Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053211.t1 | PNY04515.1 | 69.7 | 264 | 25 | 1 | 1 | 209 | 1 | 264 | 3.40E-95 | 357.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053211.t1 | Q42381 | 26.7 | 382 | 74 | 4 | 24 | 200 | 3 | 383 | 1.3e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053211.t1 | A0A2K3NNA9 | 69.7 | 264 | 25 | 1 | 1 | 209 | 1 | 264 | 2.4e-95 | 357.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053208 | MS.gene053211 | 0.966458 | 6.00E-126 | -1.69E-46 |
| MS.gene053211 | MS.gene65394 | 0.927505 | 1.07E-91 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053211.t1 | MTR_4g007130 | 86.957 | 138 | 18 | 0 | 1 | 138 | 1 | 138 | 8.57e-76 | 234 |
| MS.gene053211.t1 | MTR_4g007130 | 95.652 | 92 | 3 | 1 | 119 | 209 | 301 | 392 | 5.72e-59 | 191 |
| MS.gene053211.t1 | MTR_4g095700 | 48.837 | 129 | 45 | 3 | 23 | 132 | 7 | 133 | 3.37e-27 | 107 |
| MS.gene053211.t1 | MTR_4g095700 | 52.000 | 75 | 35 | 1 | 118 | 192 | 310 | 383 | 3.43e-20 | 87.8 |
| MS.gene053211.t1 | MTR_5g015810 | 47.581 | 124 | 50 | 2 | 23 | 133 | 9 | 130 | 5.46e-27 | 106 |
| MS.gene053211.t1 | MTR_5g015810 | 49.333 | 75 | 37 | 1 | 118 | 192 | 302 | 375 | 3.93e-18 | 82.0 |
| MS.gene053211.t1 | MTR_4g122030 | 46.847 | 111 | 54 | 3 | 20 | 125 | 8 | 118 | 2.71e-22 | 93.2 |
| MS.gene053211.t1 | MTR_3g465010 | 50.000 | 110 | 49 | 4 | 18 | 123 | 1 | 108 | 3.55e-22 | 93.2 |
| MS.gene053211.t1 | MTR_3g465010 | 51.136 | 88 | 39 | 2 | 119 | 202 | 284 | 371 | 2.09e-21 | 91.3 |
| MS.gene053211.t1 | MTR_5g015810 | 49.333 | 75 | 37 | 1 | 118 | 192 | 185 | 258 | 2.33e-18 | 81.6 |
| MS.gene053211.t1 | MTR_5g015810 | 49.333 | 75 | 37 | 1 | 118 | 192 | 231 | 304 | 2.96e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053211.t1 | AT4G37580 | 57.391 | 115 | 34 | 2 | 24 | 123 | 3 | 117 | 3.19e-30 | 115 |
| MS.gene053211.t1 | AT4G37580 | 46.914 | 81 | 42 | 1 | 120 | 200 | 304 | 383 | 4.44e-19 | 84.7 |
| MS.gene053211.t1 | AT2G23060 | 52.066 | 121 | 36 | 2 | 25 | 123 | 7 | 127 | 3.07e-28 | 110 |
| MS.gene053211.t1 | AT2G23060 | 50.000 | 74 | 36 | 1 | 119 | 192 | 313 | 385 | 6.24e-20 | 87.0 |
| MS.gene053211.t1 | AT5G67430 | 46.957 | 115 | 42 | 3 | 23 | 125 | 8 | 115 | 1.99e-20 | 88.6 |
| MS.gene053211.t1 | AT5G67430 | 38.961 | 77 | 45 | 2 | 118 | 194 | 289 | 363 | 2.07e-13 | 68.6 |
| MS.gene053211.t1 | AT2G23060 | 47.500 | 80 | 41 | 1 | 119 | 198 | 179 | 257 | 2.61e-20 | 86.7 |
| MS.gene053211.t1 | AT4G37580 | 46.914 | 81 | 42 | 1 | 120 | 200 | 247 | 326 | 3.02e-19 | 84.7 |
| MS.gene053211.t1 | AT2G30090 | 44.444 | 99 | 52 | 2 | 25 | 123 | 15 | 110 | 4.29e-18 | 82.0 |
| MS.gene053211.t1 | AT2G30090 | 42.453 | 106 | 52 | 5 | 96 | 193 | 257 | 361 | 3.82e-17 | 79.3 |
| MS.gene053211.t1 | AT5G67430 | 38.961 | 77 | 45 | 2 | 118 | 194 | 224 | 298 | 1.43e-13 | 68.6 |
Find 52 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAACAGGTTGCAGAATA+TGG | 0.225082 | 4.3:-88274238 | MS.gene053211:intron |
