Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48869.t1 | GAU33476.1 | 61.1 | 303 | 104 | 4 | 1 | 302 | 50 | 339 | 7.70E-95 | 357.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48869.t1 | A0A2Z6MLR9 | 61.1 | 303 | 104 | 4 | 1 | 302 | 50 | 339 | 5.5e-95 | 357.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050355 | MS.gene48869 | 0.809406 | 1.92E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene48869 | 0.805094 | 1.58E-49 | -1.69E-46 |
| MS.gene053460 | MS.gene48869 | 0.89383 | 4.36E-75 | -1.69E-46 |
| MS.gene055818 | MS.gene48869 | 0.804864 | 1.76E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene48869 | 0.802922 | 4.46E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGACGTCCCAAACCTTT+TGG | 0.174160 | 4.3:-71780695 | None:intergenic |
| AGCTCCATGGGTAGTAATTT+TGG | 0.185959 | 4.3:+71779199 | MS.gene48869:CDS |
| AACTGTTTCATTTGCCAAAA+TGG | 0.193914 | 4.3:-71780235 | None:intergenic |
| CATAAGCAAGATTTCATTAA+AGG | 0.220107 | 4.3:+71781053 | MS.gene48869:CDS |
| AATAGATGGTCCATCTAATT+TGG | 0.253635 | 4.3:-71779531 | None:intergenic |
| TTTGATGTTGGCAAAGTCTT+TGG | 0.263575 | 4.3:+71781028 | MS.gene48869:CDS |
| TGTCGTGGAATTCACCATTT+TGG | 0.264921 | 4.3:+71780221 | MS.gene48869:CDS |
| GTTGTTTCAGGCTATGTTTA+TGG | 0.272519 | 4.3:+71780592 | MS.gene48869:intron |
| TTTGTTTCAGGTAATAGATT+TGG | 0.303954 | 4.3:+71780032 | MS.gene48869:intron |
| TAGGAATGATTGTGCGGTTT+GGG | 0.307093 | 4.3:+71780801 | MS.gene48869:intron |
| AATAGTCACCCCAAAAGGTT+TGG | 0.336042 | 4.3:+71780685 | MS.gene48869:CDS |
| TCATCTACACTGGTTCCTTT+TGG | 0.345121 | 4.3:+71780403 | MS.gene48869:CDS |
| CAGCAATCTAAAGTGCAAAA+TGG | 0.351215 | 4.3:+71779024 | MS.gene48869:CDS |
| GTGCGGTTTGGGTAATTAAC+TGG | 0.355704 | 4.3:+71780812 | MS.gene48869:CDS |
| GTTTCTGCCAACAACTTTAA+CGG | 0.369175 | 4.3:+71780110 | MS.gene48869:CDS |
| GTTTATGGAGGAGTTCTTGA+TGG | 0.373775 | 4.3:+71780607 | MS.gene48869:CDS |
| AAAATGGATTCTTTAATGAT+TGG | 0.377084 | 4.3:+71779040 | MS.gene48869:CDS |
| CGTGAAGCACCGACGAACTT+TGG | 0.382229 | 4.3:-71780469 | None:intergenic |
| TTGTCATATGAAACTCTTGA+TGG | 0.382802 | 4.3:-71779305 | None:intergenic |
| AAAACTCCCTCCAAATTAGA+TGG | 0.388717 | 4.3:+71779521 | MS.gene48869:CDS |
| AAATTTACCGTTAAAGTTGT+TGG | 0.410827 | 4.3:-71780117 | None:intergenic |
| TCATTGATATCATAATTTGT+TGG | 0.419889 | 4.3:-71779081 | None:intergenic |
