AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61400.t1 MTR_6g086635 94.945 633 31 1 1 632 1 633 0.0 1221
MS.gene61400.t1 MTR_8g103540 56.355 653 250 11 1 631 1 640 0.0 650
MS.gene61400.t1 MTR_2g102030 47.222 180 95 0 1 180 1 180 2.99e-51 183
MS.gene61400.t1 MTR_4g012540 54.422 147 66 1 28 174 1 146 1.06e-44 162
MS.gene61400.t1 MTR_8g074540 33.333 189 116 2 4 182 20 208 2.26e-29 121
MS.gene61400.t1 MTR_6g091690 32.418 182 113 2 5 176 1 182 1.16e-25 113
MS.gene61400.t1 MTR_4g038310 32.258 186 117 1 1 177 1 186 3.79e-24 106
MS.gene61400.t1 MTR_6g038150 30.208 192 124 2 1 182 3 194 6.67e-24 106
MS.gene61400.t1 MTR_1g110690 29.189 185 121 2 1 175 3 187 8.28e-23 100
MS.gene61400.t1 MTR_2g090230 32.500 160 99 2 14 164 3 162 6.30e-20 94.4
MS.gene61400.t1 MTR_7g407010 28.000 175 117 2 4 169 2 176 2.25e-18 88.6
MS.gene61400.t1 MTR_8g074540 30.827 133 83 1 59 182 2 134 1.96e-17 84.7
MS.gene61400.t1 MTR_1g111210 28.729 181 114 4 2 169 5 183 2.50e-15 78.6
MS.gene61400.t1 MTR_6g091690 29.310 116 73 1 70 176 2 117 2.42e-13 73.9
MS.gene61400.t1 MTR_2g090230 32.759 116 69 2 58 164 7 122 9.52e-13 71.6
MS.gene61400.t1 MTR_4g081350 25.143 175 119 2 12 176 9 181 1.19e-12 70.5
MS.gene61400.t1 MTR_4g081350 25.143 175 119 2 12 176 9 181 1.20e-12 70.5
MS.gene61400.t1 MTR_7g098540 25.904 166 118 1 12 172 19 184 1.09e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61400.t1 AT4G32350 59.459 185 75 0 1 185 1 185 3.46e-71 244
MS.gene61400.t1 AT4G32350 33.333 306 160 9 330 631 466 731 5.84e-30 126
MS.gene61400.t1 AT4G32350 59.459 185 75 0 1 185 1 185 3.46e-71 244
MS.gene61400.t1 AT4G32350 33.333 306 160 9 330 631 466 731 5.84e-30 126
MS.gene61400.t1 AT1G79910 54.444 180 82 0 1 180 1 180 4.60e-62 211
MS.gene61400.t1 AT1G52315 42.458 179 98 2 10 185 10 186 3.15e-37 142
MS.gene61400.t1 AT1G79910 52.459 122 58 0 59 180 4 125 1.06e-35 137
MS.gene61400.t1 AT1G79910 52.066 121 58 0 60 180 46 166 1.49e-34 135
MS.gene61400.t1 AT4G35730 34.921 189 113 2 4 182 20 208 9.46e-31 126
MS.gene61400.t1 AT4G32350 53.608 97 45 0 89 185 1 97 3.86e-30 126
MS.gene61400.t1 AT4G32350 33.333 306 160 9 330 631 378 643 9.21e-30 125
MS.gene61400.t1 AT1G25420 32.642 193 120 2 1 183 3 195 1.05e-27 114
MS.gene61400.t1 AT1G34220 32.642 193 120 2 1 183 3 195 1.20e-26 115
MS.gene61400.t1 AT1G52315 39.669 121 68 2 68 185 18 136 2.03e-22 98.6
MS.gene61400.t1 AT1G25420 30.952 168 107 1 25 183 1 168 6.24e-22 97.1
MS.gene61400.t1 AT1G34220 28.700 223 119 3 1 183 3 225 8.95e-22 100
MS.gene61400.t1 AT2G19710 25.275 182 126 2 5 176 4 185 3.04e-20 96.3
MS.gene61400.t1 AT2G14830 32.086 187 116 2 1 177 1 186 4.94e-19 90.1
MS.gene61400.t1 AT4G29440 24.176 182 128 2 5 176 4 185 5.08e-18 89.0
MS.gene61400.t1 AT1G25420 31.496 127 78 1 66 183 1 127 3.76e-17 82.0
MS.gene61400.t1 AT1G25420 31.496 127 78 1 66 183 1 127 3.76e-17 82.0
MS.gene61400.t1 AT1G13340 28.090 178 118 2 2 169 5 182 3.25e-16 81.6
MS.gene61400.t1 AT4G29440 23.490 149 105 1 37 176 9 157 8.30e-13 72.4

Find 138 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCTCAGTTCAAAATCTT+TGG 0.187180 6.3:+79980938 None:intergenic
CGACCTTCGGCAAATATTTC+AGG 0.230293 6.3:-79981188 MS.gene61400:CDS
AGCTTCAGCATCTTCTTTAT+TGG 0.239165 6.3:+79979781 None:intergenic
GGATTGGATGTTAATGCTTA+TGG 0.259710 6.3:-79983562 MS.gene61400:CDS
GAGAAAGAATCCCCTGTTCT+TGG 0.262807 6.3:-79979884 MS.gene61400:CDS
AAATCTAAGCTCCCTGAAAA+AGG 0.293667 6.3:-79980526 MS.gene61400:CDS
TGCTTTCTCAGGCACATTGA+TGG 0.308029 6.3:+79979622 None:intergenic
ACCATATCTGGTGTCTTATC+AGG 0.313507 6.3:+79979554 None:intergenic
CTTCTCAGAAAGATGTCTAT+TGG 0.325247 6.3:-79980420 MS.gene61400:CDS
AGCAGCTAAATCATCATAAT+CGG 0.338559 6.3:+79979397 None:intergenic
CATCGTCAAACAAAATTTGT+AGG 0.342651 6.3:+79979714 None:intergenic
GTAAATCACCATCGTCAAAT+TGG 0.342652 6.3:+79980338 None:intergenic
GACCTTCTTCTTGCTTTCTC+AGG 0.347634 6.3:+79979611 None:intergenic
CTAACGGTGGGCACAAATAT+CGG 0.349940 6.3:-79980600 MS.gene61400:CDS
TTCCTAGCAGTGGCAGTGTC+CGG 0.359272 6.3:+79980277 None:intergenic
TAATTCTGAACATGATTTGC+AGG 0.366825 6.3:-79979942 MS.gene61400:CDS
GGTGCACGAGGGACCATATC+TGG 0.373763 6.3:+79979542 None:intergenic
TCTCTGGCCTCTCCAAGAAC+AGG 0.393346 6.3:+79979872 None:intergenic
ACTTCATCATACCTAGTGAT+TGG 0.394060 6.3:+79980496 None:intergenic
CTGTAGTACGGCTTTACCTT+AGG 0.394422 6.3:+79980136 None:intergenic
ATCTCAGACTTGCCTTGTAA+TGG 0.403884 6.3:+79980649 None:intergenic
CTCGTCTTGAGTTTAGAATT+AGG 0.406118 6.3:+79980085 None:intergenic
TTCTCAGGCACATTGATGGT+TGG 0.412764 6.3:+79979626 None:intergenic
CTCTGAGAGTTATCAAGATC+AGG 0.413449 6.3:+79980181 None:intergenic
GTCGTGGATTCGCCGCCAAA+TGG 0.414381 6.3:-79984121 MS.gene61400:intron
AGAGAAAATCCGATCAGGTT+TGG 0.415957 6.3:-79979966 MS.gene61400:CDS
TCCTAGCAGTGGCAGTGTCC+GGG 0.416483 6.3:+79980278 None:intergenic
TGATGTATTGAAGGATTTGT+TGG 0.419272 6.3:+79980013 None:intergenic
ATAGCTTCCCTGCATTCCTC+AGG 0.419858 6.3:+79981262 None:intergenic
AAGTCGTCATGCACATCAAA+TGG 0.425691 6.3:-79979585 MS.gene61400:CDS
ATCATCATAATCGGGTAAGT+TGG 0.426333 6.3:+79979406 None:intergenic
TCATCATAATCGGGTAAGTT+GGG 0.434205 6.3:+79979407 None:intergenic
TACCAGAGTTACGCGACCTT+CGG 0.439317 6.3:-79981201 MS.gene61400:CDS
