Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053394.t1 | O48905.1 | 100 | 332 | 0 | 0 | 1 | 332 | 1 | 332 | 5.20E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053394.t1 | O48905 | 100.0 | 332 | 0 | 0 | 1 | 332 | 1 | 332 | 1.2e-185 | 650.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053394.t1 | B7FJQ4 | 99.1 | 332 | 3 | 0 | 1 | 332 | 1 | 332 | 1.2e-181 | 645.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053394 | MS.gene68423 | PPI |
| MS.gene053394 | MS.gene21413 | PPI |
| MS.gene053394 | MS.gene032247 | PPI |
| MS.gene005767 | MS.gene053394 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053394.t1 | MTR_1g043040 | 99.096 | 332 | 3 | 0 | 1 | 332 | 1 | 332 | 0.0 | 679 |
| MS.gene053394.t1 | MTR_1g076130 | 92.771 | 332 | 24 | 0 | 1 | 332 | 1 | 332 | 0.0 | 619 |
| MS.gene053394.t1 | MTR_8g005980 | 85.106 | 329 | 49 | 0 | 3 | 331 | 85 | 413 | 0.0 | 565 |
| MS.gene053394.t1 | MTR_1g090730 | 39.210 | 329 | 193 | 4 | 3 | 328 | 92 | 416 | 9.22e-73 | 231 |
| MS.gene053394.t1 | MTR_1g090730 | 40.741 | 270 | 156 | 1 | 3 | 272 | 92 | 357 | 1.90e-61 | 201 |
| MS.gene053394.t1 | MTR_7g037650 | 73.913 | 46 | 12 | 0 | 15 | 60 | 24 | 69 | 6.63e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053394.t1 | AT1G04410 | 89.759 | 332 | 34 | 0 | 1 | 332 | 1 | 332 | 0.0 | 604 |
| MS.gene053394.t1 | AT5G43330 | 89.759 | 332 | 34 | 0 | 1 | 332 | 1 | 332 | 0.0 | 602 |
| MS.gene053394.t1 | AT5G56720 | 73.795 | 332 | 87 | 0 | 1 | 332 | 40 | 371 | 0.0 | 517 |
| MS.gene053394.t1 | AT5G58330 | 41.337 | 329 | 186 | 4 | 3 | 328 | 97 | 421 | 1.52e-78 | 247 |
| MS.gene053394.t1 | AT5G58330 | 41.337 | 329 | 186 | 4 | 3 | 328 | 96 | 420 | 1.58e-78 | 247 |
| MS.gene053394.t1 | AT5G58330 | 41.270 | 315 | 178 | 4 | 17 | 328 | 2 | 312 | 1.20e-75 | 236 |
Find 94 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAATCTTTCGGAAATT+TGG | 0.094023 | 1.4:+27361518 | None:intergenic |
| CACATTCGCGATTGGGTTCT+TGG | 0.190578 | 1.4:-27360896 | MS.gene053394:CDS |
| GCTGCATTTCCACTTCTTAA+AGG | 0.217111 | 1.4:-27363250 | MS.gene053394:intron |
| AAACAAGAAATGTTTCTTTC+TGG | 0.220813 | 1.4:+27361571 | None:intergenic |
| GCTGACTGAAGAAAAGAATT+TGG | 0.249625 | 1.4:-27359963 | MS.gene053394:CDS |
| GTCATTGAATGGAGTTAAAA+TGG | 0.260659 | 1.4:-27363284 | MS.gene053394:CDS |
| ATGTAAAGAATGTCATAATC+TGG | 0.320654 | 1.4:-27361483 | MS.gene053394:CDS |
| CATGGTTGACATCAGGATAC+TGG | 0.330089 | 1.4:+27361443 | None:intergenic |
| ATGTTTCTTTCTGGAATAGA+TGG | 0.330607 | 1.4:+27361580 | None:intergenic |
| AACTTGAACATTCAATCTTT+CGG | 0.331338 | 1.4:+27361510 | None:intergenic |
| CGGACGGGCTTCTCCCCAGC+TGG | 0.336380 | 1.4:+27361406 | None:intergenic |
| AAGAACACGAACTGGGTCTT+TGG | 0.339916 | 1.4:+27364323 | None:intergenic |
| TGTCAAATTTCAGGGCAAAT+TGG | 0.341571 | 1.4:-27363400 | MS.gene053394:intron |
| ACGTGGTGCTGCAATTATTA+AGG | 0.343639 | 1.4:-27360966 | MS.gene053394:CDS |
| GGCTCACTCTTGCCTCTCTT+AGG | 0.351901 | 1.4:-27359942 | None:intergenic |
| ATCAATGCATTGGTGTTTGC+TGG | 0.355483 | 1.4:+27361619 | None:intergenic |
| TGACTAGACTAGATCACAAT+AGG | 0.357382 | 1.4:-27361549 | MS.gene053394:CDS |
| ACTAGATCACAATAGGGCTT+TGG | 0.385573 | 1.4:-27361542 | MS.gene053394:CDS |
| TGAAGAATCACGGGTTGATC+TGG | 0.385920 | 1.4:+27363334 | None:intergenic |
| CTAGATCACAATAGGGCTTT+GGG | 0.392356 | 1.4:-27361541 | MS.gene053394:CDS |
| CTTGTGACCACATTCGCGAT+TGG | 0.397092 | 1.4:-27360904 | MS.gene053394:CDS |
| TTGTGACCACATTCGCGATT+GGG | 0.424378 | 1.4:-27360903 | MS.gene053394:CDS |
| ATCACTCCCCTAGCAATCAT+AGG | 0.425010 | 1.4:+27363364 | None:intergenic |
| TTAGGGTACCTTCGTTTCAA+TGG | 0.430895 | 1.4:-27360780 | MS.gene053394:intron |
| CACCAATGCATTGATCTTGA+AGG | 0.441335 | 1.4:-27361611 | MS.gene053394:CDS |
| GGACGGGCTTCTCCCCAGCT+GGG | 0.441906 | 1.4:+27361407 | None:intergenic |
| AAAAGAAGGTATGGAGAGGA+AGG | 0.445651 | 1.4:-27363016 | MS.gene053394:CDS |
| CCAGTTCGTGTTCTTGTCAC+TGG | 0.450164 | 1.4:-27364315 | MS.gene053394:CDS |
| CTCTTGTCCCTATGATTGCT+AGG | 0.451223 | 1.4:-27363372 | MS.gene053394:CDS |
| CCAGTGACAAGAACACGAAC+TGG | 0.452334 | 1.4:+27364315 | None:intergenic |
| TAGGGTACCTTCGTTTCAAT+GGG | 0.465774 | 1.4:-27360779 | MS.gene053394:CDS |
| ACAGTTGCATGGTTGACATC+AGG | 0.470853 | 1.4:+27361436 | None:intergenic |
| AACTTGTTTCCGACGATGCA+TGG | 0.473611 | 1.4:-27361381 | MS.gene053394:intron |
| CAATCCAGATGGTACATTGT+AGG | 0.475070 | 1.4:+27360739 | None:intergenic |
| GCAACTGTTAACACCCCAGC+TGG | 0.476508 | 1.4:-27361421 | MS.gene053394:CDS |
| TCACCATTGGCACAGGTGAC+AGG | 0.479094 | 1.4:+27360704 | None:intergenic |
| GGTTCCTACAATGTACCATC+TGG | 0.482781 | 1.4:-27360743 | MS.gene053394:CDS |
| TTGGGTTCTTGGAACTCCCC+AGG | 0.483482 | 1.4:-27360885 | MS.gene053394:intron |
