Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65394.t1 | PNY04515.1 | 87.4 | 285 | 32 | 1 | 1 | 285 | 1 | 281 | 1.20E-140 | 509.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65394.t1 | Q42381 | 33.1 | 408 | 120 | 8 | 24 | 285 | 3 | 403 | 8.0e-48 | 192.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65394.t1 | A0A2K3NNA9 | 87.4 | 285 | 32 | 1 | 1 | 285 | 1 | 281 | 8.8e-141 | 509.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene65394.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053208 | MS.gene65394 | 0.888254 | 6.95E-73 | -1.69E-46 |
| MS.gene053211 | MS.gene65394 | 0.927505 | 1.07E-91 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65394.t1 | MTR_4g007130 | 81.951 | 205 | 10 | 1 | 1 | 178 | 1 | 205 | 6.70e-111 | 327 |
| MS.gene65394.t1 | MTR_4g007130 | 88.618 | 123 | 9 | 3 | 164 | 285 | 291 | 409 | 7.35e-71 | 224 |
| MS.gene65394.t1 | MTR_4g095700 | 43.503 | 177 | 76 | 4 | 23 | 177 | 7 | 181 | 3.34e-37 | 136 |
| MS.gene65394.t1 | MTR_4g095700 | 45.082 | 122 | 56 | 5 | 164 | 285 | 301 | 411 | 3.42e-23 | 98.6 |
| MS.gene65394.t1 | MTR_5g015810 | 43.275 | 171 | 79 | 3 | 23 | 177 | 9 | 177 | 6.08e-36 | 133 |
| MS.gene65394.t1 | MTR_5g015810 | 43.396 | 106 | 53 | 3 | 179 | 284 | 304 | 402 | 6.64e-19 | 86.3 |
| MS.gene65394.t1 | MTR_4g122030 | 43.836 | 146 | 77 | 3 | 20 | 160 | 8 | 153 | 5.65e-30 | 116 |
| MS.gene65394.t1 | MTR_3g465010 | 40.212 | 189 | 80 | 5 | 18 | 175 | 1 | 187 | 1.39e-29 | 115 |
| MS.gene65394.t1 | MTR_3g465010 | 44.094 | 127 | 52 | 6 | 164 | 284 | 274 | 387 | 6.32e-22 | 94.7 |
| MS.gene65394.t1 | MTR_5g015810 | 43.396 | 106 | 53 | 3 | 179 | 284 | 187 | 285 | 4.84e-19 | 85.1 |
| MS.gene65394.t1 | MTR_5g015810 | 43.396 | 106 | 53 | 3 | 179 | 284 | 233 | 331 | 5.60e-19 | 85.5 |
| MS.gene65394.t1 | MTR_5g015810 | 36.975 | 119 | 35 | 2 | 88 | 166 | 1 | 119 | 1.07e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65394.t1 | AT4G37580 | 45.946 | 185 | 58 | 3 | 24 | 166 | 3 | 187 | 2.87e-40 | 144 |
| MS.gene65394.t1 | AT4G37580 | 41.085 | 129 | 65 | 5 | 157 | 285 | 286 | 403 | 4.94e-22 | 95.1 |
| MS.gene65394.t1 | AT2G23060 | 43.005 | 193 | 61 | 3 | 23 | 166 | 5 | 197 | 4.78e-38 | 139 |
| MS.gene65394.t1 | AT2G23060 | 39.535 | 129 | 67 | 4 | 157 | 285 | 296 | 413 | 3.40e-22 | 95.5 |
| MS.gene65394.t1 | AT5G67430 | 40.782 | 179 | 66 | 5 | 23 | 177 | 8 | 170 | 1.48e-29 | 115 |
| MS.gene65394.t1 | AT5G67430 | 35.965 | 114 | 60 | 6 | 173 | 284 | 283 | 385 | 1.33e-14 | 73.6 |
| MS.gene65394.t1 | AT2G30090 | 42.742 | 124 | 68 | 2 | 25 | 148 | 15 | 135 | 1.07e-23 | 99.8 |
| MS.gene65394.t1 | AT2G30090 | 42.478 | 113 | 49 | 5 | 179 | 284 | 282 | 385 | 7.09e-17 | 80.1 |
| MS.gene65394.t1 | AT2G23060 | 40.000 | 130 | 65 | 5 | 157 | 285 | 162 | 279 | 1.69e-22 | 94.7 |
| MS.gene65394.t1 | AT4G37580 | 41.085 | 129 | 65 | 5 | 157 | 285 | 229 | 346 | 3.13e-22 | 95.1 |
| MS.gene65394.t1 | AT4G37580 | 40.157 | 127 | 35 | 2 | 81 | 166 | 4 | 130 | 1.60e-17 | 81.6 |
