AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062785

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062785.t1 MTR_5g061880 88.580 648 15 5 1 595 14 655 0.0 1128
MS.gene062785.t1 MTR_3g073780 75.538 650 97 7 1 595 17 659 0.0 932
MS.gene062785.t1 MTR_3g073780 75.563 577 79 7 1 522 17 586 0.0 822
MS.gene062785.t1 MTR_2g008470 63.975 644 168 8 4 590 18 654 0.0 798
MS.gene062785.t1 MTR_2g008470 63.975 644 168 8 4 590 37 673 0.0 797
MS.gene062785.t1 MTR_3g073780 75.410 549 74 6 1 494 17 559 0.0 781
MS.gene062785.t1 MTR_1g071530 49.604 631 260 5 17 595 21 645 0.0 611
MS.gene062785.t1 MTR_7g095430 48.077 624 266 5 17 588 18 635 0.0 600
MS.gene062785.t1 MTR_2g102243 48.494 631 267 5 17 595 23 647 0.0 591
MS.gene062785.t1 MTR_4g084620 47.287 645 278 8 1 591 1 637 0.0 583
MS.gene062785.t1 MTR_3g087740 49.516 620 248 10 23 587 40 649 0.0 581
MS.gene062785.t1 MTR_5g061860 48.265 634 255 9 22 592 29 652 0.0 578
MS.gene062785.t1 MTR_4g011970 47.068 631 276 5 17 595 30 654 0.0 570
MS.gene062785.t1 MTR_3g073730 48.929 607 246 7 47 595 60 660 0.0 568
MS.gene062785.t1 MTR_4g084640 47.634 634 266 7 17 595 22 644 0.0 564
MS.gene062785.t1 MTR_7g095430 48.566 558 229 5 17 522 18 569 0.0 542
MS.gene062785.t1 MTR_2g102243 48.746 558 228 5 17 522 23 574 0.0 534
MS.gene062785.t1 MTR_5g061860 49.533 535 199 7 22 494 29 554 1.42e-173 504
MS.gene062785.t1 MTR_6g086170 39.336 633 321 6 12 591 5 627 4.04e-163 480
MS.gene062785.t1 MTR_3g087730 37.721 623 311 14 34 592 49 658 5.17e-136 411
MS.gene062785.t1 MTR_7g022870 34.122 592 328 11 46 587 57 636 4.95e-107 338
MS.gene062785.t1 MTR_7g022870 34.345 527 284 11 46 522 57 571 1.09e-89 288
MS.gene062785.t1 MTR_6g024420 46.491 114 47 2 191 304 67 166 1.51e-25 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062785.t1 AT1G22150 70.983 641 127 6 7 594 21 655 0.0 865
MS.gene062785.t1 AT1G22150 70.983 641 127 6 7 594 21 655 0.0 865
MS.gene062785.t1 AT1G22150 70.983 641 127 6 7 594 21 655 0.0 865
MS.gene062785.t1 AT1G78000 69.921 635 132 6 13 594 24 652 0.0 845
MS.gene062785.t1 AT1G78000 69.921 635 132 6 13 594 24 652 0.0 845
MS.gene062785.t1 AT1G78000 69.921 635 132 6 13 594 24 652 0.0 845
MS.gene062785.t1 AT4G08620 64.025 631 168 5 17 594 23 647 0.0 783
MS.gene062785.t1 AT1G78000 70.169 590 117 6 13 549 24 607 0.0 781
MS.gene062785.t1 AT1G22150 70.475 569 109 6 7 522 21 583 0.0 749
MS.gene062785.t1 AT1G78000 69.805 563 111 6 13 522 24 580 0.0 733
MS.gene062785.t1 AT3G51895 48.137 644 272 7 1 588 1 638 0.0 617
MS.gene062785.t1 AT3G51895 48.137 644 272 7 1 588 46 683 0.0 617
MS.gene062785.t1 AT1G78000 73.258 445 74 3 123 522 1 445 0.0 598
MS.gene062785.t1 AT3G15990 47.436 624 270 5 17 588 27 644 0.0 587
MS.gene062785.t1 AT1G78000 67.155 478 98 6 13 437 24 495 0.0 583
MS.gene062785.t1 AT1G23090 46.730 627 275 6 17 590 4 624 0.0 559
MS.gene062785.t1 AT5G10180 48.056 643 267 10 5 587 37 672 0.0 553
MS.gene062785.t1 AT4G02700 45.498 633 285 7 8 587 2 627 0.0 543
MS.gene062785.t1 AT1G77990 47.504 581 244 6 59 584 89 663 2.28e-179 523
MS.gene062785.t1 AT5G19600 39.843 635 310 9 8 587 6 623 1.47e-156 463
MS.gene062785.t1 AT1G23090 50.000 456 206 2 157 590 37 492 4.83e-155 454
MS.gene062785.t1 AT1G23090 50.000 456 206 2 157 590 37 492 4.83e-155 454
MS.gene062785.t1 AT1G23090 50.000 456 206 2 157 590 37 492 4.83e-155 454
MS.gene062785.t1 AT5G13550 33.940 604 322 11 45 587 55 642 1.97e-107 338
MS.gene062785.t1 AT3G12520 32.432 629 345 12 9 587 15 613 2.24e-105 332
MS.gene062785.t1 AT3G12520 32.432 629 345 12 9 587 31 629 3.13e-105 332
MS.gene062785.t1 AT3G12520 32.397 534 284 10 9 494 31 535 2.84e-86 278

Find 144 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTCAAAGCTTGCAAATT+TGG 0.134167 5.2:+52172109 MS.gene062785:CDS
TTACCTTTCTTTAACATAAT+TGG 0.142103 5.2:-52174467 None:intergenic
CGCTGCAATAGTCGGATTTA+TGG 0.166264 5.2:+52172722 MS.gene062785:CDS
TCAAACTTTGCAAACTTTCT+TGG 0.182465 5.2:+52175924 MS.gene062785:CDS
CTTTCTTGAGCAGCTTGTTC+TGG 0.237374 5.2:+52175863 MS.gene062785:intron
CCGGGAACCCTTGTGGCTTC+TGG 0.244498 5.2:-52174400 None:intergenic
TACCCTCCAAAAGTTAATTC+TGG 0.255929 5.2:+52171914 MS.gene062785:CDS
CAATTCCCAGAATTAACTTT+TGG 0.286399 5.2:-52171920 None:intergenic