| TGTAAAGAATGTCATAATCT+GGG | 0.486354 | 1.4:-27361482 | MS.gene053394:CDS |
| TGAGTTCTCAAGGAAGAAGT+TGG | 0.488677 | 1.4:-27360002 | MS.gene053394:CDS |
| CCATTCAATGACTCTGCTGC+AGG | 0.499494 | 1.4:+27363295 | None:intergenic |
| GGTGAATGGAAAATAGTTCA+AGG | 0.505213 | 1.4:-27360686 | MS.gene053394:intron |
| TTCCTTCAAGATCAATGCAT+TGG | 0.507360 | 1.4:+27361609 | None:intergenic |
| TAAGTTATACCTTTAAGAAG+TGG | 0.509514 | 1.4:+27363241 | None:intergenic |
| CGGAGTCAATATTGCTGTCA+TGG | 0.510327 | 1.4:-27363055 | MS.gene053394:CDS |
| GTTCTTGTCACTGGTGCCGC+AGG | 0.510375 | 1.4:-27364306 | MS.gene053394:intron |
| TTCCCTGTCACCTGTGCCAA+TGG | 0.517722 | 1.4:-27360707 | MS.gene053394:CDS |
| TGGCAGCAGCATGCTTCTCA+AGG | 0.517868 | 1.4:+27362947 | None:intergenic |
| TGTCTCTATATACAAGTCTC+AGG | 0.520032 | 1.4:-27362977 | MS.gene053394:CDS |
| TCTTGTCCCTATGATTGCTA+GGG | 0.522049 | 1.4:-27363371 | MS.gene053394:CDS |
| ATCAAGCATGTGAAGAATCA+CGG | 0.524158 | 1.4:+27363324 | None:intergenic |
| AATATTGCTGTCATGGTTGG+TGG | 0.527412 | 1.4:-27363048 | MS.gene053394:CDS |
| GACTAGACTAGATCACAATA+GGG | 0.527987 | 1.4:-27361548 | MS.gene053394:CDS |
| TTTCCATTCACCATTGGCAC+AGG | 0.528068 | 1.4:+27360697 | None:intergenic |
| CCTGCAGCAGAGTCATTGAA+TGG | 0.529172 | 1.4:-27363295 | MS.gene053394:CDS |
| ATTCCCAAGAAAAGAAGGTA+TGG | 0.532607 | 1.4:-27363025 | MS.gene053394:CDS |
| TCAATGGGAGTGTATTCTGA+TGG | 0.534652 | 1.4:-27360764 | MS.gene053394:CDS |
| TCACCTGTGCCAATGGTGAA+TGG | 0.535072 | 1.4:-27360700 | MS.gene053394:CDS |
| GTCAATATTGCTGTCATGGT+TGG | 0.540892 | 1.4:-27363051 | MS.gene053394:CDS |
| CACCATTGGCACAGGTGACA+GGG | 0.547097 | 1.4:+27360705 | None:intergenic |
| TGGAGTTAAAATGGAGTTGG+TGG | 0.549300 | 1.4:-27363275 | MS.gene053394:CDS |
| GAAAGGGATTACCTTGCAGT+TGG | 0.551890 | 1.4:+27362927 | None:intergenic |
| TTTCAATTGATGAGTTCTCA+AGG | 0.554558 | 1.4:-27360012 | MS.gene053394:CDS |
| GGTGGATTCCCAAGAAAAGA+AGG | 0.558887 | 1.4:-27363030 | MS.gene053394:CDS |
| TCAAGCATGTGAAGAATCAC+GGG | 0.563379 | 1.4:+27363325 | None:intergenic |
| GACGGGCTTCTCCCCAGCTG+GGG | 0.574611 | 1.4:+27361408 | None:intergenic |
| GAATGGAGTTAAAATGGAGT+TGG | 0.576011 | 1.4:-27363278 | MS.gene053394:CDS |
| TCACTCCCCTAGCAATCATA+GGG | 0.576220 | 1.4:+27363365 | None:intergenic |
| CAAGAACCCAATCGCGAATG+TGG | 0.578729 | 1.4:+27360897 | None:intergenic |
| GATGTTGTTGAGGCATGCAC+CGG | 0.579449 | 1.4:-27363075 | MS.gene053394:CDS |
| TCAATGCATTGGTGTTTGCT+GGG | 0.583030 | 1.4:+27361620 | None:intergenic |
| ATTGCTAGGGGAGTGATGCT+CGG | 0.583162 | 1.4:-27363358 | MS.gene053394:CDS |
| GCATGCTGCTGCCAACTGCA+AGG | 0.584268 | 1.4:-27362938 | MS.gene053394:intron |
| CAACTGTTAACACCCCAGCT+GGG | 0.586874 | 1.4:-27361420 | MS.gene053394:CDS |
| ATGGTTGACATCAGGATACT+GGG | 0.588881 | 1.4:+27361444 | None:intergenic |
| CTGGGGTGTTAACAGTTGCA+TGG | 0.591846 | 1.4:+27361425 | None:intergenic |
| TCGGAAACAAGTTGACGGAC+GGG | 0.596905 | 1.4:+27361391 | None:intergenic |
| GTCGGAAACAAGTTGACGGA+CGG | 0.602916 | 1.4:+27361390 | None:intergenic |
| TGCTACAACCGATGTTGTTG+AGG | 0.602981 | 1.4:-27363085 | MS.gene053394:CDS |
| GGCAGCAGCATGCTTCTCAA+GGG | 0.606803 | 1.4:+27362948 | None:intergenic |
| AAAATAAAGCAGCCTAAGAG+AGG | 0.609879 | 1.4:+27359930 | None:intergenic |
| CAGTGACAAGAACACGAACT+GGG | 0.614915 | 1.4:+27364316 | None:intergenic |
| CATCGTCGGAAACAAGTTGA+CGG | 0.615176 | 1.4:+27361386 | None:intergenic |
| CAAGAAAAGAAGGTATGGAG+AGG | 0.633211 | 1.4:-27363020 | MS.gene053394:CDS |
| TGTGATATACCATGCATCGT+CGG | 0.641057 | 1.4:+27361372 | None:intergenic |
| CTTGTCCCTATGATTGCTAG+GGG | 0.642364 | 1.4:-27363370 | MS.gene053394:CDS |
| AACTGTTAACACCCCAGCTG+GGG | 0.642403 | 1.4:-27361419 | MS.gene053394:CDS |
| AATGAATAGATCAATCCAGA+TGG | 0.645749 | 1.4:+27360728 | None:intergenic |
| GTAAAGAATGTCATAATCTG+GGG | 0.647423 | 1.4:-27361481 | MS.gene053394:CDS |
| CATGACAGCAATATTGACTC+CGG | 0.647831 | 1.4:+27363056 | None:intergenic |
| GGTGCATGCCTCAACAACAT+CGG | 0.650776 | 1.4:+27363077 | None:intergenic |
| ATACACTCCCATTGAAACGA+AGG | 0.652020 | 1.4:+27360772 | None:intergenic |
| AGCACCACGTTGTTGAACAG+TGG | 0.672850 | 1.4:+27360979 | None:intergenic |
| ATTTCCACTGTTCAACAACG+TGG | 0.687346 | 1.4:-27360983 | MS.gene053394:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTATTTTTATTTTTT+TGG | - | chr1.4:27362577-27362596 | MS.gene053394:intron | 0.0% |
| !! | AATATTGTATATATAGAAAA+AGG | - | chr1.4:27361463-27361482 | MS.gene053394:CDS | 10.0% |
| !! | ATATTGTATATATAGAAAAA+GGG | - | chr1.4:27361464-27361483 | MS.gene053394:CDS | 10.0% |
| !!! | TTTTTCTATATATACAATAT+TGG | + | chr1.4:27361464-27361483 | None:intergenic | 10.0% |