| ATGTGGATTTGTACATAATA+TGG | 0.244584 | 4.3:-88272577 | MS.gene053211:CDS |
| TTCTCTTGTTACTGACCTAT+TGG | 0.257298 | 4.3:-88274720 | MS.gene053211:CDS |
| TTGAAAATAGAACCTGTGTT+TGG | 0.321183 | 4.3:+88274108 | None:intergenic |
| CACATTGGAGGAAATTATCT+TGG | 0.324781 | 4.3:-88272482 | MS.gene053211:CDS |
| AGAAGTTGTAGGAGTGATAA+GGG | 0.332414 | 4.3:-88274206 | MS.gene053211:CDS |
| TCTTCAACCTTCTTTGATGA+TGG | 0.344515 | 4.3:+88274839 | None:intergenic |
| TTTGGGATTTATCTAATGTA+TGG | 0.345767 | 4.3:-88272645 | MS.gene053211:CDS |
| TGTGGGATCACTTCTCTAAC+TGG | 0.350327 | 4.3:+88272501 | None:intergenic |
| GCTAGAGATGATGGTGGTTG+TGG | 0.374585 | 4.3:-88272555 | MS.gene053211:CDS |
| GGAGAAGAAGGAGAAGTTGT+AGG | 0.384818 | 4.3:-88274217 | MS.gene053211:CDS |
| TGAAAATAGAACCTGTGTTT+GGG | 0.387719 | 4.3:+88274109 | None:intergenic |
| TCTCTTGTTACTGACCTATT+GGG | 0.400220 | 4.3:-88274719 | MS.gene053211:CDS |
| GAGAAGTTGTAGGAGTGATA+AGG | 0.411618 | 4.3:-88274207 | MS.gene053211:CDS |
| TGAAGATAGCAGCTGAAACT+TGG | 0.430463 | 4.3:-88274868 | MS.gene053211:CDS |
| TTGGAAAGGCTTTGTGAGGT+TGG | 0.433195 | 4.3:-88274758 | MS.gene053211:CDS |
| CTAGAGATGATGGTGGTTGT+GGG | 0.441863 | 4.3:-88272554 | MS.gene053211:CDS |
| CTTTCAATTACATGTTATGC+TGG | 0.442954 | 4.3:-88274672 | MS.gene053211:intron |
| AAGTGACGAATTCTGCATAT+AGG | 0.481918 | 4.3:+88274692 | None:intergenic |
| GTTGCAGAATATGGAGAAGA+AGG | 0.487530 | 4.3:-88274229 | MS.gene053211:CDS |
| CAACTTATGAAGTCATTATG+TGG | 0.488738 | 4.3:-88272594 | MS.gene053211:CDS |
| TACATTAGATAAATCCCAAA+TGG | 0.496017 | 4.3:+88272648 | None:intergenic |
| CATAATATGGCTAGAGATGA+TGG | 0.502811 | 4.3:-88272564 | MS.gene053211:CDS |
| ACATTGGAGGAAATTATCTT+GGG | 0.506598 | 4.3:-88272481 | MS.gene053211:CDS |
| TGCATATAGGATCACCCAAT+AGG | 0.510258 | 4.3:+88274705 | None:intergenic |
| GAGTCTTGAGCACATGAAGA+AGG | 0.531250 | 4.3:-88272436 | MS.gene053211:CDS |
| TTGTGACTGAAGTGAGTCAA+AGG | 0.543039 | 4.3:-88272527 | MS.gene053211:CDS |
| GAGGAAATTATCTTGGGCTG+AGG | 0.553326 | 4.3:-88272475 | MS.gene053211:CDS |
| TCTATAATTGTACCAATCTG+AGG | 0.555825 | 4.3:+88272389 | None:intergenic |
| CTTTGTGAGGTTGGACAAAG+AGG | 0.556865 | 4.3:-88274749 | MS.gene053211:CDS |
| TAGAGATGATGGTGGTTGTG+GGG | 0.570180 | 4.3:-88272553 | MS.gene053211:CDS |
| AAGATAATTTCCTCCAATGT+GGG | 0.570772 | 4.3:+88272484 | None:intergenic |
| TTACACATGGAGGGTAAATG+TGG | 0.575651 | 4.3:-88272621 | MS.gene053211:CDS |
| AAAATTGGAAAGGCTTTGTG+AGG | 0.581130 | 4.3:-88274762 | MS.gene053211:CDS |
| TGTGACTGAAGTGAGTCAAA+GGG | 0.585966 | 4.3:-88272526 | MS.gene053211:CDS |
| CAAGATAATTTCCTCCAATG+TGG | 0.604095 | 4.3:+88272483 | None:intergenic |
| AATAGGTCAGTAACAAGAGA+AGG | 0.604941 | 4.3:+88274722 | None:intergenic |
| GAGAAGTGATCCCACATTGG+AGG | 0.607408 | 4.3:-88272494 | MS.gene053211:CDS |
| ATGTATGGATTACACATGGA+GGG | 0.621344 | 4.3:-88272630 | MS.gene053211:CDS |