| MS.gene65394.t1 | AT5G67430 | 35.965 | 114 | 60 | 6 | 173 | 284 | 218 | 320 | 1.05e-14 | 73.6 |
| MS.gene65394.t1 | AT5G67430 | 36.842 | 114 | 39 | 3 | 88 | 177 | 1 | 105 | 1.70e-11 | 63.9 |
Find 67 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAACAGGTTGCAGAATA+TGG | 0.225082 | 4.3:-88228018 | MS.gene65394:intron |
| ATGTGGATTTGTACATAATA+TGG | 0.244584 | 4.3:-88226357 | MS.gene65394:CDS |
| TTCTCTTGTTACTGACCTAT+TGG | 0.257298 | 4.3:-88228500 | MS.gene65394:CDS |
| GAAGAGTGGTGCAAACAAAA+AGG | 0.293479 | 4.3:-88226938 | MS.gene65394:CDS |
| TTGAAAATAGAACCTGTGTT+TGG | 0.321183 | 4.3:+88227888 | None:intergenic |
| CACATTGGAGGAAATTATCT+TGG | 0.324781 | 4.3:-88226262 | MS.gene65394:CDS |
| CGCCTACCATCGCGCTTGGC+CGG | 0.331091 | 4.3:-88226758 | MS.gene65394:CDS |
| AGAAGTTGTAGGAGTGATAA+GGG | 0.332414 | 4.3:-88227986 | MS.gene65394:CDS |
| TTTGGCACATACAGGAGATT+TGG | 0.340135 | 4.3:-88226989 | MS.gene65394:intron |
| TCTTCAACCTTCTTTGATGA+TGG | 0.344515 | 4.3:+88228619 | None:intergenic |
| TTTGGGATTTATCTAATGTA+TGG | 0.345767 | 4.3:-88226425 | MS.gene65394:CDS |
| TGTGGGATCACTTCTCTAAC+TGG | 0.350327 | 4.3:+88226281 | None:intergenic |
| GCTAGAGATGATGGTGGTTG+TGG | 0.374585 | 4.3:-88226335 | MS.gene65394:CDS |
| GGAGAAGAAGGAGAAGTTGT+AGG | 0.384818 | 4.3:-88227997 | MS.gene65394:CDS |
| TGAAAATAGAACCTGTGTTT+GGG | 0.387719 | 4.3:+88227889 | None:intergenic |
| TCTCTTGTTACTGACCTATT+GGG | 0.400220 | 4.3:-88228499 | MS.gene65394:CDS |
| GCCTACCATCGCGCTTGGCC+GGG | 0.411093 | 4.3:-88226757 | MS.gene65394:CDS |
| GAGAAGTTGTAGGAGTGATA+AGG | 0.411618 | 4.3:-88227987 | MS.gene65394:CDS |
| TGAAGATAGCAGCTGAAACT+TGG | 0.430463 | 4.3:-88228648 | MS.gene65394:CDS |
| TTGGAAAGGCTTTGTGAGGT+TGG | 0.433195 | 4.3:-88228538 | MS.gene65394:CDS |
| CTAGAGATGATGGTGGTTGT+GGG | 0.441863 | 4.3:-88226334 | MS.gene65394:CDS |
| CTTTCAATTACATGTTATGC+TGG | 0.442954 | 4.3:-88228452 | MS.gene65394:intron |
| ACAGCAATGTTTGTGCTGAT+TGG | 0.452904 | 4.3:+88226785 | None:intergenic |
| GTTGCAGAATATGGAGAAGA+AGG | 0.487530 | 4.3:-88228009 | MS.gene65394:CDS |
| CAACTTATGAAGTCATTATG+TGG | 0.488738 | 4.3:-88226374 | MS.gene65394:CDS |
| CCTTCGCCTACCATCGCGCT+TGG | 0.489542 | 4.3:-88226762 | MS.gene65394:CDS |
| TGATGAAGAGAAACACAAAA+TGG | 0.489544 | 4.3:-88228572 | MS.gene65394:CDS |
| TACATTAGATAAATCCCAAA+TGG | 0.496017 | 4.3:+88226428 | None:intergenic |
| GGCTTGTAGTGAGCATGAAC+AGG | 0.497937 | 4.3:+88226806 | None:intergenic |
| CATAATATGGCTAGAGATGA+TGG | 0.502811 | 4.3:-88226344 | MS.gene65394:CDS |
| ACATTGGAGGAAATTATCTT+GGG | 0.506598 | 4.3:-88226261 | MS.gene65394:CDS |
| TGCATACAGGATCACCCAAT+AGG | 0.528950 | 4.3:+88228485 | None:intergenic |
| GAGTCTTGAGCACATGAAGA+AGG | 0.531250 | 4.3:-88226216 | MS.gene65394:CDS |
| TGTAGTGAGCATGAACAGGC+TGG | 0.531502 | 4.3:+88226810 | None:intergenic |
| TTGTGACTGAAGTGAGTCAA+AGG | 0.543039 | 4.3:-88226307 | MS.gene65394:CDS |