| GGTGTCTTGGTAACTACAAT+AGG | 0.421418 | 4.3:-71779464 | None:intergenic |
| TTTGTTGGCCTTGAAAACTT+AGG | 0.429586 | 4.3:-71779066 | None:intergenic |
| TTAGGAATGATTGTGCGGTT+TGG | 0.432957 | 4.3:+71780800 | MS.gene48869:intron |
| GTTAATACCTTCGGAATAGA+TGG | 0.446080 | 4.3:-71779545 | None:intergenic |
| CAGTGTAGATGATCATATAT+TGG | 0.446763 | 4.3:-71780392 | None:intergenic |
| TTTAAAATAGTCACCCCAAA+AGG | 0.463204 | 4.3:+71780680 | MS.gene48869:CDS |
| CAAAGTTCGTCGGTGCTTCA+CGG | 0.486634 | 4.3:+71780470 | MS.gene48869:CDS |
| TGTGTACCCCAGCGGTGTCT+TGG | 0.488404 | 4.3:-71779477 | None:intergenic |
| TTGATGGATCCATCTTTCCA+TGG | 0.492954 | 4.3:+71780623 | MS.gene48869:CDS |
| ATAGTCACCCCAAAAGGTTT+GGG | 0.495339 | 4.3:+71780686 | MS.gene48869:CDS |
| AAATGCGTCAACCTAAAACT+TGG | 0.506791 | 4.3:+71780088 | MS.gene48869:CDS |
| GACATCAGTAGAAGAAGTGA+AGG | 0.508863 | 4.3:+71779244 | MS.gene48869:CDS |
| GCTAACTTACGATGCAAGAA+AGG | 0.510769 | 4.3:+71780065 | MS.gene48869:CDS |
| AAATCTCTCTTGTCGTTGAA+AGG | 0.515792 | 4.3:-71781008 | None:intergenic |
| TGTAGTTACCAAGACACCGC+TGG | 0.517098 | 4.3:+71779469 | MS.gene48869:CDS |
| GGTTTGGGACGTCAAGGGGA+TGG | 0.517176 | 4.3:+71780701 | MS.gene48869:CDS |
| GAATCAGTGCCATGGAAAGA+TGG | 0.518164 | 4.3:-71780632 | None:intergenic |
| TCACAAAGTCAATAACCAAA+AGG | 0.520836 | 4.3:-71780418 | None:intergenic |
| CCAGGGGTCATTAGCTCCAT+GGG | 0.529690 | 4.3:+71779187 | MS.gene48869:intron |
| ACCAGGGGTCATTAGCTCCA+TGG | 0.532456 | 4.3:+71779186 | MS.gene48869:intron |
| ATGATGCAACGTGGAGAGAA+TGG | 0.542299 | 4.3:+71780835 | MS.gene48869:CDS |
| GTCTCCAAAATTACTACCCA+TGG | 0.543585 | 4.3:-71779203 | None:intergenic |
| GTTTCAGGCTATGTTTATGG+AGG | 0.543768 | 4.3:+71780595 | MS.gene48869:intron |
| CCAAAAGGTTTGGGACGTCA+AGG | 0.551652 | 4.3:+71780695 | MS.gene48869:CDS |
| GTAGTTACCAAGACACCGCT+GGG | 0.555797 | 4.3:+71779470 | MS.gene48869:CDS |
| CAAAAGGTTTGGGACGTCAA+GGG | 0.561039 | 4.3:+71780696 | MS.gene48869:CDS |
| GTTCGTCGGTGCTTCACGGA+AGG | 0.563242 | 4.3:+71780474 | MS.gene48869:CDS |
| AAAAGGTTTGGGACGTCAAG+GGG | 0.574712 | 4.3:+71780697 | MS.gene48869:CDS |
| CATTAAAGGATATGATTCAG+AGG | 0.576591 | 4.3:+71781067 | MS.gene48869:CDS |
| AGATGGTCCATCTAATTTGG+AGG | 0.577756 | 4.3:-71779528 | None:intergenic |
| TTTAGCGATATGTGCTGTCG+TGG | 0.583539 | 4.3:+71780206 | MS.gene48869:intron |
| CGACAAGAGAGATTTGATGT+TGG | 0.587936 | 4.3:+71781016 | MS.gene48869:CDS |
