Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053308.t1 | KEH28669.1 | 92.1 | 279 | 22 | 0 | 7 | 285 | 1 | 279 | 4.50E-143 | 517.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053308.t1 | Q9SAH9 | 48.5 | 272 | 134 | 3 | 15 | 285 | 4 | 270 | 7.9e-64 | 245.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053308.t1 | A0A072UFZ3 | 92.1 | 279 | 22 | 0 | 7 | 285 | 1 | 279 | 3.2e-143 | 517.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053308 | MS.gene053310 | 0.862511 | 4.81E-64 | -1.69E-46 |
| MS.gene053308 | MS.gene25300 | 0.8808 | 4.07E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTATCTTTCGGTAAATT+AGG | 0.089094 | 8.2:+38244017 | None:intergenic |
| CATTTGTCCTACACATGTTT+TGG | 0.214166 | 8.2:-38243687 | MS.gene053308:CDS |
| CTTTATCTTTCGGTAAATTA+GGG | 0.276712 | 8.2:+38244018 | None:intergenic |
| CGTAGTTGATGCAATACTTT+TGG | 0.281567 | 8.2:-38243201 | MS.gene053308:CDS |
| AAAAGAAGAGGAGGAGATAA+TGG | 0.291318 | 8.2:-38245864 | MS.gene053308:CDS |
| TTTAACAAGTGTTCATATTT+CGG | 0.294879 | 8.2:+38244423 | None:intergenic |
| AATAAGAAGGTGTGTGTAAC+TGG | 0.296410 | 8.2:-38245818 | MS.gene053308:CDS |
| CTGAATTTCGCGAAAAGAAC+TGG | 0.329580 | 8.2:-38243725 | MS.gene053308:CDS |
| TTCGTAGGGTACTTGTAGTT+TGG | 0.336746 | 8.2:+38243086 | None:intergenic |
| ATATGAACACTTGTTAAAAC+TGG | 0.343713 | 8.2:-38244418 | MS.gene053308:CDS |
| CACTATCATCATACAAGATT+TGG | 0.347439 | 8.2:-38243132 | MS.gene053308:CDS |
| CTGTTCTTCTGCTTCTGTCT+TGG | 0.348831 | 8.2:+38243751 | None:intergenic |
| ACTCTTCAAAGCAGATATCT+TGG | 0.353367 | 8.2:-38244373 | MS.gene053308:CDS |
| TTTGTGGTTGACTGTAAAAT+TGG | 0.360540 | 8.2:+38243662 | None:intergenic |
| TCATCAATCACTTTATCTTT+CGG | 0.362730 | 8.2:+38244008 | None:intergenic |
| AGAAATGTTACCTCAGGATT+AGG | 0.364457 | 8.2:+38244270 | None:intergenic |
| TCCATGGACAAAGTAACCTT+TGG | 0.412376 | 8.2:+38245751 | None:intergenic |
| GAAAATGAAGCTTACTTCGT+AGG | 0.425779 | 8.2:+38243071 | None:intergenic |
| CAAGACAGAAGCAGAAGAAC+AGG | 0.437827 | 8.2:-38243750 | MS.gene053308:CDS |
| CAAAACATGTGTAGGACAAA+TGG | 0.439225 | 8.2:+38243688 | None:intergenic |
| AGTCAAGCTACTTGTATTTG+TGG | 0.440700 | 8.2:+38243646 | None:intergenic |
| TATCTGCTTTGAAGAGTGTA+AGG | 0.460836 | 8.2:+38244379 | None:intergenic |
| CATGGAACTGTTAGAGAGCC+TGG | 0.466759 | 8.2:-38245734 | MS.gene053308:intron |
| TCGGTTTACTCTGCAATTGT+TGG | 0.471908 | 8.2:-38244342 | MS.gene053308:CDS |
| TCCAAAGGTTACTTTGTCCA+TGG | 0.474794 | 8.2:-38245752 | MS.gene053308:CDS |
| CATTCGAGAATAAGTGTGCT+TGG | 0.475236 | 8.2:-38243241 | MS.gene053308:CDS |
| TTTGATAGTAAAAGAAGAGG+AGG | 0.475358 | 8.2:-38245873 | None:intergenic |