| CATATGGTTGTATGTCGGCC+CGG | 0.545386 | 4.3:+88226739 | None:intergenic |
| AAGTGACGAATTCTGCATAC+AGG | 0.547501 | 4.3:+88228472 | None:intergenic |
| GTCGGCCCGGCCAAGCGCGA+TGG | 0.548720 | 4.3:+88226752 | None:intergenic |
| GAGGAAATTATCTTGGGCTG+AGG | 0.553326 | 4.3:-88226255 | MS.gene65394:CDS |
| TCTATAATTGTACCAATCTG+AGG | 0.555825 | 4.3:+88226169 | None:intergenic |
| CTTTGTGAGGTTGGACAAAG+AGG | 0.556865 | 4.3:-88228529 | MS.gene65394:CDS |
| TAGTTGAACATTTAGAAGAG+TGG | 0.560980 | 4.3:-88226952 | MS.gene65394:CDS |
| TAGAGATGATGGTGGTTGTG+GGG | 0.570180 | 4.3:-88226333 | MS.gene65394:CDS |
| AAGATAATTTCCTCCAATGT+GGG | 0.570772 | 4.3:+88226264 | None:intergenic |
| TTACACATGGAGGGTAAATG+TGG | 0.575651 | 4.3:-88226401 | MS.gene65394:CDS |
| AAAATTGGAAAGGCTTTGTG+AGG | 0.581130 | 4.3:-88228542 | MS.gene65394:CDS |
| TGTGACTGAAGTGAGTCAAA+GGG | 0.585966 | 4.3:-88226306 | MS.gene65394:CDS |
| CAAGATAATTTCCTCCAATG+TGG | 0.604095 | 4.3:+88226263 | None:intergenic |
| AATAGGTCAGTAACAAGAGA+AGG | 0.604941 | 4.3:+88228502 | None:intergenic |
| GAGAAGTGATCCCACATTGG+AGG | 0.607408 | 4.3:-88226274 | MS.gene65394:CDS |
| GCCCGGCCAAGCGCGATGGT+AGG | 0.614800 | 4.3:+88226756 | None:intergenic |
| ATGTATGGATTACACATGGA+GGG | 0.621344 | 4.3:-88226410 | MS.gene65394:CDS |
| CTATAATTGTACCAATCTGA+GGG | 0.622462 | 4.3:+88226170 | None:intergenic |
| GTGGGATCACTTCTCTAACT+GGG | 0.623674 | 4.3:+88226282 | None:intergenic |
| TTGACTCACTTCAGTCACAA+TGG | 0.630592 | 4.3:+88226310 | None:intergenic |
| GCAAACATATGGTTGTATGT+CGG | 0.634118 | 4.3:+88226734 | None:intergenic |
| CCAAGCGCGATGGTAGGCGA+AGG | 0.634299 | 4.3:+88226762 | None:intergenic |
| GAAGTTGTAGGAGTGATAAG+GGG | 0.639263 | 4.3:-88227985 | MS.gene65394:CDS |
| ACATACAGGAGATTTGGCAT+TGG | 0.644852 | 4.3:-88226983 | MS.gene65394:intron |
| TCTAATGTATGGATTACACA+TGG | 0.650598 | 4.3:-88226414 | MS.gene65394:CDS |
| GTGTGAAAACAGTTACAAGA+GGG | 0.661903 | 4.3:-88227960 | MS.gene65394:CDS |
| TTAGAGAAGTGATCCCACAT+TGG | 0.665411 | 4.3:-88226277 | MS.gene65394:CDS |
| TCAGAGTCTCTCCCAAACAC+AGG | 0.668522 | 4.3:-88227900 | MS.gene65394:intron |
| TATCTTGGGCTGAGGACATG+TGG | 0.676374 | 4.3:-88226247 | MS.gene65394:CDS |
| TGTGTGAAAACAGTTACAAG+AGG | 0.678804 | 4.3:-88227961 | MS.gene65394:CDS |
| AATGTATGGATTACACATGG+AGG | 0.692644 | 4.3:-88226411 | MS.gene65394:CDS |
| AATATGGCTAGAGATGATGG+TGG | 0.797279 | 4.3:-88226341 | MS.gene65394:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATAATTAATAGTTT+AGG | - | chr4.3:88226956-88226975 | MS.gene65394:CDS | 10.0% |
| !! | CATTTATTTATTCATAAAAG+TGG | + | chr4.3:88227509-88227528 | None:intergenic | 15.0% |
| !! | TTCTTTGTAAGAAAAATAAA+AGG | - | chr4.3:88227208-88227227 | MS.gene65394:intron | 15.0% |
| !! | AAAAAATTCAAATATCTTCG+AGG | + | chr4.3:88226442-88226461 | None:intergenic | 20.0% |
| !! | AATAACTAAAAGATTGTCTT+TGG | - | chr4.3:88227775-88227794 | MS.gene65394:intron | 20.0% |
