25.0%
! TTGTTAATGTAGTTATGATG+AGG - chr6.1:75429082-75429101 MS.gene052454:CDS 25.0%
! TTTAATACAGGAAAGTAAAG+TGG + chr6.1:75430887-75430906 None:intergenic 25.0%
! TTTCTTCTTCATTTGAATCA+TGG - chr6.1:75430543-75430562 MS.gene052454:intron 25.0%
!! AAATTGATAGTATCAGTATG+TGG + chr6.1:75430044-75430063 None:intergenic 25.0%
!! ACTTGATTTTGTTGAATTTG+TGG - chr6.1:75429411-75429430 MS.gene052454:CDS 25.0%
!! ATTTGAGACTTTGTTTGATT+TGG - chr6.1:75429769-75429788 MS.gene052454:CDS 25.0%
!! CACAAGCAAATGTATTTTAT+TGG + chr6.1:75432225-75432244 None:intergenic 25.0%
!!! AAGTTTTTGAAGAACGATAT+TGG - chr6.1:75429336-75429355 MS.gene052454:CDS 25.0%
!!! ACTGTTTTGATGTCATATAA+TGG - chr6.1:75431268-75431287 MS.gene052454:intron 25.0%
!!! TTGTCTTATTTATTTTGAGC+TGG - chr6.1:75431446-75431465 MS.gene052454:intron 25.0%
AAAATACATTTGCTTGTGCA+GGG - chr6.1:75432227-75432246 MS.gene052454:intron 30.0%
AAAATCAGGGACTAATTTAG+TGG + chr6.1:75429871-75429890 None:intergenic 30.0%
AACGGTAACTATACAAGAAT+TGG + chr6.1:75432101-75432120 None:intergenic 30.0%
AATTGGAATTTCAACTCTCA+AGG - chr6.1:75431100-75431119 MS.gene052454:intron 30.0%
ACAAGATGTCAATGTTAACT+CGG + chr6.1:75430391-75430410 None:intergenic 30.0%
ACGGTAACTATACAAGAATT+GGG + chr6.1:75432100-75432119 None:intergenic 30.0%
AGAATGTTATGTCAATCAAG+AGG - chr6.1:75431791-75431810 MS.gene052454:intron 30.0%
AGCAGCTAAATCATCATAAT+CGG + chr6.1:75433542-75433561 None:intergenic 30.0%
AGTAAAATTTGACAGAGTCA+GGG - chr6.1:75430095-75430114 MS.gene052454:CDS 30.0%
AGTTCAGAAATGTGAAAGAA+AGG - chr6.1:75431209-75431228 MS.gene052454:intron 30.0%
ATAAATCTGACCATTCAGTT+GGG - chr6.1:75432261-75432280 MS.gene052454:intron 30.0%
ATCAATCAAATTCAAGACCA+AGG + chr6.1:75429530-75429549 None:intergenic 30.0%
ATGGAACACTAAATTCACAT+AGG + chr6.1:75430718-75430737 None:intergenic 30.0%
ATGGTGATTTACATGATAGA+AGG - chr6.1:75432609-75432628 MS.gene052454:intron 30.0%
ATTATGATGATTTAGCTGCT+AGG - chr6.1:75433542-75433561 MS.gene052454:intron 30.0%
CAAATATTTCAGGAGAGATA+CGG - chr6.1:75431759-75431778 MS.gene052454:intron 30.0%
CATCGTCAAACAAAATTTGT+AGG + chr6.1:75433225-75433244 None:intergenic 30.0%
CGATTTACTTCAAAATTCGA+AGG + chr6.1:75429131-75429150 None:intergenic 30.0%
TAAAATACATTTGCTTGTGC+AGG - chr6.1:75432226-75432245 MS.gene052454:intron 30.0%
TAAAATTCTCACAAGTCCTA+AGG + chr6.1:75430273-75430292 None:intergenic 30.0%
TAAATTCACATAGGAAGACA+AGG + chr6.1:75430709-75430728 None:intergenic 30.0%
TCGATAATTCTTGATACGAA+TGG - chr6.1:75431502-75431521 MS.gene052454:intron 30.0%
TCTTCACATATTGACAATGA+TGG - chr6.1:75432896-75432915 MS.gene052454:intron 30.0%
TGATGTATTGAAGGATTTGT+TGG + chr6.1:75432926-75432945 None:intergenic 30.0%
TGGTGATTTACATGATAGAA+GGG - chr6.1:75432610-75432629 MS.gene052454:intron 30.0%
! AATGGTTATGCTTTAGATGT+GGG - chr6.1:75430491-75430510 MS.gene052454:intron 30.0%
! ACCTACGGAATGAATAATTT+TGG + chr6.1:75431236-75431255 None:intergenic 30.0%
! ATCGAGAATATAGAGTGTTA+GGG + chr6.1:75431487-75431506 None:intergenic 30.0%
! ATTGATGATACTGTTAGTCA+AGG - chr6.1:75429544-75429563 MS.gene052454:CDS 30.0%
! CCTACGGAATGAATAATTTT+GGG + chr6.1:75431235-75431254 None:intergenic 30.0%
