Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053208.t1 | PNY04515.1 | 69.2 | 260 | 25 | 1 | 1 | 205 | 5 | 264 | 3.10E-93 | 351.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053208.t1 | Q42381 | 26.7 | 382 | 74 | 4 | 20 | 196 | 3 | 383 | 1.6e-26 | 120.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053208.t1 | A0A2K3NNA9 | 69.2 | 260 | 25 | 1 | 1 | 205 | 5 | 264 | 2.2e-93 | 351.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053208 | MS.gene053211 | 0.966458 | 6.00E-126 | -1.69E-46 |
| MS.gene053208 | MS.gene65394 | 0.888254 | 6.95E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053208.t1 | MTR_4g007130 | 86.567 | 134 | 18 | 0 | 1 | 134 | 5 | 138 | 4.34e-73 | 227 |
| MS.gene053208.t1 | MTR_4g007130 | 95.652 | 92 | 3 | 1 | 115 | 205 | 301 | 392 | 6.13e-59 | 190 |
| MS.gene053208.t1 | MTR_4g095700 | 48.837 | 129 | 45 | 3 | 19 | 128 | 7 | 133 | 3.38e-27 | 107 |
| MS.gene053208.t1 | MTR_4g095700 | 52.000 | 75 | 35 | 1 | 114 | 188 | 310 | 383 | 3.51e-20 | 87.8 |
| MS.gene053208.t1 | MTR_5g015810 | 47.581 | 124 | 50 | 2 | 19 | 129 | 9 | 130 | 4.43e-27 | 106 |
| MS.gene053208.t1 | MTR_5g015810 | 49.333 | 75 | 37 | 1 | 114 | 188 | 302 | 375 | 3.49e-18 | 82.0 |
| MS.gene053208.t1 | MTR_4g122030 | 46.847 | 111 | 54 | 3 | 16 | 121 | 8 | 118 | 2.31e-22 | 93.2 |
| MS.gene053208.t1 | MTR_3g465010 | 50.000 | 110 | 49 | 4 | 14 | 119 | 1 | 108 | 3.60e-22 | 93.2 |
| MS.gene053208.t1 | MTR_3g465010 | 51.136 | 88 | 39 | 2 | 115 | 198 | 284 | 371 | 2.16e-21 | 90.9 |
| MS.gene053208.t1 | MTR_5g015810 | 49.333 | 75 | 37 | 1 | 114 | 188 | 185 | 258 | 2.18e-18 | 81.3 |
| MS.gene053208.t1 | MTR_5g015810 | 49.333 | 75 | 37 | 1 | 114 | 188 | 231 | 304 | 2.93e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053208.t1 | AT4G37580 | 57.391 | 115 | 34 | 2 | 20 | 119 | 3 | 117 | 3.54e-30 | 115 |
| MS.gene053208.t1 | AT4G37580 | 46.914 | 81 | 42 | 1 | 116 | 196 | 304 | 383 | 4.84e-19 | 84.3 |
| MS.gene053208.t1 | AT2G23060 | 52.066 | 121 | 36 | 2 | 21 | 119 | 7 | 127 | 3.21e-28 | 110 |
| MS.gene053208.t1 | AT2G23060 | 50.000 | 74 | 36 | 1 | 115 | 188 | 313 | 385 | 6.52e-20 | 87.0 |
| MS.gene053208.t1 | AT5G67430 | 46.957 | 115 | 42 | 3 | 19 | 121 | 8 | 115 | 1.83e-20 | 88.2 |
| MS.gene053208.t1 | AT5G67430 | 38.961 | 77 | 45 | 2 | 114 | 190 | 289 | 363 | 1.99e-13 | 68.6 |
| MS.gene053208.t1 | AT2G23060 | 50.000 | 74 | 36 | 1 | 115 | 188 | 179 | 251 | 2.78e-20 | 86.7 |
| MS.gene053208.t1 | AT4G37580 | 46.914 | 81 | 42 | 1 | 116 | 196 | 247 | 326 | 3.44e-19 | 84.3 |
| MS.gene053208.t1 | AT2G30090 | 44.444 | 99 | 52 | 2 | 21 | 119 | 15 | 110 | 4.04e-18 | 81.6 |
| MS.gene053208.t1 | AT2G30090 | 42.453 | 106 | 52 | 5 | 92 | 189 | 257 | 361 | 3.47e-17 | 79.3 |
| MS.gene053208.t1 | AT5G67430 | 38.961 | 77 | 45 | 2 | 114 | 190 | 224 | 298 | 1.51e-13 | 68.6 |
Find 52 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAACAGGTTGCAGAATA+TGG | 0.225082 | 4.2:-92510234 | MS.gene053208:intron |