| !! | AGTTAATGAAACATTTAATA+CGG | + | chr1.4:27361059-27361078 | None:intergenic | 15.0% |
| !! | ATTATACAATATACTACATA+TGG | + | chr1.4:27361759-27361778 | None:intergenic | 15.0% |
| !! | CAAAGAATAACAAATTTATT+AGG | + | chr1.4:27362073-27362092 | None:intergenic | 15.0% |
| !! | CTAATTTAAATTTGATCTAA+TGG | - | chr1.4:27360798-27360817 | MS.gene053394:intron | 15.0% |
| !! | GATCTTTATAAAATTGAAAA+TGG | + | chr1.4:27361793-27361812 | None:intergenic | 15.0% |
| !! | TACAAAAATAACAGTTAAAA+AGG | - | chr1.4:27363169-27363188 | MS.gene053394:intron | 15.0% |
| !! | TACAAAATTTAACTCAAATT+TGG | + | chr1.4:27364199-27364218 | None:intergenic | 15.0% |
| !! | TATATTCAATCATAGTTTAT+TGG | + | chr1.4:27362247-27362266 | None:intergenic | 15.0% |
| !! | TTATTAGGAAAAAAAAAACA+GGG | + | chr1.4:27362058-27362077 | None:intergenic | 15.0% |
| !! | TTCTAATGAAATTGAAATTA+TGG | - | chr1.4:27363965-27363984 | MS.gene053394:intron | 15.0% |
| !! | TTTATTAGGAAAAAAAAAAC+AGG | + | chr1.4:27362059-27362078 | None:intergenic | 15.0% |
| !!! | AATTTGAGTTAAATTTTGTA+CGG | - | chr1.4:27364199-27364218 | MS.gene053394:intron | 15.0% |
| !!! | CTAATAAATTTGTTATTCTT+TGG | - | chr1.4:27362071-27362090 | MS.gene053394:intron | 15.0% |
| !!! | TAATAACAGAATTTTATGTA+AGG | + | chr1.4:27361995-27362014 | None:intergenic | 15.0% |
| !!! | TCAATTTTGTTTAAAAAACT+TGG | + | chr1.4:27361573-27361592 | None:intergenic | 15.0% |
| !!! | TGATTATTGATAATGTTATA+TGG | + | chr1.4:27361719-27361738 | None:intergenic | 15.0% |
| !!! | TTTTAAGTAAAGATTCAATT+TGG | - | chr1.4:27360347-27360366 | MS.gene053394:intron | 15.0% |
| !! | AAAAAACTTAGTTGTTGTAT+CGG | - | chr1.4:27362193-27362212 | MS.gene053394:intron | 20.0% |
| !! | AAAAAATCATCAGAAAAACA+TGG | + | chr1.4:27360097-27360116 | None:intergenic | 20.0% |
| !! | AAAAACATAGATCAAAACAT+GGG | + | chr1.4:27360046-27360065 | None:intergenic | 20.0% |
| !! | ACTAGAAAAAGAATATAAAC+TGG | + | chr1.4:27363992-27364011 | None:intergenic | 20.0% |
| !! | AGATCATAAATAGTTAAGAA+TGG | + | chr1.4:27363039-27363058 | None:intergenic | 20.0% |
| !! | ATATAAAAAAGTGACTAATG+TGG | + | chr1.4:27360421-27360440 | None:intergenic | 20.0% |
| !! | ATCATATGGATATATGAATT+AGG | + | chr1.4:27362466-27362485 | None:intergenic | 20.0% |
| !! | TTTAGAAAATACATGAGTAA+AGG | + | chr1.4:27360584-27360603 | None:intergenic | 20.0% |
| !!! | AAATGTAATGATGTTTTTTG+AGG | + | chr1.4:27361538-27361557 | None:intergenic | 20.0% |
| !!! | ATGGTTTGTAAAAACAAAAA+AGG | + | chr1.4:27363726-27363745 | None:intergenic | 20.0% |
| !!! | ATTTTTAGACGTTGTTTTAT+AGG | - | chr1.4:27362948-27362967 | MS.gene053394:CDS | 20.0% |
| !!! | GTTTGGATTTATTTTTTTGT+CGG | - | chr1.4:27360514-27360533 | MS.gene053394:intron | 20.0% |
| !!! | TAAATGTTTCATTAACTTGA+TGG | - | chr1.4:27361062-27361081 | MS.gene053394:intron | 20.0% |
| !!! | TTTGGATTTATTTTTTTGTC+GGG | - | chr1.4:27360515-27360534 | MS.gene053394:intron | 20.0% |
| !!! | TTTTTTGGAAAATTTACAGA+AGG | - | chr1.4:27362592-27362611 | MS.gene053394:intron | 20.0% |
| ! | AAAAGTTGCATTCTCATAAT+TGG | - | chr1.4:27360699-27360718 | MS.gene053394:CDS | 25.0% |
| ! | AAACAAGAAATGTTTCTTTC+TGG | + | chr1.4:27362702-27362721 | None:intergenic | 25.0% |
| ! | AACTTGAACATTCAATCTTT+CGG | + | chr1.4:27362763-27362782 | None:intergenic | 25.0% |
| ! | AATAACAGTTAAAAAGGAAC+TGG | - | chr1.4:27363175-27363194 | MS.gene053394:intron | 25.0% |
| ! | AATCGATATGAACTACTAAT+TGG | + | chr1.4:27361928-27361947 | None:intergenic | 25.0% |
| ! | AATTAGACGATCTAGATTAA+TGG | + | chr1.4:27360784-27360803 | None:intergenic | 25.0% |
| ! | ACCAAGAAATGAAATGTTAT+AGG | + | chr1.4:27361823-27361842 | None:intergenic | 25.0% |
| ! | ACCTATAACATTTCATTTCT+TGG | - | chr1.4:27361819-27361838 | MS.gene053394:intron | 25.0% |
| ! | ATAACAGTTAAAAAGGAACT+GGG | - | chr1.4:27363176-27363195 | MS.gene053394:intron | 25.0% |
| ! | ATAATACCCTTCACTATTTA+TGG | + | chr1.4:27363083-27363102 | None:intergenic | 25.0% |
| ! | ATAATGTTCTGTCAAATTTC+AGG | - | chr1.4:27360861-27360880 | MS.gene053394:intron | 25.0% |
| ! | ATATGGATATATGAATTAGG+TGG | + | chr1.4:27362463-27362482 | None:intergenic | 25.0% |
| ! | ATGAATAAAATTAGACTCCT+TGG | + | chr1.4:27362510-27362529 | None:intergenic | 25.0% |
| ! | ATGTAAAGAATGTCATAATC+TGG | - | chr1.4:27362787-27362806 | MS.gene053394:intron | 25.0% |
| ! | CAAAAACATAGATCAAAACA+TGG | + | chr1.4:27360047-27360066 | None:intergenic | 25.0% |
| ! | GATAGAAAATGCATACAAAA+GGG | + | chr1.4:27361906-27361925 | None:intergenic | 25.0% |
| ! | TAATGAAACATTTAATACGG+AGG | + | chr1.4:27361056-27361075 | None:intergenic | 25.0% |
| ! | TAATGTTCTGTCAAATTTCA+GGG | - | chr1.4:27360862-27360881 | MS.gene053394:intron | 25.0% |
