Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053672.t1 | PNY15262.1 | 79.3 | 256 | 3 | 1 | 8 | 213 | 159 | 414 | 2.00E-95 | 358.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053672.t1 | Q9FEP7 | 67.2 | 256 | 34 | 1 | 8 | 213 | 354 | 609 | 1.5e-83 | 310.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053672.t1 | A0A2K3PIZ8 | 79.3 | 256 | 3 | 1 | 8 | 213 | 159 | 414 | 1.4e-95 | 358.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053672 | MS.gene062784 | 0.84073 | 7.29E-58 | -1.69E-46 |
| MS.gene053672 | MS.gene062785 | 0.838798 | 2.32E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053672.t1 | MTR_5g061880 | 78.906 | 256 | 4 | 1 | 8 | 213 | 353 | 608 | 6.27e-134 | 390 |
| MS.gene053672.t1 | MTR_3g073780 | 71.765 | 255 | 23 | 1 | 8 | 213 | 358 | 612 | 4.58e-112 | 334 |
| MS.gene053672.t1 | MTR_3g073780 | 89.560 | 182 | 19 | 0 | 8 | 189 | 358 | 539 | 3.04e-106 | 317 |
| MS.gene053672.t1 | MTR_3g073780 | 89.560 | 182 | 19 | 0 | 8 | 189 | 358 | 539 | 5.85e-106 | 317 |
| MS.gene053672.t1 | MTR_2g008470 | 62.109 | 256 | 47 | 1 | 8 | 213 | 357 | 612 | 5.10e-105 | 316 |
| MS.gene053672.t1 | MTR_2g008470 | 62.109 | 256 | 47 | 1 | 8 | 213 | 376 | 631 | 9.29e-105 | 316 |
| MS.gene053672.t1 | MTR_2g102243 | 51.172 | 256 | 75 | 1 | 8 | 213 | 345 | 600 | 1.03e-81 | 256 |
| MS.gene053672.t1 | MTR_2g102243 | 64.088 | 181 | 65 | 0 | 8 | 188 | 345 | 525 | 2.24e-80 | 251 |
| MS.gene053672.t1 | MTR_4g084640 | 56.808 | 213 | 81 | 2 | 8 | 211 | 344 | 554 | 1.41e-79 | 250 |
| MS.gene053672.t1 | MTR_4g084620 | 50.000 | 254 | 79 | 1 | 8 | 213 | 340 | 593 | 4.88e-79 | 249 |
| MS.gene053672.t1 | MTR_4g011970 | 49.219 | 256 | 80 | 1 | 8 | 213 | 352 | 607 | 9.22e-79 | 248 |
| MS.gene053672.t1 | MTR_5g061860 | 60.638 | 188 | 74 | 0 | 8 | 195 | 352 | 539 | 1.82e-77 | 243 |
| MS.gene053672.t1 | MTR_5g061860 | 48.828 | 256 | 81 | 1 | 8 | 213 | 352 | 607 | 4.11e-77 | 244 |
| MS.gene053672.t1 | MTR_3g087740 | 59.890 | 182 | 73 | 0 | 8 | 189 | 354 | 535 | 1.77e-75 | 239 |
| MS.gene053672.t1 | MTR_3g073730 | 59.574 | 188 | 76 | 0 | 8 | 195 | 356 | 543 | 3.53e-74 | 236 |
| MS.gene053672.t1 | MTR_1g071530 | 49.609 | 256 | 79 | 1 | 8 | 213 | 343 | 598 | 4.59e-72 | 231 |
| MS.gene053672.t1 | MTR_7g095430 | 60.440 | 182 | 72 | 0 | 8 | 189 | 340 | 521 | 3.06e-71 | 227 |
| MS.gene053672.t1 | MTR_7g095430 | 47.656 | 256 | 84 | 1 | 8 | 213 | 340 | 595 | 9.98e-71 | 227 |
| MS.gene053672.t1 | MTR_3g087730 | 49.451 | 182 | 92 | 0 | 8 | 189 | 359 | 540 | 5.19e-62 | 204 |