ACTATGCTTGACGGCTTACT+CGG 0.452205 6.3:-79984143 MS.gene61400:CDS
ATGGTGATTTACATGATAGA+AGG 0.454702 6.3:-79980327 MS.gene61400:CDS
CCACCATGATTAACAGCAAA+TGG 0.456593 6.3:+79980208 None:intergenic
TGCCGAAGGTCGCGTAACTC+TGG 0.462005 6.3:+79981199 None:intergenic
ATTTGTGCCCACCGTTAGAA+TGG 0.465435 6.3:+79980605 None:intergenic
CTCTCAGAGAAAAGTTCAAA+AGG 0.466399 6.3:-79980167 MS.gene61400:CDS
ACATGCTCGACTGAGTAAAC+AGG 0.468271 6.3:-79979912 MS.gene61400:CDS
GATGTATTGAAGGATTTGTT+GGG 0.468522 6.3:+79980014 None:intergenic
GTGGATGCCCTGAGGAATGC+AGG 0.469109 6.3:-79981270 MS.gene61400:CDS
TCTCCCTTATGTTCCTCTCA+AGG 0.471480 6.3:+79979364 None:intergenic
ATTGGTGATCTGTTGGTGAA+TGG 0.476009 6.3:-79983583 MS.gene61400:CDS
ACCAATTGGATGTTCTTCTC+AGG 0.479571 6.3:-79980374 MS.gene61400:CDS
TGCCCACCGTTAGAATGGTC+AGG 0.479577 6.3:+79980610 None:intergenic
CGATCTTCAACTATGCTTGA+CGG 0.482981 6.3:-79984152 None:intergenic
TTACCTTGGAGCAGAAGGTT+CGG 0.485215 6.3:-79981004 MS.gene61400:CDS
TCTGTAGTAGAAGCAGCGTC+AGG 0.488188 6.3:+79979986 None:intergenic
TGATTAAGTTGACGAAGAAT+CGG 0.489278 6.3:-79983660 MS.gene61400:CDS
ACCTGATAAGACACCAGATA+TGG 0.491819 6.3:-79979555 MS.gene61400:CDS
GCGGCCTTGAGAGGAACATA+AGG 0.494047 6.3:-79979368 None:intergenic
TGATCTGTTGGTGAATGGAT+TGG 0.495157 6.3:-79983578 MS.gene61400:CDS
CATAAATCTGACCATTCAGT+TGG 0.495618 6.3:-79980676 MS.gene61400:CDS
GTAATGGTTTCCCAACTGAA+TGG 0.496753 6.3:+79980665 None:intergenic
GTTGATGCAAGAGATTTCTT+CGG 0.497967 6.3:-79980982 MS.gene61400:CDS
TAAGTTGGGATGCACATGTC+GGG 0.499564 6.3:+79979421 None:intergenic
AGTATGCTAAAACCACCAAT+TGG 0.501031 6.3:-79980388 MS.gene61400:CDS
GAACCATTTGCTGTTAATCA+TGG 0.501739 6.3:-79980211 MS.gene61400:CDS
TCCTGAGAAGAACATCCAAT+TGG 0.510314 6.3:+79980373 None:intergenic
TCTTCACATATTGACAATGA+TGG 0.515554 6.3:-79980040 MS.gene61400:CDS
GATTGAAATCCTGCATGACT+CGG 0.522678 6.3:+79980250 None:intergenic
TGTCCGGGGTTTCTCTCACA+CGG 0.524180 6.3:+79980293 None:intergenic
TGAGAAGAACATCCAATTGG+TGG 0.524489 6.3:+79980376 None:intergenic
CATGCACATCAAATGGATGA+TGG 0.527228 6.3:-79979578 MS.gene61400:CDS
GCAGCTAAATCATCATAATC+GGG 0.528846 6.3:+79979398 None:intergenic
GCTAGGCTTGCGGCCTTGAG+AGG 0.528998 6.3:-79979377 MS.gene61400:CDS
ACTACAGAGAAAATCCGATC+AGG 0.529429 6.3:-79979971 MS.gene61400:CDS
CAAATATTTCAGGAGAGATA+CGG 0.534258 6.3:-79981178 MS.gene61400:CDS
CTGAAGCTGCGAGAAAATCA+AGG 0.534261 6.3:-79979766 MS.gene61400:CDS
AGGAAGTCTCCGAGTCATGC+AGG 0.534848 6.3:-79980259 MS.gene61400:CDS
ATCTCTTGTGATTGTTCGTG+AGG 0.537452 6.3:+79979503 None:intergenic
TGGATGTTAATGCTTATGGA+AGG 0.538899 6.3:-79983558 MS.gene61400:CDS
CAGAATTATCCAAACCTGAT+CGG 0.539142 6.3:+79979957 None:intergenic
TGCTCCAAGGTAAAAGACTT+CGG 0.539298 6.3:+79981014 None:intergenic
CGGCCTTGAGAGGAACATAA+GGG 0.541190 6.3:-79979367 None:intergenic
AGAATCGGATCGATGTGATA+AGG 0.542820 6.3:-79983645 MS.gene61400:CDS
GTCCGGGGTTTCTCTCACAC+GGG 0.543703 6.3:+79980294 None:intergenic
TGGTGATTTACATGATAGAA+GGG 0.549826 6.3:-79980326 MS.gene61400:CDS
TCGATGTGATAAGGAGGAAG+AGG 0.553696 6.3:-79983636 MS.gene61400:CDS
TCACGAACAATCACAAGAGA+TGG 0.557525 6.3:-79979501 MS.gene61400:CDS
GGTCAGATTTATGAGTATTG+TGG 0.559085 6.3:+79980686 None:intergenic
ATAAATCTGACCATTCAGTT+GGG 0.559105 6.3:-79980675 MS.gene61400:CDS
GGGATGGCATTACTGTAGTA+CGG 0.562596 6.3:+79980124 None:intergenic
CTTGACGGCTTACTCGGTCG+TGG 0.565345 6.3:-79984137 MS.gene61400:CDS
TCAAAAGGATGAAACTCCTA+AGG 0.565572 6.3:-79980152 MS.gene61400:CDS
CCTAGCAGTGGCAGTGTCCG+GGG 0.566606 6.3:+79980279 None:intergenic
CACCCGTGTGAGAGAAACCC+CGG 0.569000 6.3:-79980296 MS.gene61400:CDS
ATTATGATGATTTAGCTGCT+AGG 0.570267 6.3:-79979394 MS.gene61400:CDS
CTCTGGCCTCTCCAAGAACA+GGG 0.570679 6.3:+79979873 None:intergenic
TTCCTAGCAACGGATTGCCA+TGG 0.571107 6.3:+79980455 None:intergenic
TGCCTGAGAAAGCAAGAAGA+AGG 0.573909 6.3:-79979613 MS.gene61400:CDS
GTAAGTTGGGATGCACATGT+CGG 0.574747 6.3:+79979420 None:intergenic
TGATTTAGCTGCTAGGCTTG+CGG 0.576201 6.3:-79979387 MS.gene61400:CDS
GGCGCAGGCACTCGAAATCA+CGG 0.578205 6.3:-79979820 MS.gene61400:CDS
AAAGATGTCTATTGGAAGGA+GGG 0.583762 6.3:-79980412 MS.gene61400:CDS
GATGTCAAAATCCTCTGCTA+AGG 0.585023 6.3:-79980919 MS.gene61400:intron
GGATTGCCATGGCTATCCCT+TGG 0.591113 6.3:+79980466 None:intergenic
CAACCGAACCTTCTGCTCCA+AGG 0.593201 6.3:+79981001 None:intergenic
TAGCTTCCCTGCATTCCTCA+GGG 0.593501 6.3:+79981263 None:intergenic
TCAGAAAGATGTCTATTGGA+AGG 0.596054 6.3:-79980416 MS.gene61400:CDS
TCAGTTGGGAAACCATTACA+AGG 0.596326 6.3:-79980661 MS.gene61400:CDS
AGCCATGGCAATCCGTTGCT+AGG 0.597124 6.3:-79980457 MS.gene61400:CDS
CCCCGGACACTGCCACTGCT+AGG 0.597507 6.3:-79980279 MS.gene61400:CDS
ACAAGATGTCAATGTTAACT+CGG 0.603860 6.3:+79982549 None:intergenic
GAAAGATGTCTATTGGAAGG+AGG 0.605185 6.3:-79980413 MS.gene61400:CDS
GAACGATATTGGTGATCTGT+TGG 0.606795 6.3:-79983590 MS.gene61400:CDS
GGATGTTAATGCTTATGGAA+GGG 0.608856 6.3:-79983557 MS.gene61400:intron
AAGGATTCAAGCCAATCACT+AGG 0.610407 6.3:-79980507 MS.gene61400:CDS
TGGATGCCCTGAGGAATGCA+GGG 0.611806 6.3:-79981269 MS.gene61400:CDS
GTGCTTCAACACAAAATCAC+AGG 0.613053 6.3:+79982507 None:intergenic
AGAATGTTATGTCAATCAAG+AGG 0.615113 6.3:-79981146 MS.gene61400:intron
TCTCCTGAAATATTTGCCGA+AGG 0.621342 6.3:+79981185 None:intergenic