! GAATTAGGTTTTACATAAGG+TGG + chr6.1:75432839-75432858 None:intergenic 30.0%
! GATGTATTGAAGGATTTGTT+GGG + chr6.1:75432925-75432944 None:intergenic 30.0%
! TAATGGTTATGCTTTAGATG+TGG - chr6.1:75430490-75430509 MS.gene052454:intron 30.0%
! TAATTCTGAACATGATTTGC+AGG - chr6.1:75432994-75433013 MS.gene052454:CDS 30.0%
! TATCGAGAATATAGAGTGTT+AGG + chr6.1:75431488-75431507 None:intergenic 30.0%
! TGTAGTTATGATGAGGTTTT+AGG - chr6.1:75429089-75429108 MS.gene052454:CDS 30.0%
! TTCGGAGTTTTCAATAAAGT+GGG - chr6.1:75431973-75431992 MS.gene052454:CDS 30.0%
!! CTTGTTATGATTTTGTTGAG+TGG - chr6.1:75430406-75430425 MS.gene052454:CDS 30.0%
!! TATTCATGAGATGGTTTTAC+AGG - chr6.1:75430350-75430369 MS.gene052454:CDS 30.0%
!! TGATTAAGTTGACGAAGAAT+CGG - chr6.1:75429277-75429296 MS.gene052454:CDS 30.0%
!! TTAGTAACATTTTAGTGTGC+TGG - chr6.1:75430812-75430831 MS.gene052454:intron 30.0%
!!! AGTAAGTTTTGTTCTACCTA+CGG + chr6.1:75431251-75431270 None:intergenic 30.0%
!!! TCTGAATGTTGATGATGTTT+TGG - chr6.1:75429744-75429763 MS.gene052454:CDS 30.0%
AAAAGTCCTGACCATTCTAA+CGG - chr6.1:75432320-75432339 MS.gene052454:intron 35.0%
AAACCACCAAAAAAAGGAAG+TGG + chr6.1:75430664-75430683 None:intergenic 35.0%
AAATCTAAGCTCCCTGAAAA+AGG - chr6.1:75432410-75432429 MS.gene052454:intron 35.0%
AATAGAACAATGTAAGGCTG+AGG + chr6.1:75432050-75432069 None:intergenic 35.0%
ACTTCATCATACCTAGTGAT+TGG + chr6.1:75432443-75432462 None:intergenic 35.0%
AGCTTCAGCATCTTCTTTAT+TGG + chr6.1:75433158-75433177 None:intergenic 35.0%
AGTATGCTAAAACCACCAAT+TGG - chr6.1:75432548-75432567 MS.gene052454:intron 35.0%
ATCATCATAATCGGGTAAGT+TGG + chr6.1:75433533-75433552 None:intergenic 35.0%
ATGATGAAGTCAATCTACCA+AGG - chr6.1:75432453-75432472 MS.gene052454:intron 35.0%
ATTCTTGATACGAATGGAAC+AGG - chr6.1:75431508-75431527 MS.gene052454:intron 35.0%
ATTGATACAATCAACATGCC+AGG - chr6.1:75430572-75430591 MS.gene052454:CDS 35.0%
CAGAATTATCCAAACCTGAT+CGG + chr6.1:75432982-75433001 None:intergenic 35.0%
CAGCATTTCACATGAACTAT+TGG + chr6.1:75431548-75431567 None:intergenic 35.0%
CATAAATCTGACCATTCAGT+TGG - chr6.1:75432260-75432279 MS.gene052454:intron 35.0%
CATCCTCAGTTCAAAATCTT+TGG + chr6.1:75432002-75432021 None:intergenic 35.0%
CCCAAAATTATTCATTCCGT+AGG - chr6.1:75431232-75431251 MS.gene052454:intron 35.0%
CGATTGATATAGTTATGCCT+TGG - chr6.1:75429510-75429529 MS.gene052454:CDS 35.0%
CTATGCGTTGTACAAAATCA+GGG + chr6.1:75429884-75429903 None:intergenic 35.0%
CTCTCAGAGAAAAGTTCAAA+AGG - chr6.1:75432769-75432788 MS.gene052454:intron 35.0%
CTTGGATCATATTCATGAGA+TGG - chr6.1:75430341-75430360 MS.gene052454:intron 35.0%
GAATCGATAATAGAGACCTT+AGG - chr6.1:75430254-75430273 MS.gene052454:intron 35.0%
GAGTAAAATTTGACAGAGTC+AGG - chr6.1:75430094-75430113 MS.gene052454:CDS 35.0%
GCAATTTAATCAGTCAGTTC+AGG + chr6.1:75431875-75431894 None:intergenic 35.0%
GCAGCTAAATCATCATAATC+GGG + chr6.1:75433541-75433560 None:intergenic 35.0%
GCATACAACTTTGAGCAAAT+AGG - chr6.1:75431068-75431087 MS.gene052454:intron 35.0%
GGATGTTAATGCTTATGGAA+GGG - chr6.1:75429380-75429399 MS.gene052454:CDS 35.0%
GGATTGGATGTTAATGCTTA+TGG - chr6.1:75429375-75429394 MS.gene052454:CDS 35.0%