| ! | TACTTTAGTTGAAAATGTAG+AGG | + | chr1.4:27363820-27363839 | None:intergenic | 25.0% |
| ! | TGTAAAGAATGTCATAATCT+GGG | - | chr1.4:27362788-27362807 | MS.gene053394:intron | 25.0% |
| ! | TGTGTGAAATTATTTGTTTC+AGG | - | chr1.4:27361156-27361175 | MS.gene053394:intron | 25.0% |
| ! | TTATTTGAAAACAAGCAGTT+TGG | - | chr1.4:27362545-27362564 | MS.gene053394:intron | 25.0% |
| ! | TTTGAATGTCTACCAAAATA+TGG | + | chr1.4:27361621-27361640 | None:intergenic | 25.0% |
| !! | AATTTTATGTAAGGTCAGAT+TGG | + | chr1.4:27361986-27362005 | None:intergenic | 25.0% |
| !! | TAAGTTATACCTTTAAGAAG+TGG | + | chr1.4:27361032-27361051 | None:intergenic | 25.0% |
| !! | TCTTTTCCATTGTAATGTTA+GGG | - | chr1.4:27363473-27363492 | MS.gene053394:intron | 25.0% |
| !! | TTCTTTTCCATTGTAATGTT+AGG | - | chr1.4:27363472-27363491 | MS.gene053394:intron | 25.0% |
| !! | TTGTATTCTTTTGCAATTTC+TGG | - | chr1.4:27364025-27364044 | MS.gene053394:intron | 25.0% |
| !! | TTTCTTGGTAATAAAACTTG+TGG | - | chr1.4:27361834-27361853 | MS.gene053394:intron | 25.0% |
| !!! | CTGCTTGTTTTCAAATAAAA+AGG | + | chr1.4:27362543-27362562 | None:intergenic | 25.0% |
| !!! | TAAGTTTTTTGCGACTAAAT+GGG | + | chr1.4:27362183-27362202 | None:intergenic | 25.0% |
| !!! | TTAGTCACTTTTTTATATCG+AGG | - | chr1.4:27360423-27360442 | MS.gene053394:intron | 25.0% |
| !!! | TTGGATTTATTTTTTTGTCG+GGG | - | chr1.4:27360516-27360535 | MS.gene053394:intron | 25.0% |
| !!! | TTTTCTCTATTTAGGTTGAA+TGG | - | chr1.4:27363257-27363276 | MS.gene053394:CDS | 25.0% |
| AAATAAATCCAAACTAGTGC+CGG | + | chr1.4:27360508-27360527 | None:intergenic | 30.0% | |
| AAATTAAAATGTAGCCAACC+TGG | + | chr1.4:27363406-27363425 | None:intergenic | 30.0% | |
| AAGTCTGAGTTTATGATGAA+AGG | + | chr1.4:27361363-27361382 | None:intergenic | 30.0% | |
| AATGAATAGATCAATCCAGA+TGG | + | chr1.4:27363545-27363564 | None:intergenic | 30.0% | |
| AATGAATCATGTGACTTTAG+AGG | - | chr1.4:27364134-27364153 | MS.gene053394:intron | 30.0% | |
| AATGTCTACCAAAATATGGT+AGG | + | chr1.4:27361617-27361636 | None:intergenic | 30.0% | |
| AATTAAAATGTAGCCAACCT+GGG | + | chr1.4:27363405-27363424 | None:intergenic | 30.0% | |
| AATTTGATCTAATGGCATGA+AGG | - | chr1.4:27360806-27360825 | MS.gene053394:intron | 30.0% | |
| ACCTGTATATTCACTTTACT+CGG | - | chr1.4:27363690-27363709 | MS.gene053394:intron | 30.0% | |
| AGAAAAACATGGTTAGATCA+TGG | + | chr1.4:27360086-27360105 | None:intergenic | 30.0% | |
| AGTCTGAGTTTATGATGAAA+GGG | + | chr1.4:27361362-27361381 | None:intergenic | 30.0% | |
| ATAACAAAAACCGACAACTT+AGG | + | chr1.4:27363788-27363807 | None:intergenic | 30.0% | |
| ATGTCTACCAAAATATGGTA+GGG | + | chr1.4:27361616-27361635 | None:intergenic | 30.0% | |
| ATTTGATCTAATGGCATGAA+GGG | - | chr1.4:27360807-27360826 | MS.gene053394:intron | 30.0% | |
| CAACCTAAATAGAGAAAAGT+TGG | + | chr1.4:27363255-27363274 | None:intergenic | 30.0% | |
| CATTCAATCTTTCGGAAATT+TGG | + | chr1.4:27362755-27362774 | None:intergenic | 30.0% | |
| CGATCTGTCATAATGAATTA+GGG | + | chr1.4:27360459-27360478 | None:intergenic | 30.0% | |
| GGATAGAAAATGCATACAAA+AGG | + | chr1.4:27361907-27361926 | None:intergenic | 30.0% | |
| GTAAAGAATGTCATAATCTG+GGG | - | chr1.4:27362789-27362808 | MS.gene053394:intron | 30.0% | |
| GTCATTGAATGGAGTTAAAA+TGG | - | chr1.4:27360986-27361005 | MS.gene053394:CDS | 30.0% | |
| TAACAGTTAAAAAGGAACTG+GGG | - | chr1.4:27363177-27363196 | MS.gene053394:intron | 30.0% | |
| TATTTATGGCAGAGAGTAAT+AGG | + | chr1.4:27363069-27363088 | None:intergenic | 30.0% | |
| TCGATCTGTCATAATGAATT+AGG | + | chr1.4:27360460-27360479 | None:intergenic | 30.0% | |
| TCTTCTACTATAGAACACTA+TGG | - | chr1.4:27362139-27362158 | MS.gene053394:intron | 30.0% | |
| TTCAACACTTATGATTGTGA+TGG | + | chr1.4:27363754-27363773 | None:intergenic | 30.0% | |
| TTCGATCTTGATCTGTTAAT+GGG | - | chr1.4:27360163-27360182 | MS.gene053394:intron | 30.0% | |
| TTTCAATTGATGAGTTCTCA+AGG | - | chr1.4:27364258-27364277 | MS.gene053394:intron | 30.0% | |
| TTTCGATCTTGATCTGTTAA+TGG | - | chr1.4:27360162-27360181 | MS.gene053394:intron | 30.0% | |
| TTTCGCAATGAAGACATTAA+GGG | - | chr1.4:27362285-27362304 | MS.gene053394:intron | 30.0% | |
| ! | AACTATTTTCCATTCACCAT+TGG | + | chr1.4:27363582-27363601 | None:intergenic | 30.0% |
| ! | GCAAATTTTCACATGAAATC+AGG | - | chr1.4:27362423-27362442 | MS.gene053394:intron | 30.0% |
| ! | GTTCCAACTTTTCTCTATTT+AGG | - | chr1.4:27363249-27363268 | MS.gene053394:intron | 30.0% |
| ! | TCAAAATCCCTACCATATTT+TGG | - | chr1.4:27361606-27361625 | MS.gene053394:CDS | 30.0% |
| ! | TTTTCGCAATGAAGACATTA+AGG | - | chr1.4:27362284-27362303 | MS.gene053394:intron | 30.0% |
| !! | ATGTTTCTTTCTGGAATAGA+TGG | + | chr1.4:27362693-27362712 | None:intergenic | 30.0% |