GTCCTGACCATTCTAACGGT+GGG 0.623146 6.3:-79980612 MS.gene61400:CDS
GAAACTGATCGAGGTGCACG+AGG 0.623244 6.3:+79979530 None:intergenic
AAAAGTCCTGACCATTCTAA+CGG 0.623323 6.3:-79980616 MS.gene61400:CDS
GCACAAATATCGGAATGGTA+AGG 0.624321 6.3:-79980590 MS.gene61400:CDS
GTGATTTACATGATAGAAGG+GGG 0.626943 6.3:-79980324 MS.gene61400:CDS
CGGGGTTTCTCTCACACGGG+TGG 0.633535 6.3:+79980297 None:intergenic
ATCGGATCGATGTGATAAGG+AGG 0.633916 6.3:-79983642 MS.gene61400:CDS
GGTGGGCACAAATATCGGAA+TGG 0.637524 6.3:-79980595 MS.gene61400:CDS
AGAATCCCCTGTTCTTGGAG+AGG 0.640686 6.3:-79979879 MS.gene61400:CDS
GGTGATTTACATGATAGAAG+GGG 0.642871 6.3:-79980325 MS.gene61400:CDS
TCAGTTTCTGTAGCACTGAG+AGG 0.643895 6.3:+79982485 None:intergenic
ACTCAGTCGAGCATGTCTAG+TGG 0.647004 6.3:+79979919 None:intergenic
ATGATGAAGTCAATCTACCA+AGG 0.648498 6.3:-79980483 MS.gene61400:CDS
AGTCCTGACCATTCTAACGG+TGG 0.653470 6.3:-79980613 MS.gene61400:CDS
CCATTTGCTGTTAATCATGG+TGG 0.653627 6.3:-79980208 MS.gene61400:CDS
TGATGAAGTCAATCTACCAA+GGG 0.661992 6.3:-79980482 MS.gene61400:CDS
ACTCGGAGACTTCCTAGCAG+TGG 0.663654 6.3:+79980267 None:intergenic
AATCTACCAAGGGATAGCCA+TGG 0.679655 6.3:-79980472 MS.gene61400:CDS
TGAGGACAACACCTTAGCAG+AGG 0.682039 6.3:+79980908 None:intergenic
TCTCAGTGCTACAGAAACTG+AGG 0.697538 6.3:-79982483 MS.gene61400:intron
CGAGTGCACCAATTTGACGA+TGG 0.698820 6.3:-79980346 MS.gene61400:CDS
TCTGGCCTCTCCAAGAACAG+GGG 0.703078 6.3:+79979874 None:intergenic
TGAGGAAGAGAAACTGATCG+AGG 0.716604 6.3:+79979521 None:intergenic
AAACTGATCGAGGTGCACGA+GGG 0.725458 6.3:+79979531 None:intergenic
AGACGAGACGAATCAAAACG+TGG 0.739618 6.3:-79979737 MS.gene61400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAAAGAATATACAA+TGG - chr6.3:79980292-79980311 MS.gene61400:CDS 10.0%
!! AAAAAAAAAATTGAACCATT+TGG + chr6.3:79979407-79979426 None:intergenic 15.0%
!! AAACTAAAAAGTAAATGAAA+TGG + chr6.3:79981310-79981329 None:intergenic 15.0%
!! AGATTATGAATATTTCAAAT+TGG - chr6.3:79980484-79980503 MS.gene61400:CDS 15.0%
!! ATAGAAATTTAAAAGTCATA+TGG - chr6.3:79981206-79981225 MS.gene61400:CDS 15.0%
!! ATTATAAGAATAATGATTGA+TGG - chr6.3:79981748-79981767 MS.gene61400:intron 15.0%
!! CTGTATTAAATAAAATCAAA+TGG - chr6.3:79981470-79981489 MS.gene61400:intron 15.0%
!! TATGTATAATTGTAATGATA+TGG + chr6.3:79982412-79982431 None:intergenic 15.0%
!! TTGAAATATTCATAATCTTA+GGG + chr6.3:79980482-79980501 None:intergenic 15.0%
!! TTTCATAATTAGAAATAGAA+TGG - chr6.3:79980366-79980385 MS.gene61400:CDS 15.0%
!!! AAAATTATTCATTTTGTAGT+TGG - chr6.3:79981967-79981986 MS.gene61400:intron 15.0%
!!! ACTATTTTCTTAATTTAACT+TGG - chr6.3:79980896-79980915 MS.gene61400:intron 15.0%
!!! CATTTGATTTTATTTAATAC+AGG + chr6.3:79981472-79981491 None:intergenic 15.0%
!!! GAAGATTTTTGTTTTAATAT+AGG + chr6.3:79983668-79983687 None:intergenic 15.0%
!!! GTTAATGTGTTTTTTTTTTT+TGG - chr6.3:79979810-79979829 MS.gene61400:CDS 15.0%
!!! TTTGAAATATTCATAATCTT+AGG + chr6.3:79980483-79980502 None:intergenic 15.0%
!!! TTTTAAATTTCTATAAGAGA+TGG + chr6.3:79981200-79981219 None:intergenic 15.0%
!! AAAACTAATAGAACAATGTA+AGG + chr6.3:79982629-79982648 None:intergenic 20.0%
!! AATCAATCATGTAAATAATG+AGG + chr6.3:79982701-79982720 None:intergenic 20.0%
!! AATGTAAGCATATGTTAAAA+TGG + chr6.3:79982758-79982777 None:intergenic 20.0%
!! AGATTATGACTATTTCAAAA+GGG + chr6.3:79980695-79980714 None:intergenic 20.0%
!! ATCAATCATGTAAATAATGA+GGG + chr6.3:79982700-79982719 None:intergenic 20.0%
!! ATTAATCTAAACAAAACAGT+GGG + chr6.3:79980421-79980440 None:intergenic 20.0%
!! ATTAGTATGTGGTTAAATAT+AGG + chr6.3:79980606-79980625 None:intergenic 20.0%
!! ATTGAAATGTAGTTATGATT+CGG - chr6.3:79979494-79979513 MS.gene61400:CDS 20.0%
!! GTTTCTAATTAGAAATAGAA+TGG - chr6.3:79980192-79980211 MS.gene61400:CDS 20.0%
!! TAGACTCTATCTAATTATAA+CGG - chr6.3:79981719-79981738 MS.gene61400:intron 20.0%
!! TAGTAAGTTGTTAAACTATA+AGG + chr6.3:79980572-79980591 None:intergenic 20.0%
!! TATGAAATTGTTGCAATTTA+TGG - chr6.3:79980030-79980049 MS.gene61400:CDS 20.0%
!! TATTAAAACAAAAATCTTCG+AGG - chr6.3:79983669-79983688 MS.gene61400:CDS 20.0%
!! TCATAAATAGTGATTTAGAA+TGG + chr6.3:79981351-79981370 None:intergenic 20.0%
!! TTAACAACTTACTATTAATG+TGG - chr6.3:79980578-79980597 MS.gene61400:CDS 20.0%
!! TTAGTATGTGGTTAAATATA+GGG + chr6.3:79980605-79980624 None:intergenic 20.0%
!!! AAATTGATAGTATTAGTATG+TGG + chr6.3:79980617-79980636 None:intergenic 20.0%
!!! AATGGATTATGAATATGTTT+TGG - chr6.3:79980147-79980166 MS.gene61400:CDS 20.0%
!!! ACTTGTGAGAATTTTAAATT+TGG - chr6.3:79980850-79980869 MS.gene61400:intron 20.0%
!!! CAAATGTATTTTATTGGTAT+TGG + chr6.3:79982793-79982812 None:intergenic 20.0%
!!! CTTTTGTTATTTATTCATGT+TGG - chr6.3:79981497-79981516 MS.gene61400:intron 20.0%
!!! GAGGTATAAATCTATTTTAA+TGG - chr6.3:79981046-79981065 MS.gene61400:intron 20.0%
!!! GTAACTTTTTTTATTTCTCA+GGG - chr6.3:79981088-79981107 MS.gene61400:intron 20.0%
!!! TAACTTTTTTTATTTCTCAG+GGG - chr6.3:79981089-79981108 MS.gene61400:intron 20.0%
!!! TAGTCTTTTGTTTAATGTAT+TGG - chr6.3:79980766-79980785 MS.gene61400:intron 20.0%
!!! TGTAACTTTTTTTATTTCTC+AGG - chr6.3:79981087-79981106 MS.gene61400:intron 20.0%
!!! TGTTTTAATATCTTTTACAG+TGG - chr6.3:79982221-79982240 MS.gene61400:intron 20.0%