AGAAGGGCCAGAAGTTCTTT+TGG 0.294844 5.2:+52173104 MS.gene062785:CDS
GCCATATTCCTTATTATTGC+TGG 0.296925 5.2:+52171945 MS.gene062785:CDS
CCAACTAAGTATAGGGAATA+TGG 0.299920 5.2:-52171880 None:intergenic
AATAGCTCTTCAACAGCTTA+AGG 0.302422 5.2:+52172761 MS.gene062785:CDS
AAGGCCCCGAACTGCTATTC+TGG 0.303809 5.2:+52174333 MS.gene062785:CDS
GGCCGTGGTTTCTCTCTTGT+TGG 0.307403 5.2:+52172316 MS.gene062785:CDS
ACCAGCAATAATAAGGAATA+TGG 0.308116 5.2:-52171946 None:intergenic
ATACACTCCAAATGCAATTC+TGG 0.309038 5.2:+52174023 MS.gene062785:CDS
TACTCAGTTGGATGTGTATT+CGG 0.309165 5.2:-52172365 None:intergenic
GCCGTGGTTTCTCTCTTGTT+GGG 0.313630 5.2:+52172317 MS.gene062785:CDS
CATATTCCCTATACTTAGTT+GGG 0.322705 5.2:+52171881 MS.gene062785:CDS
CTGGAACCCAAAAGAACTTC+TGG 0.328476 5.2:-52173111 None:intergenic
CCTTGTGCGTGTATGGTTCC+TGG 0.330002 5.2:-52171731 None:intergenic
AAAGTCCCGTAAGTTAATTC+TGG 0.338679 5.2:+52171848 MS.gene062785:CDS
GACTTCTAAATAACTCTTCC+AGG 0.340225 5.2:-52175377 None:intergenic
TTGTGGCTTCTGGATATTGC+TGG 0.340906 5.2:-52174390 None:intergenic
TAGTTAAACCAGCAATAATA+AGG 0.352013 5.2:-52171953 None:intergenic
ATGAAAGACTATCAACTTGA+TGG 0.352997 5.2:+52173735 MS.gene062785:CDS
TTCTTCCCCAACTAAGTATA+GGG 0.354633 5.2:-52171887 None:intergenic
CTTCCCCAGAATAGCAGTTC+GGG 0.364574 5.2:-52174338 None:intergenic
CCAGAAGCCACAAGGGTTCC+CGG 0.366444 5.2:+52174400 MS.gene062785:CDS
TCTTCAAAAGAGAGAAGTTC+AGG 0.372341 5.2:+52175398 MS.gene062785:CDS
CTTGCGAAAGGCGTTAGAAT+TGG 0.374842 5.2:+52173561 MS.gene062785:CDS
CAAGGGTCTTCAGCTAGCTT+TGG 0.377885 5.2:-52175996 None:intergenic
GCTGCAATAGTCGGATTTAT+GGG 0.384000 5.2:+52172723 MS.gene062785:CDS
CGACTATTGCAGCGTGTGAT+AGG 0.387151 5.2:-52172713 None:intergenic
ATAGCTCTTCAACAGCTTAA+GGG 0.388577 5.2:+52172762 MS.gene062785:CDS
GGGGCCTTGTGACTTGTAAT+AGG 0.389141 5.2:-52174318 None:intergenic
CAACAGCTTAAGGGTTTCCT+TGG 0.394046 5.2:+52172771 MS.gene062785:CDS
CCATATTCCCTATACTTAGT+TGG 0.401021 5.2:+52171880 MS.gene062785:CDS
ATTGAGGCCAGAATTGCATT+TGG 0.401265 5.2:-52174030 None:intergenic
TCCAAAACAAAACCTCTTCA+AGG 0.403824 5.2:+52171764 MS.gene062785:CDS
TTTCTATAAACAGTTGTCCT+AGG 0.415898 5.2:-52174364 None:intergenic
GATATCAATGGAGCAATTGC+TGG 0.416195 5.2:-52173130 None:intergenic
GTTCTTCCCCAACTAAGTAT+AGG 0.426410 5.2:-52171888 None:intergenic
CAATTCCCAGAATTAACTTA+CGG 0.430079 5.2:-52171854 None:intergenic
ACTCCAACCTTGTGCGTGTA+TGG 0.432344 5.2:-52171738 None:intergenic
AACAAAGAAATGATGGCATT+AGG 0.432536 5.2:+52173759 MS.gene062785:CDS
AATTCCCAGAATTAACTTAC+GGG 0.433403 5.2:-52171853 None:intergenic
TATCAGGAAGCCATAGCAAT+TGG 0.433820 5.2:+52173696 MS.gene062785:intron
ACCCTCCAAAAGTTAATTCT+GGG 0.438852 5.2:+52171915 MS.gene062785:CDS
AGGCCCCGAACTGCTATTCT+GGG 0.438860 5.2:+52174334 MS.gene062785:CDS
ATGTTTCTCTTACGGTGTAA+TGG 0.443028 5.2:-52171791 None:intergenic
CAGCTTGTTCTGGCAAATCC+TGG 0.448905 5.2:+52175873 MS.gene062785:intron
TCGGTCAGCAGTAAATTTCA+TGG 0.451275 5.2:+52173918 MS.gene062785:CDS
CGAGAAGAATGTTTCTCTTA+CGG 0.455600 5.2:-52171799 None:intergenic
GTTAGAATTGGCATTGTGGC+TGG 0.459682 5.2:+52173573 MS.gene062785:CDS
CAACAGCCTCTGCAACAGTT+AGG 0.464329 5.2:-52175962 None:intergenic
TAAATTTCCTTCACAGAGGA+AGG 0.466479 5.2:-52173522 None:intergenic
TTAGGAGCTATGAATGTTGT+TGG 0.466708 5.2:+52173777 MS.gene062785:CDS
CGTAAGAGAAACATTCTTCT+CGG 0.469662 5.2:+52171800 MS.gene062785:CDS
AAGTCCCGTAAGTTAATTCT+GGG 0.470217 5.2:+52171849 MS.gene062785:CDS
TGCGATAGGGACAGTGGCCG+TGG 0.470235 5.2:+52172301 MS.gene062785:CDS
TAGGTAAAACACATAGAGAA+AGG 0.474007 5.2:+52173492 MS.gene062785:intron
TTTGTCTTCTTCACAAGGCC+AGG 0.474993 5.2:+52171713 MS.gene062785:CDS
AAATGTTCTTCCAATTGCTA+TGG 0.475056 5.2:-52173706 None:intergenic
AACAGCTTAAGGGTTTCCTT+GGG 0.476924 5.2:+52172772 MS.gene062785:CDS
ACTTCCTGCTATGTAGCAAC+TGG 0.480021 5.2:+52173807 MS.gene062785:CDS
TCTTCCCCAGAATAGCAGTT+CGG 0.480188 5.2:-52174339 None:intergenic
CCGTGGTTTCTCTCTTGTTG+GGG 0.482794 5.2:+52172318 MS.gene062785:CDS
TATTATCAGGTTCCTTCTCT+CGG 0.490063 5.2:+52173899 MS.gene062785:intron
TGATGGAAACAAAGAAATGA+TGG 0.492078 5.2:+52173752 MS.gene062785:CDS
GACTTTGTCTGATCTTTGAA+AGG 0.507294 5.2:-52171831 None:intergenic