| !! | GTTTTATTGACAGTACAGAA+AGG | + | chr1.4:27363890-27363909 | None:intergenic | 30.0% |
| !!! | AAGTTTTTTGCGACTAAATG+GGG | + | chr1.4:27362182-27362201 | None:intergenic | 30.0% |
| !!! | CTAAGTTTTTTGCGACTAAA+TGG | + | chr1.4:27362184-27362203 | None:intergenic | 30.0% |
| !!! | TTTTGGTGTTTGTTGATAAC+TGG | - | chr1.4:27363661-27363680 | MS.gene053394:intron | 30.0% |
| AAAATCGTGAGGGAACAAAT+TGG | - | chr1.4:27360557-27360576 | MS.gene053394:intron | 35.0% | |
| AAACAGTAGAGAAGAGATCA+TGG | + | chr1.4:27360004-27360023 | None:intergenic | 35.0% | |
| AAATCGTGAGGGAACAAATT+GGG | - | chr1.4:27360558-27360577 | MS.gene053394:intron | 35.0% | |
| AACAAACACCAAAAACTGAG+GGG | + | chr1.4:27363655-27363674 | None:intergenic | 35.0% | |
| AACAGTTAAAAAGGAACTGG+GGG | - | chr1.4:27363178-27363197 | MS.gene053394:intron | 35.0% | |
| AACCCACTACACATGAAATT+TGG | + | chr1.4:27360645-27360664 | None:intergenic | 35.0% | |
| ACCGAGTAAAGTGAATATAC+AGG | + | chr1.4:27363694-27363713 | None:intergenic | 35.0% | |
| AGACGATCTAGATTAATGGT+CGG | + | chr1.4:27360780-27360799 | None:intergenic | 35.0% | |
| ATCAAGCATGTGAAGAATCA+CGG | + | chr1.4:27360949-27360968 | None:intergenic | 35.0% | |
| ATCACATGGACTTCATCATA+TGG | + | chr1.4:27362480-27362499 | None:intergenic | 35.0% | |
| ATTAAAATGTAGCCAACCTG+GGG | + | chr1.4:27363404-27363423 | None:intergenic | 35.0% | |
| ATTCCCAAGAAAAGAAGGTA+TGG | - | chr1.4:27361245-27361264 | MS.gene053394:intron | 35.0% | |
| CAACAAACACCAAAAACTGA+GGG | + | chr1.4:27363656-27363675 | None:intergenic | 35.0% | |
| CTAATGTGGATTTATCGTGT+CGG | + | chr1.4:27360407-27360426 | None:intergenic | 35.0% | |
| CTTTGTATCCAATGTTGCAA+TGG | - | chr1.4:27361389-27361408 | MS.gene053394:CDS | 35.0% | |
| GAAAAGAAAATAAGCCGATC+TGG | + | chr1.4:27363460-27363479 | None:intergenic | 35.0% | |
| GAAAGTCCTGTGGATAAAAA+AGG | + | chr1.4:27364242-27364261 | None:intergenic | 35.0% | |
| GAATGGAGTTAAAATGGAGT+TGG | - | chr1.4:27360992-27361011 | MS.gene053394:CDS | 35.0% | |
| GACTAGACTAGATCACAATA+GGG | - | chr1.4:27362722-27362741 | MS.gene053394:intron | 35.0% | |
| GCTGACTGAAGAAAAGAATT+TGG | - | chr1.4:27364307-27364326 | MS.gene053394:CDS | 35.0% | |
| GGTGAATGGAAAATAGTTCA+AGG | - | chr1.4:27363584-27363603 | MS.gene053394:intron | 35.0% | |
| GTCCAAATTTCATGTGTAGT+GGG | - | chr1.4:27360640-27360659 | MS.gene053394:intron | 35.0% | |
| TAATGTGGATTTATCGTGTC+GGG | + | chr1.4:27360406-27360425 | None:intergenic | 35.0% | |
| TATATAGAAAAAGGGAAGCC+CGG | - | chr1.4:27361472-27361491 | MS.gene053394:CDS | 35.0% | |
| TCAACAAACACCAAAAACTG+AGG | + | chr1.4:27363657-27363676 | None:intergenic | 35.0% | |
| TCACATGAAATCAGGTGTAT+GGG | - | chr1.4:27362431-27362450 | MS.gene053394:intron | 35.0% | |
| TCTCTGCCATAAATAGTGAA+GGG | - | chr1.4:27363074-27363093 | MS.gene053394:CDS | 35.0% | |
| TGACTAGACTAGATCACAAT+AGG | - | chr1.4:27362721-27362740 | MS.gene053394:intron | 35.0% | |
| TGTCAAATTTCAGGGCAAAT+TGG | - | chr1.4:27360870-27360889 | MS.gene053394:intron | 35.0% | |
| TGTCCAAATTTCATGTGTAG+TGG | - | chr1.4:27360639-27360658 | MS.gene053394:intron | 35.0% | |
| TGTCTCTATATACAAGTCTC+AGG | - | chr1.4:27361293-27361312 | MS.gene053394:intron | 35.0% | |
| TTCACATGAAATCAGGTGTA+TGG | - | chr1.4:27362430-27362449 | MS.gene053394:intron | 35.0% | |
| TTCCTTCAAGATCAATGCAT+TGG | + | chr1.4:27362664-27362683 | None:intergenic | 35.0% | |
| TTCTGTATTTGCTTCCAGAT+CGG | - | chr1.4:27363443-27363462 | MS.gene053394:intron | 35.0% | |
| TTGAAATATCTTGCAGGTTC+TGG | - | chr1.4:27362617-27362636 | MS.gene053394:intron | 35.0% | |
| ! | AAATGTTTCCCCTCAGTTTT+TGG | - | chr1.4:27363644-27363663 | MS.gene053394:intron | 35.0% |
| ! | AAGGTACCCTAACATTACAA+TGG | + | chr1.4:27363482-27363501 | None:intergenic | 35.0% |
| ! | AATGGACTTTGTCATGTCAT+CGG | - | chr1.4:27361407-27361426 | MS.gene053394:CDS | 35.0% |
| ! | ACACTTATGATTGTGATGGA+TGG | + | chr1.4:27363750-27363769 | None:intergenic | 35.0% |
| ! | TCTCCATACCTTCTTTTCTT+GGG | + | chr1.4:27361251-27361270 | None:intergenic | 35.0% |
| ! | TCTCTACTGTTTCTTCACTT+TGG | - | chr1.4:27360012-27360031 | MS.gene053394:CDS | 35.0% |
| !! | AAGGCTTTGAAATATCTTGC+AGG | - | chr1.4:27362611-27362630 | MS.gene053394:intron | 35.0% |
| !! | TATGATTGTGATGGATGGTA+TGG | + | chr1.4:27363745-27363764 | None:intergenic | 35.0% |
| !! | TCTTGATCTGTTAATGGGTT+CGG | - | chr1.4:27360168-27360187 | MS.gene053394:intron | 35.0% |
| !!! | TCTTCACCTTTTTTATCCAC+AGG | - | chr1.4:27364233-27364252 | MS.gene053394:intron | 35.0% |
| !!! | TTTTTTGTCGGGGACTTAAT+TGG | - | chr1.4:27360526-27360545 | MS.gene053394:intron | 35.0% |
| AAAACTTGTGGTTGAACCAG+CGG | - | chr1.4:27361846-27361865 | MS.gene053394:intron | 40.0% | |