| GATGGTCCATCTAATTTGGA+GGG | 0.594614 | 4.3:-71779527 | None:intergenic |
| CATAGTTTGAATCAGTGCCA+TGG | 0.596462 | 4.3:-71780640 | None:intergenic |
| ATTTATGGGAAATGCTGATG+TGG | 0.609698 | 4.3:+71780270 | MS.gene48869:CDS |
| AAATGCTGATGTGGTTTCAA+AGG | 0.609916 | 4.3:+71780279 | MS.gene48869:CDS |
| CAATATATGATCATCTACAC+TGG | 0.632704 | 4.3:+71780393 | MS.gene48869:CDS |
| AGATGGACCATCTATTCCGA+AGG | 0.659380 | 4.3:+71779538 | MS.gene48869:CDS |
| GGAGGTGTATCATGTGTACA+AGG | 0.664479 | 4.3:-71779284 | None:intergenic |
| AACAAATTATGATATCAATG+AGG | 0.669405 | 4.3:+71779083 | MS.gene48869:CDS |
| TTATGCAAACAGGTGGACGA+AGG | 0.671354 | 4.3:+71780948 | MS.gene48869:intron |
| TCATATGAAACTCTTGATGG+AGG | 0.686579 | 4.3:-71779302 | None:intergenic |
| CGTGGAACTGTGTACCCCAG+CGG | 0.708060 | 4.3:-71779485 | None:intergenic |
| TGACTCGTACCAAAGTTCGT+CGG | 0.721179 | 4.3:+71780460 | MS.gene48869:CDS |
| ATTAACTGGATGATGCAACG+TGG | 0.737445 | 4.3:+71780826 | MS.gene48869:CDS |
| TAGTTACCAAGACACCGCTG+GGG | 0.764803 | 4.3:+71779471 | MS.gene48869:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGATTAAATTTTGTTTT+AGG | + | chr4.3:71780782-71780801 | MS.gene48869:intron | 10.0% |
| !! | TCTAATTAAATAATACATAG+TGG | - | chr4.3:71780738-71780757 | None:intergenic | 15.0% |
| !!! | TATTTTTAATTGTTATAGGA+AGG | + | chr4.3:71779829-71779848 | MS.gene48869:intron | 15.0% |
| !! | AAATTGTTCTCAACAAAAAA+AGG | + | chr4.3:71779428-71779447 | MS.gene48869:CDS | 20.0% |
| !! | AACAAATTATGATATCAATG+AGG | + | chr4.3:71779083-71779102 | MS.gene48869:CDS | 20.0% |
| !! | ACTTATTAAGCTTATTTGTA+TGG | + | chr4.3:71779986-71780005 | MS.gene48869:intron | 20.0% |
| !! | CTTATTAAGCTTATTTGTAT+GGG | + | chr4.3:71779987-71780006 | MS.gene48869:intron | 20.0% |
| !! | GATATCAAGTATCAAAAAAT+TGG | + | chr4.3:71780496-71780515 | MS.gene48869:CDS | 20.0% |
| !! | TTATTAAGCTTATTTGTATG+GGG | + | chr4.3:71779988-71780007 | MS.gene48869:intron | 20.0% |
| !! | TTCTACCAAAAAGAATTTAT+GGG | + | chr4.3:71780256-71780275 | MS.gene48869:CDS | 20.0% |
| !! | TTGTTAATATCTTTATACAG+TGG | + | chr4.3:71779633-71779652 | MS.gene48869:intron | 20.0% |
| !!! | AAAATGGATTCTTTAATGAT+TGG | + | chr4.3:71779040-71779059 | MS.gene48869:CDS | 20.0% |
| !!! | TCATTGATATCATAATTTGT+TGG | - | chr4.3:71779084-71779103 | None:intergenic | 20.0% |
| !!! | TGCAATTTCATTACATTTTA+TGG | + | chr4.3:71780898-71780917 | MS.gene48869:intron | 20.0% |