TACCAGTGGCATCCATGCCC+TGG 0.511166 5.2:+52175359 MS.gene062785:CDS
ACTCCAATTATGTTAAAGAA+AGG 0.512105 5.2:+52174464 MS.gene062785:CDS
CTATTCTGGGGAAGATCCCT+AGG 0.514412 5.2:+52174347 MS.gene062785:CDS
AAAGAAAGCATACTCCATGA+TGG 0.514535 5.2:-52172857 None:intergenic
CATCAACCTTGTTGACTACA+AGG 0.515925 5.2:+52174068 MS.gene062785:CDS
TAAATAACTCTTCCAGGGCA+TGG 0.517398 5.2:-52175371 None:intergenic
TGTTGTCGATCAGGGAAAGA+AGG 0.517938 5.2:+52173087 MS.gene062785:intron
AACTCTTATAATCAATACAC+CGG 0.520076 5.2:-52174419 None:intergenic
ATTTGACTTTGTTGCTTGCA+TGG 0.523266 5.2:+52174119 MS.gene062785:CDS
TTTGACTTTGTTGCTTGCAT+GGG 0.525969 5.2:+52174120 MS.gene062785:CDS
TTCTATAAACAGTTGTCCTA+GGG 0.528944 5.2:-52174363 None:intergenic
TTGTCTATCACTAGTGGACC+AGG 0.533257 5.2:-52175891 None:intergenic
AACACCATGCTTGTCTGCAC+GGG 0.536403 5.2:-52173185 None:intergenic
CAACACCATGCTTGTCTGCA+CGG 0.537870 5.2:-52173186 None:intergenic
AGCAAGTCTTCATACTCAGT+TGG 0.538042 5.2:-52172377 None:intergenic
CTTACCAGTTGCTACATAGC+AGG 0.540351 5.2:-52173811 None:intergenic
ACCGGTGATTACCTTGCGAA+AGG 0.542435 5.2:+52173549 MS.gene062785:CDS
CTAATTGCAGGATATTAAGA+TGG 0.551261 5.2:+52175157 MS.gene062785:intron
AGCAATATCCAGAAGCCACA+AGG 0.552472 5.2:+52174392 MS.gene062785:CDS
TCAGCAGTAAATTTCATGGC+TGG 0.553871 5.2:+52173922 MS.gene062785:CDS
TTGGTCTGTAAACAGGACAT+TGG 0.557141 5.2:+52172086 MS.gene062785:intron
TGCAAGTCTCTGCATTCCCC+AGG 0.559253 5.2:+52171977 MS.gene062785:CDS
TGTCCCTATCGCAATGTCGC+GGG 0.559527 5.2:-52172291 None:intergenic
TTTGTCTGATCTTTGAAAGG+AGG 0.561020 5.2:-52171828 None:intergenic
GATAAATCCTTCCTCTGTGA+AGG 0.562675 5.2:+52173515 MS.gene062785:CDS
CTATCACACGCTGCAATAGT+CGG 0.562859 5.2:+52172714 MS.gene062785:CDS
CAGGATATTAAGATGGCTGA+TGG 0.564002 5.2:+52175164 MS.gene062785:intron
GAACCATACACGCACAAGGT+TGG 0.567049 5.2:+52171735 MS.gene062785:CDS
AGGTAAAACACATAGAGAAA+GGG 0.567158 5.2:+52173493 MS.gene062785:intron
TTCCAGGGCATGGATGCCAC+TGG 0.573861 5.2:-52175361 None:intergenic
GTATTCTCATCAGCCCATCA+TGG 0.578077 5.2:+52172843 MS.gene062785:CDS
CTGCAATAGTCGGATTTATG+GGG 0.578121 5.2:+52172724 MS.gene062785:CDS
CAATTCTAACGCCTTTCGCA+AGG 0.578178 5.2:-52173560 None:intergenic
AAGAAAGCATACTCCATGAT+GGG 0.579121 5.2:-52172856 None:intergenic
AGAAGTTTGTCTTCTTCACA+AGG 0.581983 5.2:+52171708 MS.gene062785:CDS
AGTTCCCGCGACATTGCGAT+AGG 0.583400 5.2:+52172287 MS.gene062785:CDS
TTGTAATAGGATCTTTGCAA+AGG 0.587197 5.2:-52174305 None:intergenic
GAGAGTACGACAGATATCAA+TGG 0.588423 5.2:-52173142 None:intergenic
TGGAGTTTGTCTATCACTAG+TGG 0.589342 5.2:-52175897 None:intergenic
GTTGTCGATCAGGGAAAGAA+GGG 0.590642 5.2:+52173088 MS.gene062785:intron
TGTAATGGAATTCCTTGAAG+AGG 0.591832 5.2:-52171776 None:intergenic
GCCTTTCGCAAGGTAATCAC+CGG 0.593120 5.2:-52173550 None:intergenic
CTGTCCCTATCGCAATGTCG+CGG 0.603245 5.2:-52172292 None:intergenic
TGCAATAGTCGGATTTATGG+GGG 0.606663 5.2:+52172725 MS.gene062785:CDS
ATATTCCCTATACTTAGTTG+GGG 0.608360 5.2:+52171882 MS.gene062785:CDS
CAATACACCGGGAACCCTTG+TGG 0.612119 5.2:-52174407 None:intergenic
CATGGCTGGCTGCGAAACTG+CGG 0.618353 5.2:+52173936 MS.gene062785:CDS
ACTTCTAAATAACTCTTCCA+GGG 0.621237 5.2:-52175376 None:intergenic
ATTTACTGCTGACCGAGAGA+AGG 0.621565 5.2:-52173911 None:intergenic
GTTCCCGCGACATTGCGATA+GGG 0.626929 5.2:+52172288 MS.gene062785:CDS
AGGCGTTAGAATTGGCATTG+TGG 0.630919 5.2:+52173569 MS.gene062785:CDS
TTGCTGCCTTGTAGTCAACA+AGG 0.634329 5.2:-52174074 None:intergenic
AGTTTGCAAAGTTTGATGTG+TGG 0.641941 5.2:-52175917 None:intergenic
GTTACTGATATTGATACCAG+TGG 0.647299 5.2:+52175345 MS.gene062785:CDS
GATCTTCCTAACTGTTGCAG+AGG 0.649976 5.2:+52175956 MS.gene062785:CDS
CCAGGAACCATACACGCACA+AGG 0.650752 5.2:+52171731 MS.gene062785:CDS
CCCCAACAAGAGAGAAACCA+CGG 0.650873 5.2:-52172318 None:intergenic
GACAGCACAAATGATGATTG+AGG 0.651653 5.2:-52174046 None:intergenic
GGTTATGTATACAAACAAAG+TGG 0.654086 5.2:-52173164 None:intergenic
ATGACGGCATAAATCAGTGG+TGG 0.660901 5.2:-52172260 None:intergenic
GCAATATCCAGAAGCCACAA+GGG 0.661125 5.2:+52174393 MS.gene062785:CDS
TTCCCCAGAATAGCAGTTCG+GGG 0.661856 5.2:-52174337 None:intergenic
GTCGCGGGAACTACACATGA+CGG 0.663134 5.2:-52172276 None:intergenic
CACATGACGGCATAAATCAG+TGG 0.672226 5.2:-52172263 None:intergenic