| !! | ATGAACCTTATAAAAACTAA+GGG | - | chr4.3:88227146-88227165 | MS.gene65394:intron | 20.0% |
| !! | TACTAAGAAACTATAGTAAA+TGG | - | chr4.3:88227328-88227347 | MS.gene65394:intron | 20.0% |
| !! | TATGAACCTTATAAAAACTA+AGG | - | chr4.3:88227145-88227164 | MS.gene65394:intron | 20.0% |
| !! | TTGTCAAACAAACTTAATTT+GGG | - | chr4.3:88228108-88228127 | MS.gene65394:intron | 20.0% |
| !! | TTTGTCAAACAAACTTAATT+TGG | - | chr4.3:88228107-88228126 | MS.gene65394:intron | 20.0% |
| !!! | AATATCCCTTAGTTTTTATA+AGG | + | chr4.3:88227154-88227173 | None:intergenic | 20.0% |
| !!! | ATTTTTGTATGCTTTTAGTT+AGG | + | chr4.3:88226944-88226963 | None:intergenic | 20.0% |
| !!! | TCAAGACTTTTCTTATTTTA+CGG | + | chr4.3:88227591-88227610 | None:intergenic | 20.0% |
| ! | AAAATCAAATCTATGTCTCT+TGG | + | chr4.3:88228090-88228109 | None:intergenic | 25.0% |
| ! | AAATCAAATCTATGTCTCTT+GGG | + | chr4.3:88228089-88228108 | None:intergenic | 25.0% |
| ! | AACAAAAATTACTGATGAAG+AGG | + | chr4.3:88228640-88228659 | None:intergenic | 25.0% |
| ! | ACAAAATGTGATCCAAAAAA+TGG | - | chr4.3:88228162-88228181 | MS.gene65394:intron | 25.0% |
| ! | AGAAACTATAGTAAATGGAT+AGG | - | chr4.3:88227333-88227352 | MS.gene65394:intron | 25.0% |
| ! | ATGTGGATTTGTACATAATA+TGG | - | chr4.3:88228425-88228444 | MS.gene65394:intron | 25.0% |
| ! | ATGTTATATTTGTTCCAAAC+AGG | - | chr4.3:88226751-88226770 | MS.gene65394:CDS | 25.0% |
| ! | CAAGAATTAGAAGTAAGAAT+AGG | + | chr4.3:88227457-88227476 | None:intergenic | 25.0% |
| ! | CTAAAAACATTAGGAAATGA+AGG | + | chr4.3:88228333-88228352 | None:intergenic | 25.0% |
| ! | GATAGTATACATGAAAAATG+TGG | - | chr4.3:88228588-88228607 | MS.gene65394:CDS | 25.0% |
| ! | TAAAACAATAGAGAAAGAAG+TGG | - | chr4.3:88227173-88227192 | MS.gene65394:intron | 25.0% |
| ! | TACATTAGATAAATCCCAAA+TGG | + | chr4.3:88228357-88228376 | None:intergenic | 25.0% |
| ! | TCTTAGTAAAGTAATCATAG+TGG | + | chr4.3:88227316-88227335 | None:intergenic | 25.0% |
| ! | TTAGGTTAATAGTTAGAGTT+TGG | - | chr4.3:88227707-88227726 | MS.gene65394:intron | 25.0% |
| ! | TTTGTGAACAAATTGATTGA+TGG | + | chr4.3:88227910-88227929 | None:intergenic | 25.0% |
| !! | CATTTTGTTAGGTCTTTTTT+AGG | + | chr4.3:88228150-88228169 | None:intergenic | 25.0% |
| !! | CTTCATTTCCTAATGTTTTT+AGG | - | chr4.3:88228331-88228350 | MS.gene65394:intron | 25.0% |
| !! | TCTTAACCTCTATTTTATAG+AGG | - | chr4.3:88227537-88227556 | MS.gene65394:intron | 25.0% |
| !! | TTTGGGATTTATCTAATGTA+TGG | - | chr4.3:88228357-88228376 | MS.gene65394:intron | 25.0% |
| !! | TTTTTGGATCACATTTTGTT+AGG | + | chr4.3:88228161-88228180 | None:intergenic | 25.0% |
| !!! | GTAAAACTTGCTTATGTTTT+AGG | - | chr4.3:88226857-88226876 | MS.gene65394:intron | 25.0% |
| AAGATAATTTCCTCCAATGT+GGG | + | chr4.3:88228521-88228540 | None:intergenic | 30.0% | |
| AATGTGAGTACTCAAAATTC+AGG | - | chr4.3:88227932-88227951 | MS.gene65394:CDS | 30.0% | |
| ACATTGGAGGAAATTATCTT+GGG | - | chr4.3:88228521-88228540 | MS.gene65394:CDS | 30.0% | |