| !!! | TTTTTGTTGAGAACAATTTT+CGG | - | chr4.3:71779427-71779446 | None:intergenic | 20.0% |
| ! | AAATTTACCGTTAAAGTTGT+TGG | - | chr4.3:71780120-71780139 | None:intergenic | 25.0% |
| ! | AATTTGGCCATTTACATATT+TGG | + | chr4.3:71779710-71779729 | MS.gene48869:intron | 25.0% |
| ! | AGTTTCATATGACAAAAAAG+TGG | + | chr4.3:71779313-71779332 | MS.gene48869:CDS | 25.0% |
| ! | CATAAGCAAGATTTCATTAA+AGG | + | chr4.3:71781053-71781072 | MS.gene48869:CDS | 25.0% |
| ! | GTTCTACCAAAAAGAATTTA+TGG | + | chr4.3:71780255-71780274 | MS.gene48869:CDS | 25.0% |
| ! | TTTAATTCCATTCTTCTCTT+TGG | - | chr4.3:71779677-71779696 | None:intergenic | 25.0% |
| !! | ACTTTTTGAATGTTATTACC+AGG | + | chr4.3:71779169-71779188 | MS.gene48869:intron | 25.0% |
| !! | CATTTCCCATAAATTCTTTT+TGG | - | chr4.3:71780264-71780283 | None:intergenic | 25.0% |
| !! | CTTTTTGAATGTTATTACCA+GGG | + | chr4.3:71779170-71779189 | MS.gene48869:intron | 25.0% |
| !! | TGTCATTATGCTTTTAACAT+TGG | - | chr4.3:71779228-71779247 | None:intergenic | 25.0% |
| !! | TTTGTTTCAGGTAATAGATT+TGG | + | chr4.3:71780032-71780051 | MS.gene48869:intron | 25.0% |
| !! | TTTTTGAATGTTATTACCAG+GGG | + | chr4.3:71779171-71779190 | MS.gene48869:intron | 25.0% |
| !!! | GTTTTTTTTTCTTTTCTACG+TGG | - | chr4.3:71779506-71779525 | None:intergenic | 25.0% |
| AACTGTTTCATTTGCCAAAA+TGG | - | chr4.3:71780238-71780257 | None:intergenic | 30.0% | |
| AACTTGCCAATTTCTTCATT+AGG | - | chr4.3:71779743-71779762 | None:intergenic | 30.0% | |
| AATAGATGGTCCATCTAATT+TGG | - | chr4.3:71779534-71779553 | None:intergenic | 30.0% | |
| CAATATATGATCATCTACAC+TGG | + | chr4.3:71780393-71780412 | MS.gene48869:CDS | 30.0% | |
| CAGTGTAGATGATCATATAT+TGG | - | chr4.3:71780395-71780414 | None:intergenic | 30.0% | |
| CATCGATGCTTCTAATTATT+GGG | + | chr4.3:71779856-71779875 | MS.gene48869:intron | 30.0% | |
| CATTAAAGGATATGATTCAG+AGG | + | chr4.3:71781067-71781086 | MS.gene48869:CDS | 30.0% | |
| TAGTGGTATGTTAATACCTT+CGG | - | chr4.3:71779557-71779576 | None:intergenic | 30.0% | |
| TCACAAAGTCAATAACCAAA+AGG | - | chr4.3:71780421-71780440 | None:intergenic | 30.0% | |
| TCATCGATGCTTCTAATTAT+TGG | + | chr4.3:71779855-71779874 | MS.gene48869:intron | 30.0% | |
| TGGACATCCAAATATGTAAA+TGG | - | chr4.3:71779720-71779739 | None:intergenic | 30.0% | |
| TTCATATGACAAAAAAGTGG+AGG | + | chr4.3:71779316-71779335 | MS.gene48869:CDS | 30.0% | |