| AGATATCTTGGATTATGAAT+CGG | 0.476489 | 8.2:-38244361 | MS.gene053308:CDS |
| GGTACAACTGTTGAAGGTAC+AGG | 0.487565 | 8.2:+38244291 | None:intergenic |
| AAGTGATTGATGAGTCTTGT+TGG | 0.503448 | 8.2:-38243998 | MS.gene053308:CDS |
| GGATTAGGTACAACTGTTGA+AGG | 0.511645 | 8.2:+38244285 | None:intergenic |
| CAGGTGGGTTTGTAGCATCA+TGG | 0.513595 | 8.2:-38245793 | MS.gene053308:CDS |
| TTCCACATTAGCTTTGAGAC+AGG | 0.513623 | 8.2:+38244082 | None:intergenic |
| AAAATGAAGCTTACTTCGTA+GGG | 0.514933 | 8.2:+38243072 | None:intergenic |
| TATCATCATACAAGATTTGG+TGG | 0.521319 | 8.2:-38243129 | MS.gene053308:CDS |
| GTTAAGCTTCTTCTTTCCAA+AGG | 0.521805 | 8.2:-38245767 | MS.gene053308:CDS |
| TTAGCAGTTCCCTTCACAGC+AGG | 0.530766 | 8.2:+38244116 | None:intergenic |
| AGGAGATAATGGAAACAAGT+GGG | 0.540632 | 8.2:-38245853 | MS.gene053308:CDS |
| AGACTACTGCAAGAATACTA+AGG | 0.551184 | 8.2:-38243967 | MS.gene053308:intron |
| CAGGCTCTCTAACAGTTCCA+TGG | 0.553939 | 8.2:+38245735 | None:intergenic |
| AGTGATTGAGCCTGCTGTGA+AGG | 0.558611 | 8.2:-38244126 | MS.gene053308:CDS |
| AAGGTGTGTGTAACTGGAGC+AGG | 0.564196 | 8.2:-38245812 | MS.gene053308:CDS |
| ATGAGAATCACAAGGCAGAC+GGG | 0.568344 | 8.2:-38243175 | MS.gene053308:CDS |
| GGAGATAATGGAAACAAGTG+GGG | 0.572345 | 8.2:-38245852 | MS.gene053308:CDS |
| ATTGGTCCCAAAACATGTGT+AGG | 0.579319 | 8.2:+38243680 | None:intergenic |
| GTGTGTGTAACTGGAGCAGG+TGG | 0.580174 | 8.2:-38245809 | MS.gene053308:CDS |
| TATGAGAATCACAAGGCAGA+CGG | 0.581333 | 8.2:-38243176 | MS.gene053308:CDS |
| GAGGAGATAATGGAAACAAG+TGG | 0.583352 | 8.2:-38245854 | MS.gene053308:CDS |
| AAGGTACAGGGCTAGCAACA+TGG | 0.584108 | 8.2:+38244304 | None:intergenic |
| GGGTGTTAATAACAATAAGA+AGG | 0.597736 | 8.2:-38245831 | MS.gene053308:CDS |
| GTGATTGAGCCTGCTGTGAA+GGG | 0.614167 | 8.2:-38244125 | MS.gene053308:CDS |
| AGCCTGTCTCAAAGCTAATG+TGG | 0.618834 | 8.2:-38244084 | MS.gene053308:CDS |
| GTACAACTGTTGAAGGTACA+GGG | 0.621515 | 8.2:+38244292 | None:intergenic |
| GAGATAATGGAAACAAGTGG+GGG | 0.650626 | 8.2:-38245851 | MS.gene053308:CDS |
| ACTTATTCTCGAATGAGTCA+CGG | 0.655492 | 8.2:+38243249 | None:intergenic |
| GAAAAGAACTGGACTTAACG+TGG | 0.670351 | 8.2:-38243714 | MS.gene053308:CDS |
| AACAGTTGTACCTAATCCTG+AGG | 0.672409 | 8.2:-38244280 | MS.gene053308:intron |
| TTTGGCTTATGAGAATCACA+AGG | 0.712000 | 8.2:-38243183 | MS.gene053308:CDS |
| TGTGTGTAACTGGAGCAGGT+GGG | 0.782982 | 8.2:-38245808 | MS.gene053308:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATTTCATTACTATATA+TGG | - | chr8.2:38243385-38243404 | MS.gene053308:intron | 15.0% |
| !! | ATGAATTTCATTACTATATA+TGG | - | chr8.2:38243866-38243885 | MS.gene053308:intron | 15.0% |