ACTCTTATAATCAATACACC+GGG 0.673544 5.2:-52174418 None:intergenic
TTTGGAGTGTATTTGAAAAG+CGG 0.675812 5.2:-52174012 None:intergenic
GGCCCCGAACTGCTATTCTG+GGG 0.677105 5.2:+52174335 MS.gene062785:CDS
CGACATTGCGATAGGGACAG+TGG 0.677278 5.2:+52172295 MS.gene062785:CDS
AAAATAAATTTCCTTCACAG+AGG 0.679400 5.2:-52173526 None:intergenic
AGATCCTATTACAAGTCACA+AGG 0.684935 5.2:+52174314 MS.gene062785:CDS
ATAACCCGTGCAGACAAGCA+TGG 0.686605 5.2:+52173181 MS.gene062785:CDS
GCAATAGTCGGATTTATGGG+GGG 0.696030 5.2:+52172726 MS.gene062785:CDS
CTGTTGAAGAGCTATTGTGA+TGG 0.722345 5.2:-52172754 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATCAAAACATAAAAA+AGG - chr5.2:52172067-52172086 None:intergenic 10.0%
!! ATATATCAAAACATAAAAAA+GGG - chr5.2:52172066-52172085 None:intergenic 10.0%
!! TTAACATACAAATATATATA+GGG - chr5.2:52175779-52175798 None:intergenic 10.0%
!!! GAATTAATTTAATTTATCTA+TGG - chr5.2:52175739-52175758 None:intergenic 10.0%
!!! TTTTTATGTTTTGATATATT+TGG + chr5.2:52172067-52172086 MS.gene062785:intron 10.0%
!! AAAAAAAATTACAAACAGAA+AGG - chr5.2:52174503-52174522 None:intergenic 15.0%
!! AAAAAAATTACAAACAGAAA+GGG - chr5.2:52174502-52174521 None:intergenic 15.0%
!! ACATAATTAGAAAATAAGAA+AGG - chr5.2:52173063-52173082 None:intergenic 15.0%
!! GTTAACATACAAATATATAT+AGG - chr5.2:52175780-52175799 None:intergenic 15.0%
!! TATATATATCTCAACTAAAA+AGG + chr5.2:52175835-52175854 MS.gene062785:intron 15.0%
!! TATATCAAAACATAAAAAAG+GGG - chr5.2:52172065-52172084 None:intergenic 15.0%
!!! AAATTTAAGATAGACTATAT+TGG - chr5.2:52174769-52174788 None:intergenic 15.0%
!! AATTAATACAATCTGTATAG+TGG + chr5.2:52174538-52174557 MS.gene062785:intron 20.0%
!! ATATTAATAACTATGCTGTA+AGG + chr5.2:52174592-52174611 MS.gene062785:intron 20.0%
!! TATAAGATATTTCGGATTAT+TGG - chr5.2:52174679-52174698 None:intergenic 20.0%
!! TATGTAACATTTCTGATTAA+AGG - chr5.2:52172594-52172613 None:intergenic 20.0%
!! TGGCAAACTATATTATTAAT+TGG + chr5.2:52172970-52172989 MS.gene062785:intron 20.0%
!! TTACCTTTCTTTAACATAAT+TGG - chr5.2:52174470-52174489 None:intergenic 20.0%
!! TTAGAAAATAAGAAAGGTTT+AGG - chr5.2:52173057-52173076 None:intergenic 20.0%
!! TTGAATAGTGATTAATAGTT+CGG + chr5.2:52174891-52174910 MS.gene062785:intron 20.0%
!!! AATCTAAAGTAAATTTACCT+GGG - chr5.2:52171997-52172016 None:intergenic 20.0%
!!! ACACTGATTATAAGATATTT+CGG - chr5.2:52174687-52174706 None:intergenic 20.0%
!!! GATAATTTTTCCTTTCTTTT+CGG + chr5.2:52175109-52175128 MS.gene062785:intron 20.0%
! AAAATAAATTTCCTTCACAG+AGG - chr5.2:52173529-52173548 None:intergenic 25.0%
! AACAAAGCTTGAATCTATAA+AGG - chr5.2:52172240-52172259 None:intergenic 25.0%
! AACTCTTATAATCAATACAC+CGG - chr5.2:52174422-52174441 None:intergenic 25.0%
! ACAAAGCTTGAATCTATAAA+GGG - chr5.2:52172239-52172258 None:intergenic 25.0%
! ACAAATTAAACACACATTTG+AGG - chr5.2:52175318-52175337 None:intergenic 25.0%
! ACATCTCAACTATCAAAAAT+TGG - chr5.2:52175230-52175249 None:intergenic 25.0%
! ACTCCAATTATGTTAAAGAA+AGG + chr5.2:52174464-52174483 MS.gene062785:CDS 25.0%
! ACTGATTAATATCTAACATC+TGG + chr5.2:52172950-52172969 MS.gene062785:intron 25.0%
! ATAATGAGAACTCAAGAAAA+CGG - chr5.2:52173658-52173677 None:intergenic 25.0%
! ATTATTAACAGTGTTGTGTT+CGG - chr5.2:52172512-52172531 None:intergenic 25.0%
! TAATAAGATAACTGAGTCTT+TGG - chr5.2:52174205-52174224 None:intergenic 25.0%
! TAGTTAAACCAGCAATAATA+AGG - chr5.2:52171956-52171975 None:intergenic 25.0%
! TGAATAGTGATTAATAGTTC+GGG + chr5.2:52174892-52174911 MS.gene062785:intron 25.0%
! TTAATTATTGCCGAAAAGAA+AGG - chr5.2:52175122-52175141 None:intergenic 25.0%
! TTATTACCATCAGATTTCAT+TGG - chr5.2:52174981-52175000 None:intergenic 25.0%
!! ATCTAAAGTAAATTTACCTG+GGG - chr5.2:52171996-52172015 None:intergenic 25.0%
!! ATGTTTTCTGTGTTTTTCTT+TGG + chr5.2:52172179-52172198 MS.gene062785:intron 25.0%
!! ATTAATTTTGTTGCATGTTG+TGG + chr5.2:52174269-52174288 MS.gene062785:intron 25.0%
!! CAATCTAAAGTAAATTTACC+TGG - chr5.2:52171998-52172017 None:intergenic 25.0%
!!! CATGTTACATTTTGATTATC+AGG + chr5.2:52173680-52173699 MS.gene062785:intron 25.0%
!!! GTGAAGGAAATTTATTTTAC+CGG + chr5.2:52173531-52173550 MS.gene062785:CDS 25.0%
!!! TTTCAGTTTTAGTTTCTGAT+TGG + chr5.2:52174238-52174257 MS.gene062785:intron 25.0%