| TTGTCATATGAAACTCTTGA+TGG | - | chr4.3:71779308-71779327 | None:intergenic | 30.0% | |
| TTGTTCTCAACAAAAAAAGG+AGG | + | chr4.3:71779431-71779450 | MS.gene48869:CDS | 30.0% | |
| TTTAGCCAAATTATGCAAAC+AGG | + | chr4.3:71780938-71780957 | MS.gene48869:intron | 30.0% | |
| ! | AAACGAAGAAGAGTGTAATT+TGG | + | chr4.3:71779694-71779713 | MS.gene48869:intron | 30.0% |
| ! | ATTGGAATCCTAAGTTTTCA+AGG | + | chr4.3:71779058-71779077 | MS.gene48869:CDS | 30.0% |
| ! | TAAGAGATCAACTTTGTTTC+AGG | + | chr4.3:71780020-71780039 | MS.gene48869:intron | 30.0% |
| ! | TTTAAAATAGTCACCCCAAA+AGG | + | chr4.3:71780680-71780699 | MS.gene48869:CDS | 30.0% |
| !! | CAAATTTCAAGTGTTGTTTC+AGG | + | chr4.3:71780580-71780599 | MS.gene48869:intron | 30.0% |
| !!! | TTGTTTTAGGAATGATTGTG+CGG | + | chr4.3:71780795-71780814 | MS.gene48869:intron | 30.0% |
| AAAACTCCCTCCAAATTAGA+TGG | + | chr4.3:71779521-71779540 | MS.gene48869:CDS | 35.0% | |
| AAACCCAACAAATTCGTTAC+GGG | + | chr4.3:71779914-71779933 | MS.gene48869:intron | 35.0% | |
| AAATCTCTCTTGTCGTTGAA+AGG | - | chr4.3:71781011-71781030 | None:intergenic | 35.0% | |
| AAATGCGTCAACCTAAAACT+TGG | + | chr4.3:71780088-71780107 | MS.gene48869:CDS | 35.0% | |
| AAATGCTGATGTGGTTTCAA+AGG | + | chr4.3:71780279-71780298 | MS.gene48869:CDS | 35.0% | |
| AGCACATATCGCTAAATAGA+TGG | - | chr4.3:71780202-71780221 | None:intergenic | 35.0% | |
| ATTTATGGGAAATGCTGATG+TGG | + | chr4.3:71780270-71780289 | MS.gene48869:CDS | 35.0% | |
| CATACCACTATTGATGTCTT+CGG | + | chr4.3:71779567-71779586 | MS.gene48869:intron | 35.0% | |
| GAAACCCAACAAATTCGTTA+CGG | + | chr4.3:71779913-71779932 | MS.gene48869:intron | 35.0% | |
| GTTAATACCTTCGGAATAGA+TGG | - | chr4.3:71779548-71779567 | None:intergenic | 35.0% | |
| GTTTCAACCAAAGAGAAGAA+TGG | + | chr4.3:71779667-71779686 | MS.gene48869:intron | 35.0% | |
| GTTTCTGCCAACAACTTTAA+CGG | + | chr4.3:71780110-71780129 | MS.gene48869:CDS | 35.0% | |
| TAAACATGTATGAGCGCATA+GGG | - | chr4.3:71780175-71780194 | None:intergenic | 35.0% | |
| TCATATGAAACTCTTGATGG+AGG | - | chr4.3:71779305-71779324 | None:intergenic | 35.0% | |
| TGTCCACCTAATGAAGAAAT+TGG | + | chr4.3:71779734-71779753 | MS.gene48869:intron | 35.0% | |
| TTAAACATGTATGAGCGCAT+AGG | - | chr4.3:71780176-71780195 | None:intergenic | 35.0% | |
| TTGCCAATTTCTTCATTAGG+TGG | - | chr4.3:71779740-71779759 | None:intergenic | 35.0% | |
| TTTGATGTTGGCAAAGTCTT+TGG | + | chr4.3:71781028-71781047 | MS.gene48869:CDS | 35.0% | |