| CTATAATTGTACCAATCTGA+GGG | 0.622462 | 4.3:+88272390 | None:intergenic |
| GTGGGATCACTTCTCTAACT+GGG | 0.623674 | 4.3:+88272502 | None:intergenic |
| TTGACTCACTTCAGTCACAA+TGG | 0.630592 | 4.3:+88272530 | None:intergenic |
| GAAGTTGTAGGAGTGATAAG+GGG | 0.639263 | 4.3:-88274205 | MS.gene053211:CDS |
| TCTAATGTATGGATTACACA+TGG | 0.650598 | 4.3:-88272634 | MS.gene053211:CDS |
| GTGTGAAAACAGTTACAAGA+GGG | 0.661903 | 4.3:-88274180 | MS.gene053211:CDS |
| TTAGAGAAGTGATCCCACAT+TGG | 0.665411 | 4.3:-88272497 | MS.gene053211:CDS |
| TCAGAGTCTCTCCCAAACAC+AGG | 0.668522 | 4.3:-88274120 | MS.gene053211:intron |
| TGATGAAGAGAAACACAAAG+TGG | 0.670036 | 4.3:-88274792 | MS.gene053211:CDS |
| TATCTTGGGCTGAGGACATG+TGG | 0.676374 | 4.3:-88272467 | MS.gene053211:CDS |
| TGTGTGAAAACAGTTACAAG+AGG | 0.678804 | 4.3:-88274181 | MS.gene053211:CDS |
| AATGTATGGATTACACATGG+AGG | 0.692644 | 4.3:-88272631 | MS.gene053211:CDS |
| AATATGGCTAGAGATGATGG+TGG | 0.797279 | 4.3:-88272561 | MS.gene053211:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATAATTAATAGTTT+AGG | - | chr4.3:88272924-88272943 | MS.gene053211:intron | 10.0% |
| !!! | CTCTTTTTTATTTTATTTTA+TGG | - | chr4.3:88274858-88274877 | MS.gene053211:CDS | 10.0% |
| !! | CATTTATTTATTCATAAAAG+TGG | + | chr4.3:88273477-88273496 | None:intergenic | 15.0% |
| !! | TTCTTTGTAAGAAAAATAAA+AGG | - | chr4.3:88273176-88273195 | MS.gene053211:intron | 15.0% |
| !!! | TATTTTATTTTATGGGAATT+AGG | - | chr4.3:88274866-88274885 | MS.gene053211:CDS | 15.0% |
| !! | AAAAAATTCAAATATCTTCG+AGG | + | chr4.3:88272410-88272429 | None:intergenic | 20.0% |
| !! | AATAACTAAAAGATTGTCTT+TGG | - | chr4.3:88273743-88273762 | MS.gene053211:intron | 20.0% |
| !! | ATGAACCTTATAAAAACTAA+GGG | - | chr4.3:88273114-88273133 | MS.gene053211:intron | 20.0% |
| !! | TACTAAGAAACTATAGTAAA+TGG | - | chr4.3:88273296-88273315 | MS.gene053211:intron | 20.0% |
| !! | TATGAACCTTATAAAAACTA+AGG | - | chr4.3:88273113-88273132 | MS.gene053211:intron | 20.0% |
| !! | TTGTCAAACAAACTTAATTT+GGG | - | chr4.3:88274076-88274095 | MS.gene053211:intron | 20.0% |
| !! | TTTGTCAAACAAACTTAATT+TGG | - | chr4.3:88274075-88274094 | MS.gene053211:intron | 20.0% |
| !!! | AATATCCCTTAGTTTTTATA+AGG | + | chr4.3:88273122-88273141 | None:intergenic | 20.0% |
| !!! | ATTTTTGTATGCTTTTAGTT+AGG | + | chr4.3:88272912-88272931 | None:intergenic | 20.0% |
| !!! | TCAAGACTTTTCTTATTTTA+CGG | + | chr4.3:88273559-88273578 | None:intergenic | 20.0% |
| !!! | TTTTACAAACATTTGCATTT+TGG | + | chr4.3:88274754-88274773 | None:intergenic | 20.0% |
| ! | AAAATCAAATCTATGTCTCT+TGG | + | chr4.3:88274058-88274077 | None:intergenic | 25.0% |
| ! | AAATCAAATCTATGTCTCTT+GGG | + | chr4.3:88274057-88274076 | None:intergenic | 25.0% |
| ! | AACAAAAATTACTGATGAAG+AGG | + | chr4.3:88274608-88274627 | None:intergenic | 25.0% |
| ! | ACAAAATGTGATCCAAAAAA+TGG | - | chr4.3:88274130-88274149 | MS.gene053211:CDS | 25.0% |