!!! TTAGAATTAGGTTTTACATA+AGG + chr6.3:79983416-79983435 None:intergenic 20.0%
!!! TTTTAATATAGGAAATTCTC+TGG + chr6.3:79983657-79983676 None:intergenic 20.0%
! AAAAAAATTGAACCATTTGG+CGG + chr6.3:79979404-79979423 None:intergenic 25.0%
! AATCCTTCTTAGATTATGTT+AGG + chr6.3:79980644-79980663 None:intergenic 25.0%
! AGAAATAGAATGGAATTTGA+GGG - chr6.3:79980202-79980221 MS.gene61400:CDS 25.0%
! AGTTATGTGAGACTATTATA+TGG - chr6.3:79980057-79980076 MS.gene61400:CDS 25.0%
! ATAAAAAAGACGAAGAAGAA+AGG - chr6.3:79983825-79983844 MS.gene61400:intron 25.0%
! ATAGTAAGTGGCTAATTATA+GGG + chr6.3:79980540-79980559 None:intergenic 25.0%
! ATCCTTCTTAGATTATGTTA+GGG + chr6.3:79980643-79980662 None:intergenic 25.0%
! ATGTAAATAATGAGGGAAAA+CGG + chr6.3:79982693-79982712 None:intergenic 25.0%
! ATTAGAAAACCACCAAAAAT+AGG + chr6.3:79981243-79981262 None:intergenic 25.0%
! ATTCTATTAAACTGTCAAGT+TGG - chr6.3:79980513-79980532 MS.gene61400:CDS 25.0%
! CAAATAGGCTTTCTTATAAT+TGG - chr6.3:79981656-79981675 MS.gene61400:intron 25.0%
! GAGATTATGACTATTTCAAA+AGG + chr6.3:79980696-79980715 None:intergenic 25.0%
! GATTAATCTAAACAAAACAG+TGG + chr6.3:79980422-79980441 None:intergenic 25.0%
! TAAAAAAGACGAAGAAGAAA+GGG - chr6.3:79983826-79983845 MS.gene61400:intron 25.0%
! TAGAAATAGAATGGAATTTG+AGG - chr6.3:79980201-79980220 MS.gene61400:CDS 25.0%
! TTGTTAATGTAGTTATGATG+AGG - chr6.3:79979657-79979676 MS.gene61400:CDS 25.0%
! TTTAATACAGGAAAGTAAAG+TGG + chr6.3:79981460-79981479 None:intergenic 25.0%
! TTTCTTCTTCATTTGAATCA+TGG - chr6.3:79981116-79981135 MS.gene61400:intron 25.0%
!! ACTTGATTTTGTTGAATTTG+TGG - chr6.3:79979984-79980003 MS.gene61400:CDS 25.0%
!! ATTTGAGACTTTGTTTGATT+TGG - chr6.3:79980342-79980361 MS.gene61400:CDS 25.0%
!! CACAAGCAAATGTATTTTAT+TGG + chr6.3:79982799-79982818 None:intergenic 25.0%
!!! AAGTTTTTGAAGAACGATAT+TGG - chr6.3:79979909-79979928 MS.gene61400:CDS 25.0%
!!! ACTGTTTTGATGTCATATAA+TGG - chr6.3:79981841-79981860 MS.gene61400:intron 25.0%
!!! TTGTCTTATTTATTTTGAGC+TGG - chr6.3:79982019-79982038 MS.gene61400:intron 25.0%
AAAATACATTTGCTTGTGCA+GGG - chr6.3:79982801-79982820 MS.gene61400:intron 30.0%
AAAATCAGGGACTAATTTAG+TGG + chr6.3:79980444-79980463 None:intergenic 30.0%
AATTGGAATTTCAACTCTCA+AGG - chr6.3:79981673-79981692 MS.gene61400:intron 30.0%
ACAAGATGTCAATGTTAACT+CGG + chr6.3:79980964-79980983 None:intergenic 30.0%
ACGGTAACTATATCAAGAAT+TGG + chr6.3:79982674-79982693 None:intergenic 30.0%
AGAATGTTATGTCAATCAAG+AGG - chr6.3:79982364-79982383 MS.gene61400:intron 30.0%
AGCAGCTAAATCATCATAAT+CGG + chr6.3:79984116-79984135 None:intergenic 30.0%
AGTAAAATTTGACAGAGTCA+CGG - chr6.3:79980668-79980687 MS.gene61400:CDS 30.0%
AGTACAGAAATGTGAAAGAA+AGG - chr6.3:79981782-79981801 MS.gene61400:intron 30.0%
ATAAATCTGACCATTCAGTT+GGG - chr6.3:79982835-79982854 MS.gene61400:intron 30.0%
ATCAATCAAATTCAAGACCA+AGG + chr6.3:79980103-79980122 None:intergenic 30.0%
ATGGAACACTAAATTCACAT+AGG + chr6.3:79981291-79981310 None:intergenic 30.0%
ATGGTGATTTACATGATAGA+AGG - chr6.3:79983183-79983202 MS.gene61400:intron 30.0%
ATTATGATGATTTAGCTGCT+AGG - chr6.3:79984116-79984135 MS.gene61400:intron 30.0%
CAAATATTTCAGGAGAGATA+CGG - chr6.3:79982332-79982351 MS.gene61400:intron 30.0%
CATCGTCAAACAAAATTTGT+AGG + chr6.3:79983799-79983818 None:intergenic 30.0%
CGATTTACTTCAAAATTCGA+AGG + chr6.3:79979703-79979722 None:intergenic 30.0%
CGGTAACTATATCAAGAATT+GGG + chr6.3:79982673-79982692 None:intergenic 30.0%
GATAGTAAGTGGCTAATTAT+AGG + chr6.3:79980541-79980560 None:intergenic 30.0%
TAAAATACATTTGCTTGTGC+AGG - chr6.3:79982800-79982819 MS.gene61400:intron 30.0%
TAAAATTCTCACAAGTCCTA+AGG + chr6.3:79980846-79980865 None:intergenic 30.0%
TAAATTCACATAGGAAGACA+AGG + chr6.3:79981282-79981301 None:intergenic 30.0%
TCGATAATTCTTGATACGAA+TGG - chr6.3:79982075-79982094 MS.gene61400:intron 30.0%
TCTTCACATATTGACAATGA+TGG - chr6.3:79983470-79983489 MS.gene61400:intron 30.0%
TGATGTATTGAAGGATTTGT+TGG + chr6.3:79983500-79983519 None:intergenic 30.0%
TGGTGATTTACATGATAGAA+GGG - chr6.3:79983184-79983203 MS.gene61400:intron 30.0%
TTAGCCACTTACTATCAATT+AGG - chr6.3:79980545-79980564 MS.gene61400:CDS 30.0%
! AATGGTTATGCTTTAGATGT+GGG - chr6.3:79981064-79981083 MS.gene61400:intron 30.0%
! ATCGAGAATATAGAGTGTTA+GGG + chr6.3:79982060-79982079 None:intergenic 30.0%
! ATTGATGATACTGTTAGTCA+AGG - chr6.3:79980117-79980136 MS.gene61400:CDS 30.0%
! GAATTAGGTTTTACATAAGG+TGG + chr6.3:79983413-79983432 None:intergenic 30.0%
! GATGTATTGAAGGATTTGTT+GGG + chr6.3:79983499-79983518 None:intergenic 30.0%
! TAATGGTTATGCTTTAGATG+TGG - chr6.3:79981063-79981082 MS.gene61400:intron 30.0%
! TAATTCTGAACATGATTTGC+AGG - chr6.3:79983568-79983587 MS.gene61400:CDS 30.0%
! TATCGAGAATATAGAGTGTT+AGG + chr6.3:79982061-79982080 None:intergenic 30.0%
! TGTAGTTATGATGAGGTTTT+AGG - chr6.3:79979664-79979683 MS.gene61400:CDS 30.0%
! TTCGGAGTTTTCAATAAAGT+GGG - chr6.3:79982546-79982565 MS.gene61400:CDS 30.0%
!! CTTGTTATGATTTTGTTGAG+TGG - chr6.3:79980979-79980998 MS.gene61400:CDS 30.0%
!! TATTCATGAGATGGTTTTAC+AGG - chr6.3:79980923-79980942 MS.gene61400:CDS 30.0%
!! TGATTAAGTTGACGAAGAAT+CGG - chr6.3:79979850-79979869 MS.gene61400:CDS 30.0%
!! TTAGTAACATTTTAGTGTGC+TGG - chr6.3:79981385-79981404 MS.gene61400:intron 30.0%