| MS.gene053672.t1 | MTR_6g086170 | 47.253 | 182 | 96 | 0 | 8 | 189 | 333 | 514 | 6.53e-59 | 196 |
| MS.gene053672.t1 | MTR_7g022870 | 44.318 | 176 | 98 | 0 | 8 | 183 | 341 | 516 | 5.47e-49 | 168 |
| MS.gene053672.t1 | MTR_7g022870 | 44.318 | 176 | 98 | 0 | 8 | 183 | 341 | 516 | 1.18e-48 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053672.t1 | AT4G08620 | 62.109 | 256 | 47 | 1 | 8 | 213 | 346 | 601 | 3.55e-99 | 301 |
| MS.gene053672.t1 | AT1G22150 | 67.188 | 256 | 34 | 1 | 8 | 213 | 354 | 609 | 2.58e-98 | 299 |
| MS.gene053672.t1 | AT1G22150 | 67.188 | 256 | 34 | 1 | 8 | 213 | 354 | 609 | 2.58e-98 | 299 |
| MS.gene053672.t1 | AT1G22150 | 67.188 | 256 | 34 | 1 | 8 | 213 | 354 | 609 | 2.58e-98 | 299 |
| MS.gene053672.t1 | AT1G78000 | 66.406 | 256 | 36 | 1 | 8 | 213 | 351 | 606 | 4.23e-98 | 297 |
| MS.gene053672.t1 | AT1G78000 | 66.406 | 256 | 36 | 1 | 8 | 213 | 351 | 606 | 1.46e-97 | 297 |
| MS.gene053672.t1 | AT1G78000 | 66.406 | 256 | 36 | 1 | 8 | 213 | 351 | 606 | 1.46e-97 | 297 |
| MS.gene053672.t1 | AT1G78000 | 66.406 | 256 | 36 | 1 | 8 | 213 | 351 | 606 | 1.46e-97 | 297 |
| MS.gene053672.t1 | AT1G78000 | 82.162 | 185 | 33 | 0 | 8 | 192 | 216 | 400 | 1.43e-92 | 278 |
| MS.gene053672.t1 | AT1G22150 | 83.243 | 185 | 31 | 0 | 8 | 192 | 354 | 538 | 3.01e-91 | 279 |
| MS.gene053672.t1 | AT1G78000 | 82.162 | 185 | 33 | 0 | 8 | 192 | 351 | 535 | 2.05e-90 | 277 |
| MS.gene053672.t1 | AT3G51895 | 59.341 | 182 | 74 | 0 | 8 | 189 | 342 | 523 | 1.47e-78 | 248 |
| MS.gene053672.t1 | AT3G51895 | 59.341 | 182 | 74 | 0 | 8 | 189 | 387 | 568 | 3.50e-78 | 248 |
| MS.gene053672.t1 | AT1G23090 | 62.431 | 181 | 68 | 0 | 8 | 188 | 194 | 374 | 4.38e-78 | 243 |
| MS.gene053672.t1 | AT1G23090 | 62.431 | 181 | 68 | 0 | 8 | 188 | 194 | 374 | 4.38e-78 | 243 |
| MS.gene053672.t1 | AT1G23090 | 62.431 | 181 | 68 | 0 | 8 | 188 | 194 | 374 | 4.38e-78 | 243 |
| MS.gene053672.t1 | AT3G15990 | 49.219 | 256 | 80 | 1 | 8 | 213 | 349 | 604 | 1.30e-77 | 245 |
| MS.gene053672.t1 | AT1G23090 | 62.431 | 181 | 68 | 0 | 8 | 188 | 326 | 506 | 1.33e-76 | 242 |
| MS.gene053672.t1 | AT5G10180 | 62.088 | 182 | 69 | 0 | 8 | 189 | 376 | 557 | 7.45e-73 | 233 |
| MS.gene053672.t1 | AT1G77990 | 55.851 | 188 | 83 | 0 | 8 | 195 | 368 | 555 | 1.06e-70 | 228 |
| MS.gene053672.t1 | AT4G02700 | 45.312 | 256 | 90 | 2 | 8 | 213 | 333 | 588 | 2.40e-68 | 221 |
| MS.gene053672.t1 | AT1G78000 | 79.310 | 145 | 30 | 0 | 8 | 152 | 351 | 495 | 2.45e-61 | 199 |