GGTGATTTACATGATAGAAG+GGG - chr6.1:75432611-75432630 MS.gene052454:intron 35.0%
GTAAATCACCATCGTCAAAT+TGG + chr6.1:75432601-75432620 None:intergenic 35.0%
GTCCCTAACATAATCTAAGA+AGG - chr6.1:75430065-75430084 MS.gene052454:CDS 35.0%
GTGATTTACATGATAGAAGG+GGG - chr6.1:75432612-75432631 MS.gene052454:intron 35.0%
GTTAGTCAAGGAATGTAGAA+TGG - chr6.1:75429556-75429575 MS.gene052454:CDS 35.0%
GTTGATGCAAGAGATTTCTT+CGG - chr6.1:75431955-75431974 MS.gene052454:CDS 35.0%
TCATCATAATCGGGTAAGTT+GGG + chr6.1:75433532-75433551 None:intergenic 35.0%
TCTATACAGTATATGAAGCC+TGG + chr6.1:75430593-75430612 None:intergenic 35.0%
TGATGAAGTCAATCTACCAA+GGG - chr6.1:75432454-75432473 MS.gene052454:intron 35.0%
TGGATGTTAATGCTTATGGA+AGG - chr6.1:75429379-75429398 MS.gene052454:CDS 35.0%
TGTTAAAATGGTTTCCCGAA+AGG + chr6.1:75432172-75432191 None:intergenic 35.0%
TTCTTGATACGAATGGAACA+GGG - chr6.1:75431509-75431528 MS.gene052454:intron 35.0%
! ACTCCAAAGATTTTGAACTG+AGG - chr6.1:75431996-75432015 MS.gene052454:intron 35.0%
! AGGACCTAATTGATAGTAAG+TGG + chr6.1:75429979-75429998 None:intergenic 35.0%
! CATGATTGATTTAGTCATCG+AGG - chr6.1:75432136-75432155 MS.gene052454:intron 35.0%
! CTCGTCTTGAGTTTAGAATT+AGG + chr6.1:75432854-75432873 None:intergenic 35.0%
! CTTCGGAGTTTTCAATAAAG+TGG - chr6.1:75431972-75431991 MS.gene052454:CDS 35.0%
! GGTCAGATTTATGAGTTTTG+TGG + chr6.1:75432253-75432272 None:intergenic 35.0%
! TAGGTTTTACATAAGGTGGT+GGG + chr6.1:75432835-75432854 None:intergenic 35.0%
! TCAGGCTTTTGATGTATTGA+AGG + chr6.1:75432935-75432954 None:intergenic 35.0%
! TTAGGTTTTACATAAGGTGG+TGG + chr6.1:75432836-75432855 None:intergenic 35.0%
!! GAACCATTTGCTGTTAATCA+TGG - chr6.1:75432725-75432744 MS.gene052454:intron 35.0%
!! TTGGCTTGAATCCTTTTTCA+GGG + chr6.1:75432424-75432443 None:intergenic 35.0%
!! TTTTCAGGGAGCTTAGATTT+GGG + chr6.1:75432410-75432429 None:intergenic 35.0%
!!! ATTGGCTTGAATCCTTTTTC+AGG + chr6.1:75432425-75432444 None:intergenic 35.0%
!!! CGAGGTTTTTGTTTTCCTTT+CGG - chr6.1:75432154-75432173 MS.gene052454:intron 35.0%
!!! GAGGTTTTTGTTTTCCTTTC+GGG - chr6.1:75432155-75432174 MS.gene052454:intron 35.0%
!!! GTCTAACCACTTCCTTTTTT+TGG - chr6.1:75430655-75430674 MS.gene052454:CDS 35.0%
!!! TAACCACTTCCTTTTTTTGG+TGG - chr6.1:75430658-75430677 MS.gene052454:CDS 35.0%
!!! TGGTTGGCTTTTTGCTATAA+TGG + chr6.1:75433297-75433316 None:intergenic 35.0%
!!! TTTTTCAGGGAGCTTAGATT+TGG + chr6.1:75432411-75432430 None:intergenic 35.0%
AAATCCGTCCATGACTTTGT+AGG + chr6.1:75430166-75430185 None:intergenic 40.0%
AAGGATTCAAGCCAATCACT+AGG - chr6.1:75432429-75432448 MS.gene052454:intron 40.0%
AAGTCGTCATGCACATCAAA+TGG - chr6.1:75433351-75433370 MS.gene052454:intron 40.0%
AATCCGTCCATGACTTTGTA+GGG + chr6.1:75430165-75430184 None:intergenic 40.0%
ACCAATTGGATGTTCTTCTC+AGG - chr6.1:75432562-75432581 MS.gene052454:intron 40.0%
ACCATATCTGGTGTCTTATC+AGG + chr6.1:75433385-75433404 None:intergenic 40.0%
ACCTGATAAGACACCAGATA+TGG - chr6.1:75433381-75433400 MS.gene052454:intron 40.0%
ACTACAGAGAAAATCCGATC+AGG - chr6.1:75432965-75432984 MS.gene052454:intron 40.0%