AAACAGAAGAAAAGCAAGAA+AGG - chr5.2:52173001-52173020 None:intergenic 30.0%
AAACATTAACCTAACGAGTT+TGG + chr5.2:52174916-52174935 MS.gene062785:intron 30.0%
AAATGTTCTTCCAATTGCTA+TGG - chr5.2:52173709-52173728 None:intergenic 30.0%
AACAAAGAAATGATGGCATT+AGG + chr5.2:52173759-52173778 MS.gene062785:CDS 30.0%
AATCAAAACATGCATGAAGA+TGG - chr5.2:52175565-52175584 None:intergenic 30.0%
AATCTGATGGTAATAAGTGA+AGG + chr5.2:52174985-52175004 MS.gene062785:intron 30.0%
AATTCCCAGAATTAACTTAC+GGG - chr5.2:52171856-52171875 None:intergenic 30.0%
ACCAGCAATAATAAGGAATA+TGG - chr5.2:52171949-52171968 None:intergenic 30.0%
ACTCTTATAATCAATACACC+GGG - chr5.2:52174421-52174440 None:intergenic 30.0%
ACTTCTAAATAACTCTTCCA+GGG - chr5.2:52175379-52175398 None:intergenic 30.0%
AGGTAAAACACATAGAGAAA+GGG + chr5.2:52173493-52173512 MS.gene062785:intron 30.0%
ATACTCAAAGCTTGCAAATT+TGG + chr5.2:52172109-52172128 MS.gene062785:CDS 30.0%
ATATTCCCTATACTTAGTTG+GGG + chr5.2:52171882-52171901 MS.gene062785:CDS 30.0%
ATCAAAACATGCATGAAGAT+GGG - chr5.2:52175564-52175583 None:intergenic 30.0%
ATCAATCAAAAATCCTAACC+TGG - chr5.2:52172691-52172710 None:intergenic 30.0%
ATGAAAGACTATCAACTTGA+TGG + chr5.2:52173735-52173754 MS.gene062785:CDS 30.0%
ATGTTATATGTTGTCGATCA+GGG + chr5.2:52173079-52173098 MS.gene062785:intron 30.0%
CAATTCCCAGAATTAACTTA+CGG - chr5.2:52171857-52171876 None:intergenic 30.0%
CATATTCCCTATACTTAGTT+GGG + chr5.2:52171881-52171900 MS.gene062785:CDS 30.0%
CATCTTAATATCCTGCAATT+AGG - chr5.2:52175159-52175178 None:intergenic 30.0%
CTAATTGCAGGATATTAAGA+TGG + chr5.2:52175157-52175176 MS.gene062785:intron 30.0%
GAATAGTGATTAATAGTTCG+GGG + chr5.2:52174893-52174912 MS.gene062785:intron 30.0%
GATATATTTGGTCTGTAAAC+AGG + chr5.2:52172079-52172098 MS.gene062785:intron 30.0%
GCTAAAAGAAGTTTATGAAC+AGG - chr5.2:52173318-52173337 None:intergenic 30.0%
GGTTATGTATACAAACAAAG+TGG - chr5.2:52173167-52173186 None:intergenic 30.0%
TAGGTAAAACACATAGAGAA+AGG + chr5.2:52173492-52173511 MS.gene062785:intron 30.0%
TATGTTATATGTTGTCGATC+AGG + chr5.2:52173078-52173097 MS.gene062785:intron 30.0%
TCAAAAATTGGATTCGTGTT+TGG - chr5.2:52175218-52175237 None:intergenic 30.0%
TCAAACTTTGCAAACTTTCT+TGG + chr5.2:52175924-52175943 MS.gene062785:CDS 30.0%
TGATGGAAACAAAGAAATGA+TGG + chr5.2:52173752-52173771 MS.gene062785:CDS 30.0%
TTCTATAAACAGTTGTCCTA+GGG - chr5.2:52174366-52174385 None:intergenic 30.0%
TTGTAATAGGATCTTTGCAA+AGG - chr5.2:52174308-52174327 None:intergenic 30.0%
TTTCTATAAACAGTTGTCCT+AGG - chr5.2:52174367-52174386 None:intergenic 30.0%
! CAATTCCCAGAATTAACTTT+TGG - chr5.2:52171923-52171942 None:intergenic 30.0%
! TTTGGAGTGTATTTGAAAAG+CGG - chr5.2:52174015-52174034 None:intergenic 30.0%
! TTTTATCTATTGACGTGTGT+AGG + chr5.2:52173473-52173492 MS.gene062785:intron 30.0%
!! AAGAGTGCTTACAATATACT+TGG - chr5.2:52173025-52173044 None:intergenic 30.0%
!! ACAAGTTAAGTTGAGCATAA+AGG - chr5.2:52175272-52175291 None:intergenic 30.0%
!! TATACTGTCTTGCTATTATC+AGG + chr5.2:52173886-52173905 MS.gene062785:intron 30.0%
!! TCTAGTTCTAGACATGAAAT+AGG + chr5.2:52174833-52174852 MS.gene062785:intron 30.0%
!!! AGGTATGACTCATTGATTTT+AGG + chr5.2:52172423-52172442 MS.gene062785:intron 30.0%
!!! CATTATTGATTTTCGTGTGA+AGG - chr5.2:52172889-52172908 None:intergenic 30.0%
!!! GATTCATGTTTTGGAATATG+CGG + chr5.2:52175490-52175509 MS.gene062785:intron 30.0%
!!! GCATGTATTGATTCATGTTT+TGG + chr5.2:52175481-52175500 MS.gene062785:intron 30.0%
!!! GTGTTTTAAGAGTTTCACAT+TGG + chr5.2:52174855-52174874 MS.gene062785:intron 30.0%
AAAGTCCCGTAAGTTAATTC+TGG + chr5.2:52171848-52171867 MS.gene062785:CDS 35.0%
AAGTCCCGTAAGTTAATTCT+GGG + chr5.2:52171849-52171868 MS.gene062785:CDS 35.0%
AATAGCTCTTCAACAGCTTA+AGG + chr5.2:52172761-52172780 MS.gene062785:CDS 35.0%
ACCCTCCAAAAGTTAATTCT+GGG + chr5.2:52171915-52171934 MS.gene062785:CDS 35.0%
ACGAATCACTAACATAGACA+CGG + chr5.2:52172483-52172502 MS.gene062785:intron 35.0%
AGAAGTTTGTCTTCTTCACA+AGG + chr5.2:52171708-52171727 MS.gene062785:CDS 35.0%
AGATCCTATTACAAGTCACA+AGG + chr5.2:52174314-52174333 MS.gene062785:CDS 35.0%
AGTTTGCAAAGTTTGATGTG+TGG - chr5.2:52175920-52175939 None:intergenic 35.0%
ATACACTCCAAATGCAATTC+TGG + chr5.2:52174023-52174042 MS.gene062785:CDS 35.0%