| AATATTGCTGTCATGGTTGG+TGG | - | chr1.4:27361222-27361241 | MS.gene053394:intron | 40.0% | |
| AATGTGGATTTATCGTGTCG+GGG | + | chr1.4:27360405-27360424 | None:intergenic | 40.0% | |
| ACTAGATCACAATAGGGCTT+TGG | - | chr1.4:27362728-27362747 | MS.gene053394:intron | 40.0% | |
| ATACACTCCCATTGAAACGA+AGG | + | chr1.4:27363501-27363520 | None:intergenic | 40.0% | |
| ATGGACTTTGTCATGTCATC+GGG | - | chr1.4:27361408-27361427 | MS.gene053394:CDS | 40.0% | |
| ATGGTTGACATCAGGATACT+GGG | + | chr1.4:27362829-27362848 | None:intergenic | 40.0% | |
| ATTAAAGCTCCTGCATATGC+AGG | - | chr1.4:27361498-27361517 | MS.gene053394:CDS | 40.0% | |
| ATTGGAAATGTAGCGACTAC+TGG | - | chr1.4:27360717-27360736 | MS.gene053394:CDS | 40.0% | |
| ATTTCCACTGTTCAACAACG+TGG | - | chr1.4:27363287-27363306 | MS.gene053394:CDS | 40.0% | |
| CAATCCAGATGGTACATTGT+AGG | + | chr1.4:27363534-27363553 | None:intergenic | 40.0% | |
| CATTGTGCGAAATTGTGATG+TGG | - | chr1.4:27360667-27360686 | MS.gene053394:intron | 40.0% | |
| CGACTACTGGATTTAATCTG+TGG | - | chr1.4:27360730-27360749 | MS.gene053394:CDS | 40.0% | |
| CTAGATCACAATAGGGCTTT+GGG | - | chr1.4:27362729-27362748 | MS.gene053394:intron | 40.0% | |
| CTCATCAATTGAAAGTCCTG+TGG | + | chr1.4:27364252-27364271 | None:intergenic | 40.0% | |
| CTCTCTGCCATAAATAGTGA+AGG | - | chr1.4:27363073-27363092 | MS.gene053394:CDS | 40.0% | |
| GACAAAGTCCATTGCAACAT+TGG | + | chr1.4:27361400-27361419 | None:intergenic | 40.0% | |
| GACAAATTTAGTAGTACCGC+TGG | + | chr1.4:27361865-27361884 | None:intergenic | 40.0% | |
| GCTGCATTTCCACTTCTTAA+AGG | - | chr1.4:27361020-27361039 | MS.gene053394:intron | 40.0% | |
| GTCAATATTGCTGTCATGGT+TGG | - | chr1.4:27361219-27361238 | MS.gene053394:intron | 40.0% | |
| TAAAAATGCCGGCACTAGTT+TGG | - | chr1.4:27360497-27360516 | MS.gene053394:intron | 40.0% | |
| TAATGGCATGAAGGGAATCT+GGG | - | chr1.4:27360815-27360834 | MS.gene053394:intron | 40.0% | |
| TATCGTGTCGGGGAATAAAT+TGG | + | chr1.4:27360395-27360414 | None:intergenic | 40.0% | |
| TCAAGCATGTGAAGAATCAC+GGG | + | chr1.4:27360948-27360967 | None:intergenic | 40.0% | |
| TCTTGTCCCTATGATTGCTA+GGG | - | chr1.4:27360899-27360918 | MS.gene053394:CDS | 40.0% | |
| TGAGTTCTCAAGGAAGAAGT+TGG | - | chr1.4:27364268-27364287 | MS.gene053394:intron | 40.0% | |
| TGGAGTTAAAATGGAGTTGG+TGG | - | chr1.4:27360995-27361014 | MS.gene053394:CDS | 40.0% | |
| TGTCCCAGGTATAAAAATGC+CGG | - | chr1.4:27360486-27360505 | MS.gene053394:intron | 40.0% | |
| TGTGATATACCATGCATCGT+CGG | + | chr1.4:27362901-27362920 | None:intergenic | 40.0% | |
| TTAAAGCTCCTGCATATGCA+GGG | - | chr1.4:27361499-27361518 | MS.gene053394:CDS | 40.0% | |
| TTATGTAAGGTCAGATTGGC+TGG | + | chr1.4:27361982-27362001 | None:intergenic | 40.0% | |
| ! | AAAAGAAGGTATGGAGAGGA+AGG | - | chr1.4:27361254-27361273 | MS.gene053394:intron | 40.0% |
| ! | ACATTAAGGGTGTGTTTGGA+TGG | - | chr1.4:27362298-27362317 | MS.gene053394:intron | 40.0% |
| ! | ATCAATGCATTGGTGTTTGC+TGG | + | chr1.4:27362654-27362673 | None:intergenic | 40.0% |
| ! | CAAGAAAAGAAGGTATGGAG+AGG | - | chr1.4:27361250-27361269 | MS.gene053394:intron | 40.0% |
| ! | CACCAATGCATTGATCTTGA+AGG | - | chr1.4:27362659-27362678 | MS.gene053394:intron | 40.0% |
| ! | CTCTCCATACCTTCTTTTCT+TGG | + | chr1.4:27361252-27361271 | None:intergenic | 40.0% |
| ! | CTTGTATGTGTGATCGACTT+AGG | - | chr1.4:27361125-27361144 | MS.gene053394:intron | 40.0% |
| ! | CTTTTCTTCAGTCAGCTCTT+CGG | + | chr1.4:27364303-27364322 | None:intergenic | 40.0% |
| ! | GAAGACATTAAGGGTGTGTT+TGG | - | chr1.4:27362294-27362313 | MS.gene053394:intron | 40.0% |
| ! | TAGGGTACCTTCGTTTCAAT+GGG | - | chr1.4:27363491-27363510 | MS.gene053394:intron | 40.0% |
| ! | TCAATGCATTGGTGTTTGCT+GGG | + | chr1.4:27362653-27362672 | None:intergenic | 40.0% |
| ! | TCAATGGGAGTGTATTCTGA+TGG | - | chr1.4:27363506-27363525 | MS.gene053394:intron | 40.0% |
| ! | TTAGGGTACCTTCGTTTCAA+TGG | - | chr1.4:27363490-27363509 | MS.gene053394:intron | 40.0% |
| !! | AACCCTCGTGCTTAATTTGT+CGG | - | chr1.4:27363845-27363864 | MS.gene053394:intron | 40.0% |
| !! | ACGTGGTGCTGCAATTATTA+AGG | - | chr1.4:27363304-27363323 | MS.gene053394:CDS | 40.0% |
| !! | ATTAGAAAAGCACTCCACCA+AGG | + | chr1.4:27363952-27363971 | None:intergenic | 40.0% |
| !! | CATGACAGCAATATTGACTC+CGG | + | chr1.4:27361217-27361236 | None:intergenic | 40.0% |
| AAACCGACAACTTAGGCATG+AGG | + | chr1.4:27363781-27363800 | None:intergenic | 45.0% | |
| AACCGACAACTTAGGCATGA+GGG | + | chr1.4:27363780-27363799 | None:intergenic | 45.0% | |
| AAGAACACGAACTGGGTCTT+TGG | + | chr1.4:27359950-27359969 | None:intergenic | 45.0% | |
| ACACCGACAAATTAAGCACG+AGG | + | chr1.4:27363851-27363870 | None:intergenic | 45.0% | |
| ACAGTTGCATGGTTGACATC+AGG | + | chr1.4:27362837-27362856 | None:intergenic | 45.0% | |