| MS.gene053672.t1 | AT5G19600 | 51.397 | 179 | 87 | 0 | 8 | 186 | 337 | 515 | 3.57e-61 | 201 |
| MS.gene053672.t1 | AT3G12520 | 43.182 | 176 | 100 | 0 | 8 | 183 | 334 | 509 | 3.61e-48 | 165 |
| MS.gene053672.t1 | AT3G12520 | 43.182 | 176 | 100 | 0 | 8 | 183 | 318 | 493 | 9.26e-48 | 166 |
| MS.gene053672.t1 | AT3G12520 | 43.182 | 176 | 100 | 0 | 8 | 183 | 334 | 509 | 1.12e-47 | 166 |
| MS.gene053672.t1 | AT5G13550 | 43.646 | 181 | 92 | 2 | 8 | 183 | 347 | 522 | 1.20e-47 | 166 |
Find 46 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGGAACCCTTGTGGCTTC+TGG | 0.244498 | 5.2:-52031099 | None:intergenic |
| AAGGCCCCGAACTGCTATTC+TGG | 0.303809 | 5.2:+52031032 | MS.gene053672:CDS |
| ATACACTCCAAATGCAATTC+TGG | 0.309038 | 5.2:+52030723 | MS.gene053672:CDS |
| GACTTCTAAATAACTCTTCC+AGG | 0.340225 | 5.2:-52032077 | None:intergenic |
| TTGTGGCTTCTGGATATTGC+TGG | 0.340906 | 5.2:-52031089 | None:intergenic |
| ATGAAAGACTATCAACTTGA+TGG | 0.352997 | 5.2:+52030435 | MS.gene053672:CDS |
| CTTCCCCAGAATAGCAGTTC+GGG | 0.364574 | 5.2:-52031037 | None:intergenic |
| CCAGAAGCCACAAGGGTTCC+CGG | 0.366444 | 5.2:+52031099 | MS.gene053672:CDS |
| TCTTCAAAAGAGAGAAGTTC+AGG | 0.372341 | 5.2:+52032098 | MS.gene053672:CDS |
| GGGGCCTTGTGACTTGTAAT+AGG | 0.389141 | 5.2:-52031017 | None:intergenic |
| ATTGAGGCCAGAATTGCATT+TGG | 0.401265 | 5.2:-52030730 | None:intergenic |
| TTTCTATAAACAGTTGTCCT+AGG | 0.415898 | 5.2:-52031063 | None:intergenic |
| TCGGTCAGCAATAAATTTCA+TGG | 0.428079 | 5.2:+52030618 | MS.gene053672:CDS |
| AACAAAGAAATGATGGCATT+AGG | 0.432536 | 5.2:+52030459 | MS.gene053672:CDS |
| TATCAGGAAGCCATAGCAAT+TGG | 0.433820 | 5.2:+52030396 | MS.gene053672:CDS |
| AGGCCCCGAACTGCTATTCT+GGG | 0.438860 | 5.2:+52031033 | MS.gene053672:CDS |
| TTAGGAGCTATGAATGTTGT+TGG | 0.466708 | 5.2:+52030477 | MS.gene053672:CDS |
| AAATGTTCTTCCAATTGCTA+TGG | 0.475056 | 5.2:-52030406 | None:intergenic |
| ACTTCCTGCTATGTAGCAAC+TGG | 0.480021 | 5.2:+52030507 | MS.gene053672:CDS |
| TCTTCCCCAGAATAGCAGTT+CGG | 0.480188 | 5.2:-52031038 | None:intergenic |
| TATTATCAGGTTCCTTCTCT+CGG | 0.490063 | 5.2:+52030599 | MS.gene053672:intron |
| TGATGGAAACAAAGAAATGA+TGG | 0.492078 | 5.2:+52030452 | MS.gene053672:CDS |
| TACCAGTGGCATCCATGCCC+TGG | 0.511166 | 5.2:+52032059 | MS.gene053672:CDS |
| CTATTCTGGGGAAGATCCCT+AGG | 0.514412 | 5.2:+52031046 | MS.gene053672:CDS |
| CATCAACCTTGTTGACTACA+AGG | 0.515925 | 5.2:+52030768 | MS.gene053672:CDS |