| AGTATTTATGACTCAAGACA+CGG | + | chr4.3:88226699-88226718 | None:intergenic | 30.0% | |
| AGTTCTTCATCTAGACAATA+AGG | - | chr4.3:88227402-88227421 | MS.gene65394:intron | 30.0% | |
| ATATTAGTTGTCAGCATGTT+AGG | - | chr4.3:88227689-88227708 | MS.gene65394:intron | 30.0% | |
| CAAAATGGCAGTAGAAAAAT+TGG | - | chr4.3:88226225-88226244 | MS.gene65394:CDS | 30.0% | |
| CAACTTATGAAGTCATTATG+TGG | - | chr4.3:88228408-88228427 | MS.gene65394:intron | 30.0% | |
| CAACTTTCTCATACTTCATT+TGG | - | chr4.3:88227374-88227393 | MS.gene65394:intron | 30.0% | |
| CTAAATCATAATGTCGCATT+AGG | + | chr4.3:88226602-88226621 | None:intergenic | 30.0% | |
| CTAGTTTCACAGTTTGATAT+TGG | - | chr4.3:88226720-88226739 | MS.gene65394:intron | 30.0% | |
| CTATAATTGTACCAATCTGA+GGG | + | chr4.3:88228615-88228634 | None:intergenic | 30.0% | |
| CTTTCAATTACATGTTATGC+TGG | - | chr4.3:88226330-88226349 | MS.gene65394:CDS | 30.0% | |
| GAATCATGGTTGAAATAGTT+CGG | + | chr4.3:88227614-88227633 | None:intergenic | 30.0% | |
| GCATTAGGTATACATCAATA+TGG | + | chr4.3:88226587-88226606 | None:intergenic | 30.0% | |
| GTGTTCAAATTGCAAGTTAA+AGG | - | chr4.3:88228234-88228253 | MS.gene65394:intron | 30.0% | |
| TAGTTGAACATTTAGAAGAG+TGG | - | chr4.3:88227830-88227849 | MS.gene65394:intron | 30.0% | |
| TATTAGATGAATGTATGCCA+TGG | - | chr4.3:88228298-88228317 | MS.gene65394:intron | 30.0% | |
| TATTGTCTAGATGAAGAACT+TGG | + | chr4.3:88227402-88227421 | None:intergenic | 30.0% | |
| TCCAAAGTTGTTCAAAAAGA+AGG | + | chr4.3:88227741-88227760 | None:intergenic | 30.0% | |
| TCCACAAAAAACCTTACTTT+AGG | - | chr4.3:88227425-88227444 | MS.gene65394:intron | 30.0% | |
| TCTATAATTGTACCAATCTG+AGG | + | chr4.3:88228616-88228635 | None:intergenic | 30.0% | |
| TCTCTTCCTCTATAAAATAG+AGG | + | chr4.3:88227546-88227565 | None:intergenic | 30.0% | |
| TGAAAATAGAACCTGTGTTT+GGG | + | chr4.3:88226896-88226915 | None:intergenic | 30.0% | |
| TGATGAAGAGAAACACAAAA+TGG | - | chr4.3:88226210-88226229 | MS.gene65394:CDS | 30.0% | |
| TTGAAAATAGAACCTGTGTT+TGG | + | chr4.3:88226897-88226916 | None:intergenic | 30.0% | |
| ! | ACCTTCTTTTTGAACAACTT+TGG | - | chr4.3:88227737-88227756 | MS.gene65394:intron | 30.0% |
| ! | ACTTAATTTGGGCACATTTA+TGG | - | chr4.3:88228119-88228138 | MS.gene65394:intron | 30.0% |
| ! | TCTAATGTATGGATTACACA+TGG | - | chr4.3:88228368-88228387 | MS.gene65394:intron | 30.0% |
| ! | TTCTTTTTGAACAACTTTGG+AGG | - | chr4.3:88227740-88227759 | MS.gene65394:intron | 30.0% |
| !!! | AAGTTTTGAAATGACTTGTG+TGG | + | chr4.3:88227067-88227086 | None:intergenic | 30.0% |
| !!! | CTAATGTTTTTAGGCCATTT+GGG | - | chr4.3:88228340-88228359 | MS.gene65394:intron | 30.0% |
| !!! | TGTTAGGTCTTTTTTAGGTA+TGG | + | chr4.3:88228145-88228164 | None:intergenic | 30.0% |
| AACAATAGAGAAAGAAGTGG+TGG | - | chr4.3:88227176-88227195 | MS.gene65394:intron | 35.0% | |
| AAGAGTGGTGCAAACAAAAA+GGG | - | chr4.3:88227845-88227864 | MS.gene65394:intron | 35.0% | |