| ATGTGGATTTGTACATAATA+TGG | 0.244584 | 4.2:-92508573 | MS.gene053208:CDS |
| TTCTCTTGTTACTGACCTAT+TGG | 0.257298 | 4.2:-92510716 | MS.gene053208:CDS |
| TTGAAAATAGAACCTGTGTT+TGG | 0.321183 | 4.2:+92510104 | None:intergenic |
| CACATTGGAGGAAATTATCT+TGG | 0.324781 | 4.2:-92508478 | MS.gene053208:CDS |
| AGAAGTTGTAGGAGTGATAA+GGG | 0.332414 | 4.2:-92510202 | MS.gene053208:CDS |
| TCTTCAACCTTCTTTGATGA+TGG | 0.344515 | 4.2:+92510835 | None:intergenic |
| TTTGGGATTTATCTAATGTA+TGG | 0.345767 | 4.2:-92508641 | MS.gene053208:CDS |
| TGTGGGATCACTTCTCTAAC+TGG | 0.350327 | 4.2:+92508497 | None:intergenic |
| GCTAGAGATGATGGTGGTTG+TGG | 0.374585 | 4.2:-92508551 | MS.gene053208:CDS |
| GGAGAAGAAGGAGAAGTTGT+AGG | 0.384818 | 4.2:-92510213 | MS.gene053208:CDS |
| TGAAAATAGAACCTGTGTTT+GGG | 0.387719 | 4.2:+92510105 | None:intergenic |
| TCTCTTGTTACTGACCTATT+GGG | 0.400220 | 4.2:-92510715 | MS.gene053208:CDS |
| GAGAAGTTGTAGGAGTGATA+AGG | 0.411618 | 4.2:-92510203 | MS.gene053208:CDS |
| TGAAGATAGCAGCTGAAACT+TGG | 0.430463 | 4.2:-92510864 | None:intergenic |
| TTGGAAAGGCTTTGTGAGGT+TGG | 0.433195 | 4.2:-92510754 | MS.gene053208:CDS |
| CTAGAGATGATGGTGGTTGT+GGG | 0.441863 | 4.2:-92508550 | MS.gene053208:CDS |
| CTTTCAATTACATGTTATGC+TGG | 0.442954 | 4.2:-92510668 | MS.gene053208:intron |
| AAGTGACGAATTCTGCATAT+AGG | 0.481918 | 4.2:+92510688 | None:intergenic |
| GTTGCAGAATATGGAGAAGA+AGG | 0.487530 | 4.2:-92510225 | MS.gene053208:CDS |
| CAACTTATGAAGTCATTATG+TGG | 0.488738 | 4.2:-92508590 | MS.gene053208:CDS |
| TACATTAGATAAATCCCAAA+TGG | 0.496017 | 4.2:+92508644 | None:intergenic |
| CATAATATGGCTAGAGATGA+TGG | 0.502811 | 4.2:-92508560 | MS.gene053208:CDS |
| ACATTGGAGGAAATTATCTT+GGG | 0.506598 | 4.2:-92508477 | MS.gene053208:CDS |
| TGCATATAGGATCACCCAAT+AGG | 0.510258 | 4.2:+92510701 | None:intergenic |
| GAGTCTTGAGCACATGAAGA+AGG | 0.531250 | 4.2:-92508432 | MS.gene053208:CDS |
| TTGTGACTGAAGTGAGTCAA+AGG | 0.543039 | 4.2:-92508523 | MS.gene053208:CDS |
| GAGGAAATTATCTTGGGCTG+AGG | 0.553326 | 4.2:-92508471 | MS.gene053208:CDS |
| TCTATAATTGTACCAATCTG+AGG | 0.555825 | 4.2:+92508385 | None:intergenic |
| CTTTGTGAGGTTGGACAAAG+AGG | 0.556865 | 4.2:-92510745 | MS.gene053208:CDS |
| TAGAGATGATGGTGGTTGTG+GGG | 0.570180 | 4.2:-92508549 | MS.gene053208:CDS |
| AAGATAATTTCCTCCAATGT+GGG | 0.570772 | 4.2:+92508480 | None:intergenic |
| TTACACATGGAGGGTAAATG+TGG | 0.575651 | 4.2:-92508617 | MS.gene053208:CDS |
| AAAATTGGAAAGGCTTTGTG+AGG | 0.581130 | 4.2:-92510758 | MS.gene053208:CDS |
| TGTGACTGAAGTGAGTCAAA+GGG | 0.585966 | 4.2:-92508522 | MS.gene053208:CDS |
| CAAGATAATTTCCTCCAATG+TGG | 0.604095 | 4.2:+92508479 | None:intergenic |
| AATAGGTCAGTAACAAGAGA+AGG | 0.604941 | 4.2:+92510718 | None:intergenic |
| GAGAAGTGATCCCACATTGG+AGG | 0.607408 | 4.2:-92508490 | MS.gene053208:CDS |