AGAATCGGATCGATGTGATA+AGG - chr6.1:75429292-75429311 MS.gene052454:CDS 40.0%
AGAGAAAATCCGATCAGGTT+TGG - chr6.1:75432970-75432989 MS.gene052454:intron 40.0%
ATCTCAGACTTGCCTTGTAA+TGG + chr6.1:75432290-75432309 None:intergenic 40.0%
ATCTCTTGTGATTGTTCGTG+AGG + chr6.1:75433436-75433455 None:intergenic 40.0%
CAGATAGATCAAAAGAAGCC+CGG - chr6.1:75433497-75433516 MS.gene052454:intron 40.0%
CATGCACATCAAATGGATGA+TGG - chr6.1:75433358-75433377 MS.gene052454:intron 40.0%
CCACCATGATTAACAGCAAA+TGG + chr6.1:75432731-75432750 None:intergenic 40.0%
CCTATGCGTTGTACAAAATC+AGG + chr6.1:75429885-75429904 None:intergenic 40.0%
GAAGAGCTTACTTCTCAGAA+AGG - chr6.1:75432506-75432525 MS.gene052454:intron 40.0%
GATGTCAAAATCCTCTGCTA+AGG - chr6.1:75432018-75432037 MS.gene052454:intron 40.0%
GATTGAAATCCTGCATGACT+CGG + chr6.1:75432689-75432708 None:intergenic 40.0%
GCACAAATATCGGAATGGTA+AGG - chr6.1:75432346-75432365 MS.gene052454:intron 40.0%
GTAATGGTTTCCCAACTGAA+TGG + chr6.1:75432274-75432293 None:intergenic 40.0%
GTGCTTCAACACAAAATCAC+AGG + chr6.1:75430433-75430452 None:intergenic 40.0%
TCACGAACAATCACAAGAGA+TGG - chr6.1:75433435-75433454 MS.gene052454:intron 40.0%
TCAGTTGGGAAACCATTACA+AGG - chr6.1:75432275-75432294 MS.gene052454:intron 40.0%
TCCTGAGAAGAACATCCAAT+TGG + chr6.1:75432566-75432585 None:intergenic 40.0%
TCTCCTGAAATATTTGCCGA+AGG + chr6.1:75431755-75431774 None:intergenic 40.0%
TCTTGATACGAATGGAACAG+GGG - chr6.1:75431510-75431529 MS.gene052454:intron 40.0%
TGAGAAGAACATCCAATTGG+TGG + chr6.1:75432563-75432582 None:intergenic 40.0%
TGCAATATGTATGAAGACCC+CGG + chr6.1:75431038-75431057 None:intergenic 40.0%
TGCTCCAAGGTAAAAGACTT+CGG + chr6.1:75431926-75431945 None:intergenic 40.0%
TTTCCAGCTGAATATAGCTC+CGG - chr6.1:75431016-75431035 MS.gene052454:intron 40.0%
! AGCTCTTCTTTTCCTAGCAA+CGG + chr6.1:75432494-75432513 None:intergenic 40.0%
! ATTGGTGATCTGTTGGTGAA+TGG - chr6.1:75429354-75429373 MS.gene052454:CDS 40.0%
! CCTGATTTTGTACAACGCAT+AGG - chr6.1:75429882-75429901 MS.gene052454:CDS 40.0%
! CTCTGAGAGTTATCAAGATC+AGG + chr6.1:75432758-75432777 None:intergenic 40.0%
! GAACGATATTGGTGATCTGT+TGG - chr6.1:75429347-75429366 MS.gene052454:CDS 40.0%
! GAATCCGAAGTCTTTTACCT+TGG - chr6.1:75431919-75431938 MS.gene052454:CDS 40.0%
! TACAAAGTCATGGACGGATT+TGG - chr6.1:75430165-75430184 MS.gene052454:intron 40.0%
! TGATCTGTTGGTGAATGGAT+TGG - chr6.1:75429359-75429378 MS.gene052454:CDS 40.0%
! TTTGTAGGGTGCTCTCAAAT+AGG + chr6.1:75430151-75430170 None:intergenic 40.0%
!! AAAGGTGTCTATTGGAAGGA+GGG - chr6.1:75432524-75432543 MS.gene052454:intron 40.0%
!! CCATTTGCTGTTAATCATGG+TGG - chr6.1:75432728-75432747 MS.gene052454:intron 40.0%
!! CTTCTCAGAAAGGTGTCTAT+TGG - chr6.1:75432516-75432535 MS.gene052454:intron 40.0%
!! TCAGAAAGGTGTCTATTGGA+AGG - chr6.1:75432520-75432539 MS.gene052454:intron 40.0%
!!! TTTTACATAAGGTGGTGGGA+TGG + chr6.1:75432831-75432850 None:intergenic 40.0%
AACAAAAATCTTCGAGGCGC+AGG - chr6.1:75433101-75433120 MS.gene052454:intron 45.0%
AATCTACCAAGGGATAGCCA+TGG - chr6.1:75432464-75432483 MS.gene052454:intron 45.0%
AGACGAGACGAATCAAAACG+TGG - chr6.1:75433199-75433218 MS.gene052454:intron 45.0%