!!! TCTGAATGTTGATGATGTTT+TGG - chr6.3:79980317-79980336 MS.gene61400:CDS 30.0%
AAAAGTCCTGACCATTCTAA+CGG - chr6.3:79982894-79982913 MS.gene61400:intron 35.0%
AAACCACCAAAAATAGGAAG+TGG + chr6.3:79981237-79981256 None:intergenic 35.0%
AAAGATGTCTATTGGAAGGA+GGG - chr6.3:79983098-79983117 MS.gene61400:intron 35.0%
AAATCTAAGCTCCCTGAAAA+AGG - chr6.3:79982984-79983003 MS.gene61400:intron 35.0%
AATAGAACAATGTAAGGCTG+AGG + chr6.3:79982623-79982642 None:intergenic 35.0%
ACTTCATCATACCTAGTGAT+TGG + chr6.3:79983017-79983036 None:intergenic 35.0%
AGCTTCAGCATCTTCTTTAT+TGG + chr6.3:79983732-79983751 None:intergenic 35.0%
AGTATGCTAAAACCACCAAT+TGG - chr6.3:79983122-79983141 MS.gene61400:intron 35.0%
ATCATCATAATCGGGTAAGT+TGG + chr6.3:79984107-79984126 None:intergenic 35.0%
ATGATGAAGTCAATCTACCA+AGG - chr6.3:79983027-79983046 MS.gene61400:intron 35.0%
ATTCTTGATACGAATGGAAC+AGG - chr6.3:79982081-79982100 MS.gene61400:intron 35.0%
ATTGATACAATCAACATGCC+AGG - chr6.3:79981145-79981164 MS.gene61400:intron 35.0%
CAGAATTATCCAAACCTGAT+CGG + chr6.3:79983556-79983575 None:intergenic 35.0%
CAGCATTTCACATGAACTAT+TGG + chr6.3:79982121-79982140 None:intergenic 35.0%
CATAAATCTGACCATTCAGT+TGG - chr6.3:79982834-79982853 MS.gene61400:intron 35.0%
CATCCTCAGTTCAAAATCTT+TGG + chr6.3:79982575-79982594 None:intergenic 35.0%
CCCAAAATTATTCATTCCGT+GGG - chr6.3:79981805-79981824 MS.gene61400:intron 35.0%
CGATTGATATAGTTATGCCT+TGG - chr6.3:79980083-79980102 MS.gene61400:CDS 35.0%
CTATGCGTTGTACAAAATCA+GGG + chr6.3:79980457-79980476 None:intergenic 35.0%
CTCTCAGAGAAAAGTTCAAA+AGG - chr6.3:79983343-79983362 MS.gene61400:intron 35.0%
CTTCTCAGAAAGATGTCTAT+TGG - chr6.3:79983090-79983109 MS.gene61400:intron 35.0%
CTTGGATCATATTCATGAGA+TGG - chr6.3:79980914-79980933 MS.gene61400:intron 35.0%
GAATCGATAATAGAGACCTT+AGG - chr6.3:79980827-79980846 MS.gene61400:intron 35.0%
GCAATTTAATCAGTCAGTTC+AGG + chr6.3:79982448-79982467 None:intergenic 35.0%
GCAGCTAAATCATCATAATC+GGG + chr6.3:79984115-79984134 None:intergenic 35.0%
GCATACAACTTTGAGCAAAT+AGG - chr6.3:79981641-79981660 MS.gene61400:intron 35.0%
GGATGTTAATGCTTATGGAA+GGG - chr6.3:79979953-79979972 MS.gene61400:CDS 35.0%
GGATTGGATGTTAATGCTTA+TGG - chr6.3:79979948-79979967 MS.gene61400:CDS 35.0%
GGTGATTTACATGATAGAAG+GGG - chr6.3:79983185-79983204 MS.gene61400:intron 35.0%
GTAAATCACCATCGTCAAAT+TGG + chr6.3:79983175-79983194 None:intergenic 35.0%
GTCCCTAACATAATCTAAGA+AGG - chr6.3:79980638-79980657 MS.gene61400:CDS 35.0%
GTGATTTACATGATAGAAGG+GGG - chr6.3:79983186-79983205 MS.gene61400:intron 35.0%
GTTAGTCAAGGAATGTAGAA+TGG - chr6.3:79980129-79980148 MS.gene61400:CDS 35.0%
GTTGATGCAAGAGATTTCTT+CGG - chr6.3:79982528-79982547 MS.gene61400:CDS 35.0%
TCAGAAAGATGTCTATTGGA+AGG - chr6.3:79983094-79983113 MS.gene61400:intron 35.0%
TCATCATAATCGGGTAAGTT+GGG + chr6.3:79984106-79984125 None:intergenic 35.0%
TCTATACAGTATATGAAGCC+TGG + chr6.3:79981166-79981185 None:intergenic 35.0%
TGATGAAGTCAATCTACCAA+GGG - chr6.3:79983028-79983047 MS.gene61400:intron 35.0%
TGGATGTTAATGCTTATGGA+AGG - chr6.3:79979952-79979971 MS.gene61400:CDS 35.0%
TGTTAAAATGGTTTCCCGAA+AGG + chr6.3:79982746-79982765 None:intergenic 35.0%
TTCTTGATACGAATGGAACA+GGG - chr6.3:79982082-79982101 MS.gene61400:intron 35.0%
! ACCCACGGAATGAATAATTT+TGG + chr6.3:79981809-79981828 None:intergenic 35.0%
! ACTCCAAAGATTTTGAACTG+AGG - chr6.3:79982569-79982588 MS.gene61400:intron 35.0%
! AGGACCTAATTGATAGTAAG+TGG + chr6.3:79980552-79980571 None:intergenic 35.0%
! CATGATTGATTTAGTCATCG+AGG - chr6.3:79982710-79982729 MS.gene61400:intron 35.0%
! CCCACGGAATGAATAATTTT+GGG + chr6.3:79981808-79981827 None:intergenic 35.0%
! CTCGTCTTGAGTTTAGAATT+AGG + chr6.3:79983428-79983447 None:intergenic 35.0%
! CTTCGGAGTTTTCAATAAAG+TGG - chr6.3:79982545-79982564 MS.gene61400:CDS 35.0%
! GGTCAGATTTATGAGTATTG+TGG + chr6.3:79982827-79982846 None:intergenic 35.0%
! GTCTAACCACTTCCTATTTT+TGG - chr6.3:79981228-79981247 MS.gene61400:CDS 35.0%
! TAGGTTTTACATAAGGTGGT+GGG + chr6.3:79983409-79983428 None:intergenic 35.0%
! TCAGGCTTTTGATGTATTGA+AGG + chr6.3:79983509-79983528 None:intergenic 35.0%
! TTAGGTTTTACATAAGGTGG+TGG + chr6.3:79983410-79983429 None:intergenic 35.0%
!! GAACCATTTGCTGTTAATCA+TGG - chr6.3:79983299-79983318 MS.gene61400:intron 35.0%
!! TTGGCTTGAATCCTTTTTCA+GGG + chr6.3:79982998-79983017 None:intergenic 35.0%
!! TTTTCAGGGAGCTTAGATTT+GGG + chr6.3:79982984-79983003 None:intergenic 35.0%
!!! AGTAAGTTTTGTTCTACCCA+CGG + chr6.3:79981824-79981843 None:intergenic 35.0%
!!! ATTGGCTTGAATCCTTTTTC+AGG + chr6.3:79982999-79983018 None:intergenic 35.0%
!!! CGAGGTTTTTGTTTTCCTTT+CGG - chr6.3:79982728-79982747 MS.gene61400:intron 35.0%
!!! GAGGTTTTTGTTTTCCTTTC+GGG - chr6.3:79982729-79982748 MS.gene61400:intron 35.0%
!!! TAACCACTTCCTATTTTTGG+TGG - chr6.3:79981231-79981250 MS.gene61400:CDS 35.0%
!!! TGGTTGGCTTTTTGCTATAA+TGG + chr6.3:79983871-79983890 None:intergenic 35.0%
!!! TTTTTCAGGGAGCTTAGATT+TGG + chr6.3:79982985-79983004 None:intergenic 35.0%
AAATCCGTCCATGACTTTGT+AGG + chr6.3:79980739-79980758 None:intergenic 40.0%
AAGGATTCAAGCCAATCACT+AGG - chr6.3:79983003-79983022 MS.gene61400:intron 40.0%
AAGTCGTCATGCACATCAAA+TGG - chr6.3:79983925-79983944 MS.gene61400:intron 40.0%