| ATGTATGGATTACACATGGA+GGG | 0.621344 | 4.2:-92508626 | MS.gene053208:CDS |
| CTATAATTGTACCAATCTGA+GGG | 0.622462 | 4.2:+92508386 | None:intergenic |
| GTGGGATCACTTCTCTAACT+GGG | 0.623674 | 4.2:+92508498 | None:intergenic |
| TTGACTCACTTCAGTCACAA+TGG | 0.630592 | 4.2:+92508526 | None:intergenic |
| GAAGTTGTAGGAGTGATAAG+GGG | 0.639263 | 4.2:-92510201 | MS.gene053208:CDS |
| TCTAATGTATGGATTACACA+TGG | 0.650598 | 4.2:-92508630 | MS.gene053208:CDS |
| GTGTGAAAACAGTTACAAGA+GGG | 0.661903 | 4.2:-92510176 | MS.gene053208:CDS |
| TTAGAGAAGTGATCCCACAT+TGG | 0.665411 | 4.2:-92508493 | MS.gene053208:CDS |
| TCAGAGTCTCTCCCAAACAC+AGG | 0.668522 | 4.2:-92510116 | MS.gene053208:intron |
| TGATGAAGAGAAACACAAAG+TGG | 0.670036 | 4.2:-92510788 | MS.gene053208:CDS |
| TATCTTGGGCTGAGGACATG+TGG | 0.676374 | 4.2:-92508463 | MS.gene053208:CDS |
| TGTGTGAAAACAGTTACAAG+AGG | 0.678804 | 4.2:-92510177 | MS.gene053208:CDS |
| AATGTATGGATTACACATGG+AGG | 0.692644 | 4.2:-92508627 | MS.gene053208:CDS |
| AATATGGCTAGAGATGATGG+TGG | 0.797279 | 4.2:-92508557 | MS.gene053208:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATAATTAATAGTTT+AGG | - | chr4.2:92508908-92508927 | MS.gene053208:intron | 10.0% |
| !!! | CTCTTTTTTATTTTATTTTA+TGG | - | chr4.2:92510842-92510861 | MS.gene053208:CDS | 10.0% |
| !! | CATTTATTTATTCATAAAAG+TGG | + | chr4.2:92509461-92509480 | None:intergenic | 15.0% |
| !! | TTCTTTGTAAGAAAAATAAA+AGG | - | chr4.2:92509160-92509179 | MS.gene053208:intron | 15.0% |
| !!! | TATTTTATTTTATGGGAATT+AGG | - | chr4.2:92510850-92510869 | MS.gene053208:CDS | 15.0% |
| !! | AAAAAATTCAAATATCTTCG+AGG | + | chr4.2:92508394-92508413 | None:intergenic | 20.0% |
| !! | AATAACTAAAAGATTGTCTT+TGG | - | chr4.2:92509727-92509746 | MS.gene053208:intron | 20.0% |
| !! | ATGAACCTTATAAAAACTAA+GGG | - | chr4.2:92509098-92509117 | MS.gene053208:intron | 20.0% |
| !! | TACTAAGAAACTATAGTAAA+TGG | - | chr4.2:92509280-92509299 | MS.gene053208:intron | 20.0% |
| !! | TATGAACCTTATAAAAACTA+AGG | - | chr4.2:92509097-92509116 | MS.gene053208:intron | 20.0% |
| !! | TTGTCAAACAAACTTAATTT+GGG | - | chr4.2:92510060-92510079 | MS.gene053208:intron | 20.0% |
| !! | TTTGTCAAACAAACTTAATT+TGG | - | chr4.2:92510059-92510078 | MS.gene053208:intron | 20.0% |
| !!! | AATATCCCTTAGTTTTTATA+AGG | + | chr4.2:92509106-92509125 | None:intergenic | 20.0% |
| !!! | ATTTTTGTATGCTTTTAGTT+AGG | + | chr4.2:92508896-92508915 | None:intergenic | 20.0% |
| !!! | TCAAGACTTTTCTTATTTTA+CGG | + | chr4.2:92509543-92509562 | None:intergenic | 20.0% |
| !!! | TTTTACAAACATTTGCATTT+TGG | + | chr4.2:92510738-92510757 | None:intergenic | 20.0% |
| ! | AAAATCAAATCTATGTCTCT+TGG | + | chr4.2:92510042-92510061 | None:intergenic | 25.0% |
| ! | AAATCAAATCTATGTCTCTT+GGG | + | chr4.2:92510041-92510060 | None:intergenic | 25.0% |
| ! | AACAAAAATTACTGATGAAG+AGG | + | chr4.2:92510592-92510611 | None:intergenic | 25.0% |