| TAAATAACTCTTCCAGGGCA+TGG | 0.517398 | 5.2:-52032071 | None:intergenic |
| ATTTGACTTTGTTGCTTGCA+TGG | 0.523266 | 5.2:+52030819 | MS.gene053672:CDS |
| TTTGACTTTGTTGCTTGCAT+GGG | 0.525969 | 5.2:+52030820 | MS.gene053672:CDS |
| TTCTATAAACAGTTGTCCTA+GGG | 0.528944 | 5.2:-52031062 | None:intergenic |
| CTTACCAGTTGCTACATAGC+AGG | 0.540351 | 5.2:-52030511 | None:intergenic |
| TCAGCAATAAATTTCATGGC+TGG | 0.552240 | 5.2:+52030622 | MS.gene053672:CDS |
| AGCAATATCCAGAAGCCACA+AGG | 0.552472 | 5.2:+52031091 | MS.gene053672:CDS |
| ATTTATTGCTGACCGAGAGA+AGG | 0.570417 | 5.2:-52030611 | None:intergenic |
| TTCCAGGGCATGGATGCCAC+TGG | 0.573861 | 5.2:-52032061 | None:intergenic |
| TTGTAATAGGATCTTTGCAA+AGG | 0.587197 | 5.2:-52031004 | None:intergenic |
| CAATACACCGGGAACCCTTG+TGG | 0.612119 | 5.2:-52031106 | None:intergenic |
| CATGGCTGGCTGCGAAACTG+CGG | 0.618353 | 5.2:+52030636 | MS.gene053672:CDS |
| ACTTCTAAATAACTCTTCCA+GGG | 0.621237 | 5.2:-52032076 | None:intergenic |
| TTGCTGCCTTGTAGTCAACA+AGG | 0.634329 | 5.2:-52030774 | None:intergenic |
| GTTACTGATATTGATACCAG+TGG | 0.647299 | 5.2:+52032045 | MS.gene053672:CDS |
| GACAGCACAAATGATGATTG+AGG | 0.651653 | 5.2:-52030746 | None:intergenic |
| GCAATATCCAGAAGCCACAA+GGG | 0.661125 | 5.2:+52031092 | MS.gene053672:CDS |
| TTCCCCAGAATAGCAGTTCG+GGG | 0.661856 | 5.2:-52031036 | None:intergenic |
| TTTGGAGTGTATTTGAAAAG+CGG | 0.675812 | 5.2:-52030712 | None:intergenic |
| GGCCCCGAACTGCTATTCTG+GGG | 0.677105 | 5.2:+52031034 | MS.gene053672:CDS |
| AGATCCTATTACAAGTCACA+AGG | 0.684935 | 5.2:+52031013 | MS.gene053672:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATTACAAACAGAA+AGG | - | chr5.2:52031202-52031221 | None:intergenic | 15.0% |
| !! | AAAAAAATTACAAACAGAAA+GGG | - | chr5.2:52031201-52031220 | None:intergenic | 15.0% |
| !!! | AAATTTAAGATAGACTATAT+TGG | - | chr5.2:52031468-52031487 | None:intergenic | 15.0% |
| !! | AATTAATACAATCTGTATAG+TGG | + | chr5.2:52031237-52031256 | MS.gene053672:intron | 20.0% |
| !! | ATATTAATAACTATGCTGTA+AGG | + | chr5.2:52031290-52031309 | MS.gene053672:intron | 20.0% |
| !! | TATAAGATATTTCGGATTAT+TGG | - | chr5.2:52031377-52031396 | None:intergenic | 20.0% |
| !! | TTACCTTTCTTTAACATAAT+TGG | - | chr5.2:52031169-52031188 | None:intergenic | 20.0% |
| !! | TTGAATAGTGATTAATAGTT+CGG | + | chr5.2:52031590-52031609 | MS.gene053672:intron | 20.0% |
| !!! | ACACTGATTATAAGATATTT+CGG | - | chr5.2:52031385-52031404 | None:intergenic | 20.0% |