| !! | GGATTAAATATATATTTGTT+GGG | + | chr8.2:38244129-38244148 | None:intergenic | 15.0% |
| !! | TGAAATTAGTTAAACTATAA+TGG | + | chr8.2:38245633-38245652 | None:intergenic | 15.0% |
| !!! | AAAAATAAAAAGTTTCGTTT+TGG | - | chr8.2:38244203-38244222 | MS.gene053308:intron | 15.0% |
| !!! | AAAATAAAAAGTTTCGTTTT+GGG | - | chr8.2:38244204-38244223 | MS.gene053308:intron | 15.0% |
| !!! | AGAAGTTCTAAAAAAATTTA+TGG | - | chr8.2:38243460-38243479 | MS.gene053308:intron | 15.0% |
| !!! | GATTAAATATATATTTGTTG+GGG | + | chr8.2:38244128-38244147 | None:intergenic | 15.0% |
| !!! | TTTTTAATACGAATTTGATA+AGG | + | chr8.2:38245365-38245384 | None:intergenic | 15.0% |
| !! | AAGAGTTTCATTACTATATA+TGG | - | chr8.2:38243705-38243724 | MS.gene053308:CDS | 20.0% |
| !! | ACTATATATGGAAAATAACT+AGG | - | chr8.2:38243397-38243416 | MS.gene053308:intron | 20.0% |
| !! | ATCTCAAATATATACATACA+GGG | + | chr8.2:38244150-38244169 | None:intergenic | 20.0% |
| !! | GGGATTAAATATATATTTGT+TGG | + | chr8.2:38244130-38244149 | None:intergenic | 20.0% |
| !! | TTTAACAAGTGTTCATATTT+CGG | + | chr8.2:38244531-38244550 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAAGGTCATATAT+AGG | + | chr8.2:38244359-38244378 | None:intergenic | 20.0% |
| !!! | TCATTTAGACAATTAGATTT+TGG | + | chr8.2:38243976-38243995 | None:intergenic | 20.0% |
| ! | AAAAAATAGAAGAATGCACA+AGG | + | chr8.2:38245453-38245472 | None:intergenic | 25.0% |
| ! | AAAATCATGTCTTTCTTAGA+AGG | - | chr8.2:38245679-38245698 | MS.gene053308:intron | 25.0% |
| ! | ACTATATATGGAAAGAAACT+AGG | - | chr8.2:38243557-38243576 | MS.gene053308:intron | 25.0% |
| ! | ACTGTTAATGTCAAAAACAT+AGG | - | chr8.2:38244095-38244114 | MS.gene053308:CDS | 25.0% |
| ! | ACTTTATCTTTCGGTAAATT+AGG | + | chr8.2:38244937-38244956 | None:intergenic | 25.0% |
| ! | AGATATCTTGGATTATGAAT+CGG | - | chr8.2:38244590-38244609 | MS.gene053308:intron | 25.0% |
| ! | ATTAGTTAAACTATAATGGC+AGG | + | chr8.2:38245629-38245648 | None:intergenic | 25.0% |
| ! | CATCTCAAATATATACATAC+AGG | + | chr8.2:38244151-38244170 | None:intergenic | 25.0% |
| ! | CTTTATCTTTCGGTAAATTA+GGG | + | chr8.2:38244936-38244955 | None:intergenic | 25.0% |
| ! | TCATCAATCACTTTATCTTT+CGG | + | chr8.2:38244946-38244965 | None:intergenic | 25.0% |
| ! | TTTGAATAGAATTGTTGAAG+AGG | - | chr8.2:38244419-38244438 | MS.gene053308:CDS | 25.0% |
| !! | ACTCTCATCAAACTTTTAAA+AGG | - | chr8.2:38245325-38245344 | MS.gene053308:intron | 25.0% |
| !! | ATATGAACACTTGTTAAAAC+TGG | - | chr8.2:38244533-38244552 | MS.gene053308:intron | 25.0% |
| !!! | TATAGAAGTTTTGTAACACA+AGG | + | chr8.2:38245425-38245444 | None:intergenic | 25.0% |