| ! | ACTTGCTTTACATTTAACAA+TGG | + | chr4.3:88274790-88274809 | None:intergenic | 25.0% |
| ! | AGAAACTATAGTAAATGGAT+AGG | - | chr4.3:88273301-88273320 | MS.gene053211:intron | 25.0% |
| ! | ATGTGGATTTGTACATAATA+TGG | - | chr4.3:88274393-88274412 | MS.gene053211:intron | 25.0% |
| ! | ATGTTATATTTGTTCCAAAC+AGG | - | chr4.3:88272719-88272738 | MS.gene053211:intron | 25.0% |
| ! | CAAGAATTAGAAGTAAGAAT+AGG | + | chr4.3:88273425-88273444 | None:intergenic | 25.0% |
| ! | CTAAAAACATTAGGAAATGA+AGG | + | chr4.3:88274301-88274320 | None:intergenic | 25.0% |
| ! | GATAGTATACATGAAAAATG+TGG | - | chr4.3:88274556-88274575 | MS.gene053211:intron | 25.0% |
| ! | GTTGCTACTAATTACTAATT+TGG | - | chr4.3:88274708-88274727 | MS.gene053211:CDS | 25.0% |
| ! | TAAAACAATAGAGAAAGAAG+TGG | - | chr4.3:88273141-88273160 | MS.gene053211:intron | 25.0% |
| ! | TACATTAGATAAATCCCAAA+TGG | + | chr4.3:88274325-88274344 | None:intergenic | 25.0% |
| ! | TATATCTATAGAGAGAAAGA+GGG | - | chr4.3:88274680-88274699 | MS.gene053211:CDS | 25.0% |
| ! | TCTTAGTAAAGTAATCATAG+TGG | + | chr4.3:88273284-88273303 | None:intergenic | 25.0% |
| ! | TTAGGTTAATAGTTAGAGTT+TGG | - | chr4.3:88273675-88273694 | MS.gene053211:intron | 25.0% |
| ! | TTTGTGAACAAATTGATTGA+TGG | + | chr4.3:88273878-88273897 | None:intergenic | 25.0% |
| !! | CATTTTGTTAGGTCTTTTTT+AGG | + | chr4.3:88274118-88274137 | None:intergenic | 25.0% |
| !! | CTTCATTTCCTAATGTTTTT+AGG | - | chr4.3:88274299-88274318 | MS.gene053211:intron | 25.0% |
| !! | TCTTAACCTCTATTTTATAG+AGG | - | chr4.3:88273505-88273524 | MS.gene053211:intron | 25.0% |
| !! | TTTGGGATTTATCTAATGTA+TGG | - | chr4.3:88274325-88274344 | MS.gene053211:intron | 25.0% |
| !! | TTTTTGGATCACATTTTGTT+AGG | + | chr4.3:88274129-88274148 | None:intergenic | 25.0% |
| !!! | GTAAAACTTGCTTATGTTTT+AGG | - | chr4.3:88272825-88272844 | MS.gene053211:intron | 25.0% |
| AAGATAATTTCCTCCAATGT+GGG | + | chr4.3:88274489-88274508 | None:intergenic | 30.0% | |
| AATGTGAGTACTCAAAATTC+AGG | - | chr4.3:88273900-88273919 | MS.gene053211:intron | 30.0% | |
| ACACTTAATATTGCATAGCT+TGG | + | chr4.3:88274166-88274185 | None:intergenic | 30.0% | |
| ACATAAAATGACATGAGCTA+GGG | + | chr4.3:88274649-88274668 | None:intergenic | 30.0% | |
| ACATTGGAGGAAATTATCTT+GGG | - | chr4.3:88274489-88274508 | MS.gene053211:intron | 30.0% | |
| AGTATTTATGACTCAAGACA+CGG | + | chr4.3:88272667-88272686 | None:intergenic | 30.0% | |
| AGTTCTTCATCTAGACAATA+AGG | - | chr4.3:88273370-88273389 | MS.gene053211:intron | 30.0% | |
| ATATTAGTTGTCAGCATGTT+AGG | - | chr4.3:88273657-88273676 | MS.gene053211:intron | 30.0% | |
| CAACTTATGAAGTCATTATG+TGG | - | chr4.3:88274376-88274395 | MS.gene053211:intron | 30.0% | |
| CAACTTTCTCATACTTCATT+TGG | - | chr4.3:88273342-88273361 | MS.gene053211:intron | 30.0% | |
| CTAAATCATAATGTCGCATT+AGG | + | chr4.3:88272570-88272589 | None:intergenic | 30.0% | |