| AATAGGTCAGTAACAAGAGA+AGG | + | chr4.3:88226283-88226302 | None:intergenic | 35.0% | |
| ACAATAGAGAAAGAAGTGGT+GGG | - | chr4.3:88227177-88227196 | MS.gene65394:intron | 35.0% | |
| ACACAACATGCATGTACAAA+TGG | + | chr4.3:88228267-88228286 | None:intergenic | 35.0% | |
| ACACTTAATAGTGCATAGCT+TGG | + | chr4.3:88228198-88228217 | None:intergenic | 35.0% | |
| AGAAGTTGTAGGAGTGATAA+GGG | - | chr4.3:88226796-88226815 | MS.gene65394:CDS | 35.0% | |
| ATAGGATGATGCCTAAAGTA+AGG | + | chr4.3:88227439-88227458 | None:intergenic | 35.0% | |
| CAAGATAATTTCCTCCAATG+TGG | + | chr4.3:88228522-88228541 | None:intergenic | 35.0% | |
| CAAGTTGTTATGTGCATTCT+TGG | - | chr4.3:88227106-88227125 | MS.gene65394:intron | 35.0% | |
| CACATTGGAGGAAATTATCT+TGG | - | chr4.3:88228520-88228539 | MS.gene65394:CDS | 35.0% | |
| CATAATATGGCTAGAGATGA+TGG | - | chr4.3:88228438-88228457 | MS.gene65394:intron | 35.0% | |
| CCAAATGGCCTAAAAACATT+AGG | + | chr4.3:88228342-88228361 | None:intergenic | 35.0% | |
| GCAAAAACCATCATCAAAGA+AGG | - | chr4.3:88226156-88226175 | MS.gene65394:CDS | 35.0% | |
| GCAAACATATGGTTGTATGT+CGG | + | chr4.3:88228051-88228070 | None:intergenic | 35.0% | |
| GTATTTATGACTCAAGACAC+GGG | + | chr4.3:88226698-88226717 | None:intergenic | 35.0% | |
| GTGTGAAAACAGTTACAAGA+GGG | - | chr4.3:88226822-88226841 | MS.gene65394:CDS | 35.0% | |
| TATTTATGACTCAAGACACG+GGG | + | chr4.3:88226697-88226716 | None:intergenic | 35.0% | |
| TCTCTTGTTACTGACCTATT+GGG | - | chr4.3:88226283-88226302 | MS.gene65394:CDS | 35.0% | |
| TCTTCAACCTTCTTTGATGA+TGG | + | chr4.3:88226166-88226185 | None:intergenic | 35.0% | |
| TCTTGGGAAAAATTCTGCAT+TGG | + | chr4.3:88228073-88228092 | None:intergenic | 35.0% | |
| TGGCAGTAGAAAAATTGGAA+AGG | - | chr4.3:88226230-88226249 | MS.gene65394:CDS | 35.0% | |
| TGTGTGAAAACAGTTACAAG+AGG | - | chr4.3:88226821-88226840 | MS.gene65394:CDS | 35.0% | |
| TTAATAGTGCATAGCTTGGA+GGG | + | chr4.3:88228194-88228213 | None:intergenic | 35.0% | |
| TTCTCTTGTTACTGACCTAT+TGG | - | chr4.3:88226282-88226301 | MS.gene65394:CDS | 35.0% | |
| TTTGTACATGCATGTTGTGT+AGG | - | chr4.3:88228267-88228286 | MS.gene65394:intron | 35.0% | |
| ! | AAAATTGGAAAGGCTTTGTG+AGG | - | chr4.3:88226240-88226259 | MS.gene65394:CDS | 35.0% |
| ! | AATGTATGGATTACACATGG+AGG | - | chr4.3:88228371-88228390 | MS.gene65394:intron | 35.0% |
| ! | ATGTATGGATTACACATGGA+GGG | - | chr4.3:88228372-88228391 | MS.gene65394:intron | 35.0% |
| ! | ATTCTGCATTGGCAAACATA+TGG | + | chr4.3:88228062-88228081 | None:intergenic | 35.0% |
| ! | GAGAATTCGAGTTTGAATCA+TGG | + | chr4.3:88227628-88227647 | None:intergenic | 35.0% |
| !!! | CCTAATGTTTTTAGGCCATT+TGG | - | chr4.3:88228339-88228358 | MS.gene65394:intron | 35.0% |
| !!! | GCCTAAAGTAAGGTTTTTTG+TGG | + | chr4.3:88227429-88227448 | None:intergenic | 35.0% |
| !!! | GGAGGGAAAATACCATTTTT+TGG | + | chr4.3:88228177-88228196 | None:intergenic | 35.0% |
| AAAAATGTGGACCCTCAGAT+TGG | - | chr4.3:88228601-88228620 | MS.gene65394:CDS | 40.0% | |