| AACATTAGAAATGTTACCTC+AGG | + | chr8.2:38244690-38244709 | None:intergenic | 30.0% | |
| AATTATGAATATGCCCTTCA+TGG | - | chr8.2:38245577-38245596 | MS.gene053308:intron | 30.0% | |
| AGTTCTATGATGGTCATAAA+TGG | + | chr8.2:38244056-38244075 | None:intergenic | 30.0% | |
| ATACTTGAAGCTTAATATGC+AGG | - | chr8.2:38244798-38244817 | MS.gene053308:intron | 30.0% | |
| ATGGAAAATAACTAGGCTTA+AGG | - | chr8.2:38243404-38243423 | MS.gene053308:intron | 30.0% | |
| ATTATGAATATGCCCTTCAT+GGG | - | chr8.2:38245578-38245597 | MS.gene053308:intron | 30.0% | |
| ATTTGATAAGGCATATCAGT+AGG | + | chr8.2:38245353-38245372 | None:intergenic | 30.0% | |
| CACTATCATCATACAAGATT+TGG | - | chr8.2:38245819-38245838 | MS.gene053308:CDS | 30.0% | |
| GACACTACTATCATATCATA+AGG | + | chr8.2:38245057-38245076 | None:intergenic | 30.0% | |
| GGGTGTTAATAACAATAAGA+AGG | - | chr8.2:38243120-38243139 | MS.gene053308:CDS | 30.0% | |
| GGTTGAAAACAAAGCATAAA+GGG | + | chr8.2:38244326-38244345 | None:intergenic | 30.0% | |
| TATCATCATACAAGATTTGG+TGG | - | chr8.2:38245822-38245841 | MS.gene053308:CDS | 30.0% | |
| TGGAATAATAATACCAGTTC+TGG | + | chr8.2:38245183-38245202 | None:intergenic | 30.0% | |
| TGGTTGAAAACAAAGCATAA+AGG | + | chr8.2:38244327-38244346 | None:intergenic | 30.0% | |
| TTTGTGGTTGACTGTAAAAT+TGG | + | chr8.2:38245292-38245311 | None:intergenic | 30.0% | |
| ! | ATTTGTCCTACACATGTTTT+GGG | - | chr8.2:38245265-38245284 | MS.gene053308:intron | 30.0% |
| ! | TTTTAGCCTCTATAAGTGTA+TGG | - | chr8.2:38245469-38245488 | MS.gene053308:intron | 30.0% |
| ! | TTTTGCAAGTTGCTACATAT+TGG | + | chr8.2:38244006-38244025 | None:intergenic | 30.0% |
| !!! | CAAGTATTCAGACTTTTTCA+TGG | + | chr8.2:38244785-38244804 | None:intergenic | 30.0% |
| AAAAGAAGAGGAGGAGATAA+TGG | - | chr8.2:38243087-38243106 | MS.gene053308:CDS | 35.0% | |
| ACTCTTCAAAGCAGATATCT+TGG | - | chr8.2:38244578-38244597 | MS.gene053308:intron | 35.0% | |
| ACTTATTCTCGAATGAGTCA+CGG | + | chr8.2:38245705-38245724 | None:intergenic | 35.0% | |
| AGAAATGTTACCTCAGGATT+AGG | + | chr8.2:38244684-38244703 | None:intergenic | 35.0% | |
| AGACTACTGCAAGAATACTA+AGG | - | chr8.2:38244984-38245003 | MS.gene053308:intron | 35.0% | |
| AGTCAAGCTACTTGTATTTG+TGG | + | chr8.2:38245308-38245327 | None:intergenic | 35.0% | |
| ATATGAAGCATAGACACCTT+CGG | + | chr8.2:38244284-38244303 | None:intergenic | 35.0% | |
| ATGAGATGAGAAATAGTACC+AGG | + | chr8.2:38243238-38243257 | None:intergenic | 35.0% | |
| ATGGAAAGAAACTAGGCTTA+AGG | - | chr8.2:38243564-38243583 | MS.gene053308:intron | 35.0% | |
| ATGTCGTGTTTACTAACTTG+AGG | + | chr8.2:38244762-38244781 | None:intergenic | 35.0% | |
| CAAAACATGTGTAGGACAAA+TGG | + | chr8.2:38245266-38245285 | None:intergenic | 35.0% | |