| CTAGTTTCACAGTTTGATAT+TGG | - | chr4.3:88272688-88272707 | MS.gene053211:intron | 30.0% | |
| CTATAATTGTACCAATCTGA+GGG | + | chr4.3:88274583-88274602 | None:intergenic | 30.0% | |
| CTATATCTATAGAGAGAAAG+AGG | - | chr4.3:88274679-88274698 | MS.gene053211:CDS | 30.0% | |
| CTTTCAATTACATGTTATGC+TGG | - | chr4.3:88272298-88272317 | MS.gene053211:intron | 30.0% | |
| GAATCATGGTTGAAATAGTT+CGG | + | chr4.3:88273582-88273601 | None:intergenic | 30.0% | |
| GCATTAGGTATACATCAATA+TGG | + | chr4.3:88272555-88272574 | None:intergenic | 30.0% | |
| GTGTTCAAATTGCAAGTTAA+AGG | - | chr4.3:88274202-88274221 | MS.gene053211:CDS | 30.0% | |
| TAGTTGAACATTTAGAAGAG+TGG | - | chr4.3:88273798-88273817 | MS.gene053211:intron | 30.0% | |
| TATTAGATGAATGTATGCCA+TGG | - | chr4.3:88274266-88274285 | MS.gene053211:intron | 30.0% | |
| TATTGTCTAGATGAAGAACT+TGG | + | chr4.3:88273370-88273389 | None:intergenic | 30.0% | |
| TCCAAAGTTGTTCAAAAAGA+AGG | + | chr4.3:88273709-88273728 | None:intergenic | 30.0% | |
| TCCACAAAAAACCTTACTTT+AGG | - | chr4.3:88273393-88273412 | MS.gene053211:intron | 30.0% | |
| TCTATAATTGTACCAATCTG+AGG | + | chr4.3:88274584-88274603 | None:intergenic | 30.0% | |
| TCTCTTCCTCTATAAAATAG+AGG | + | chr4.3:88273514-88273533 | None:intergenic | 30.0% | |
| TGAAAATAGAACCTGTGTTT+GGG | + | chr4.3:88272864-88272883 | None:intergenic | 30.0% | |
| TTAATATTGCATAGCTTGGA+GGG | + | chr4.3:88274162-88274181 | None:intergenic | 30.0% | |
| TTGAAAATAGAACCTGTGTT+TGG | + | chr4.3:88272865-88272884 | None:intergenic | 30.0% | |
| ! | ACCTTCTTTTTGAACAACTT+TGG | - | chr4.3:88273705-88273724 | MS.gene053211:intron | 30.0% |
| ! | ACTTAATTTGGGCACATTTA+TGG | - | chr4.3:88274087-88274106 | MS.gene053211:intron | 30.0% |
| ! | TCTAATGTATGGATTACACA+TGG | - | chr4.3:88274336-88274355 | MS.gene053211:intron | 30.0% |
| ! | TTCTTTTTGAACAACTTTGG+AGG | - | chr4.3:88273708-88273727 | MS.gene053211:intron | 30.0% |
| !!! | AAGTTTTGAAATGACTTGTG+TGG | + | chr4.3:88273035-88273054 | None:intergenic | 30.0% |
| !!! | CTAATGTTTTTAGGCCATTT+GGG | - | chr4.3:88274308-88274327 | MS.gene053211:intron | 30.0% |
| !!! | TGTTAGGTCTTTTTTAGGTA+TGG | + | chr4.3:88274113-88274132 | None:intergenic | 30.0% |
| AACAATAGAGAAAGAAGTGG+TGG | - | chr4.3:88273144-88273163 | MS.gene053211:intron | 35.0% | |
| AAGAGTGGTGCAAACAAAAA+GGG | - | chr4.3:88273813-88273832 | MS.gene053211:intron | 35.0% | |
| AAGTGACGAATTCTGCATAT+AGG | + | chr4.3:88272281-88272300 | None:intergenic | 35.0% | |
| AATAGGTCAGTAACAAGAGA+AGG | + | chr4.3:88272251-88272270 | None:intergenic | 35.0% | |
| ACAATAGAGAAAGAAGTGGT+GGG | - | chr4.3:88273145-88273164 | MS.gene053211:intron | 35.0% | |
| ACACAACATGCATGTACAAA+TGG | + | chr4.3:88274235-88274254 | None:intergenic | 35.0% | |
| AGAAGTTGTAGGAGTGATAA+GGG | - | chr4.3:88272764-88272783 | MS.gene053211:intron | 35.0% | |
| ATAGGATGATGCCTAAAGTA+AGG | + | chr4.3:88273407-88273426 | None:intergenic | 35.0% | |