| !!! | GATAATTTTTCCTTTCTTTT+CGG | + | chr5.2:52031808-52031827 | MS.gene053672:intron | 20.0% |
| ! | AACTCTTATAATCAATACAC+CGG | - | chr5.2:52031121-52031140 | None:intergenic | 25.0% |
| ! | ACAAATTAAACACACATTTG+AGG | - | chr5.2:52032018-52032037 | None:intergenic | 25.0% |
| ! | ACTCCAATTATGTTAAAGAA+AGG | + | chr5.2:52031163-52031182 | MS.gene053672:intron | 25.0% |
| ! | CATCTCAACTATCAAAAAAT+TGG | - | chr5.2:52031929-52031948 | None:intergenic | 25.0% |
| ! | TAATAAGATAACTGAGTCTT+TGG | - | chr5.2:52030905-52030924 | None:intergenic | 25.0% |
| ! | TGAATAGTGATTAATAGTTC+GGG | + | chr5.2:52031591-52031610 | MS.gene053672:intron | 25.0% |
| ! | TTAATTATTGCCGAAAAGAA+AGG | - | chr5.2:52031821-52031840 | None:intergenic | 25.0% |
| ! | TTATTACCATCAGATTTCAT+TGG | - | chr5.2:52031680-52031699 | None:intergenic | 25.0% |
| !! | ATTAATTTTGTTGCATGTTG+TGG | + | chr5.2:52030968-52030987 | MS.gene053672:intron | 25.0% |
| !!! | ATTTCAGTTTTAGTTCTGAT+TGG | + | chr5.2:52030937-52030956 | MS.gene053672:intron | 25.0% |
| AAACATTAACCTAACGAGTT+TGG | + | chr5.2:52031615-52031634 | MS.gene053672:intron | 30.0% | |
| AAATGTTCTTCCAATTGCTA+TGG | - | chr5.2:52030409-52030428 | None:intergenic | 30.0% | |
| AACAAAGAAATGATGGCATT+AGG | + | chr5.2:52030459-52030478 | MS.gene053672:CDS | 30.0% | |
| AATCTGATGGTAATAAGTGA+AGG | + | chr5.2:52031684-52031703 | MS.gene053672:intron | 30.0% | |
| ACTCTTATAATCAATACACC+GGG | - | chr5.2:52031120-52031139 | None:intergenic | 30.0% | |
| ACTTCTAAATAACTCTTCCA+GGG | - | chr5.2:52032079-52032098 | None:intergenic | 30.0% | |
| ATGAAAGACTATCAACTTGA+TGG | + | chr5.2:52030435-52030454 | MS.gene053672:CDS | 30.0% | |
| CAAAAAATTGGATTCGTGTT+TGG | - | chr5.2:52031917-52031936 | None:intergenic | 30.0% | |
| CATCTTAATATCCTGCAATT+AGG | - | chr5.2:52031858-52031877 | None:intergenic | 30.0% | |
| CTAATTGCAGGATATTAAGA+TGG | + | chr5.2:52031856-52031875 | MS.gene053672:intron | 30.0% | |
| GAATAGTGATTAATAGTTCG+GGG | + | chr5.2:52031592-52031611 | MS.gene053672:intron | 30.0% | |
| TGATGGAAACAAAGAAATGA+TGG | + | chr5.2:52030452-52030471 | MS.gene053672:CDS | 30.0% | |
| TTCTATAAACAGTTGTCCTA+GGG | - | chr5.2:52031065-52031084 | None:intergenic | 30.0% | |
| TTGTAATAGGATCTTTGCAA+AGG | - | chr5.2:52031007-52031026 | None:intergenic | 30.0% | |
| TTTCTATAAACAGTTGTCCT+AGG | - | chr5.2:52031066-52031085 | None:intergenic | 30.0% | |
| ! | TTTGGAGTGTATTTGAAAAG+CGG | - | chr5.2:52030715-52030734 | None:intergenic | 30.0% |