AATCCGTCCATGACTTTGTA+GGG + chr6.3:79980738-79980757 None:intergenic 40.0%
ACCAATTGGATGTTCTTCTC+AGG - chr6.3:79983136-79983155 MS.gene61400:intron 40.0%
ACCATATCTGGTGTCTTATC+AGG + chr6.3:79983959-79983978 None:intergenic 40.0%
ACCTGATAAGACACCAGATA+TGG - chr6.3:79983955-79983974 MS.gene61400:intron 40.0%
ACTACAGAGAAAATCCGATC+AGG - chr6.3:79983539-79983558 MS.gene61400:intron 40.0%
AGAATCGGATCGATGTGATA+AGG - chr6.3:79979865-79979884 MS.gene61400:CDS 40.0%
AGAGAAAATCCGATCAGGTT+TGG - chr6.3:79983544-79983563 MS.gene61400:intron 40.0%
ATCTCAGACTTGCCTTGTAA+TGG + chr6.3:79982864-79982883 None:intergenic 40.0%
ATCTCTTGTGATTGTTCGTG+AGG + chr6.3:79984010-79984029 None:intergenic 40.0%
CATGCACATCAAATGGATGA+TGG - chr6.3:79983932-79983951 MS.gene61400:intron 40.0%
CCACCATGATTAACAGCAAA+TGG + chr6.3:79983305-79983324 None:intergenic 40.0%
CCTATGCGTTGTACAAAATC+AGG + chr6.3:79980458-79980477 None:intergenic 40.0%
GAAAGATGTCTATTGGAAGG+AGG - chr6.3:79983097-79983116 MS.gene61400:intron 40.0%
GATGTCAAAATCCTCTGCTA+AGG - chr6.3:79982591-79982610 MS.gene61400:intron 40.0%
GATTGAAATCCTGCATGACT+CGG + chr6.3:79983263-79983282 None:intergenic 40.0%
GCACAAATATCGGAATGGTA+AGG - chr6.3:79982920-79982939 MS.gene61400:intron 40.0%
GCCCAAAATTATTCATTCCG+TGG - chr6.3:79981804-79981823 MS.gene61400:intron 40.0%
GTAATGGTTTCCCAACTGAA+TGG + chr6.3:79982848-79982867 None:intergenic 40.0%
GTGCTTCAACACAAAATCAC+AGG + chr6.3:79981006-79981025 None:intergenic 40.0%
TCACGAACAATCACAAGAGA+TGG - chr6.3:79984009-79984028 MS.gene61400:intron 40.0%
TCAGTTGGGAAACCATTACA+AGG - chr6.3:79982849-79982868 MS.gene61400:intron 40.0%
TCCTGAGAAGAACATCCAAT+TGG + chr6.3:79983140-79983159 None:intergenic 40.0%
TCTCCTGAAATATTTGCCGA+AGG + chr6.3:79982328-79982347 None:intergenic 40.0%
TCTTGATACGAATGGAACAG+GGG - chr6.3:79982083-79982102 MS.gene61400:intron 40.0%
TGAGAAGAACATCCAATTGG+TGG + chr6.3:79983137-79983156 None:intergenic 40.0%
TGCAATATGTATGAAGACCC+CGG + chr6.3:79981611-79981630 None:intergenic 40.0%
TGCTCCAAGGTAAAAGACTT+CGG + chr6.3:79982499-79982518 None:intergenic 40.0%
TTTCCAGCTGAATATAGCTC+CGG - chr6.3:79981589-79981608 MS.gene61400:intron 40.0%
! AGCTCTTCTTTTCCTAGCAA+CGG + chr6.3:79983068-79983087 None:intergenic 40.0%
! ATTGGTGATCTGTTGGTGAA+TGG - chr6.3:79979927-79979946 MS.gene61400:CDS 40.0%
! CCTGATTTTGTACAACGCAT+AGG - chr6.3:79980455-79980474 MS.gene61400:CDS 40.0%
! CTCTGAGAGTTATCAAGATC+AGG + chr6.3:79983332-79983351 None:intergenic 40.0%
! GAACGATATTGGTGATCTGT+TGG - chr6.3:79979920-79979939 MS.gene61400:CDS 40.0%
! GAATCCGAAGTCTTTTACCT+TGG - chr6.3:79982492-79982511 MS.gene61400:CDS 40.0%
! TACAAAGTCATGGACGGATT+TGG - chr6.3:79980738-79980757 MS.gene61400:intron 40.0%
! TGATCTGTTGGTGAATGGAT+TGG - chr6.3:79979932-79979951 MS.gene61400:CDS 40.0%
! TTTGTAGGGTGCTCTCAAAT+AGG + chr6.3:79980724-79980743 None:intergenic 40.0%
!! CCATTTGCTGTTAATCATGG+TGG - chr6.3:79983302-79983321 MS.gene61400:intron 40.0%
!!! TTTTACATAAGGTGGTGGGA+TGG + chr6.3:79983405-79983424 None:intergenic 40.0%
AACAAAAATCTTCGAGGCGC+AGG - chr6.3:79983675-79983694 MS.gene61400:intron 45.0%
AATCTACCAAGGGATAGCCA+TGG - chr6.3:79983038-79983057 MS.gene61400:intron 45.0%
ACATGCTCGACTGAGTAAAC+AGG - chr6.3:79983598-79983617 MS.gene61400:CDS 45.0%
AGACGAGACGAATCAAAACG+TGG - chr6.3:79983773-79983792 MS.gene61400:intron 45.0%
ATCGGATCGATGTGATAAGG+AGG - chr6.3:79979868-79979887 MS.gene61400:CDS 45.0%
ATTTGTGCCCACCGTTAGAA+TGG + chr6.3:79982908-79982927 None:intergenic 45.0%
CAGGAAAGTAAAGTGGCAAC+AGG + chr6.3:79981453-79981472 None:intergenic 45.0%
CGACCTTCGGCAAATATTTC+AGG - chr6.3:79982322-79982341 MS.gene61400:intron 45.0%
CTAACGGTGGGCACAAATAT+CGG - chr6.3:79982910-79982929 MS.gene61400:intron 45.0%
CTGAAGCTGCGAGAAAATCA+AGG - chr6.3:79983744-79983763 MS.gene61400:intron 45.0%
CTGTAGTACGGCTTTACCTT+AGG + chr6.3:79983377-79983396 None:intergenic 45.0%
CTTGATACGAATGGAACAGG+GGG - chr6.3:79982084-79982103 MS.gene61400:intron 45.0%
GACCTTCTTCTTGCTTTCTC+AGG + chr6.3:79983902-79983921 None:intergenic 45.0%
GAGAAAGAATCCCCTGTTCT+TGG - chr6.3:79983626-79983645 MS.gene61400:CDS 45.0%
GGAAGACAAGGAGAAAAGTC+AGG + chr6.3:79981270-79981289 None:intergenic 45.0%
GGGATGGCATTACTGTAGTA+CGG + chr6.3:79983389-79983408 None:intergenic 45.0%
TCGATGTGATAAGGAGGAAG+AGG - chr6.3:79979874-79979893 MS.gene61400:CDS 45.0%
TCTCAGTGCTACAGAAACTG+AGG - chr6.3:79981027-79981046 MS.gene61400:CDS 45.0%
TGAGCTGGTCATCTGAGTAT+TGG - chr6.3:79982034-79982053 MS.gene61400:intron 45.0%
TGAGGAAGAGAAACTGATCG+AGG + chr6.3:79983992-79984011 None:intergenic 45.0%
TGATTTAGCTGCTAGGCTTG+CGG - chr6.3:79984123-79984142 MS.gene61400:CDS 45.0%
TGCCTGAGAAAGCAAGAAGA+AGG - chr6.3:79983897-79983916 MS.gene61400:intron 45.0%
TGCTTTCTCAGGCACATTGA+TGG + chr6.3:79983891-79983910 None:intergenic 45.0%
TTACCTTGGAGCAGAAGGTT+CGG - chr6.3:79982506-79982525 MS.gene61400:CDS 45.0%
TTCCAGCTGAATATAGCTCC+GGG - chr6.3:79981590-79981609 MS.gene61400:intron 45.0%
! CGGGCTTCTTTTGATCTATC+TGG + chr6.3:79984073-79984092 None:intergenic 45.0%
! GTAAGTTGGGATGCACATGT+CGG + chr6.3:79984093-79984112 None:intergenic 45.0%
! GTCTTTTACCTTGGAGCAGA+AGG - chr6.3:79982501-79982520 MS.gene61400:CDS 45.0%