| CAAAGTGGCAGTAGAAAAAT+TGG | - | chr4.3:88272193-88272212 | MS.gene053211:intron | 35.0% | |
| CAAGATAATTTCCTCCAATG+TGG | + | chr4.3:88274490-88274509 | None:intergenic | 35.0% | |
| CAAGTTGTTATGTGCATTCT+TGG | - | chr4.3:88273074-88273093 | MS.gene053211:intron | 35.0% | |
| CACATAAAATGACATGAGCT+AGG | + | chr4.3:88274650-88274669 | None:intergenic | 35.0% | |
| CACATTGGAGGAAATTATCT+TGG | - | chr4.3:88274488-88274507 | MS.gene053211:intron | 35.0% | |
| CATAATATGGCTAGAGATGA+TGG | - | chr4.3:88274406-88274425 | MS.gene053211:intron | 35.0% | |
| CCAAATGGCCTAAAAACATT+AGG | + | chr4.3:88274310-88274329 | None:intergenic | 35.0% | |
| CTTAATATTGCATAGCTTGG+AGG | + | chr4.3:88274163-88274182 | None:intergenic | 35.0% | |
| GCAAAAACCATCATCAAAGA+AGG | - | chr4.3:88272124-88272143 | MS.gene053211:intron | 35.0% | |
| GCAAACATATGGTTGTATGT+CGG | + | chr4.3:88274019-88274038 | None:intergenic | 35.0% | |
| GCTATGCAATATTAAGTGTG+TGG | - | chr4.3:88274167-88274186 | MS.gene053211:CDS | 35.0% | |
| GTATTTATGACTCAAGACAC+GGG | + | chr4.3:88272666-88272685 | None:intergenic | 35.0% | |
| GTGTGAAAACAGTTACAAGA+GGG | - | chr4.3:88272790-88272809 | MS.gene053211:intron | 35.0% | |
| TATTTATGACTCAAGACACG+GGG | + | chr4.3:88272665-88272684 | None:intergenic | 35.0% | |
| TCTCTTGTTACTGACCTATT+GGG | - | chr4.3:88272251-88272270 | MS.gene053211:intron | 35.0% | |
| TCTTCAACCTTCTTTGATGA+TGG | + | chr4.3:88272134-88272153 | None:intergenic | 35.0% | |
| TCTTGGGAAAAATTCTGCAT+TGG | + | chr4.3:88274041-88274060 | None:intergenic | 35.0% | |
| TGATGAAGAGAAACACAAAG+TGG | - | chr4.3:88272178-88272197 | MS.gene053211:intron | 35.0% | |
| TGGAATGTATCGTTCTTGAA+TGG | - | chr4.3:88274728-88274747 | MS.gene053211:CDS | 35.0% | |
| TGGCAGTAGAAAAATTGGAA+AGG | - | chr4.3:88272198-88272217 | MS.gene053211:intron | 35.0% | |
| TGTGTGAAAACAGTTACAAG+AGG | - | chr4.3:88272789-88272808 | MS.gene053211:intron | 35.0% | |
| TTCTCTTGTTACTGACCTAT+TGG | - | chr4.3:88272250-88272269 | MS.gene053211:intron | 35.0% | |
| TTTGTACATGCATGTTGTGT+AGG | - | chr4.3:88274235-88274254 | MS.gene053211:intron | 35.0% | |
| ! | AAAATTGGAAAGGCTTTGTG+AGG | - | chr4.3:88272208-88272227 | MS.gene053211:intron | 35.0% |
| ! | AATGTATGGATTACACATGG+AGG | - | chr4.3:88274339-88274358 | MS.gene053211:intron | 35.0% |
| ! | ATGTATGGATTACACATGGA+GGG | - | chr4.3:88274340-88274359 | MS.gene053211:intron | 35.0% |
| ! | ATTCTGCATTGGCAAACATA+TGG | + | chr4.3:88274030-88274049 | None:intergenic | 35.0% |
| ! | GAGAATTCGAGTTTGAATCA+TGG | + | chr4.3:88273596-88273615 | None:intergenic | 35.0% |
| !!! | CCTAATGTTTTTAGGCCATT+TGG | - | chr4.3:88274307-88274326 | MS.gene053211:intron | 35.0% |
| !!! | GCCTAAAGTAAGGTTTTTTG+TGG | + | chr4.3:88273397-88273416 | None:intergenic | 35.0% |
| !!! | GGAGGGAAAATACCATTTTT+TGG | + | chr4.3:88274145-88274164 | None:intergenic | 35.0% |