ATCGGATCGATGTGATAAGG+AGG - chr6.1:75429295-75429314 MS.gene052454:CDS 45.0%
ATTTGTGCCCACCGTTAGAA+TGG + chr6.1:75432334-75432353 None:intergenic 45.0%
CAGGAAAGTAAAGTGGCAAC+AGG + chr6.1:75430880-75430899 None:intergenic 45.0%
CGACCTTCGGCAAATATTTC+AGG - chr6.1:75431749-75431768 MS.gene052454:intron 45.0%
CTAACGGTGGGCACAAATAT+CGG - chr6.1:75432336-75432355 MS.gene052454:intron 45.0%
CTGAAGCTGCGAGAAAATCA+AGG - chr6.1:75433170-75433189 MS.gene052454:intron 45.0%
CTGTAGTACGGCTTTACCTT+AGG + chr6.1:75432803-75432822 None:intergenic 45.0%
CTTGATACGAATGGAACAGG+GGG - chr6.1:75431511-75431530 MS.gene052454:intron 45.0%
GACCTTCTTCTTGCTTTCTC+AGG + chr6.1:75433328-75433347 None:intergenic 45.0%
GAGAAAGAATCCCCTGTTCT+TGG - chr6.1:75433052-75433071 MS.gene052454:CDS 45.0%
GGAAGACAAGGAGAAAAGTC+AGG + chr6.1:75430697-75430716 None:intergenic 45.0%
GGGATGGCATTACTGTAGTA+CGG + chr6.1:75432815-75432834 None:intergenic 45.0%
TCGATGTGATAAGGAGGAAG+AGG - chr6.1:75429301-75429320 MS.gene052454:CDS 45.0%
TCTCAGTGCTACAGAAACTG+AGG - chr6.1:75430454-75430473 MS.gene052454:CDS 45.0%
TGAGCTGGTCATCTGAGTAT+TGG - chr6.1:75431461-75431480 MS.gene052454:intron 45.0%
TGAGGAAGAGAAACTGATCG+AGG + chr6.1:75433418-75433437 None:intergenic 45.0%
TGATTTAGCTGCTAGGCTTG+CGG - chr6.1:75433549-75433568 MS.gene052454:CDS 45.0%
TGCCTGAGAAAGCAAGAAGA+AGG - chr6.1:75433323-75433342 MS.gene052454:intron 45.0%
TGCTTTCTCAGGCACATTGA+TGG + chr6.1:75433317-75433336 None:intergenic 45.0%
TTACCTTGGAGCAGAAGGTT+CGG - chr6.1:75431933-75431952 MS.gene052454:CDS 45.0%
TTCCAGCTGAATATAGCTCC+GGG - chr6.1:75431017-75431036 MS.gene052454:intron 45.0%
! CGGGCTTCTTTTGATCTATC+TGG + chr6.1:75433499-75433518 None:intergenic 45.0%
! GTCTTTTACCTTGGAGCAGA+AGG - chr6.1:75431928-75431947 MS.gene052454:CDS 45.0%
! TCAGTTTCTGTAGCACTGAG+AGG + chr6.1:75430455-75430474 None:intergenic 45.0%
! TTCTCAGGCACATTGATGGT+TGG + chr6.1:75433313-75433332 None:intergenic 45.0%
!! GAAAGGTGTCTATTGGAAGG+AGG - chr6.1:75432523-75432542 MS.gene052454:intron 45.0%
!! GAGATGGTTTTACAGGCTGA+AGG - chr6.1:75430357-75430376 MS.gene052454:CDS 45.0%
AAACTGATCGAGGTGCACGA+GGG + chr6.1:75433408-75433427 None:intergenic 50.0%
ACTCAGTCGAGCATGTCTAG+TGG + chr6.1:75433020-75433039 None:intergenic 50.0%
AGAATCCCCTGTTCTTGGAG+AGG - chr6.1:75433057-75433076 MS.gene052454:CDS 50.0%
AGTCCTGACCATTCTAACGG+TGG - chr6.1:75432323-75432342 MS.gene052454:intron 50.0%
ATAGCTTCCCTGCATTCCTC+AGG + chr6.1:75431678-75431697 None:intergenic 50.0%
CGAGTGCACCAATTTGACGA+TGG - chr6.1:75432590-75432609 MS.gene052454:intron 50.0%
GCACCCTACAAAGTCATGGA+CGG - chr6.1:75430159-75430178 MS.gene052454:intron 50.0%
GGTGGGCACAAATATCGGAA+TGG - chr6.1:75432341-75432360 MS.gene052454:intron 50.0%
GTCCTGACCATTCTAACGGT+GGG - chr6.1:75432324-75432343 MS.gene052454:intron 50.0%
TACCAGAGTTACGCGACCTT+CGG - chr6.1:75431736-75431755 MS.gene052454:intron 50.0%
TAGCTTCCCTGCATTCCTCA+GGG + chr6.1:75431677-75431696 None:intergenic 50.0%
TCCAGCTGAATATAGCTCCG+GGG - chr6.1:75431018-75431037 MS.gene052454:intron 50.0%
TCTGTAGTAGAAGCAGCGTC+AGG + chr6.1:75432953-75432972 None:intergenic 50.0%