! TAAGTTGGGATGCACATGTC+GGG + chr6.3:79984092-79984111 None:intergenic 45.0%
! TCAGTTTCTGTAGCACTGAG+AGG + chr6.3:79981028-79981047 None:intergenic 45.0%
! TTCTCAGGCACATTGATGGT+TGG + chr6.3:79983887-79983906 None:intergenic 45.0%
!! GAGATGGTTTTACAGGCTGA+AGG - chr6.3:79980930-79980949 MS.gene61400:CDS 45.0%
AAACTGATCGAGGTGCACGA+GGG + chr6.3:79983982-79984001 None:intergenic 50.0%
ACTCAGTCGAGCATGTCTAG+TGG + chr6.3:79983594-79983613 None:intergenic 50.0%
AGAATCCCCTGTTCTTGGAG+AGG - chr6.3:79983631-79983650 MS.gene61400:CDS 50.0%
AGTCCTGACCATTCTAACGG+TGG - chr6.3:79982897-79982916 MS.gene61400:intron 50.0%
ATAGCTTCCCTGCATTCCTC+AGG + chr6.3:79982251-79982270 None:intergenic 50.0%
CGAGTGCACCAATTTGACGA+TGG - chr6.3:79983164-79983183 MS.gene61400:intron 50.0%
GCACCCTACAAAGTCATGGA+CGG - chr6.3:79980732-79980751 MS.gene61400:intron 50.0%
GGTGGGCACAAATATCGGAA+TGG - chr6.3:79982915-79982934 MS.gene61400:intron 50.0%
GTCCTGACCATTCTAACGGT+GGG - chr6.3:79982898-79982917 MS.gene61400:intron 50.0%
TACCAGAGTTACGCGACCTT+CGG - chr6.3:79982309-79982328 MS.gene61400:intron 50.0%
TAGCTTCCCTGCATTCCTCA+GGG + chr6.3:79982250-79982269 None:intergenic 50.0%
TCCAGCTGAATATAGCTCCG+GGG - chr6.3:79981591-79981610 MS.gene61400:intron 50.0%
TCTGTAGTAGAAGCAGCGTC+AGG + chr6.3:79983527-79983546 None:intergenic 50.0%
TGAGGACAACACCTTAGCAG+AGG + chr6.3:79982605-79982624 None:intergenic 50.0%
! CTTTTACAGTGGATGCCCTG+AGG - chr6.3:79982232-79982251 MS.gene61400:intron 50.0%
!! GAGAGCACCCTACAAAGTCA+TGG - chr6.3:79980728-79980747 MS.gene61400:intron 50.0%
!! TTCCTAGCAACGGATTGCCA+TGG + chr6.3:79983058-79983077 None:intergenic 50.0%
ACCCCGGAGCTATATTCAGC+TGG + chr6.3:79981595-79981614 None:intergenic 55.0%
ACTCGGAGACTTCCTAGCAG+TGG + chr6.3:79983246-79983265 None:intergenic 55.0%
AGCCATGGCAATCCGTTGCT+AGG - chr6.3:79983053-79983072 MS.gene61400:intron 55.0%
AGGAAGTCTCCGAGTCATGC+AGG - chr6.3:79983251-79983270 MS.gene61400:intron 55.0%
CAACCGAACCTTCTGCTCCA+AGG + chr6.3:79982512-79982531 None:intergenic 55.0%
CTCTGGCCTCTCCAAGAACA+GGG + chr6.3:79983640-79983659 None:intergenic 55.0%
GAAACTGATCGAGGTGCACG+AGG + chr6.3:79983983-79984002 None:intergenic 55.0%
GGATTGCCATGGCTATCCCT+TGG + chr6.3:79983047-79983066 None:intergenic 55.0%
TCTCTGGCCTCTCCAAGAAC+AGG + chr6.3:79983641-79983660 None:intergenic 55.0%
TCTGGCCTCTCCAAGAACAG+GGG + chr6.3:79983639-79983658 None:intergenic 55.0%
TGCCCACCGTTAGAATGGTC+AGG + chr6.3:79982903-79982922 None:intergenic 55.0%
TGGATGCCCTGAGGAATGCA+GGG - chr6.3:79982241-79982260 MS.gene61400:intron 55.0%
TGTCCGGGGTTTCTCTCACA+CGG + chr6.3:79983220-79983239 None:intergenic 55.0%
TTCCTAGCAGTGGCAGTGTC+CGG + chr6.3:79983236-79983255 None:intergenic 55.0%
CACCCGTGTGAGAGAAACCC+CGG - chr6.3:79983214-79983233 MS.gene61400:intron 60.0%
CTTGACGGCTTACTCGGTCG+TGG - chr6.3:79979373-79979392 MS.gene61400:CDS 60.0%
GGCGCAGGCACTCGAAATCA+CGG - chr6.3:79983690-79983709 MS.gene61400:intron 60.0%
GGTGCACGAGGGACCATATC+TGG + chr6.3:79983971-79983990 None:intergenic 60.0%
GTCCGGGGTTTCTCTCACAC+GGG + chr6.3:79983219-79983238 None:intergenic 60.0%
GTCGTGGATTCGCCGCCAAA+TGG - chr6.3:79979389-79979408 MS.gene61400:CDS 60.0%
GTGGATGCCCTGAGGAATGC+AGG - chr6.3:79982240-79982259 MS.gene61400:intron 60.0%
TCCTAGCAGTGGCAGTGTCC+GGG + chr6.3:79983235-79983254 None:intergenic 60.0%
TGCCGAAGGTCGCGTAACTC+TGG + chr6.3:79982314-79982333 None:intergenic 60.0%
CCTAGCAGTGGCAGTGTCCG+GGG + chr6.3:79983234-79983253 None:intergenic 65.0%
CGGGGTTTCTCTCACACGGG+TGG + chr6.3:79983216-79983235 None:intergenic 65.0%
GCTAGGCTTGCGGCCTTGAG+AGG - chr6.3:79984133-79984152 MS.gene61400:CDS 65.0%
CCCCGGACACTGCCACTGCT+AGG - chr6.3:79983231-79983250 MS.gene61400:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 79979370 79984162 79979370 ID=MS.gene61400
chr6.3 mRNA 79979370 79984162 79979370 ID=MS.gene61400.t1;Parent=MS.gene61400
chr6.3 exon 79984122 79984162 79984122 ID=MS.gene61400.t1.exon1;Parent=MS.gene61400.t1
chr6.3 CDS 79984122 79984162 79984122 ID=cds.MS.gene61400.t1;Parent=MS.gene61400.t1
chr6.3 exon 79983558 79983690 79983558 ID=MS.gene61400.t1.exon2;Parent=MS.gene61400.t1
chr6.3 CDS 79983558 79983690 79983558 ID=cds.MS.gene61400.t1;Parent=MS.gene61400.t1
chr6.3 exon 79982484 79982587 79982484 ID=MS.gene61400.t1.exon3;Parent=MS.gene61400.t1
chr6.3 CDS 79982484 79982587 79982484 ID=cds.MS.gene61400.t1;Parent=MS.gene61400.t1
chr6.3 exon 79981147 79981291 79981147 ID=MS.gene61400.t1.exon4;Parent=MS.gene61400.t1
chr6.3 CDS 79981147 79981291 79981147 ID=cds.MS.gene61400.t1;Parent=MS.gene61400.t1
chr6.3 exon 79980920 79981054 79980920 ID=MS.gene61400.t1.exon5;Parent=MS.gene61400.t1
chr6.3 CDS 79980920 79981054 79980920 ID=cds.MS.gene61400.t1;Parent=MS.gene61400.t1
chr6.3 exon 79979370 79980710 79979370 ID=MS.gene61400.t1.exon6;Parent=MS.gene61400.t1
chr6.3 CDS 79979370 79980710 79979370 ID=cds.MS.gene61400.t1;Parent=MS.gene61400.t1
Gene Sequence

>MS.gene61400