| !! | ACAAGTTAAGTTGAGCATAA+AGG | - | chr5.2:52031972-52031991 | None:intergenic | 30.0% |
| !! | TATACTGTCTTGCTATTATC+AGG | + | chr5.2:52030586-52030605 | MS.gene053672:intron | 30.0% |
| !! | TCTAGTTCTAGACATGAAAT+AGG | + | chr5.2:52031532-52031551 | MS.gene053672:intron | 30.0% |
| !!! | GTGTTTTAAGAGTTTCACAT+TGG | + | chr5.2:52031554-52031573 | MS.gene053672:intron | 30.0% |
| AGATCCTATTACAAGTCACA+AGG | + | chr5.2:52031013-52031032 | MS.gene053672:CDS | 35.0% | |
| ATACACTCCAAATGCAATTC+TGG | + | chr5.2:52030723-52030742 | MS.gene053672:CDS | 35.0% | |
| CCATCAGATTTCATTGGAAA+TGG | - | chr5.2:52031674-52031693 | None:intergenic | 35.0% | |
| CCATTTCCAATGAAATCTGA+TGG | + | chr5.2:52031671-52031690 | MS.gene053672:intron | 35.0% | |
| GACTTCTAAATAACTCTTCC+AGG | - | chr5.2:52032080-52032099 | None:intergenic | 35.0% | |
| GTAAGGACAGAAGTTGTATA+TGG | + | chr5.2:52031307-52031326 | MS.gene053672:intron | 35.0% | |
| GTTACTGATATTGATACCAG+TGG | + | chr5.2:52032045-52032064 | MS.gene053672:CDS | 35.0% | |
| GTTCAAAGACCAAAAATTGC+AGG | + | chr5.2:52031731-52031750 | MS.gene053672:intron | 35.0% | |
| TACAATCTGTATAGTGGTCT+AGG | + | chr5.2:52031243-52031262 | MS.gene053672:intron | 35.0% | |
| TAGATATCCTAACCATCGTT+TGG | - | chr5.2:52031762-52031781 | None:intergenic | 35.0% | |
| TATATGGTTCCGAAAATGTC+AGG | + | chr5.2:52031323-52031342 | MS.gene053672:intron | 35.0% | |
| TATTATCAGGTTCCTTCTCT+CGG | + | chr5.2:52030599-52030618 | MS.gene053672:intron | 35.0% | |
| TCAGCAATAAATTTCATGGC+TGG | + | chr5.2:52030622-52030641 | MS.gene053672:CDS | 35.0% | |
| TCGGTCAGCAATAAATTTCA+TGG | + | chr5.2:52030618-52030637 | MS.gene053672:CDS | 35.0% | |
| TGCAATTAGGCATCAGAAAT+AGG | - | chr5.2:52031845-52031864 | None:intergenic | 35.0% | |
| TTAGGAGCTATGAATGTTGT+TGG | + | chr5.2:52030477-52030496 | MS.gene053672:CDS | 35.0% | |
| ! | ATTTGACTTTGTTGCTTGCA+TGG | + | chr5.2:52030819-52030838 | MS.gene053672:CDS | 35.0% |
| ! | CATGTCTAGAACTAGACATT+AGG | - | chr5.2:52031528-52031547 | None:intergenic | 35.0% |
| ! | GTTTTTGCTTCAGTTGAGAT+AGG | + | chr5.2:52030859-52030878 | MS.gene053672:CDS | 35.0% |
| ! | TATTTCTGATGCCTAATTGC+AGG | + | chr5.2:52031844-52031863 | MS.gene053672:intron | 35.0% |
| ! | TTGGTTCATCCTGCAATTTT+TGG | - | chr5.2:52031743-52031762 | None:intergenic | 35.0% |
| ! | TTTGACTTTGTTGCTTGCAT+GGG | + | chr5.2:52030820-52030839 | MS.gene053672:CDS | 35.0% |
| !! | ACAAGGCAGCAATTTTGATA+TGG | + | chr5.2:52030785-52030804 | MS.gene053672:CDS | 35.0% |