TGAGGACAACACCTTAGCAG+AGG + chr6.1:75432032-75432051 None:intergenic 50.0%
! CTTTTACAGTGGATGCCCTG+AGG - chr6.1:75431659-75431678 MS.gene052454:intron 50.0%
! GTAAGTTGGGATGCACATGC+CGG + chr6.1:75433519-75433538 None:intergenic 50.0%
! TAAGTTGGGATGCACATGCC+GGG + chr6.1:75433518-75433537 None:intergenic 50.0%
!! GAGAGCACCCTACAAAGTCA+TGG - chr6.1:75430155-75430174 MS.gene052454:intron 50.0%
!! TTCCTAGCAACGGATTGCCA+TGG + chr6.1:75432484-75432503 None:intergenic 50.0%
ACCCCGGAGCTATATTCAGC+TGG + chr6.1:75431022-75431041 None:intergenic 55.0%
ACTCGGAGACTTCCTAGCAG+TGG + chr6.1:75432672-75432691 None:intergenic 55.0%
AGCCATGGCAATCCGTTGCT+AGG - chr6.1:75432479-75432498 MS.gene052454:intron 55.0%
AGGAAGTCTCCGAGTCATGC+AGG - chr6.1:75432677-75432696 MS.gene052454:intron 55.0%
CAACCGAACCTTCTGCTCCA+AGG + chr6.1:75431939-75431958 None:intergenic 55.0%
CTCTGGCCTCTCCAAGAACA+GGG + chr6.1:75433066-75433085 None:intergenic 55.0%
GAAACTGATCGAGGTGCACG+AGG + chr6.1:75433409-75433428 None:intergenic 55.0%
GGATTGCCATGGCTATCCCT+TGG + chr6.1:75432473-75432492 None:intergenic 55.0%
TCTCTGGCCTCTCCAAGAAC+AGG + chr6.1:75433067-75433086 None:intergenic 55.0%
TCTGGCCTCTCCAAGAACAG+GGG + chr6.1:75433065-75433084 None:intergenic 55.0%
TGCCCACCGTTAGAATGGTC+AGG + chr6.1:75432329-75432348 None:intergenic 55.0%
TGGATGCCCTGAGGAATGCA+GGG - chr6.1:75431668-75431687 MS.gene052454:intron 55.0%
TGTCCGGGGTTTCTCTCACA+CGG + chr6.1:75432646-75432665 None:intergenic 55.0%
TTCCTAGCAGTGGCAGTGTC+CGG + chr6.1:75432662-75432681 None:intergenic 55.0%
CACCCGTGTGAGAGAAACCC+CGG - chr6.1:75432640-75432659 MS.gene052454:intron 60.0%
CTTGACGGCTTACTCGGTCG+TGG - chr6.1:75428799-75428818 MS.gene052454:CDS 60.0%
GGCGCAGGCACTCGAAATCA+CGG - chr6.1:75433116-75433135 MS.gene052454:intron 60.0%
GGTGCACGAGGGACCATATC+TGG + chr6.1:75433397-75433416 None:intergenic 60.0%
GTCCGGGGTTTCTCTCACAC+GGG + chr6.1:75432645-75432664 None:intergenic 60.0%
GTCGTGGATTCGCCGCGAAA+TGG - chr6.1:75428815-75428834 MS.gene052454:CDS 60.0%
GTGGATGCCCTGAGGAATGC+AGG - chr6.1:75431667-75431686 MS.gene052454:intron 60.0%
TCCTAGCAGTGGCAGTGTCC+GGG + chr6.1:75432661-75432680 None:intergenic 60.0%
TGCCGAAGGTCGCGTAACTC+TGG + chr6.1:75431741-75431760 None:intergenic 60.0%
CCTAGCAGTGGCAGTGTCCG+GGG + chr6.1:75432660-75432679 None:intergenic 65.0%
CGGGGTTTCTCTCACACGGG+TGG + chr6.1:75432642-75432661 None:intergenic 65.0%
GCTAGGCTTGCGGCCTTGAG+AGG - chr6.1:75433559-75433578 MS.gene052454:CDS 65.0%
CCCCGGACACTGCCACTGCT+AGG - chr6.1:75432657-75432676 MS.gene052454:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 75428796 75433588 75428796 ID=MS.gene052454
chr6.1 mRNA 75428796 75433588 75428796 ID=MS.gene052454.t1;Parent=MS.gene052454
chr6.1 exon 75433548 75433588 75433548 ID=MS.gene052454.t1.exon1;Parent=MS.gene052454.t1
chr6.1 CDS 75433548 75433588 75433548 ID=cds.MS.gene052454.t1;Parent=MS.gene052454.t1
chr6.1 exon 75432983 75433115 75432983 ID=MS.gene052454.t1.exon2;Parent=MS.gene052454.t1
chr6.1 CDS 75432983 75433115 75432983 ID=cds.MS.gene052454.t1;Parent=MS.gene052454.t1
chr6.1 exon 75431909 75432012 75431909 ID=MS.gene052454.t1.exon3;Parent=MS.gene052454.t1