| ACTAAATGGGGTCAGCAACA+TGG | + | chr1.4:27362170-27362189 | None:intergenic | 45.0% | |
| ATCACTCCCCTAGCAATCAT+AGG | + | chr1.4:27360909-27360928 | None:intergenic | 45.0% | |
| CACCGACAAATTAAGCACGA+GGG | + | chr1.4:27363850-27363869 | None:intergenic | 45.0% | |
| CAGTGACAAGAACACGAACT+GGG | + | chr1.4:27359957-27359976 | None:intergenic | 45.0% | |
| CATGGTTGACATCAGGATAC+TGG | + | chr1.4:27362830-27362849 | None:intergenic | 45.0% | |
| CGGAGTCAATATTGCTGTCA+TGG | - | chr1.4:27361215-27361234 | MS.gene053394:intron | 45.0% | |
| CTAATGGCATGAAGGGAATC+TGG | - | chr1.4:27360814-27360833 | MS.gene053394:intron | 45.0% | |
| CTCTTGTCCCTATGATTGCT+AGG | - | chr1.4:27360898-27360917 | MS.gene053394:CDS | 45.0% | |
| CTTGTCCCTATGATTGCTAG+GGG | - | chr1.4:27360900-27360919 | MS.gene053394:CDS | 45.0% | |
| GAAAGGGATTACCTTGCAGT+TGG | + | chr1.4:27361346-27361365 | None:intergenic | 45.0% | |
| GGTTCCTACAATGTACCATC+TGG | - | chr1.4:27363527-27363546 | MS.gene053394:intron | 45.0% | |
| TCACTCCCCTAGCAATCATA+GGG | + | chr1.4:27360908-27360927 | None:intergenic | 45.0% | |
| TCCATGTGATTTCATCGCCA+AGG | - | chr1.4:27362490-27362509 | MS.gene053394:intron | 45.0% | |
| TCCTTGGCGATGAAATCACA+TGG | + | chr1.4:27362494-27362513 | None:intergenic | 45.0% | |
| TGCTACAACCGATGTTGTTG+AGG | - | chr1.4:27361185-27361204 | MS.gene053394:intron | 45.0% | |
| TGTGTTTGGATGGAGGGTTT+AGG | - | chr1.4:27362308-27362327 | MS.gene053394:intron | 45.0% | |
| TTGGATGGAGGGTTTAGGAA+GGG | - | chr1.4:27362313-27362332 | MS.gene053394:intron | 45.0% | |
| TTGTCATGTCATCGGGTCAA+TGG | - | chr1.4:27361415-27361434 | MS.gene053394:CDS | 45.0% | |
| TTGTGACCACATTCGCGATT+GGG | - | chr1.4:27363367-27363386 | MS.gene053394:CDS | 45.0% | |
| TTTCCATTCACCATTGGCAC+AGG | + | chr1.4:27363576-27363595 | None:intergenic | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+AGG | - | chr1.4:27362312-27362331 | MS.gene053394:intron | 45.0% | |
| ! | AACTTGTTTCCGACGATGCA+TGG | - | chr1.4:27362889-27362908 | MS.gene053394:intron | 45.0% |
| ! | ATGCAGGAGCTTTAATGCAC+CGG | + | chr1.4:27361494-27361513 | None:intergenic | 45.0% |
| ! | CAGATCGACTTATTTGTCCC+AGG | - | chr1.4:27360472-27360491 | MS.gene053394:intron | 45.0% |
| ! | CATCGTCGGAAACAAGTTGA+CGG | + | chr1.4:27362887-27362906 | None:intergenic | 45.0% |
| ! | GGTGGATTCCCAAGAAAAGA+AGG | - | chr1.4:27361240-27361259 | MS.gene053394:intron | 45.0% |
| ! | GTCAGATTGGCTGGTTCAAT+TGG | + | chr1.4:27361973-27361992 | None:intergenic | 45.0% |
| ! | GTTCCCTCACGATTTTCTCT+CGG | + | chr1.4:27360553-27360572 | None:intergenic | 45.0% |
| ! | TAAGGGTGTGTTTGGATGGA+GGG | - | chr1.4:27362302-27362321 | MS.gene053394:intron | 45.0% |
| ! | TTAAGGGTGTGTTTGGATGG+AGG | - | chr1.4:27362301-27362320 | MS.gene053394:intron | 45.0% |
| ! | TTCCCTCACGATTTTCTCTC+GGG | + | chr1.4:27360552-27360571 | None:intergenic | 45.0% |
| !! | GGTGATGAAAGAAGTACCTG+CGG | + | chr1.4:27359983-27360002 | None:intergenic | 45.0% |
| !! | GTGCCGGCATTTTTATACCT+GGG | + | chr1.4:27360492-27360511 | None:intergenic | 45.0% |
| !! | TGAAGAATCACGGGTTGATC+TGG | + | chr1.4:27360939-27360958 | None:intergenic | 45.0% |
| !!! | AGTGCCGGCATTTTTATACC+TGG | + | chr1.4:27360493-27360512 | None:intergenic | 45.0% |
| !!! | ATTTTTTTGATTTTAAATAA+TGG | - | chr1.4:27360110-27360129 | MS.gene053394:intron | 5.0% |
| !!! | TTTTTTTGATTTTAAATAAT+GGG | - | chr1.4:27360111-27360130 | MS.gene053394:intron | 5.0% |
| AACTGTTAACACCCCAGCTG+GGG | - | chr1.4:27362851-27362870 | MS.gene053394:intron | 50.0% | |
| AGCACCACGTTGTTGAACAG+TGG | + | chr1.4:27363294-27363313 | None:intergenic | 50.0% | |
| ATGGAGGGTTTAGGAAGGGA+GGG | - | chr1.4:27362317-27362336 | MS.gene053394:intron | 50.0% | |
| ATTGCTAGGGGAGTGATGCT+CGG | - | chr1.4:27360912-27360931 | MS.gene053394:CDS | 50.0% | |
| CAACTGTTAACACCCCAGCT+GGG | - | chr1.4:27362850-27362869 | MS.gene053394:intron | 50.0% | |
| CAAGAACCCAATCGCGAATG+TGG | + | chr1.4:27363376-27363395 | None:intergenic | 50.0% | |
| CACATTCGCGATTGGGTTCT+TGG | - | chr1.4:27363374-27363393 | MS.gene053394:CDS | 50.0% | |
| CACCCTCATGCCTAAGTTGT+CGG | - | chr1.4:27363775-27363794 | MS.gene053394:intron | 50.0% | |
| CCAGTGACAAGAACACGAAC+TGG | + | chr1.4:27359958-27359977 | None:intergenic | 50.0% | |
| CCAGTTCGTGTTCTTGTCAC+TGG | - | chr1.4:27359955-27359974 | MS.gene053394:CDS | 50.0% | |
| CCATTCAATGACTCTGCTGC+AGG | + | chr1.4:27360978-27360997 | None:intergenic | 50.0% | |
| CCTGCAGCAGAGTCATTGAA+TGG | - | chr1.4:27360975-27360994 | MS.gene053394:CDS | 50.0% | |
| CTTGTGACCACATTCGCGAT+TGG | - | chr1.4:27363366-27363385 | MS.gene053394:CDS | 50.0% | |
| GATGTTGTTGAGGCATGCAC+CGG | - | chr1.4:27361195-27361214 | MS.gene053394:intron | 50.0% | |