| ! | AAAAAGTGATGACGATTGCA+AGG | + | chr4.3:71779379-71779398 | MS.gene48869:CDS | 35.0% |
| ! | AATTTTCGGACACTTTGCTT+TGG | - | chr4.3:71779413-71779432 | None:intergenic | 35.0% |
| ! | CAGCAATCTAAAGTGCAAAA+TGG | + | chr4.3:71779024-71779043 | MS.gene48869:CDS | 35.0% |
| ! | GTTGTTTCAGGCTATGTTTA+TGG | + | chr4.3:71780592-71780611 | MS.gene48869:intron | 35.0% |
| !! | TTTGTTGGCCTTGAAAACTT+AGG | - | chr4.3:71779069-71779088 | None:intergenic | 35.0% |
| AAACATGTATGAGCGCATAG+GGG | - | chr4.3:71780174-71780193 | None:intergenic | 40.0% | |
| AATAGTCACCCCAAAAGGTT+TGG | + | chr4.3:71780685-71780704 | MS.gene48869:CDS | 40.0% | |
| ACTACCGAAGACATCAATAG+TGG | - | chr4.3:71779574-71779593 | None:intergenic | 40.0% | |
| AGATGGTCCATCTAATTTGG+AGG | - | chr4.3:71779531-71779550 | None:intergenic | 40.0% | |
| AGCCAAATTATGCAAACAGG+TGG | + | chr4.3:71780941-71780960 | MS.gene48869:intron | 40.0% | |
| ATAGTCACCCCAAAAGGTTT+GGG | + | chr4.3:71780686-71780705 | MS.gene48869:CDS | 40.0% | |
| ATCTCCCGTAACGAATTTGT+TGG | - | chr4.3:71779921-71779940 | None:intergenic | 40.0% | |
| ATTAACTGGATGATGCAACG+TGG | + | chr4.3:71780826-71780845 | MS.gene48869:CDS | 40.0% | |
| CATAGTTTGAATCAGTGCCA+TGG | - | chr4.3:71780643-71780662 | None:intergenic | 40.0% | |
| CGACAAGAGAGATTTGATGT+TGG | + | chr4.3:71781016-71781035 | MS.gene48869:CDS | 40.0% | |
| GACATCAGTAGAAGAAGTGA+AGG | + | chr4.3:71779244-71779263 | MS.gene48869:CDS | 40.0% | |
| GATGGTCCATCTAATTTGGA+GGG | - | chr4.3:71779530-71779549 | None:intergenic | 40.0% | |
| GCTAACTTACGATGCAAGAA+AGG | + | chr4.3:71780065-71780084 | MS.gene48869:CDS | 40.0% | |
| GTCCACCTGTTTGCATAATT+TGG | - | chr4.3:71780946-71780965 | None:intergenic | 40.0% | |
| GTCTCCAAAATTACTACCCA+TGG | - | chr4.3:71779206-71779225 | None:intergenic | 40.0% | |
| GTTTATGGAGGAGTTCTTGA+TGG | + | chr4.3:71780607-71780626 | MS.gene48869:CDS | 40.0% | |
| GTTTCAGGCTATGTTTATGG+AGG | + | chr4.3:71780595-71780614 | MS.gene48869:intron | 40.0% | |
| TAGGAATGATTGTGCGGTTT+GGG | + | chr4.3:71780801-71780820 | MS.gene48869:intron | 40.0% | |
| TTAGGAATGATTGTGCGGTT+TGG | + | chr4.3:71780800-71780819 | MS.gene48869:intron | 40.0% | |
| ! | AGCTCCATGGGTAGTAATTT+TGG | + | chr4.3:71779199-71779218 | MS.gene48869:CDS | 40.0% |
| ! | GGTGTCTTGGTAACTACAAT+AGG | - | chr4.3:71779467-71779486 | None:intergenic | 40.0% |