| CAAAGGTCATATATAGGTCA+TGG | + | chr8.2:38244353-38244372 | None:intergenic | 35.0% | |
| GTTAAGCTTCTTCTTTCCAA+AGG | - | chr8.2:38243184-38243203 | MS.gene053308:CDS | 35.0% | |
| TCATATATAGGTCATGGAGT+TGG | + | chr8.2:38244347-38244366 | None:intergenic | 35.0% | |
| TCGAAAGAATGAGAGAAAAG+AGG | + | chr8.2:38244456-38244475 | None:intergenic | 35.0% | |
| TCTATGATGGTCATAAATGG+AGG | + | chr8.2:38244053-38244072 | None:intergenic | 35.0% | |
| TTATGAATATGCCCTTCATG+GGG | - | chr8.2:38245579-38245598 | MS.gene053308:intron | 35.0% | |
| ! | AAGTGATTGATGAGTCTTGT+TGG | - | chr8.2:38244953-38244972 | MS.gene053308:intron | 35.0% |
| ! | AATAAGAAGGTGTGTGTAAC+TGG | - | chr8.2:38243133-38243152 | MS.gene053308:CDS | 35.0% |
| ! | AGTTCTTTTCGCGAAATTCA+GGG | + | chr8.2:38245227-38245246 | None:intergenic | 35.0% |
| ! | CATTTGTCCTACACATGTTT+TGG | - | chr8.2:38245264-38245283 | MS.gene053308:intron | 35.0% |
| ! | GGCTTAAGGACATGTAATTT+TGG | - | chr8.2:38243418-38243437 | MS.gene053308:intron | 35.0% |
| ! | TCTTTTCTCTCATTCTTTCG+AGG | - | chr8.2:38244455-38244474 | MS.gene053308:intron | 35.0% |
| ! | TTTGGCTTATGAGAATCACA+AGG | - | chr8.2:38245768-38245787 | MS.gene053308:CDS | 35.0% |
| !! | AGGAGATAATGGAAACAAGT+GGG | - | chr8.2:38243098-38243117 | MS.gene053308:CDS | 35.0% |
| !! | CGTAGTTGATGCAATACTTT+TGG | - | chr8.2:38245750-38245769 | MS.gene053308:CDS | 35.0% |
| !! | CTGTTGAGCAGATTTTTCAA+AGG | + | chr8.2:38244370-38244389 | None:intergenic | 35.0% |
| !! | TATCTGCTTTGAAGAGTGTA+AGG | + | chr8.2:38244575-38244594 | None:intergenic | 35.0% |
| AACACACGTTAGACACTTCT+TGG | + | chr8.2:38244177-38244196 | None:intergenic | 40.0% | |
| AACAGTTGTACCTAATCCTG+AGG | - | chr8.2:38244671-38244690 | MS.gene053308:intron | 40.0% | |
| ACCATCATAGAACTCTGACA+CGG | - | chr8.2:38244062-38244081 | MS.gene053308:CDS | 40.0% | |
| AGTGTATGTCTGAAAACTGC+AGG | - | chr8.2:38244501-38244520 | MS.gene053308:intron | 40.0% | |
| ATTGGTCCCAAAACATGTGT+AGG | + | chr8.2:38245274-38245293 | None:intergenic | 40.0% | |
| CAGAGAAAAATCCCCATGAA+GGG | + | chr8.2:38245593-38245612 | None:intergenic | 40.0% | |
| CATTCGAGAATAAGTGTGCT+TGG | - | chr8.2:38245710-38245729 | MS.gene053308:intron | 40.0% | |
| CTGAATTTCGCGAAAAGAAC+TGG | - | chr8.2:38245226-38245245 | MS.gene053308:intron | 40.0% | |
| CTTGAAGCTTAATATGCAGG+TGG | - | chr8.2:38244801-38244820 | MS.gene053308:intron | 40.0% | |
| GAAAAGAACTGGACTTAACG+TGG | - | chr8.2:38245237-38245256 | MS.gene053308:intron | 40.0% | |
| GGATTAGGTACAACTGTTGA+AGG | + | chr8.2:38244669-38244688 | None:intergenic | 40.0% | |