| AAAAATGTGGACCCTCAGAT+TGG | - | chr4.3:88274569-88274588 | MS.gene053211:intron | 40.0% | |
| AATAGAGAAAGAAGTGGTGG+GGG | - | chr4.3:88273147-88273166 | MS.gene053211:intron | 40.0% | |
| AATGAAGGTAACCTTAGCCA+TGG | + | chr4.3:88274286-88274305 | None:intergenic | 40.0% | |
| ACATACAGGAGATTTGGCAT+TGG | - | chr4.3:88273767-88273786 | MS.gene053211:intron | 40.0% | |
| AGAGTGGTGCAAACAAAAAG+GGG | - | chr4.3:88273814-88273833 | MS.gene053211:intron | 40.0% | |
| AGATTGTCTTTGGCACATAC+AGG | - | chr4.3:88273753-88273772 | MS.gene053211:intron | 40.0% | |
| AGCTAGGGTTAAAAATCACG+AGG | + | chr4.3:88274634-88274653 | None:intergenic | 40.0% | |
| AGGGGCTAAGTATGCATATA+TGG | - | chr4.3:88273832-88273851 | MS.gene053211:intron | 40.0% | |
| ATGAATGTATGCCATGGCTA+AGG | - | chr4.3:88274272-88274291 | MS.gene053211:intron | 40.0% | |
| CAATAGAGAAAGAAGTGGTG+GGG | - | chr4.3:88273146-88273165 | MS.gene053211:intron | 40.0% | |
| GAAGAGTGGTGCAAACAAAA+AGG | - | chr4.3:88273812-88273831 | MS.gene053211:intron | 40.0% | |
| GAAGTTGTAGGAGTGATAAG+GGG | - | chr4.3:88272765-88272784 | MS.gene053211:intron | 40.0% | |
| GAGAAGTTGTAGGAGTGATA+AGG | - | chr4.3:88272763-88272782 | MS.gene053211:intron | 40.0% | |
| GTTGCAGAATATGGAGAAGA+AGG | - | chr4.3:88272741-88272760 | MS.gene053211:intron | 40.0% | |
| TATAGAGAGAAAGAGGGTCT+TGG | - | chr4.3:88274686-88274705 | MS.gene053211:CDS | 40.0% | |
| TCCAAACAGGTTGCAGAATA+TGG | - | chr4.3:88272732-88272751 | MS.gene053211:intron | 40.0% | |
| TCCATATTCTGCAACCTGTT+TGG | + | chr4.3:88272736-88272755 | None:intergenic | 40.0% | |
| TGAAGATAGCAGCTGAAACT+TGG | - | chr4.3:88272102-88272121 | MS.gene053211:intron | 40.0% | |
| TGCATATAGGATCACCCAAT+AGG | + | chr4.3:88272268-88272287 | None:intergenic | 40.0% | |
| TGTGACTGAAGTGAGTCAAA+GGG | - | chr4.3:88274444-88274463 | MS.gene053211:intron | 40.0% | |
| TTACACATGGAGGGTAAATG+TGG | - | chr4.3:88274349-88274368 | MS.gene053211:intron | 40.0% | |
| TTAGAGAAGTGATCCCACAT+TGG | - | chr4.3:88274473-88274492 | MS.gene053211:intron | 40.0% | |
| TTGACTCACTTCAGTCACAA+TGG | + | chr4.3:88274443-88274462 | None:intergenic | 40.0% | |
| TTGTGACTGAAGTGAGTCAA+AGG | - | chr4.3:88274443-88274462 | MS.gene053211:intron | 40.0% | |
| TTTGGCACATACAGGAGATT+TGG | - | chr4.3:88273761-88273780 | MS.gene053211:intron | 40.0% | |
| ! | AATATGGCTAGAGATGATGG+TGG | - | chr4.3:88274409-88274428 | MS.gene053211:intron | 40.0% |
| ! | ACAGCAATGTTTGTGCTGAT+TGG | + | chr4.3:88273968-88273987 | None:intergenic | 40.0% |
| AGACACGGGGAGAAAATCAT+CGG | + | chr4.3:88272652-88272671 | None:intergenic | 45.0% | |
| CTTTGTGAGGTTGGACAAAG+AGG | - | chr4.3:88272221-88272240 | MS.gene053211:intron | 45.0% | |
| GAGGAAATTATCTTGGGCTG+AGG | - | chr4.3:88274495-88274514 | MS.gene053211:intron | 45.0% | |
| GAGTCTTGAGCACATGAAGA+AGG | - | chr4.3:88274534-88274553 | MS.gene053211:intron | 45.0% | |
| GGAGAAGAAGGAGAAGTTGT+AGG | - | chr4.3:88272753-88272772 | MS.gene053211:intron | 45.0% | |