ATGCTTGACGGCTTACTCGGTCGTGGATTCGCCGCCAAATGGTTCAATTTTTTTTTTATTTCTAATTTTTTTTCATTTTTTTTTGTGTATTTTGCATGTTTGATTTAGTTTCTGATGCAGAGATATTGAAATGTAGTTATGATTCGGTTTCAATTTTTTTGTTTTTTGTTCATTTTGAAGTAAATCGTTGAAAAAATTGACGAAGAATCGTTGATCAAGATTTTAATGATTTTTTTTTCTGTTTTGCATGCTTGATTTAGTTTCTGATTAAGAAAATTTGAATTAGTTTGTTAATGTAGTTATGATGAGGTTTTAGGTTTTTTTTTTTTTCCTTCGAATTTTGAAGTAAATCGATGAAGAATTGTTGATTAATATTTGAATGCTGTTTTGTGTTTTGCGTGCTTGATTTAGTTTCTGATTAAGAAAATTTGAATGAGTTTGTTAATGTGTTTTTTTTTTTTGGATTTTGAAGTAAGTCGTTGATTAAGTTGACGAAGAATCGGATCGATGTGATAAGGAGGAAGAGGAAAGCGACAGAGAAGTTTTTGAAGAACGATATTGGTGATCTGTTGGTGAATGGATTGGATGTTAATGCTTATGGAAGGGTAATTGCTACTTGATTTTGTTGAATTTGTGGATTTATTTGTTTGAGATTTTTATTATGAAATTGTTGCAATTTATGGATTTAGTTATGTGAGACTATTATATGGAATCGATTGATATAGTTATGCCTTGGTCTTGAATTTGATTGATGATACTGTTAGTCAAGGAATGTAGAATGGATTATGAATATGTTTTGGCGATTCGAGACGTGTTTTATTCGTTTCTAATTAGAAATAGAATGGAATTTGAGGGAGATGAGATTTGTTCTTTCACTATAGTTTTTCTGACTTGCTGAGTTTTGTTCTTGCTTGATTCTACTTTTAATTAAAGAATATACAATGGATTCTGAATGTTGATGATGTTTTGGCGATTTGAGACTTTGTTTGATTTGGTTTTCATAATTAGAAATAGAATGGAATTTGAGTGAGATGAGATTTGTTTTTTTCCCACTGTTTTGTTTAGATTAATCCACTAAATTAGTCCCTGATTTTGTACAACGCATAGGTCCCTAAGATTATGAATATTTCAAATTGGTCTCTGATTCTATTAAACTGTCAAGTTGGTCCCTATAATTAGCCACTTACTATCAATTAGGTCCTTATAGTTTAACAACTTACTATTAATGTGGTCCCTATATTTAACCACATACTAATACTATCAATTTAGTCCCTAACATAATCTAAGAAGGATTAATGAGTAAAATTTGACAGAGTCACGGACCCTTTTGAAATAGTCATAATCTCAGTGACCTATTTGAGAGCACCCTACAAAGTCATGGACGGATTTGGTAGTTTAGTCTTTTGTTTAATGTATTGGATATATGAATATCTTATCTACAGTGATTTTTCATTTTTGAATCGATAATAGAGACCTTAGGACTTGTGAGAATTTTAAATTTGGTTAGATTATTGTGTTTGCAACACACTATTTTCTTAATTTAACTTGGATCATATTCATGAGATGGTTTTACAGGCTGAAGGACTCATTGCCGAGTTAACATTGACATCTTGTTATGATTTTGTTGAGTGGACCTGTGATTTTGTGTTGAAGCACCTCTCAGTGCTACAGAAACTGAGGTATAAATCTATTTTAATGGTTATGCTTTAGATGTGGGTGTAACTTTTTTTATTTCTCAGGGGTGTTTTTCTTCTTCATTTGAATCATGGCTGATAATTGATACAATCAACATGCCAGGCTTCATATACTGTATAGAAGTATGAAAAACCATCTCTTATAGAAATTTAAAAGTCATATGGTCTAACCACTTCCTATTTTTGGTGGTTTTCTAATTGAACCTGACTTTTCTCCTTGTCTTCCTATGTGAATTTAGTGTTCCATTTCATTTACTTTTTAGTTTTTGTTATCAAATAACTTGCCATTCTAAATCACTATTTATGATTTCAAAATACACATTAGTAACATTTTAGTGTGCTGGATAATATAAAAGCATGCTTTCTTAATAAATCTTTCACTTTATCCTGTTGCCACTTTACTTTCCTGTATTAAATAAAATCAAATGGATCTCTTTTGTTATTTATTCATGTTGGTTGAAAACAAATTTAATATTCATCAGTACTGCATCATAAGTATATGTGTGCGTGTACAGATATTACATGTTTCCAGCTGAATATAGCTCCGGGGTCTTCATACATATTGCAATGCACTTCTGCATACAACTTTGAGCAAATAGGCTTTCTTATAATTGGAATTTCAACTCTCAAGGTTGCACAATTGAAATTATGCACGTAGACTCTATCTAATTATAACGGATGAAAATTATAAGAATAATGATTGATGGCATACATGTAAAGTACAGAAATGTGAAAGAAAGGCCCAAAATTATTCATTCCGTGGGTAGAACAAAACTTACTGTTTTGATGTCATATAATGGCATACACATATACTTATTAAAATAATGATGTATGACATACATGTGAAGCACAGAAATGTGTAAAAGTGACAAAAAAGTTGTTTTTCTTAACAAAAGAGTGACAAAAATTATTCATTTTGTAGTTGGTATAAATTTTACTGTTGCAATATTATTATTTGTCTTATTTATTTTGAGCTGGTCATCTGAGTATTGGCCCTAACACTCTATATTCTCGATAATTCTTGATACGAATGGAACAGGGGGAGTGTCATTATCCAATAGTTCATGTGAAATGCTGTTGTTGACTTTCTTTTGCATGCTGATGTGCATTTTTGACACATGTAGTGTCTAAATATCACTTAATTGATGTAATTAAGTTGTTTTAATATCTTTTACAGTGGATGCCCTGAGGAATGCAGGGAAGCTATAGCGTGTCTGATTATTGCTGCAGCAAGATTTTCTGATCTACCAGAGTTACGCGACCTTCGGCAAATATTTCAGGAGAGATACGGAAACTCTCTAGAATGTTATGTCAATCAAGAGGTCACTCTCAATTTTTTTTCTTTCCATATCATTACAATTATACATATTTACGACTTATTCCTGAACTGACTGATTAAATTGCTACTTATCAGTTTGCTGCAAATTTGAATCCGAAGTCTTTTACCTTGGAGCAGAAGGTTCGGTTGATGCAAGAGATTTCTTCGGAGTTTTCAATAAAGTGGGACTCCAAAGATTTTGAACTGAGGATGTCAAAATCCTCTGCTAAGGTGTTGTCCTCAGCCTTACATTGTTCTATTAGTTTTGTTTGTTAAATTTAAAAATTTCCCAATTCTTGATATAGTTACCGTTTTCCCTCATTATTTACATGATTGATTTAGTCATCGAGGTTTTTGTTTTCCTTTCGGGAAACCATTTTAACATATGCTTACATTTTTGTGTATATGCCAATACCAATAAAATACATTTGCTTGTGCAGGGCCACAATACTCATAAATCTGACCATTCAGTTGGGAAACCATTACAAGGCAAGTCTGAGATTTTGTTAGATAAAAGTCCTGACCATTCTAACGGTGGGCACAAATATCGGAATGGTAAGGAAGCTGCTGTCTCAAAAGCAGATGAAAATTATCTTCATCCCAAATCTAAGCTCCCTGAAAAAGGATTCAAGCCAATCACTAGGTATGATGAAGTCAATCTACCAAGGGATAGCCATGGCAATCCGTTGCTAGGAAAAGAAGAGCTTACTTCTCAGAAAGATGTCTATTGGAAGGAGGGTAGTATGCTAAAACCACCAATTGGATGTTCTTCTCAGGATAAGCGAGTGCACCAATTTGACGATGGTGATTTACATGATAGAAGGGGGAATGCCACCCGTGTGAGAGAAACCCCGGACACTGCCACTGCTAGGAAGTCTCCGAGTCATGCAGGATTTCAATCAAAGAACAATTTGAATGAACCATTTGCTGTTAATCATGGTGGACTACCTGATCTTGATAACTCTCAGAGAAAAGTTCAAAAGGATGAAACTCCTAAGGTAAAGCCGTACTACAGTAATGCCATCCCACCACCTTATGTAAAACCTAATTCTAAACTCAAGACGAGCACACAAAGAACTGAATTAGCATCTTCACATATTGACAATGATGGCATCCCAACAAATCCTTCAATACATCAAAAGCCTGACGCTGCTTCTACTACAGAGAAAATCCGATCAGGTTTGGATAATTCTGAACATGATTTGCAGGCCACTAGACATGCTCGACTGAGTAAACAGGATTATGAGAAAGAATCCCCTGTTCTTGGAGAGGCCAGAGAATTTCCTATATTAAAACAAAAATCTTCGAGGCGCAGGCACTCGAAATCACGGTCTACACACAATGATGCCAATAAAGAAGATGCTGAAGCTGCGAGAAAATCAAGGAGCAAGAGACGAGACGAATCAAAACGTGGCCTACAAATTTTGTTTGACGATGAGAAACATAAAAAAGACGAAGAAGAAAGGGTTATAGATAGATTGCTGATCCATTATAGCAAAAAGCCAACCATCAATGTGCCTGAGAAAGCAAGAAGAAGGTCTAAAAGTCGTCATGCACATCAAATGGATGATGGACCTGATAAGACACCAGATATGGTCCCTCGTGCACCTCGATCAGTTTCTCTTCCTCACGAACAATCACAAGAGATGGAAGTCAACAAAGTGTTTACTCGAGCTGCTTCGTTTCAGCCAGATAGATCAAAAGAAGCCCGACATGTGCATCCCAACTTACCCGATTATGATGATTTAGCTGCTAGGCTTGCGGCCTTGAGAGGAACATAA
Protein sequence

>MS.gene61400.t1

MLDGLLGRGFAAKCKSLIKLTKNRIDVIRRKRKATEKFLKNDIGDLLVNGLDVNAYGRAEGLIAELTLTSCYDFVEWTCDFVLKHLSVLQKLSGCPEECREAIACLIIAAARFSDLPELRDLRQIFQERYGNSLECYVNQEFAANLNPKSFTLEQKVRLMQEISSEFSIKWDSKDFELRMSKSSAKGHNTHKSDHSVGKPLQGKSEILLDKSPDHSNGGHKYRNGKEAAVSKADENYLHPKSKLPEKGFKPITRYDEVNLPRDSHGNPLLGKEELTSQKDVYWKEGSMLKPPIGCSSQDKRVHQFDDGDLHDRRGNATRVRETPDTATARKSPSHAGFQSKNNLNEPFAVNHGGLPDLDNSQRKVQKDETPKVKPYYSNAIPPPYVKPNSKLKTSTQRTELASSHIDNDGIPTNPSIHQKPDAASTTEKIRSGLDNSEHDLQATRHARLSKQDYEKESPVLGEAREFPILKQKSSRRRHSKSRSTHNDANKEDAEAARKSRSKRRDESKRGLQILFDDEKHKKDEEERVIDRLLIHYSKKPTINVPEKARRRSKSRHAHQMDDGPDKTPDMVPRAPRSVSLPHEQSQEMEVNKVFTRAASFQPDRSKEARHVHPNLPDYDDLAARLAALRGT