| ! | ACAAAATGTGATCCAAAAAA+TGG | - | chr4.2:92510114-92510133 | MS.gene053208:intron | 25.0% |
| ! | ACTTGCTTTACATTTAACAA+TGG | + | chr4.2:92510774-92510793 | None:intergenic | 25.0% |
| ! | AGAAACTATAGTAAATGGAT+AGG | - | chr4.2:92509285-92509304 | MS.gene053208:intron | 25.0% |
| ! | ATGTGGATTTGTACATAATA+TGG | - | chr4.2:92510377-92510396 | MS.gene053208:intron | 25.0% |
| ! | ATGTTATATTTGTTCCAAAC+AGG | - | chr4.2:92508703-92508722 | MS.gene053208:intron | 25.0% |
| ! | CAAGAATTAGAAGTAAGAAT+AGG | + | chr4.2:92509409-92509428 | None:intergenic | 25.0% |
| ! | CTAAAAACATTAGGAAATGA+AGG | + | chr4.2:92510285-92510304 | None:intergenic | 25.0% |
| ! | GATAGTATACATGAAAAATG+TGG | - | chr4.2:92510540-92510559 | MS.gene053208:intron | 25.0% |
| ! | GTTGCTACTAATTACTAATT+TGG | - | chr4.2:92510692-92510711 | MS.gene053208:CDS | 25.0% |
| ! | TAAAACAATAGAGAAAGAAG+TGG | - | chr4.2:92509125-92509144 | MS.gene053208:intron | 25.0% |
| ! | TACATTAGATAAATCCCAAA+TGG | + | chr4.2:92510309-92510328 | None:intergenic | 25.0% |
| ! | TATATCTATAGAGAGAAAGA+GGG | - | chr4.2:92510664-92510683 | MS.gene053208:intron | 25.0% |
| ! | TCTTAGTAAAGTAATCATAG+TGG | + | chr4.2:92509268-92509287 | None:intergenic | 25.0% |
| ! | TTAGGTTAATAGTTAGAGTT+TGG | - | chr4.2:92509659-92509678 | MS.gene053208:intron | 25.0% |
| ! | TTTGTGAACAAATTGATTGA+TGG | + | chr4.2:92509862-92509881 | None:intergenic | 25.0% |
| !! | CATTTTGTTAGGTCTTTTTT+AGG | + | chr4.2:92510102-92510121 | None:intergenic | 25.0% |
| !! | CTTCATTTCCTAATGTTTTT+AGG | - | chr4.2:92510283-92510302 | MS.gene053208:intron | 25.0% |
| !! | TCTTAACCTCTATTTTATAG+AGG | - | chr4.2:92509489-92509508 | MS.gene053208:intron | 25.0% |
| !! | TTTGGGATTTATCTAATGTA+TGG | - | chr4.2:92510309-92510328 | MS.gene053208:intron | 25.0% |
| !! | TTTTTGGATCACATTTTGTT+AGG | + | chr4.2:92510113-92510132 | None:intergenic | 25.0% |
| !!! | GTAAAACTTGCTTATGTTTT+AGG | - | chr4.2:92508809-92508828 | MS.gene053208:intron | 25.0% |
| AAGATAATTTCCTCCAATGT+GGG | + | chr4.2:92510473-92510492 | None:intergenic | 30.0% | |
| AATGTGAGTACTCAAAATTC+AGG | - | chr4.2:92509884-92509903 | MS.gene053208:intron | 30.0% | |
| ACACTTAATATTGCATAGCT+TGG | + | chr4.2:92510150-92510169 | None:intergenic | 30.0% | |
| ACATAAAATGACATGAGCTA+GGG | + | chr4.2:92510633-92510652 | None:intergenic | 30.0% | |
| ACATTGGAGGAAATTATCTT+GGG | - | chr4.2:92510473-92510492 | MS.gene053208:intron | 30.0% | |
| AGTATTTATGACTCAAGACA+CGG | + | chr4.2:92508651-92508670 | None:intergenic | 30.0% | |
| AGTTCTTCATCTAGACAATA+AGG | - | chr4.2:92509354-92509373 | MS.gene053208:intron | 30.0% | |
| ATATTAGTTGTCAGCATGTT+AGG | - | chr4.2:92509641-92509660 | MS.gene053208:intron | 30.0% | |
| CAACTTATGAAGTCATTATG+TGG | - | chr4.2:92510360-92510379 | MS.gene053208:intron | 30.0% | |
| CAACTTTCTCATACTTCATT+TGG | - | chr4.2:92509326-92509345 | MS.gene053208:intron | 30.0% | |