| ! | GTTGGCAGAAACCAAGTTTT+AGG | - | chr4.3:71780102-71780121 | None:intergenic | 40.0% |
| ! | TCTCCCGTAACGAATTTGTT+GGG | - | chr4.3:71779920-71779939 | None:intergenic | 40.0% |
| ! | TGTCGTGGAATTCACCATTT+TGG | + | chr4.3:71780221-71780240 | MS.gene48869:CDS | 40.0% |
| ! | TTGATGGATCCATCTTTCCA+TGG | + | chr4.3:71780623-71780642 | MS.gene48869:CDS | 40.0% |
| !!! | TCATCTACACTGGTTCCTTT+TGG | + | chr4.3:71780403-71780422 | MS.gene48869:CDS | 40.0% |
| AGATGGACCATCTATTCCGA+AGG | + | chr4.3:71779538-71779557 | MS.gene48869:CDS | 45.0% | |
| ATGATGCAACGTGGAGAGAA+TGG | + | chr4.3:71780835-71780854 | MS.gene48869:CDS | 45.0% | |
| ATTGGGCGCATCATGTAACA+AGG | + | chr4.3:71779873-71779892 | MS.gene48869:intron | 45.0% | |
| GAATCAGTGCCATGGAAAGA+TGG | - | chr4.3:71780635-71780654 | None:intergenic | 45.0% | |
| TGACTCGTACCAAAGTTCGT+CGG | + | chr4.3:71780460-71780479 | MS.gene48869:CDS | 45.0% | |
| TTATGCAAACAGGTGGACGA+AGG | + | chr4.3:71780948-71780967 | MS.gene48869:intron | 45.0% | |
| TTTAGCGATATGTGCTGTCG+TGG | + | chr4.3:71780206-71780225 | MS.gene48869:intron | 45.0% | |
| ! | AAAAGGTTTGGGACGTCAAG+GGG | + | chr4.3:71780697-71780716 | MS.gene48869:CDS | 45.0% |
| ! | CAAAAGGTTTGGGACGTCAA+GGG | + | chr4.3:71780696-71780715 | MS.gene48869:CDS | 45.0% |
| ! | CTTGACGTCCCAAACCTTTT+GGG | - | chr4.3:71780697-71780716 | None:intergenic | 45.0% |
| ! | GGAGGTGTATCATGTGTACA+AGG | - | chr4.3:71779287-71779306 | None:intergenic | 45.0% |
| ! | GTGCGGTTTGGGTAATTAAC+TGG | + | chr4.3:71780812-71780831 | MS.gene48869:CDS | 45.0% |
| ! | TTGACGTCCCAAACCTTTTG+GGG | - | chr4.3:71780696-71780715 | None:intergenic | 45.0% |
| !!! | TTAATATTTTTAATTGTTAT+AGG | + | chr4.3:71779825-71779844 | MS.gene48869:intron | 5.0% |
| GTAGTTACCAAGACACCGCT+GGG | + | chr4.3:71779470-71779489 | MS.gene48869:CDS | 50.0% | |
| TAGTTACCAAGACACCGCTG+GGG | + | chr4.3:71779471-71779490 | MS.gene48869:CDS | 50.0% | |
| TGTAGTTACCAAGACACCGC+TGG | + | chr4.3:71779469-71779488 | MS.gene48869:CDS | 50.0% | |
| ! | CAAAGTTCGTCGGTGCTTCA+CGG | + | chr4.3:71780470-71780489 | MS.gene48869:CDS | 50.0% |
| ! | CCAAAAGGTTTGGGACGTCA+AGG | + | chr4.3:71780695-71780714 | MS.gene48869:CDS | 50.0% |
| ! | CCTTGACGTCCCAAACCTTT+TGG | - | chr4.3:71780698-71780717 | None:intergenic | 50.0% |
| ACCAGGGGTCATTAGCTCCA+TGG | + | chr4.3:71779186-71779205 | MS.gene48869:intron | 55.0% | |
| CCAGGGGTCATTAGCTCCAT+GGG | + | chr4.3:71779187-71779206 | MS.gene48869:intron | 55.0% | |