chr6.1 CDS 75431909 75432012 75431909 ID=cds.MS.gene052454.t1;Parent=MS.gene052454.t1
chr6.1 exon 75430572 75430716 75430572 ID=MS.gene052454.t1.exon4;Parent=MS.gene052454.t1
chr6.1 CDS 75430572 75430716 75430572 ID=cds.MS.gene052454.t1;Parent=MS.gene052454.t1
chr6.1 exon 75430345 75430479 75430345 ID=MS.gene052454.t1.exon5;Parent=MS.gene052454.t1
chr6.1 CDS 75430345 75430479 75430345 ID=cds.MS.gene052454.t1;Parent=MS.gene052454.t1
chr6.1 exon 75428796 75430136 75428796 ID=MS.gene052454.t1.exon6;Parent=MS.gene052454.t1
chr6.1 CDS 75428796 75430136 75428796 ID=cds.MS.gene052454.t1;Parent=MS.gene052454.t1
Gene Sequence

>MS.gene052454

ATGCTTGACGGCTTACTCGGTCGTGGATTCGCCGCGAAATGGTTCAATTTTTTTTTTATTTCTAATTTTTTTTCATTTTTTTTTTGTGTATTTTGCATGTTTGATTTAGTTTCTGATGCAGAGATATTGAAATGTAGTTATGATTCGGTTTCAATTTTTTTGTTTTTTGTTCATTTTGAAGTAAATCGTTGAAAAAATTGACGAAGAATCGTTGATCAAGATTTTAATGATTTTTTTCTGTTTTGCATGCTTGATTTAGTTTCTGATTAAGAAAATTTGAATTAATTTGTTAATGTAGTTATGATGAGGTTTTAGGTTTTTTTTTTTTTTTTCCTTCGAATTTTGAAGTAAATCGATGAAGAATTGTTGATTAATATTTGAACGCTGTTTTGTGTTTTGCGTGCTTGATTTAGTTTCTGATTAAGAAAATTTGAATGAGTTTGTTAATGTGTTTTTTTTTTTGGATTTTGAAGTAAGTCGTTGATTAAGTTGACGAAGAATCGGATCGATGTGATAAGGAGGAAGAGGAAAGCGACAGAGAAGTTTTTGAAGAACGATATTGGTGATCTGTTGGTGAATGGATTGGATGTTAATGCTTATGGAAGGGTAATTGCTACTTGATTTTGTTGAATTTGTGGATTTATTTGTTTGAGATTTTTATTATGAAATTGTTGCAATTTATGGATTTAGTTATGTGAGACTATTATATGGAATCGATTGATATAGTTATGCCTTGGTCTTGAATTTGATTGATGATACTGTTAGTCAAGGAATGTAGAATGGATTATGAATATGTTTTGGCGATTCGAGACGTGTTTTATTCGTTTCTAATTAGAAATAGAATGGAATTTGAGGGAGATGAGATTTATTCTTTCACTATAGTTTTTCTGACTTGCTGAGTTTTGTTCTTGCTTGATTCTACTTTTAGTTAAAGAATATACAATGGATTCTGAATGTTGATGATGTTTTGGCGATTTGAGACTTTGTTTGATTTGGTTTTCATAATTAGAAATAGAATGGAATTTGAGTGAGATGAGATTTGTTTTTTTCCCACTGTTTTGTTTAGATTAATCCACTAAATTAGTCCCTGATTTTGTACAACGCATAGGTCCCTAAGATTATGAATATTTCAAATTGGTCTCTGATTCTATTAAACTGTCAAGTTGGTCCCTATAATTAACCACTTACTATCAATTAGGTCCTTATAGTTTAACAACTTACTATTAATGTGGTCCCTATATTTAACCACATACTGATACTATCAATTTAGTCCCTAACATAATCTAAGAAGGATTAATGAGTAAAATTTGACAGAGTCAGGGACCCTTTTGAAATAGTCATAATCTCAGTGACCTATTTGAGAGCACCCTACAAAGTCATGGACGGATTTGGTAGTTTAGTCTTTTGTTTAATGTATTGGATATATGAATATCTTATCTACAGTGATTTTTCATTTTTGAATCGATAATAGAGACCTTAGGACTTGTGAGAATTTTAAATTTGGTTAGATTATTGTGTTTGCAACACACTATTTTCTTAATTTAACTTGGATCATATTCATGAGATGGTTTTACAGGCTGAAGGACTCATTGCCGAGTTAACATTGACATCTTGTTATGATTTTGTTGAGTGGACCTGTGATTTTGTGTTGAAGCACCTCTCAGTGCTACAGAAACTGAGGTATAAATCTATTTTAATGGTTATGCTTTAGATGTGGGTGTAACTTTTTTTATTTCTCAGGGGTGTTTTTCTTCTTCATTTGAATCATGGCTGATAATTGATACAATCAACATGCCAGGCTTCATATACTGTATAGAAGTATGAAAAACCATCTCTTATAGAAATTTAAAAGTCATATGGTCTAACCACTTCCTTTTTTTGGTGGTTTTCTAATTGAACCTGACTTTTCTCCTTGTCTTCCTATGTGAATTTAGTGTTCCATTTCATTTACTTTTTAGTTTTTGTTATCAAATAACTTGCCATTCTAAATCACTATTTATGATTTCAAAATACACATTAGTAACATTTTAGTGTGCTGGATAATATAAAAGCATGCTTTCTTAATAAATCTTTCACTTTATCCTGTTGCCACTTTACTTTCCTGTATTAAATAAAATCAAATGGATCTCTTTTGTTATTTATTCATGTTGGTTGAAAACAAATTTAATATTCATCAGTACTGCATCATAAGTATATGTGTGCGTGTACAGATATTACATGTTTCCAGCTGAATATAGCTCCGGGGTCTTCATACATATTGCAGTGCACTTCTGCATACAACTTTGAGCAAATAGGCTTTCTTATAATTGGAATTTCAACTCTCAAGGTTGCACAATTGAAATTATGCACGTAGACTCTATCTAATTATAACGGATGAAAATTATAAGAATAATGATTGATGGCATACATGTAAAGTTCAGAAATGTGAAAGAAAGGCCCAAAATTATTCATTCCGTAGGTAGAACAAAACTTACTGTTTTGATGTCATATAATGGCATACACATATACTTATTAAAATAATGATGTATGACATACATGTGAAGCACAGAAATGTGTAAAAGTGACAAAAAAGTTGTTTTTCTTAACAAAAGAGTGACAAAAATTATTCATTTTGTAGTTGGTATAAATTTTACTGTTGCAATATTATTATTTGTCTTATTTATTTTGAGCTGGTCATCTGAGTATTGGCCCTAACACTCTATATTCTCGATAATTCTTGATACGAATGGAACAGGGGGAGTGTCATTATCCAATAGTTCATGTGAAATGCTGTTGTTGACTTTCTTTTGCATGCTGATGTGCATTTTTGACACATGTAGTGTCTAAATATCACTTAATTGATGTAATTAAGTTGTTTTAATATCTTTTACAGTGGATGCCCTGAGGAATGCAGGGAAGCTATAGCGTGTCTGATTATTGCTGCAGCAAGATTTTCTGATCTACCAGAGTTACGCGACCTTCGGCAAATATTTCAGGAGAGATACGGAAACTCTCTAGAATGTTATGTCAATCAAGAGGTCACTCTCAATTTTTTTTCTTTCCATATCATTACAATTATACATATTTACGACTTATTCCTGAACTGACTGATTAAATTGCTACTTATCAGTTTGCTGCAAATTTGAATCCGAAGTCTTTTACCTTGGAGCAGAAGGTTCGGTTGATGCAAGAGATTTCTTCGGAGTTTTCAATAAAGTGGGACTCCAAAGATTTTGAACTGAGGATGTCAAAATCCTCTGCTAAGGTGTTGTCCTCAGCCTTACATTGTTCTATTAGTTTTGTTTGTTAAATTTAAAAATTTCCCAATTCTTGTATAGTTACCGTTTTCCCTCATTATTTACATGATTGATTTAGTCATCGAGGTTTTTGTTTTCCTTTCGGGAAACCATTTTAACATATGCTTACATTTTTGTGTATATGCCAATACCAATAAAATACATTTGCTTGTGCAGGGCCACAAAACTCATAAATCTGACCATTCAGTTGGGAAACCATTACAAGGCAAGTCTGAGATTTTGTTAGATAAAAGTCCTGACCATTCTAACGGTGGGCACAAATATCGGAATGGTAAGGAAGCTGCTGTCTCAAAAGCAGATGAAAATTATCTTCATCCCAAATCTAAGCTCCCTGAAAAAGGATTCAAGCCAATCACTAGGTATGATGAAGTCAATCTACCAAGGGATAGCCATGGCAATCCGTTGCTAGGAAAAGAAGAGCTTACTTCTCAGAAAGGTGTCTATTGGAAGGAGGGTAGTATGCTAAAACCACCAATTGGATGTTCTTCTCAGGATAAGCGAGTGCACCAATTTGACGATGGTGATTTACATGATAGAAGGGGGAATGCCACCCGTGTGAGAGAAACCCCGGACACTGCCACTGCTAGGAAGTCTCCGAGTCATGCAGGATTTCAATCAAAGAACAATTTGAATGAACCATTTGCTGTTAATCATGGTGGACTACCTGATCTTGATAACTCTCAGAGAAAAGTTCAAAAGGATGAAACTCCTAAGGTAAAGCCGTACTACAGTAATGCCATCCCACCACCTTATGTAAAACCTAATTCTAAACTCAAGACGAGCACACAAAGAACTGAATTAGCATCTTCACATATTGACAATGATGGCATCCCAACAAATCCTTCAATACATCAAAAGCCTGACGCTGCTTCTACTACAGAGAAAATCCGATCAGGTTTGGATAATTCTGAACATGATTTGCAGGCCACTAGACATGCTCGACTGAGTAAACATGATTATGAGAAAGAATCCCCTGTTCTTGGAGAGGCCAGAGAATTTCCTATATTAAAACAAAAATCTTCGAGGCGCAGGCACTCGAAATCACGGTCTACACACAATGATGCCAATAAAGAAGATGCTGAAGCTGCGAGAAAATCAAGGAGCAAGAGACGAGACGAATCAAAACGTGGCCTACAAATTTTGTTTGACGATGAGAAACATAAAAAAGACGAAGAAGAAAGGGTTATAGATAGATTGCTGATCCATTATAGCAAAAAGCCAACCATCAATGTGCCTGAGAAAGCAAGAAGAAGGTCTAAAAGTCGTCATGCACATCAAATGGATGATGGACCTGATAAGACACCAGATATGGTCCCTCGTGCACCTCGATCAGTTTCTCTTCCTCACGAACAATCACAAGAGATGGAAGTCAACAAAGTGTTTACTCGAGCTGCTTCGTTTCAGCCAGATAGATCAAAAGAAGCCCGGCATGTGCATCCCAACTTACCCGATTATGATGATTTAGCTGCTAGGCTTGCGGCCTTGAGAGGAACATAA
Protein sequence

>MS.gene052454.t1

MLDGLLGRGFAAKCKSLIKLTKNRIDVIRRKRKATEKFLKNDIGDLLVNGLDVNAYGRAEGLIAELTLTSCYDFVEWTCDFVLKHLSVLQKLSGCPEECREAIACLIIAAARFSDLPELRDLRQIFQERYGNSLECYVNQEFAANLNPKSFTLEQKVRLMQEISSEFSIKWDSKDFELRMSKSSAKGHKTHKSDHSVGKPLQGKSEILLDKSPDHSNGGHKYRNGKEAAVSKADENYLHPKSKLPEKGFKPITRYDEVNLPRDSHGNPLLGKEELTSQKGVYWKEGSMLKPPIGCSSQDKRVHQFDDGDLHDRRGNATRVRETPDTATARKSPSHAGFQSKNNLNEPFAVNHGGLPDLDNSQRKVQKDETPKVKPYYSNAIPPPYVKPNSKLKTSTQRTELASSHIDNDGIPTNPSIHQKPDAASTTEKIRSGLDNSEHDLQATRHARLSKHDYEKESPVLGEAREFPILKQKSSRRRHSKSRSTHNDANKEDAEAARKSRSKRRDESKRGLQILFDDEKHKKDEEERVIDRLLIHYSKKPTINVPEKARRRSKSRHAHQMDDGPDKTPDMVPRAPRSVSLPHEQSQEMEVNKVFTRAASFQPDRSKEARHVHPNLPDYDDLAARLAALRGT