| CTAAATCATAATGTCGCATT+AGG | + | chr4.2:92508554-92508573 | None:intergenic | 30.0% | |
| CTAGTTTCACAGTTTGATAT+TGG | - | chr4.2:92508672-92508691 | MS.gene053208:intron | 30.0% | |
| CTATAATTGTACCAATCTGA+GGG | + | chr4.2:92510567-92510586 | None:intergenic | 30.0% | |
| CTATATCTATAGAGAGAAAG+AGG | - | chr4.2:92510663-92510682 | MS.gene053208:intron | 30.0% | |
| CTTTCAATTACATGTTATGC+TGG | - | chr4.2:92508282-92508301 | MS.gene053208:intron | 30.0% | |
| GAATCATGGTTGAAATAGTT+CGG | + | chr4.2:92509566-92509585 | None:intergenic | 30.0% | |
| GCATTAGGTATACATCAATA+TGG | + | chr4.2:92508539-92508558 | None:intergenic | 30.0% | |
| GTGTTCAAATTGCAAGTTAA+AGG | - | chr4.2:92510186-92510205 | MS.gene053208:CDS | 30.0% | |
| TAGTTGAACATTTAGAAGAG+TGG | - | chr4.2:92509782-92509801 | MS.gene053208:intron | 30.0% | |
| TATTAGATGAATGTATGCCA+TGG | - | chr4.2:92510250-92510269 | MS.gene053208:intron | 30.0% | |
| TATTGTCTAGATGAAGAACT+TGG | + | chr4.2:92509354-92509373 | None:intergenic | 30.0% | |
| TCCAAAGTTGTTCAAAAAGA+AGG | + | chr4.2:92509693-92509712 | None:intergenic | 30.0% | |
| TCCACAAAAAACCTTACTTT+AGG | - | chr4.2:92509377-92509396 | MS.gene053208:intron | 30.0% | |
| TCTATAATTGTACCAATCTG+AGG | + | chr4.2:92510568-92510587 | None:intergenic | 30.0% | |
| TCTCTTCCTCTATAAAATAG+AGG | + | chr4.2:92509498-92509517 | None:intergenic | 30.0% | |
| TGAAAATAGAACCTGTGTTT+GGG | + | chr4.2:92508848-92508867 | None:intergenic | 30.0% | |
| TTAATATTGCATAGCTTGGA+GGG | + | chr4.2:92510146-92510165 | None:intergenic | 30.0% | |
| TTGAAAATAGAACCTGTGTT+TGG | + | chr4.2:92508849-92508868 | None:intergenic | 30.0% | |
| ! | ACCTTCTTTTTGAACAACTT+TGG | - | chr4.2:92509689-92509708 | MS.gene053208:intron | 30.0% |
| ! | ACTTAATTTGGGCACATTTA+TGG | - | chr4.2:92510071-92510090 | MS.gene053208:intron | 30.0% |
| ! | TCTAATGTATGGATTACACA+TGG | - | chr4.2:92510320-92510339 | MS.gene053208:intron | 30.0% |
| ! | TTCTTTTTGAACAACTTTGG+AGG | - | chr4.2:92509692-92509711 | MS.gene053208:intron | 30.0% |
| !!! | AAGTTTTGAAATGACTTGTG+TGG | + | chr4.2:92509019-92509038 | None:intergenic | 30.0% |
| !!! | CTAATGTTTTTAGGCCATTT+GGG | - | chr4.2:92510292-92510311 | MS.gene053208:intron | 30.0% |
| !!! | TGTTAGGTCTTTTTTAGGTA+TGG | + | chr4.2:92510097-92510116 | None:intergenic | 30.0% |
| AACAATAGAGAAAGAAGTGG+TGG | - | chr4.2:92509128-92509147 | MS.gene053208:intron | 35.0% | |
| AAGAGTGGTGCAAACAAAAA+GGG | - | chr4.2:92509797-92509816 | MS.gene053208:intron | 35.0% | |
| AAGTGACGAATTCTGCATAT+AGG | + | chr4.2:92508265-92508284 | None:intergenic | 35.0% | |
| AATAGGTCAGTAACAAGAGA+AGG | + | chr4.2:92508235-92508254 | None:intergenic | 35.0% | |
| ACAATAGAGAAAGAAGTGGT+GGG | - | chr4.2:92509129-92509148 | MS.gene053208:intron | 35.0% | |
| ACACAACATGCATGTACAAA+TGG | + | chr4.2:92510219-92510238 | None:intergenic | 35.0% | |
| AGAAGTTGTAGGAGTGATAA+GGG | - | chr4.2:92508748-92508767 | MS.gene053208:intron | 35.0% | |