| GTGGGATCACTTCTCTAACT+GGG | + | chr4.3:88274471-88274490 | None:intergenic | 45.0% | |
| GTTTACGAGATATCAGCTCG+TGG | + | chr4.3:88272454-88272473 | None:intergenic | 45.0% | |
| TGTGGGATCACTTCTCTAAC+TGG | + | chr4.3:88274472-88274491 | None:intergenic | 45.0% | |
| ! | TTGGAAAGGCTTTGTGAGGT+TGG | - | chr4.3:88272212-88272231 | MS.gene053211:intron | 45.0% |
| !! | CTAGAGATGATGGTGGTTGT+GGG | - | chr4.3:88274416-88274435 | MS.gene053211:intron | 45.0% |
| !! | TAGAGATGATGGTGGTTGTG+GGG | - | chr4.3:88274417-88274436 | MS.gene053211:intron | 45.0% |
| !!! | TCTTTTTTATTTTATTTTAT+GGG | - | chr4.3:88274859-88274878 | MS.gene053211:CDS | 5.0% |
| CATATGGTTGTATGTCGGCC+CGG | + | chr4.3:88274014-88274033 | None:intergenic | 50.0% | |
| GAGAAGTGATCCCACATTGG+AGG | - | chr4.3:88274476-88274495 | MS.gene053211:intron | 50.0% | |
| GGCTTGTAGTGAGCATGAAC+AGG | + | chr4.3:88273947-88273966 | None:intergenic | 50.0% | |
| TATCTTGGGCTGAGGACATG+TGG | - | chr4.3:88274503-88274522 | MS.gene053211:intron | 50.0% | |
| TCAGAGTCTCTCCCAAACAC+AGG | - | chr4.3:88272850-88272869 | MS.gene053211:intron | 50.0% | |
| TGTAGTGAGCATGAACAGGC+TGG | + | chr4.3:88273943-88273962 | None:intergenic | 50.0% | |
| !! | GCTAGAGATGATGGTGGTTG+TGG | - | chr4.3:88274415-88274434 | MS.gene053211:intron | 50.0% |
| CCAAGCGCGATGGTAGGCGA+AGG | + | chr4.3:88273991-88274010 | None:intergenic | 65.0% | |
| CCTTCGCCTACCATCGCGCT+TGG | - | chr4.3:88273988-88274007 | MS.gene053211:intron | 65.0% | |
| CGCCTACCATCGCGCTTGGC+CGG | - | chr4.3:88273992-88274011 | MS.gene053211:intron | 70.0% | |
| GCCTACCATCGCGCTTGGCC+GGG | - | chr4.3:88273993-88274012 | MS.gene053211:intron | 70.0% | |
| GCCCGGCCAAGCGCGATGGT+AGG | + | chr4.3:88273997-88274016 | None:intergenic | 75.0% | |
| ! | GTCGGCCCGGCCAAGCGCGA+TGG | + | chr4.3:88274001-88274020 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 88272095 | 88274897 | 88272095 | ID=MS.gene053211 |
| chr4.3 | mRNA | 88272095 | 88274897 | 88272095 | ID=MS.gene053211.t1;Parent=MS.gene053211 |
| chr4.3 | exon | 88274673 | 88274897 | 88274673 | ID=MS.gene053211.t1.exon1;Parent=MS.gene053211.t1 |
| chr4.3 | CDS | 88274673 | 88274897 | 88274673 | ID=cds.MS.gene053211.t1;Parent=MS.gene053211.t1 |
| chr4.3 | exon | 88274121 | 88274251 | 88274121 | ID=MS.gene053211.t1.exon2;Parent=MS.gene053211.t1 |
| chr4.3 | CDS | 88274121 | 88274251 | 88274121 | ID=cds.MS.gene053211.t1;Parent=MS.gene053211.t1 |
| chr4.3 | exon | 88272402 | 88272671 | 88272402 | ID=MS.gene053211.t1.exon3;Parent=MS.gene053211.t1 |
| chr4.3 | CDS | 88272402 | 88272671 | 88272402 | ID=cds.MS.gene053211.t1;Parent=MS.gene053211.t1 |
| chr4.3 | exon | 88272095 | 88272104 | 88272095 | ID=MS.gene053211.t1.exon4;Parent=MS.gene053211.t1 |
| chr4.3 | CDS | 88272095 | 88272104 | 88272095 | ID=cds.MS.gene053211.t1;Parent=MS.gene053211.t1 |
| Gene Sequence |
| Protein sequence |