| GGTGCATGCCTCAACAACAT+CGG | + | chr1.4:27361196-27361215 | None:intergenic | 50.0% | |
| TCACCTGTGCCAATGGTGAA+TGG | - | chr1.4:27363570-27363589 | MS.gene053394:intron | 50.0% | |
| ! | CGGTTTGTTTGCGACTATGC+TGG | - | chr1.4:27362213-27362232 | MS.gene053394:intron | 50.0% |
| ! | CTGGGGTGTTAACAGTTGCA+TGG | + | chr1.4:27362848-27362867 | None:intergenic | 50.0% |
| ! | GTCGGAAACAAGTTGACGGA+CGG | + | chr1.4:27362883-27362902 | None:intergenic | 50.0% |
| ! | TCGGAAACAAGTTGACGGAC+GGG | + | chr1.4:27362882-27362901 | None:intergenic | 50.0% |
| ! | TGCAGGAGCTTTAATGCACC+GGG | + | chr1.4:27361493-27361512 | None:intergenic | 50.0% |
| !!! | GTTTTTTGAGGACCCCTTCC+TGG | + | chr1.4:27361526-27361545 | None:intergenic | 50.0% |
| CACCATTGGCACAGGTGACA+GGG | + | chr1.4:27363568-27363587 | None:intergenic | 55.0% | |
| CATATGCAGGGTCCAGGAAG+GGG | - | chr1.4:27361511-27361530 | MS.gene053394:CDS | 55.0% | |
| GATGGAGGGTTTAGGAAGGG+AGG | - | chr1.4:27362316-27362335 | MS.gene053394:intron | 55.0% | |
| GCAACTGTTAACACCCCAGC+TGG | - | chr1.4:27362849-27362868 | MS.gene053394:intron | 55.0% | |
| GCATATGCAGGGTCCAGGAA+GGG | - | chr1.4:27361510-27361529 | MS.gene053394:CDS | 55.0% | |
| GGCAGCAGCATGCTTCTCAA+GGG | + | chr1.4:27361325-27361344 | None:intergenic | 55.0% | |
| GGCATGAAGGGAATCTGGGT+CGG | - | chr1.4:27360819-27360838 | MS.gene053394:intron | 55.0% | |
| GGCCCGAGAGAAAATCGTGA+GGG | - | chr1.4:27360547-27360566 | MS.gene053394:intron | 55.0% | |
| GTTCTTGGAACTCCCCAGGT+TGG | - | chr1.4:27363389-27363408 | MS.gene053394:CDS | 55.0% | |
| TCACCATTGGCACAGGTGAC+AGG | + | chr1.4:27363569-27363588 | None:intergenic | 55.0% | |
| TGCATATGCAGGGTCCAGGA+AGG | - | chr1.4:27361509-27361528 | MS.gene053394:CDS | 55.0% | |
| TGGAGGGTTTAGGAAGGGAG+GGG | - | chr1.4:27362318-27362337 | MS.gene053394:intron | 55.0% | |
| TGGCAGCAGCATGCTTCTCA+AGG | + | chr1.4:27361326-27361345 | None:intergenic | 55.0% | |
| TGGCCCGAGAGAAAATCGTG+AGG | - | chr1.4:27360546-27360565 | MS.gene053394:intron | 55.0% | |
| TTCCCTGTCACCTGTGCCAA+TGG | - | chr1.4:27363563-27363582 | MS.gene053394:intron | 55.0% | |
| TTCCTGGACCCTGCATATGC+AGG | + | chr1.4:27361510-27361529 | None:intergenic | 55.0% | |
| TTGGGTTCTTGGAACTCCCC+AGG | - | chr1.4:27363385-27363404 | MS.gene053394:CDS | 55.0% | |
| AGGGTTTAGGAAGGGAGGGG+AGG | - | chr1.4:27362321-27362340 | MS.gene053394:intron | 60.0% | |
| CTCCTGCATATGCAGGGTCC+AGG | - | chr1.4:27361505-27361524 | MS.gene053394:CDS | 60.0% | |
| GCATGCTGCTGCCAACTGCA+AGG | - | chr1.4:27361332-27361351 | MS.gene053394:intron | 60.0% | |
| GGGTTTAGGAAGGGAGGGGA+GGG | - | chr1.4:27362322-27362341 | MS.gene053394:intron | 60.0% | |
| !! | GTTCTTGTCACTGGTGCCGC+AGG | - | chr1.4:27359964-27359983 | MS.gene053394:CDS | 60.0% |
| ! | GACGGGCTTCTCCCCAGCTG+GGG | + | chr1.4:27362865-27362884 | None:intergenic | 70.0% |
| ! | GGACGGGCTTCTCCCCAGCT+GGG | + | chr1.4:27362866-27362885 | None:intergenic | 70.0% |
| ! | CGGACGGGCTTCTCCCCAGC+TGG | + | chr1.4:27362867-27362886 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 27359943 | 27364349 | 27359943 | ID=MS.gene053394 |
| chr1.4 | mRNA | 27359943 | 27364349 | 27359943 | ID=MS.gene053394.t1;Parent=MS.gene053394 |
| chr1.4 | exon | 27364307 | 27364349 | 27364307 | ID=MS.gene053394.t1.exon1;Parent=MS.gene053394.t1 |
| chr1.4 | CDS | 27364307 | 27364349 | 27364307 | ID=cds.MS.gene053394.t1;Parent=MS.gene053394.t1 |
| chr1.4 | exon | 27363251 | 27363409 | 27363251 | ID=MS.gene053394.t1.exon2;Parent=MS.gene053394.t1 |
| chr1.4 | CDS | 27363251 | 27363409 | 27363251 | ID=cds.MS.gene053394.t1;Parent=MS.gene053394.t1 |
| chr1.4 | exon | 27362939 | 27363114 | 27362939 | ID=MS.gene053394.t1.exon3;Parent=MS.gene053394.t1 |
| chr1.4 | CDS | 27362939 | 27363114 | 27362939 | ID=cds.MS.gene053394.t1;Parent=MS.gene053394.t1 |
| chr1.4 | exon | 27361382 | 27361659 | 27361382 | ID=MS.gene053394.t1.exon4;Parent=MS.gene053394.t1 |
| chr1.4 | CDS | 27361382 | 27361659 | 27361382 | ID=cds.MS.gene053394.t1;Parent=MS.gene053394.t1 |
| chr1.4 | exon | 27360886 | 27361021 | 27360886 | ID=MS.gene053394.t1.exon5;Parent=MS.gene053394.t1 |
| chr1.4 | CDS | 27360886 | 27361021 | 27360886 | ID=cds.MS.gene053394.t1;Parent=MS.gene053394.t1 |
| chr1.4 | exon | 27360687 | 27360798 | 27360687 | ID=MS.gene053394.t1.exon6;Parent=MS.gene053394.t1 |
| chr1.4 | CDS | 27360687 | 27360798 | 27360687 | ID=cds.MS.gene053394.t1;Parent=MS.gene053394.t1 |
| chr1.4 | exon | 27359943 | 27360037 | 27359943 | ID=MS.gene053394.t1.exon7;Parent=MS.gene053394.t1 |
| chr1.4 | CDS | 27359943 | 27360037 | 27359943 | ID=cds.MS.gene053394.t1;Parent=MS.gene053394.t1 |
| Gene Sequence |
| Protein sequence |