| ATAGGATGATGCCTAAAGTA+AGG | + | chr4.2:92509391-92509410 | None:intergenic | 35.0% | |
| CAAAGTGGCAGTAGAAAAAT+TGG | - | chr4.2:92508177-92508196 | MS.gene053208:intron | 35.0% | |
| CAAGATAATTTCCTCCAATG+TGG | + | chr4.2:92510474-92510493 | None:intergenic | 35.0% | |
| CAAGTTGTTATGTGCATTCT+TGG | - | chr4.2:92509058-92509077 | MS.gene053208:intron | 35.0% | |
| CACATAAAATGACATGAGCT+AGG | + | chr4.2:92510634-92510653 | None:intergenic | 35.0% | |
| CACATTGGAGGAAATTATCT+TGG | - | chr4.2:92510472-92510491 | MS.gene053208:intron | 35.0% | |
| CATAATATGGCTAGAGATGA+TGG | - | chr4.2:92510390-92510409 | MS.gene053208:intron | 35.0% | |
| CCAAATGGCCTAAAAACATT+AGG | + | chr4.2:92510294-92510313 | None:intergenic | 35.0% | |
| CTTAATATTGCATAGCTTGG+AGG | + | chr4.2:92510147-92510166 | None:intergenic | 35.0% | |
| GCAAAAACCATCATCAAAGA+AGG | - | chr4.2:92508108-92508127 | MS.gene053208:intron | 35.0% | |
| GCAAACATATGGTTGTATGT+CGG | + | chr4.2:92510003-92510022 | None:intergenic | 35.0% | |
| GCTATGCAATATTAAGTGTG+TGG | - | chr4.2:92510151-92510170 | MS.gene053208:CDS | 35.0% | |
| GTATTTATGACTCAAGACAC+GGG | + | chr4.2:92508650-92508669 | None:intergenic | 35.0% | |
| GTGTGAAAACAGTTACAAGA+GGG | - | chr4.2:92508774-92508793 | MS.gene053208:intron | 35.0% | |
| TATTTATGACTCAAGACACG+GGG | + | chr4.2:92508649-92508668 | None:intergenic | 35.0% | |
| TCTCTTGTTACTGACCTATT+GGG | - | chr4.2:92508235-92508254 | MS.gene053208:intron | 35.0% | |
| TCTTCAACCTTCTTTGATGA+TGG | + | chr4.2:92508118-92508137 | None:intergenic | 35.0% | |
| TCTTGGGAAAAATTCTGCAT+TGG | + | chr4.2:92510025-92510044 | None:intergenic | 35.0% | |
| TGATGAAGAGAAACACAAAG+TGG | - | chr4.2:92508162-92508181 | MS.gene053208:intron | 35.0% | |
| TGGAATGTATCGTTCTTGAA+TGG | - | chr4.2:92510712-92510731 | MS.gene053208:CDS | 35.0% | |
| TGGCAGTAGAAAAATTGGAA+AGG | - | chr4.2:92508182-92508201 | MS.gene053208:intron | 35.0% | |
| TGTGTGAAAACAGTTACAAG+AGG | - | chr4.2:92508773-92508792 | MS.gene053208:intron | 35.0% | |
| TTCTCTTGTTACTGACCTAT+TGG | - | chr4.2:92508234-92508253 | MS.gene053208:intron | 35.0% | |
| TTTGTACATGCATGTTGTGT+AGG | - | chr4.2:92510219-92510238 | MS.gene053208:CDS | 35.0% | |
| ! | AAAATTGGAAAGGCTTTGTG+AGG | - | chr4.2:92508192-92508211 | MS.gene053208:intron | 35.0% |
| ! | AATGTATGGATTACACATGG+AGG | - | chr4.2:92510323-92510342 | MS.gene053208:intron | 35.0% |
| ! | ATGTATGGATTACACATGGA+GGG | - | chr4.2:92510324-92510343 | MS.gene053208:intron | 35.0% |
| ! | ATTCTGCATTGGCAAACATA+TGG | + | chr4.2:92510014-92510033 | None:intergenic | 35.0% |
| ! | GAGAATTCGAGTTTGAATCA+TGG | + | chr4.2:92509580-92509599 | None:intergenic | 35.0% |
| !!! | CCTAATGTTTTTAGGCCATT+TGG | - | chr4.2:92510291-92510310 | MS.gene053208:intron | 35.0% |
| !!! | GCCTAAAGTAAGGTTTTTTG+TGG | + | chr4.2:92509381-92509400 | None:intergenic | 35.0% |