| ACCATATGACCAAACTCGTT+AGG | - | chr5.2:52031627-52031646 | None:intergenic | 40.0% | |
| ACCTAACGAGTTTGGTCATA+TGG | + | chr5.2:52031623-52031642 | MS.gene053672:intron | 40.0% | |
| ATTGAGGCCAGAATTGCATT+TGG | - | chr5.2:52030733-52030752 | None:intergenic | 40.0% | |
| ATTTATTGCTGACCGAGAGA+AGG | - | chr5.2:52030614-52030633 | None:intergenic | 40.0% | |
| CAGGATATTAAGATGGCTGA+TGG | + | chr5.2:52031863-52031882 | MS.gene053672:intron | 40.0% | |
| CAGTCATTATCGAGTCATCT+AGG | + | chr5.2:52031495-52031514 | MS.gene053672:intron | 40.0% | |
| CTAGATGACTCGATAATGAC+TGG | - | chr5.2:52031497-52031516 | None:intergenic | 40.0% | |
| GACAGCACAAATGATGATTG+AGG | - | chr5.2:52030749-52030768 | None:intergenic | 40.0% | |
| TAAATAACTCTTCCAGGGCA+TGG | - | chr5.2:52032074-52032093 | None:intergenic | 40.0% | |
| TATCAGGAAGCCATAGCAAT+TGG | + | chr5.2:52030396-52030415 | MS.gene053672:CDS | 40.0% | |
| ! | ATTTTGTTGCATGTTGTGGC+AGG | + | chr5.2:52030972-52030991 | MS.gene053672:intron | 40.0% |
| ! | CATCAACCTTGTTGACTACA+AGG | + | chr5.2:52030768-52030787 | MS.gene053672:CDS | 40.0% |
| ! | CTAGTGACTCCTGACATTTT+CGG | - | chr5.2:52031335-52031354 | None:intergenic | 40.0% |
| ACTTCCTGCTATGTAGCAAC+TGG | + | chr5.2:52030507-52030526 | MS.gene053672:CDS | 45.0% | |
| AGCAATATCCAGAAGCCACA+AGG | + | chr5.2:52031091-52031110 | MS.gene053672:CDS | 45.0% | |
| ATGCGACGTGAATAGTGGTT+AGG | + | chr5.2:52031428-52031447 | MS.gene053672:intron | 45.0% | |
| CTTACCAGTTGCTACATAGC+AGG | - | chr5.2:52030514-52030533 | None:intergenic | 45.0% | |
| GCAATATCCAGAAGCCACAA+GGG | + | chr5.2:52031092-52031111 | MS.gene053672:CDS | 45.0% | |
| GGAGTCACTAGTTATGCATG+AGG | + | chr5.2:52031344-52031363 | MS.gene053672:intron | 45.0% | |
| GGATGAACCAAACGATGGTT+AGG | + | chr5.2:52031752-52031771 | MS.gene053672:intron | 45.0% | |
| TCGCATCACTGTCTAATGTG+AGG | - | chr5.2:52031414-52031433 | None:intergenic | 45.0% | |
| TCTTCCCCAGAATAGCAGTT+CGG | - | chr5.2:52031041-52031060 | None:intergenic | 45.0% | |
| TGCGACGTGAATAGTGGTTA+GGG | + | chr5.2:52031429-52031448 | MS.gene053672:intron | 45.0% | |
| TTGCAGGATGAACCAAACGA+TGG | + | chr5.2:52031747-52031766 | MS.gene053672:intron | 45.0% | |
| TTGCTGCCTTGTAGTCAACA+AGG | - | chr5.2:52030777-52030796 | None:intergenic | 45.0% | |
| TTGTGGCTTCTGGATATTGC+TGG | - | chr5.2:52031092-52031111 | None:intergenic | 45.0% | |
| !!! | CTTGCATGGGAGCATTTTTC+GGG | + | chr5.2:52030833-52030852 | MS.gene053672:CDS | 45.0% |