| AAGTGACGAATTCTGCATAC+AGG | + | chr4.3:88226313-88226332 | None:intergenic | 40.0% | |
| AATAGAGAAAGAAGTGGTGG+GGG | - | chr4.3:88227179-88227198 | MS.gene65394:intron | 40.0% | |
| AATGAAGGTAACCTTAGCCA+TGG | + | chr4.3:88228318-88228337 | None:intergenic | 40.0% | |
| ACATACAGGAGATTTGGCAT+TGG | - | chr4.3:88227799-88227818 | MS.gene65394:intron | 40.0% | |
| AGAGTGGTGCAAACAAAAAG+GGG | - | chr4.3:88227846-88227865 | MS.gene65394:intron | 40.0% | |
| AGATTGTCTTTGGCACATAC+AGG | - | chr4.3:88227785-88227804 | MS.gene65394:intron | 40.0% | |
| AGGGGCTAAGTATGCATATA+TGG | - | chr4.3:88227864-88227883 | MS.gene65394:intron | 40.0% | |
| ATGAATGTATGCCATGGCTA+AGG | - | chr4.3:88228304-88228323 | MS.gene65394:intron | 40.0% | |
| CAATAGAGAAAGAAGTGGTG+GGG | - | chr4.3:88227178-88227197 | MS.gene65394:intron | 40.0% | |
| CTTAATAGTGCATAGCTTGG+AGG | + | chr4.3:88228195-88228214 | None:intergenic | 40.0% | |
| GAAGAGTGGTGCAAACAAAA+AGG | - | chr4.3:88227844-88227863 | MS.gene65394:intron | 40.0% | |
| GAAGTTGTAGGAGTGATAAG+GGG | - | chr4.3:88226797-88226816 | MS.gene65394:CDS | 40.0% | |
| GAGAAGTTGTAGGAGTGATA+AGG | - | chr4.3:88226795-88226814 | MS.gene65394:CDS | 40.0% | |
| GCTATGCACTATTAAGTGTG+TGG | - | chr4.3:88228199-88228218 | MS.gene65394:intron | 40.0% | |
| GTTGCAGAATATGGAGAAGA+AGG | - | chr4.3:88226773-88226792 | MS.gene65394:CDS | 40.0% | |
| TCCAAACAGGTTGCAGAATA+TGG | - | chr4.3:88226764-88226783 | MS.gene65394:CDS | 40.0% | |
| TCCATATTCTGCAACCTGTT+TGG | + | chr4.3:88226768-88226787 | None:intergenic | 40.0% | |
| TGAAGATAGCAGCTGAAACT+TGG | - | chr4.3:88226134-88226153 | MS.gene65394:CDS | 40.0% | |
| TGTGACTGAAGTGAGTCAAA+GGG | - | chr4.3:88228476-88228495 | MS.gene65394:CDS | 40.0% | |
| TTACACATGGAGGGTAAATG+TGG | - | chr4.3:88228381-88228400 | MS.gene65394:intron | 40.0% | |
| TTAGAGAAGTGATCCCACAT+TGG | - | chr4.3:88228505-88228524 | MS.gene65394:CDS | 40.0% | |
| TTGACTCACTTCAGTCACAA+TGG | + | chr4.3:88228475-88228494 | None:intergenic | 40.0% | |
| TTGTGACTGAAGTGAGTCAA+AGG | - | chr4.3:88228475-88228494 | MS.gene65394:CDS | 40.0% | |
| TTTGGCACATACAGGAGATT+TGG | - | chr4.3:88227793-88227812 | MS.gene65394:intron | 40.0% | |
| ! | AATATGGCTAGAGATGATGG+TGG | - | chr4.3:88228441-88228460 | MS.gene65394:intron | 40.0% |
| ! | ACAGCAATGTTTGTGCTGAT+TGG | + | chr4.3:88228000-88228019 | None:intergenic | 40.0% |
| AGACACGGGGAGAAAATCAT+CGG | + | chr4.3:88226684-88226703 | None:intergenic | 45.0% | |
| CTTTGTGAGGTTGGACAAAG+AGG | - | chr4.3:88226253-88226272 | MS.gene65394:CDS | 45.0% | |
| GAGGAAATTATCTTGGGCTG+AGG | - | chr4.3:88228527-88228546 | MS.gene65394:CDS | 45.0% | |
| GAGTCTTGAGCACATGAAGA+AGG | - | chr4.3:88228566-88228585 | MS.gene65394:CDS | 45.0% | |
| GGAGAAGAAGGAGAAGTTGT+AGG | - | chr4.3:88226785-88226804 | MS.gene65394:CDS | 45.0% | |
| GTGGGATCACTTCTCTAACT+GGG | + | chr4.3:88228503-88228522 | None:intergenic | 45.0% | |