ATAGCTCTTCAACAGCTTAA+GGG + chr5.2:52172762-52172781 MS.gene062785:CDS 35.0%
ATGCTAACGACATACCAATT+GGG + chr5.2:52172653-52172672 MS.gene062785:intron 35.0%
ATGTCGTTAGCATAAGAGTT+TGG - chr5.2:52172646-52172665 None:intergenic 35.0%
ATGTTTCTCTTACGGTGTAA+TGG - chr5.2:52171794-52171813 None:intergenic 35.0%
CCAACTAAGTATAGGGAATA+TGG - chr5.2:52171883-52171902 None:intergenic 35.0%
CCATATTCCCTATACTTAGT+TGG + chr5.2:52171880-52171899 MS.gene062785:CDS 35.0%
CCATCAGATTTCATTGGAAA+TGG - chr5.2:52174975-52174994 None:intergenic 35.0%
CCATTTCCAATGAAATCTGA+TGG + chr5.2:52174972-52174991 MS.gene062785:intron 35.0%
CGAGAAGAATGTTTCTCTTA+CGG - chr5.2:52171802-52171821 None:intergenic 35.0%
CGTAAGAGAAACATTCTTCT+CGG + chr5.2:52171800-52171819 MS.gene062785:CDS 35.0%
GACTTCTAAATAACTCTTCC+AGG - chr5.2:52175380-52175399 None:intergenic 35.0%
GACTTTGTCTGATCTTTGAA+AGG - chr5.2:52171834-52171853 None:intergenic 35.0%
GCCATATTCCTTATTATTGC+TGG + chr5.2:52171945-52171964 MS.gene062785:CDS 35.0%
GTAAGGACAGAAGTTGTATA+TGG + chr5.2:52174609-52174628 MS.gene062785:intron 35.0%
GTTACTGATATTGATACCAG+TGG + chr5.2:52175345-52175364 MS.gene062785:CDS 35.0%
GTTCAAAGACCAAAAATTGC+AGG + chr5.2:52175032-52175051 MS.gene062785:intron 35.0%
TAAATTTCCTTCACAGAGGA+AGG - chr5.2:52173525-52173544 None:intergenic 35.0%
TACAATCTGTATAGTGGTCT+AGG + chr5.2:52174544-52174563 MS.gene062785:intron 35.0%
TACCCTCCAAAAGTTAATTC+TGG + chr5.2:52171914-52171933 MS.gene062785:CDS 35.0%
TACTCAGTTGGATGTGTATT+CGG - chr5.2:52172368-52172387 None:intergenic 35.0%
TAGATATCCTAACCATCGTT+TGG - chr5.2:52175063-52175082 None:intergenic 35.0%
TATATGGTTCCGAAAATGTC+AGG + chr5.2:52174625-52174644 MS.gene062785:intron 35.0%
TATGCTAACGACATACCAAT+TGG + chr5.2:52172652-52172671 MS.gene062785:intron 35.0%
TATTATCAGGTTCCTTCTCT+CGG + chr5.2:52173899-52173918 MS.gene062785:intron 35.0%
TCCAAAACAAAACCTCTTCA+AGG + chr5.2:52171764-52171783 MS.gene062785:CDS 35.0%
TCTTCAAAAGAGAGAAGTTC+AGG + chr5.2:52175398-52175417 MS.gene062785:CDS 35.0%
TGCAATTAGGCATCAGAAAT+AGG - chr5.2:52175146-52175165 None:intergenic 35.0%
TGTGTCTATAAGTGCATGTT+TGG - chr5.2:52175653-52175672 None:intergenic 35.0%
TTAGGAGCTATGAATGTTGT+TGG + chr5.2:52173777-52173796 MS.gene062785:CDS 35.0%
TTCTTCCCCAACTAAGTATA+GGG - chr5.2:52171890-52171909 None:intergenic 35.0%
TTGGATGTTGGATTGAGATT+TGG + chr5.2:52172198-52172217 MS.gene062785:intron 35.0%
! AAAGAAAGCATACTCCATGA+TGG - chr5.2:52172860-52172879 None:intergenic 35.0%
! AAGAAAGCATACTCCATGAT+GGG - chr5.2:52172859-52172878 None:intergenic 35.0%
! ACTGTTTTCATGAGCTATCT+TGG - chr5.2:52173348-52173367 None:intergenic 35.0%
! AGTTTGGTAGCACATGTATA+GGG - chr5.2:52172630-52172649 None:intergenic 35.0%
! ATTTGACTTTGTTGCTTGCA+TGG + chr5.2:52174119-52174138 MS.gene062785:CDS 35.0%
! CATGTCTAGAACTAGACATT+AGG - chr5.2:52174829-52174848 None:intergenic 35.0%
! CTGTGTTTTTCTTTGGATGT+TGG + chr5.2:52172186-52172205 MS.gene062785:intron 35.0%
! GTTTTTGCTTCAGTTGAGAT+AGG + chr5.2:52174159-52174178 MS.gene062785:CDS 35.0%
! TATTTCTGATGCCTAATTGC+AGG + chr5.2:52175145-52175164 MS.gene062785:intron 35.0%
! TCCCAGAATTAACTTTTGGA+GGG - chr5.2:52171919-52171938 None:intergenic 35.0%
! TGTAATGGAATTCCTTGAAG+AGG - chr5.2:52171779-52171798 None:intergenic 35.0%
! TTCCCAGAATTAACTTTTGG+AGG - chr5.2:52171920-52171939 None:intergenic 35.0%
! TTGGTTCATCCTGCAATTTT+TGG - chr5.2:52175044-52175063 None:intergenic 35.0%
! TTGTGAACTTTTGAATCCCA+AGG - chr5.2:52172791-52172810 None:intergenic 35.0%
! TTTGACTTTGTTGCTTGCAT+GGG + chr5.2:52174120-52174139 MS.gene062785:CDS 35.0%
! TTTGTCTGATCTTTGAAAGG+AGG - chr5.2:52171831-52171850 None:intergenic 35.0%
!! ACAAGGCAGCAATTTTGATA+TGG + chr5.2:52174085-52174104 MS.gene062785:CDS 35.0%
!!! CATGTTTTGATTGATACCAG+TGG + chr5.2:52175459-52175478 MS.gene062785:intron 35.0%
!!! TCCTTGAAGAGGTTTTGTTT+TGG - chr5.2:52171768-52171787 None:intergenic 35.0%
!!! TTCATGCATGTTTTGATTCG+CGG + chr5.2:52175567-52175586 MS.gene062785:intron 35.0%
!!! TTGAAGAGGTTTTGTTTTGG+AGG - chr5.2:52171765-52171784 None:intergenic 35.0%
AAACATGCATGAAGATGGGT+TGG - chr5.2:52175560-52175579 None:intergenic 40.0%
AACAGCTTAAGGGTTTCCTT+GGG + chr5.2:52172772-52172791 MS.gene062785:CDS 40.0%