| GTATGGCCATACACTTATAG+AGG | + | chr8.2:38245478-38245497 | None:intergenic | 40.0% | |
| TAATTTGATATGTCACCGCG+TGG | - | chr8.2:38244725-38244744 | MS.gene053308:intron | 40.0% | |
| TATGAAGCATAGACACCTTC+GGG | + | chr8.2:38244283-38244302 | None:intergenic | 40.0% | |
| TATGAGAATCACAAGGCAGA+CGG | - | chr8.2:38245775-38245794 | MS.gene053308:CDS | 40.0% | |
| TCCATGGACAAAGTAACCTT+TGG | + | chr8.2:38243203-38243222 | None:intergenic | 40.0% | |
| TCGGTTTACTCTGCAATTGT+TGG | - | chr8.2:38244609-38244628 | MS.gene053308:intron | 40.0% | |
| TCTTTCGAGGTATGAGTGTT+GGG | - | chr8.2:38244468-38244487 | MS.gene053308:intron | 40.0% | |
| TTCTTTCGAGGTATGAGTGT+TGG | - | chr8.2:38244467-38244486 | MS.gene053308:intron | 40.0% | |
| ! | CAGTTCTTTTCGCGAAATTC+AGG | + | chr8.2:38245228-38245247 | None:intergenic | 40.0% |
| ! | GTACAACTGTTGAAGGTACA+GGG | + | chr8.2:38244662-38244681 | None:intergenic | 40.0% |
| ! | TCCAAAGGTTACTTTGTCCA+TGG | - | chr8.2:38243199-38243218 | MS.gene053308:CDS | 40.0% |
| ! | TTCGTAGGGTACTTGTAGTT+TGG | + | chr8.2:38245868-38245887 | None:intergenic | 40.0% |
| !! | GAGATAATGGAAACAAGTGG+GGG | - | chr8.2:38243100-38243119 | MS.gene053308:CDS | 40.0% |
| !! | GAGGAGATAATGGAAACAAG+TGG | - | chr8.2:38243097-38243116 | MS.gene053308:CDS | 40.0% |
| !! | GGAGATAATGGAAACAAGTG+GGG | - | chr8.2:38243099-38243118 | MS.gene053308:CDS | 40.0% |
| !! | TTCCACATTAGCTTTGAGAC+AGG | + | chr8.2:38244872-38244891 | None:intergenic | 40.0% |
| AAAACACGATTGCGGTGAAG+CGG | + | chr8.2:38245507-38245526 | None:intergenic | 45.0% | |
| AGCCTGTCTCAAAGCTAATG+TGG | - | chr8.2:38244867-38244886 | MS.gene053308:intron | 45.0% | |
| ATGAGAATCACAAGGCAGAC+GGG | - | chr8.2:38245776-38245795 | MS.gene053308:CDS | 45.0% | |
| CAAGACAGAAGCAGAAGAAC+AGG | - | chr8.2:38245201-38245220 | MS.gene053308:intron | 45.0% | |
| CGTCACATATGATCCAGAAC+TGG | - | chr8.2:38245167-38245186 | MS.gene053308:intron | 45.0% | |
| CTGTTCTTCTGCTTCTGTCT+TGG | + | chr8.2:38245203-38245222 | None:intergenic | 45.0% | |
| GCAGAGAAAAATCCCCATGA+AGG | + | chr8.2:38245594-38245613 | None:intergenic | 45.0% | |
| TCCGTGTCAGAGTTCTATGA+TGG | + | chr8.2:38244066-38244085 | None:intergenic | 45.0% | |
| ! | CTTCACCGCAATCGTGTTTT+GGG | - | chr8.2:38245507-38245526 | MS.gene053308:intron | 45.0% |
| ! | GGTACAACTGTTGAAGGTAC+AGG | + | chr8.2:38244663-38244682 | None:intergenic | 45.0% |
| !! | TAAAAAAATTGAAAATTATT+AGG | + | chr8.2:38243265-38243284 | None:intergenic | 5.0% |
| AAACACGATTGCGGTGAAGC+GGG | + | chr8.2:38245506-38245525 | None:intergenic | 50.0% | |
| AAGGTGTGTGTAACTGGAGC+AGG | - | chr8.2:38243139-38243158 | MS.gene053308:CDS | 50.0% | |