| !! | CGTGAAGCACCGACGAACTT+TGG | - | chr4.3:71780472-71780491 | None:intergenic | 55.0% |
| CCCATGGAGCTAATGACCCC+TGG | - | chr4.3:71779190-71779209 | None:intergenic | 60.0% | |
| CGTGGAACTGTGTACCCCAG+CGG | - | chr4.3:71779488-71779507 | None:intergenic | 60.0% | |
| TGTGTACCCCAGCGGTGTCT+TGG | - | chr4.3:71779480-71779499 | None:intergenic | 60.0% | |
| ! | GGTTTGGGACGTCAAGGGGA+TGG | + | chr4.3:71780701-71780720 | MS.gene48869:CDS | 60.0% |
| ! | GTTCGTCGGTGCTTCACGGA+AGG | + | chr4.3:71780474-71780493 | MS.gene48869:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 71779008 | 71781097 | 71779008 | ID=MS.gene48869 |
| chr4.3 | mRNA | 71779008 | 71781097 | 71779008 | ID=MS.gene48869.t1;Parent=MS.gene48869 |
| chr4.3 | exon | 71779008 | 71779104 | 71779008 | ID=MS.gene48869.t1.exon1;Parent=MS.gene48869.t1 |
| chr4.3 | CDS | 71779008 | 71779104 | 71779008 | ID=cds.MS.gene48869.t1;Parent=MS.gene48869.t1 |
| chr4.3 | exon | 71779191 | 71779559 | 71779191 | ID=MS.gene48869.t1.exon2;Parent=MS.gene48869.t1 |
| chr4.3 | CDS | 71779191 | 71779559 | 71779191 | ID=cds.MS.gene48869.t1;Parent=MS.gene48869.t1 |
| chr4.3 | exon | 71780042 | 71780131 | 71780042 | ID=MS.gene48869.t1.exon3;Parent=MS.gene48869.t1 |
| chr4.3 | CDS | 71780042 | 71780131 | 71780042 | ID=cds.MS.gene48869.t1;Parent=MS.gene48869.t1 |
| chr4.3 | exon | 71780211 | 71780300 | 71780211 | ID=MS.gene48869.t1.exon4;Parent=MS.gene48869.t1 |
| chr4.3 | CDS | 71780211 | 71780300 | 71780211 | ID=cds.MS.gene48869.t1;Parent=MS.gene48869.t1 |
| chr4.3 | exon | 71780383 | 71780517 | 71780383 | ID=MS.gene48869.t1.exon5;Parent=MS.gene48869.t1 |
| chr4.3 | CDS | 71780383 | 71780517 | 71780383 | ID=cds.MS.gene48869.t1;Parent=MS.gene48869.t1 |
| chr4.3 | exon | 71780602 | 71780726 | 71780602 | ID=MS.gene48869.t1.exon6;Parent=MS.gene48869.t1 |
| chr4.3 | CDS | 71780602 | 71780726 | 71780602 | ID=cds.MS.gene48869.t1;Parent=MS.gene48869.t1 |
| chr4.3 | exon | 71780804 | 71780870 | 71780804 | ID=MS.gene48869.t1.exon7;Parent=MS.gene48869.t1 |
| chr4.3 | CDS | 71780804 | 71780870 | 71780804 | ID=cds.MS.gene48869.t1;Parent=MS.gene48869.t1 |
| chr4.3 | exon | 71780960 | 71781097 | 71780960 | ID=MS.gene48869.t1.exon8;Parent=MS.gene48869.t1 |
| chr4.3 | CDS | 71780960 | 71781097 | 71780960 | ID=cds.MS.gene48869.t1;Parent=MS.gene48869.t1 |
| Gene Sequence |
| Protein sequence |