ACCATATGACCAAACTCGTT+AGG - chr5.2:52174928-52174947 None:intergenic 40.0%
ACCTAACGAGTTTGGTCATA+TGG + chr5.2:52174924-52174943 MS.gene062785:intron 40.0%
AGCAAGTCTTCATACTCAGT+TGG - chr5.2:52172380-52172399 None:intergenic 40.0%
ATTGAGGCCAGAATTGCATT+TGG - chr5.2:52174033-52174052 None:intergenic 40.0%
ATTGGGTGGATATTTCAACC+AGG + chr5.2:52172670-52172689 MS.gene062785:intron 40.0%
CAGGATATTAAGATGGCTGA+TGG + chr5.2:52175164-52175183 MS.gene062785:intron 40.0%
CAGTCATTATCGAGTCATCT+AGG + chr5.2:52174796-52174815 MS.gene062785:intron 40.0%
CATGAATCAATACATGCCAC+TGG - chr5.2:52175478-52175497 None:intergenic 40.0%
CTAGATGACTCGATAATGAC+TGG - chr5.2:52174798-52174817 None:intergenic 40.0%
CTGCAATAGTCGGATTTATG+GGG + chr5.2:52172724-52172743 MS.gene062785:CDS 40.0%
CTGTTGAAGAGCTATTGTGA+TGG - chr5.2:52172757-52172776 None:intergenic 40.0%
GACAGCACAAATGATGATTG+AGG - chr5.2:52174049-52174068 None:intergenic 40.0%
GATAAATCCTTCCTCTGTGA+AGG + chr5.2:52173515-52173534 MS.gene062785:CDS 40.0%
GATATCAATGGAGCAATTGC+TGG - chr5.2:52173133-52173152 None:intergenic 40.0%
GCTGCAATAGTCGGATTTAT+GGG + chr5.2:52172723-52172742 MS.gene062785:CDS 40.0%
GGTTGAAATATCCACCCAAT+TGG - chr5.2:52172670-52172689 None:intergenic 40.0%
GTCATACACAGTCAATACTG+CGG - chr5.2:52172137-52172156 None:intergenic 40.0%
GTGAACATAGCAGAACATAC+TGG + chr5.2:52173241-52173260 MS.gene062785:intron 40.0%
GTGGATATTTCAACCAGGTT+AGG + chr5.2:52172675-52172694 MS.gene062785:intron 40.0%
GTTCTTCCCCAACTAAGTAT+AGG - chr5.2:52171891-52171910 None:intergenic 40.0%
TAAATAACTCTTCCAGGGCA+TGG - chr5.2:52175374-52175393 None:intergenic 40.0%
TATCAGGAAGCCATAGCAAT+TGG + chr5.2:52173696-52173715 MS.gene062785:intron 40.0%
TCAGCAGTAAATTTCATGGC+TGG + chr5.2:52173922-52173941 MS.gene062785:CDS 40.0%
TCGGTCAGCAGTAAATTTCA+TGG + chr5.2:52173918-52173937 MS.gene062785:CDS 40.0%
TGAAATGTAACCACCAGTGT+CGG + chr5.2:52172550-52172569 MS.gene062785:intron 40.0%
TGAGTTTGGCAGAATCTTAG+TGG + chr5.2:52175590-52175609 MS.gene062785:intron 40.0%
TGCAATAGTCGGATTTATGG+GGG + chr5.2:52172725-52172744 MS.gene062785:CDS 40.0%
TGGAGTTTGTCTATCACTAG+TGG - chr5.2:52175900-52175919 None:intergenic 40.0%
TTGGTCTGTAAACAGGACAT+TGG + chr5.2:52172086-52172105 MS.gene062785:intron 40.0%
! ATTTTGTTGCATGTTGTGGC+AGG + chr5.2:52174273-52174292 MS.gene062785:intron 40.0%
! CATCAACCTTGTTGACTACA+AGG + chr5.2:52174068-52174087 MS.gene062785:CDS 40.0%
! CTAGTGACTCCTGACATTTT+CGG - chr5.2:52174637-52174656 None:intergenic 40.0%
! GAGAGTACGACAGATATCAA+TGG - chr5.2:52173145-52173164 None:intergenic 40.0%
! GAGTTTGGTAGCACATGTAT+AGG - chr5.2:52172631-52172650 None:intergenic 40.0%
! TGCATGTTTGGAATCACTGT+GGG - chr5.2:52175641-52175660 None:intergenic 40.0%
! TTTCTGATTAAAGGCGCATC+AGG - chr5.2:52172585-52172604 None:intergenic 40.0%
! TTTGGAATATGCGGTGAGTT+TGG + chr5.2:52175499-52175518 MS.gene062785:intron 40.0%
ACTTCCTGCTATGTAGCAAC+TGG + chr5.2:52173807-52173826 MS.gene062785:CDS 45.0%
AGCAATATCCAGAAGCCACA+AGG + chr5.2:52174392-52174411 MS.gene062785:CDS 45.0%
AGGCGTTAGAATTGGCATTG+TGG + chr5.2:52173569-52173588 MS.gene062785:CDS 45.0%
ATGACGGCATAAATCAGTGG+TGG - chr5.2:52172263-52172282 None:intergenic 45.0%
ATGCGACGTGAATAGTGGTT+AGG + chr5.2:52174730-52174749 MS.gene062785:intron 45.0%
ATTTACTGCTGACCGAGAGA+AGG - chr5.2:52173914-52173933 None:intergenic 45.0%
CAACAGCTTAAGGGTTTCCT+TGG + chr5.2:52172771-52172790 MS.gene062785:CDS 45.0%
CAATTCTAACGCCTTTCGCA+AGG - chr5.2:52173563-52173582 None:intergenic 45.0%
CACATGACGGCATAAATCAG+TGG - chr5.2:52172266-52172285 None:intergenic 45.0%
CATACCTAAAAACGCCAACG+TGG - chr5.2:52172410-52172429 None:intergenic 45.0%
CGCTGCAATAGTCGGATTTA+TGG + chr5.2:52172722-52172741 MS.gene062785:CDS 45.0%
CTAACGACATACCAATTGGG+TGG + chr5.2:52172656-52172675 MS.gene062785:intron 45.0%
CTATCACACGCTGCAATAGT+CGG + chr5.2:52172714-52172733 MS.gene062785:CDS 45.0%
CTGGAACCCAAAAGAACTTC+TGG - chr5.2:52173114-52173133 None:intergenic 45.0%
CTTACCAGTTGCTACATAGC+AGG - chr5.2:52173814-52173833 None:intergenic 45.0%
GAACAAGCTGCTCAAGAAAG+AGG - chr5.2:52175863-52175882 None:intergenic 45.0%
GATCTTCCTAACTGTTGCAG+AGG + chr5.2:52175956-52175975 MS.gene062785:CDS 45.0%