| AGTGATTGAGCCTGCTGTGA+AGG | - | chr8.2:38244825-38244844 | MS.gene053308:intron | 50.0% | |
| CAGGCTCTCTAACAGTTCCA+TGG | + | chr8.2:38243219-38243238 | None:intergenic | 50.0% | |
| CATGGAACTGTTAGAGAGCC+TGG | - | chr8.2:38243217-38243236 | MS.gene053308:CDS | 50.0% | |
| CGACTCCCAAAACACGATTG+CGG | + | chr8.2:38245515-38245534 | None:intergenic | 50.0% | |
| GAGGCAAAACTAGAACCACG+CGG | + | chr8.2:38244743-38244762 | None:intergenic | 50.0% | |
| GTGATTGAGCCTGCTGTGAA+GGG | - | chr8.2:38244826-38244845 | MS.gene053308:intron | 50.0% | |
| TGTGTGTAACTGGAGCAGGT+GGG | - | chr8.2:38243143-38243162 | MS.gene053308:CDS | 50.0% | |
| TTAGCAGTTCCCTTCACAGC+AGG | + | chr8.2:38244838-38244857 | None:intergenic | 50.0% | |
| ! | AAGGTACAGGGCTAGCAACA+TGG | + | chr8.2:38244650-38244669 | None:intergenic | 50.0% |
| ! | CAGGTGGGTTTGTAGCATCA+TGG | - | chr8.2:38243158-38243177 | MS.gene053308:CDS | 50.0% |
| ! | GCTTCACCGCAATCGTGTTT+TGG | - | chr8.2:38245506-38245525 | MS.gene053308:intron | 50.0% |
| !!! | CGCAATCGTGTTTTGGGAGT+CGG | - | chr8.2:38245513-38245532 | MS.gene053308:intron | 50.0% |
| ACAGAGACGCGAAATCCCGA+AGG | - | chr8.2:38244265-38244284 | MS.gene053308:intron | 55.0% | |
| GTGTGTGTAACTGGAGCAGG+TGG | - | chr8.2:38243142-38243161 | MS.gene053308:CDS | 55.0% | |
| GATTGCGGTGAAGCGGGTAG+TGG | + | chr8.2:38245500-38245519 | None:intergenic | 60.0% | |
| ! | CGGTGAAGCGGGTAGTGGTA+TGG | + | chr8.2:38245495-38245514 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 38243086 | 38245887 | 38243086 | ID=MS.gene053308 |
| chr8.2 | mRNA | 38243086 | 38245887 | 38243086 | ID=MS.gene053308.t1;Parent=MS.gene053308 |
| chr8.2 | exon | 38245735 | 38245887 | 38245735 | ID=MS.gene053308.t1.exon1;Parent=MS.gene053308.t1 |
| chr8.2 | CDS | 38245735 | 38245887 | 38245735 | ID=cds.MS.gene053308.t1;Parent=MS.gene053308.t1 |
| chr8.2 | exon | 38244281 | 38244450 | 38244281 | ID=MS.gene053308.t1.exon2;Parent=MS.gene053308.t1 |
| chr8.2 | CDS | 38244281 | 38244450 | 38244281 | ID=cds.MS.gene053308.t1;Parent=MS.gene053308.t1 |
| chr8.2 | exon | 38243968 | 38244153 | 38243968 | ID=MS.gene053308.t1.exon3;Parent=MS.gene053308.t1 |
| chr8.2 | CDS | 38243968 | 38244153 | 38243968 | ID=cds.MS.gene053308.t1;Parent=MS.gene053308.t1 |
| chr8.2 | exon | 38243627 | 38243789 | 38243627 | ID=MS.gene053308.t1.exon4;Parent=MS.gene053308.t1 |
| chr8.2 | CDS | 38243627 | 38243789 | 38243627 | ID=cds.MS.gene053308.t1;Parent=MS.gene053308.t1 |
| chr8.2 | exon | 38243086 | 38243272 | 38243086 | ID=MS.gene053308.t1.exon5;Parent=MS.gene053308.t1 |
| chr8.2 | CDS | 38243086 | 38243272 | 38243086 | ID=cds.MS.gene053308.t1;Parent=MS.gene053308.t1 |
| Gene Sequence |
| Protein sequence |