| !!! | GCTTGCATGGGAGCATTTTT+CGG | + | chr5.2:52030832-52030851 | MS.gene053672:CDS | 45.0% |
| !!! | TTGCATGGGAGCATTTTTCG+GGG | + | chr5.2:52030834-52030853 | MS.gene053672:CDS | 45.0% |
| CAGTGATGCGACGTGAATAG+TGG | + | chr5.2:52031423-52031442 | MS.gene053672:intron | 50.0% | |
| CTTCCCCAGAATAGCAGTTC+GGG | - | chr5.2:52031040-52031059 | None:intergenic | 50.0% | |
| TTCCCCAGAATAGCAGTTCG+GGG | - | chr5.2:52031039-52031058 | None:intergenic | 50.0% | |
| ! | CTATTCTGGGGAAGATCCCT+AGG | + | chr5.2:52031046-52031065 | MS.gene053672:CDS | 50.0% |
| ! | GGGGCCTTGTGACTTGTAAT+AGG | - | chr5.2:52031020-52031039 | None:intergenic | 50.0% |
| AAGGCCCCGAACTGCTATTC+TGG | + | chr5.2:52031032-52031051 | MS.gene053672:CDS | 55.0% | |
| AGGCCCCGAACTGCTATTCT+GGG | + | chr5.2:52031033-52031052 | MS.gene053672:CDS | 55.0% | |
| CAATACACCGGGAACCCTTG+TGG | - | chr5.2:52031109-52031128 | None:intergenic | 55.0% | |
| CCAGAAGCCACAAGGGTTCC+CGG | + | chr5.2:52031099-52031118 | MS.gene053672:CDS | 60.0% | |
| GGCCCCGAACTGCTATTCTG+GGG | + | chr5.2:52031034-52031053 | MS.gene053672:CDS | 60.0% | |
| TACCAGTGGCATCCATGCCC+TGG | + | chr5.2:52032059-52032078 | MS.gene053672:CDS | 60.0% | |
| TTCCAGGGCATGGATGCCAC+TGG | - | chr5.2:52032064-52032083 | None:intergenic | 60.0% | |
| ! | CATGGCTGGCTGCGAAACTG+CGG | + | chr5.2:52030636-52030655 | MS.gene053672:CDS | 60.0% |
| CCGGGAACCCTTGTGGCTTC+TGG | - | chr5.2:52031102-52031121 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 52030381 | 52032119 | 52030381 | ID=MS.gene053672 |
| chr5.2 | mRNA | 52030381 | 52032119 | 52030381 | ID=MS.gene053672.t1;Parent=MS.gene053672 |
| chr5.2 | exon | 52030381 | 52030528 | 52030381 | ID=MS.gene053672.t1.exon1;Parent=MS.gene053672.t1 |
| chr5.2 | CDS | 52030381 | 52030528 | 52030381 | ID=cds.MS.gene053672.t1;Parent=MS.gene053672.t1 |
| chr5.2 | exon | 52030608 | 52030894 | 52030608 | ID=MS.gene053672.t1.exon2;Parent=MS.gene053672.t1 |
| chr5.2 | CDS | 52030608 | 52030894 | 52030608 | ID=cds.MS.gene053672.t1;Parent=MS.gene053672.t1 |
| chr5.2 | exon | 52030994 | 52031120 | 52030994 | ID=MS.gene053672.t1.exon3;Parent=MS.gene053672.t1 |
| chr5.2 | CDS | 52030994 | 52031120 | 52030994 | ID=cds.MS.gene053672.t1;Parent=MS.gene053672.t1 |
| chr5.2 | exon | 52032043 | 52032119 | 52032043 | ID=MS.gene053672.t1.exon4;Parent=MS.gene053672.t1 |
| chr5.2 | CDS | 52032043 | 52032119 | 52032043 | ID=cds.MS.gene053672.t1;Parent=MS.gene053672.t1 |
| Gene Sequence |
| Protein sequence |