| GTTTACGAGATATCAGCTCG+TGG | + | chr4.3:88226486-88226505 | None:intergenic | 45.0% | |
| TGCATACAGGATCACCCAAT+AGG | + | chr4.3:88226300-88226319 | None:intergenic | 45.0% | |
| TGTGGGATCACTTCTCTAAC+TGG | + | chr4.3:88228504-88228523 | None:intergenic | 45.0% | |
| ! | TTGGAAAGGCTTTGTGAGGT+TGG | - | chr4.3:88226244-88226263 | MS.gene65394:CDS | 45.0% |
| !! | CTAGAGATGATGGTGGTTGT+GGG | - | chr4.3:88228448-88228467 | MS.gene65394:intron | 45.0% |
| !! | TAGAGATGATGGTGGTTGTG+GGG | - | chr4.3:88228449-88228468 | MS.gene65394:intron | 45.0% |
| CATATGGTTGTATGTCGGCC+CGG | + | chr4.3:88228046-88228065 | None:intergenic | 50.0% | |
| GAGAAGTGATCCCACATTGG+AGG | - | chr4.3:88228508-88228527 | MS.gene65394:CDS | 50.0% | |
| GGCTTGTAGTGAGCATGAAC+AGG | + | chr4.3:88227979-88227998 | None:intergenic | 50.0% | |
| TATCTTGGGCTGAGGACATG+TGG | - | chr4.3:88228535-88228554 | MS.gene65394:CDS | 50.0% | |
| TCAGAGTCTCTCCCAAACAC+AGG | - | chr4.3:88226882-88226901 | MS.gene65394:intron | 50.0% | |
| TGTAGTGAGCATGAACAGGC+TGG | + | chr4.3:88227975-88227994 | None:intergenic | 50.0% | |
| !! | GCTAGAGATGATGGTGGTTG+TGG | - | chr4.3:88228447-88228466 | MS.gene65394:intron | 50.0% |
| CCAAGCGCGATGGTAGGCGA+AGG | + | chr4.3:88228023-88228042 | None:intergenic | 65.0% | |
| CCTTCGCCTACCATCGCGCT+TGG | - | chr4.3:88228020-88228039 | MS.gene65394:intron | 65.0% | |
| CGCCTACCATCGCGCTTGGC+CGG | - | chr4.3:88228024-88228043 | MS.gene65394:intron | 70.0% | |
| GCCTACCATCGCGCTTGGCC+GGG | - | chr4.3:88228025-88228044 | MS.gene65394:intron | 70.0% | |
| GCCCGGCCAAGCGCGATGGT+AGG | + | chr4.3:88228029-88228048 | None:intergenic | 75.0% | |
| ! | GTCGGCCCGGCCAAGCGCGA+TGG | + | chr4.3:88228033-88228052 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 88226127 | 88228677 | 88226127 | ID=MS.gene65394 |
| chr4.3 | mRNA | 88226127 | 88228677 | 88226127 | ID=MS.gene65394.t1;Parent=MS.gene65394 |
| chr4.3 | exon | 88228453 | 88228677 | 88228453 | ID=MS.gene65394.t1.exon1;Parent=MS.gene65394.t1 |
| chr4.3 | CDS | 88228453 | 88228677 | 88228453 | ID=cds.MS.gene65394.t1;Parent=MS.gene65394.t1 |
| chr4.3 | exon | 88227901 | 88228031 | 88227901 | ID=MS.gene65394.t1.exon2;Parent=MS.gene65394.t1 |
| chr4.3 | CDS | 88227901 | 88228031 | 88227901 | ID=cds.MS.gene65394.t1;Parent=MS.gene65394.t1 |
| chr4.3 | exon | 88226932 | 88226997 | 88226932 | ID=MS.gene65394.t1.exon3;Parent=MS.gene65394.t1 |
| chr4.3 | CDS | 88226932 | 88226997 | 88226932 | ID=cds.MS.gene65394.t1;Parent=MS.gene65394.t1 |
| chr4.3 | exon | 88226740 | 88226850 | 88226740 | ID=MS.gene65394.t1.exon4;Parent=MS.gene65394.t1 |
| chr4.3 | CDS | 88226740 | 88226850 | 88226740 | ID=cds.MS.gene65394.t1;Parent=MS.gene65394.t1 |
| chr4.3 | exon | 88226127 | 88226451 | 88226127 | ID=MS.gene65394.t1.exon5;Parent=MS.gene65394.t1 |
| chr4.3 | CDS | 88226127 | 88226451 | 88226127 | ID=cds.MS.gene65394.t1;Parent=MS.gene65394.t1 |
| Gene Sequence |
| Protein sequence |