| !!! | GGAGGGAAAATACCATTTTT+TGG | + | chr4.2:92510129-92510148 | None:intergenic | 35.0% |
| AAAAATGTGGACCCTCAGAT+TGG | - | chr4.2:92510553-92510572 | MS.gene053208:intron | 40.0% | |
| AATAGAGAAAGAAGTGGTGG+GGG | - | chr4.2:92509131-92509150 | MS.gene053208:intron | 40.0% | |
| AATGAAGGTAACCTTAGCCA+TGG | + | chr4.2:92510270-92510289 | None:intergenic | 40.0% | |
| ACATACAGGAGATTTGGCAT+TGG | - | chr4.2:92509751-92509770 | MS.gene053208:intron | 40.0% | |
| AGAGTGGTGCAAACAAAAAG+GGG | - | chr4.2:92509798-92509817 | MS.gene053208:intron | 40.0% | |
| AGATTGTCTTTGGCACATAC+AGG | - | chr4.2:92509737-92509756 | MS.gene053208:intron | 40.0% | |
| AGCTAGGGTTAAAAATCACG+AGG | + | chr4.2:92510618-92510637 | None:intergenic | 40.0% | |
| AGGGGCTAAGTATGCATATA+TGG | - | chr4.2:92509816-92509835 | MS.gene053208:intron | 40.0% | |
| ATGAATGTATGCCATGGCTA+AGG | - | chr4.2:92510256-92510275 | MS.gene053208:intron | 40.0% | |
| CAATAGAGAAAGAAGTGGTG+GGG | - | chr4.2:92509130-92509149 | MS.gene053208:intron | 40.0% | |
| GAAGAGTGGTGCAAACAAAA+AGG | - | chr4.2:92509796-92509815 | MS.gene053208:intron | 40.0% | |
| GAAGTTGTAGGAGTGATAAG+GGG | - | chr4.2:92508749-92508768 | MS.gene053208:intron | 40.0% | |
| GAGAAGTTGTAGGAGTGATA+AGG | - | chr4.2:92508747-92508766 | MS.gene053208:intron | 40.0% | |
| GTTGCAGAATATGGAGAAGA+AGG | - | chr4.2:92508725-92508744 | MS.gene053208:intron | 40.0% | |
| TATAGAGAGAAAGAGGGTCT+TGG | - | chr4.2:92510670-92510689 | MS.gene053208:CDS | 40.0% | |
| TCCAAACAGGTTGCAGAATA+TGG | - | chr4.2:92508716-92508735 | MS.gene053208:intron | 40.0% | |
| TCCATATTCTGCAACCTGTT+TGG | + | chr4.2:92508720-92508739 | None:intergenic | 40.0% | |
| TGCATATAGGATCACCCAAT+AGG | + | chr4.2:92508252-92508271 | None:intergenic | 40.0% | |
| TGTGACTGAAGTGAGTCAAA+GGG | - | chr4.2:92510428-92510447 | MS.gene053208:intron | 40.0% | |
| TTACACATGGAGGGTAAATG+TGG | - | chr4.2:92510333-92510352 | MS.gene053208:intron | 40.0% | |
| TTAGAGAAGTGATCCCACAT+TGG | - | chr4.2:92510457-92510476 | MS.gene053208:intron | 40.0% | |
| TTGACTCACTTCAGTCACAA+TGG | + | chr4.2:92510427-92510446 | None:intergenic | 40.0% | |
| TTGTGACTGAAGTGAGTCAA+AGG | - | chr4.2:92510427-92510446 | MS.gene053208:intron | 40.0% | |
| TTTGGCACATACAGGAGATT+TGG | - | chr4.2:92509745-92509764 | MS.gene053208:intron | 40.0% | |
| ! | AATATGGCTAGAGATGATGG+TGG | - | chr4.2:92510393-92510412 | MS.gene053208:intron | 40.0% |
| ! | ACAGCAATGTTTGTGCTGAT+TGG | + | chr4.2:92509952-92509971 | None:intergenic | 40.0% |
| AGACACGGGGAGAAAATCAT+CGG | + | chr4.2:92508636-92508655 | None:intergenic | 45.0% | |
| CTTTGTGAGGTTGGACAAAG+AGG | - | chr4.2:92508205-92508224 | MS.gene053208:intron | 45.0% | |
| GAGGAAATTATCTTGGGCTG+AGG | - | chr4.2:92510479-92510498 | MS.gene053208:intron | 45.0% | |
| GAGTCTTGAGCACATGAAGA+AGG | - | chr4.2:92510518-92510537 | MS.gene053208:intron | 45.0% | |
| GGAGAAGAAGGAGAAGTTGT+AGG | - | chr4.2:92508737-92508756 | MS.gene053208:intron | 45.0% | |
| GTGGGATCACTTCTCTAACT+GGG | + | chr4.2:92510455-92510474 | None:intergenic | 45.0% | |
| GTTTACGAGATATCAGCTCG+TGG | + | chr4.2:92508438-92508457 | None:intergenic | 45.0% | |
| TGTGGGATCACTTCTCTAAC+TGG | + | chr4.2:92510456-92510475 | None:intergenic | 45.0% | |
| ! | TTGGAAAGGCTTTGTGAGGT+TGG | - | chr4.2:92508196-92508215 | MS.gene053208:intron | 45.0% |
| !! | CTAGAGATGATGGTGGTTGT+GGG | - | chr4.2:92510400-92510419 | MS.gene053208:intron | 45.0% |
| !! | TAGAGATGATGGTGGTTGTG+GGG | - | chr4.2:92510401-92510420 | MS.gene053208:intron | 45.0% |
| !!! | TCTTTTTTATTTTATTTTAT+GGG | - | chr4.2:92510843-92510862 | MS.gene053208:CDS | 5.0% |
| CATATGGTTGTATGTCGGCC+CGG | + | chr4.2:92509998-92510017 | None:intergenic | 50.0% | |
| GAGAAGTGATCCCACATTGG+AGG | - | chr4.2:92510460-92510479 | MS.gene053208:intron | 50.0% | |
| GGCTTGTAGTGAGCATGAAC+AGG | + | chr4.2:92509931-92509950 | None:intergenic | 50.0% | |
| TATCTTGGGCTGAGGACATG+TGG | - | chr4.2:92510487-92510506 | MS.gene053208:intron | 50.0% | |
| TCAGAGTCTCTCCCAAACAC+AGG | - | chr4.2:92508834-92508853 | MS.gene053208:intron | 50.0% | |
| TGTAGTGAGCATGAACAGGC+TGG | + | chr4.2:92509927-92509946 | None:intergenic | 50.0% | |
| !! | GCTAGAGATGATGGTGGTTG+TGG | - | chr4.2:92510399-92510418 | MS.gene053208:intron | 50.0% |
| CCAAGCGCGATGGTAGGCGA+AGG | + | chr4.2:92509975-92509994 | None:intergenic | 65.0% | |
| CCTTCGCCTACCATCGCGCT+TGG | - | chr4.2:92509972-92509991 | MS.gene053208:intron | 65.0% | |
| CGCCTACCATCGCGCTTGGC+CGG | - | chr4.2:92509976-92509995 | MS.gene053208:intron | 70.0% | |
| GCCTACCATCGCGCTTGGCC+GGG | - | chr4.2:92509977-92509996 | MS.gene053208:intron | 70.0% | |
| GCCCGGCCAAGCGCGATGGT+AGG | + | chr4.2:92509981-92510000 | None:intergenic | 75.0% | |
| ! | GTCGGCCCGGCCAAGCGCGA+TGG | + | chr4.2:92509985-92510004 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 92508091 | 92510881 | 92508091 | ID=MS.gene053208 |
| chr4.2 | mRNA | 92508091 | 92510881 | 92508091 | ID=MS.gene053208.t1;Parent=MS.gene053208 |
| chr4.2 | exon | 92510669 | 92510881 | 92510669 | ID=MS.gene053208.t1.exon1;Parent=MS.gene053208.t1 |
| chr4.2 | CDS | 92510669 | 92510881 | 92510669 | ID=cds.MS.gene053208.t1;Parent=MS.gene053208.t1 |
| chr4.2 | exon | 92510117 | 92510247 | 92510117 | ID=MS.gene053208.t1.exon2;Parent=MS.gene053208.t1 |
| chr4.2 | CDS | 92510117 | 92510247 | 92510117 | ID=cds.MS.gene053208.t1;Parent=MS.gene053208.t1 |
| chr4.2 | exon | 92508398 | 92508667 | 92508398 | ID=MS.gene053208.t1.exon3;Parent=MS.gene053208.t1 |
| chr4.2 | CDS | 92508398 | 92508667 | 92508398 | ID=cds.MS.gene053208.t1;Parent=MS.gene053208.t1 |
| chr4.2 | exon | 92508091 | 92508100 | 92508091 | ID=MS.gene053208.t1.exon4;Parent=MS.gene053208.t1 |
| chr4.2 | CDS | 92508091 | 92508100 | 92508091 | ID=cds.MS.gene053208.t1;Parent=MS.gene053208.t1 |
| Gene Sequence |
| Protein sequence |