GCAATAGTCGGATTTATGGG+GGG + chr5.2:52172726-52172745 MS.gene062785:CDS 45.0%
GCAATATCCAGAAGCCACAA+GGG + chr5.2:52174393-52174412 MS.gene062785:CDS 45.0%
GCTATGTTCACGATGAGAGA+AGG - chr5.2:52173232-52173251 None:intergenic 45.0%
GGAGTCACTAGTTATGCATG+AGG + chr5.2:52174646-52174665 MS.gene062785:intron 45.0%
GGATGAACCAAACGATGGTT+AGG + chr5.2:52175053-52175072 MS.gene062785:intron 45.0%
GTATTCTCATCAGCCCATCA+TGG + chr5.2:52172843-52172862 MS.gene062785:CDS 45.0%
GTTAGAATTGGCATTGTGGC+TGG + chr5.2:52173573-52173592 MS.gene062785:CDS 45.0%
GTTGTCGATCAGGGAAAGAA+GGG + chr5.2:52173088-52173107 MS.gene062785:intron 45.0%
TCGCATCACTGTCTAATGTG+AGG - chr5.2:52174716-52174735 None:intergenic 45.0%
TCTTCCCCAGAATAGCAGTT+CGG - chr5.2:52174342-52174361 None:intergenic 45.0%
TGAGTTTGGCAGAATCACAG+TGG + chr5.2:52175513-52175532 MS.gene062785:intron 45.0%
TGTTGTCGATCAGGGAAAGA+AGG + chr5.2:52173087-52173106 MS.gene062785:intron 45.0%
TTGCAGGATGAACCAAACGA+TGG + chr5.2:52175048-52175067 MS.gene062785:intron 45.0%
TTGCTGCCTTGTAGTCAACA+AGG - chr5.2:52174077-52174096 None:intergenic 45.0%
TTGGCAGAATCTTAGTGGCT+TGG + chr5.2:52175595-52175614 MS.gene062785:intron 45.0%
TTGTGGCTTCTGGATATTGC+TGG - chr5.2:52174393-52174412 None:intergenic 45.0%
TTTGTCTTCTTCACAAGGCC+AGG + chr5.2:52171713-52171732 MS.gene062785:CDS 45.0%
! AATCTTAGTGGCTTGGCTCA+CGG + chr5.2:52175602-52175621 MS.gene062785:intron 45.0%
! AGAAGGGCCAGAAGTTCTTT+TGG + chr5.2:52173104-52173123 MS.gene062785:CDS 45.0%
! CTTTCTTGAGCAGCTTGTTC+TGG + chr5.2:52175863-52175882 MS.gene062785:intron 45.0%
! GAAGGGCCAGAAGTTCTTTT+GGG + chr5.2:52173105-52173124 MS.gene062785:CDS 45.0%
! GTGCATGTTTGGAATCACTG+TGG - chr5.2:52175642-52175661 None:intergenic 45.0%
! TGTTTGGAATCACTGTGGGT+TGG - chr5.2:52175637-52175656 None:intergenic 45.0%
! TTGTCTATCACTAGTGGACC+AGG - chr5.2:52175894-52175913 None:intergenic 45.0%
!! ACTTGCTTTTACTGCCACGT+TGG + chr5.2:52172393-52172412 MS.gene062785:intron 45.0%
!! CTTGCGAAAGGCGTTAGAAT+TGG + chr5.2:52173561-52173580 MS.gene062785:CDS 45.0%
!!! CTTGCATGGGAGCATTTTTC+GGG + chr5.2:52174133-52174152 MS.gene062785:CDS 45.0%
!!! GCTTGCATGGGAGCATTTTT+CGG + chr5.2:52174132-52174151 MS.gene062785:CDS 45.0%
!!! GTTTTGATTCGCGGTGAGTT+TGG + chr5.2:52175576-52175595 MS.gene062785:intron 45.0%
!!! TTGCATGGGAGCATTTTTCG+GGG + chr5.2:52174134-52174153 MS.gene062785:CDS 45.0%
AACACCATGCTTGTCTGCAC+GGG - chr5.2:52173188-52173207 None:intergenic 50.0%
ACCGGTGATTACCTTGCGAA+AGG + chr5.2:52173549-52173568 MS.gene062785:CDS 50.0%
ACTCCAACCTTGTGCGTGTA+TGG - chr5.2:52171741-52171760 None:intergenic 50.0%
ATAACCCGTGCAGACAAGCA+TGG + chr5.2:52173181-52173200 MS.gene062785:CDS 50.0%
CAACACCATGCTTGTCTGCA+CGG - chr5.2:52173189-52173208 None:intergenic 50.0%
CAACAGCCTCTGCAACAGTT+AGG - chr5.2:52175965-52175984 None:intergenic 50.0%
CAGTGATGCGACGTGAATAG+TGG + chr5.2:52174725-52174744 MS.gene062785:intron 50.0%
CCCCAACAAGAGAGAAACCA+CGG - chr5.2:52172321-52172340 None:intergenic 50.0%
CCGTGGTTTCTCTCTTGTTG+GGG + chr5.2:52172318-52172337 MS.gene062785:CDS 50.0%
CGACTATTGCAGCGTGTGAT+AGG - chr5.2:52172716-52172735 None:intergenic 50.0%
CTTCCCCAGAATAGCAGTTC+GGG - chr5.2:52174341-52174360 None:intergenic 50.0%
GAACCATACACGCACAAGGT+TGG + chr5.2:52171735-52171754 MS.gene062785:CDS 50.0%
GCCGTGGTTTCTCTCTTGTT+GGG + chr5.2:52172317-52172336 MS.gene062785:CDS 50.0%
GCCTTTCGCAAGGTAATCAC+CGG - chr5.2:52173553-52173572 None:intergenic 50.0%
TTCCCCAGAATAGCAGTTCG+GGG - chr5.2:52174340-52174359 None:intergenic 50.0%
TTGGCAGAATCACAGTGGCT+TGG + chr5.2:52175518-52175537 MS.gene062785:intron 50.0%
! ACTGCCACGTTGGCGTTTTT+AGG + chr5.2:52172403-52172422 MS.gene062785:intron 50.0%
! CAAGGGTCTTCAGCTAGCTT+TGG - chr5.2:52175999-52176018 None:intergenic 50.0%
! CAGCTTGTTCTGGCAAATCC+TGG + chr5.2:52175873-52175892 MS.gene062785:intron 50.0%
! CTATTCTGGGGAAGATCCCT+AGG + chr5.2:52174347-52174366 MS.gene062785:CDS 50.0%
! GGGGCCTTGTGACTTGTAAT+AGG - chr5.2:52174321-52174340 None:intergenic 50.0%
!! TAACCACCAGTGTCGGTGTT+AGG + chr5.2:52172557-52172576 MS.gene062785:intron 50.0%
AAGGCCCCGAACTGCTATTC+TGG + chr5.2:52174333-52174352 MS.gene062785:CDS 55.0%
AGGCCCCGAACTGCTATTCT+GGG + chr5.2:52174334-52174353 MS.gene062785:CDS 55.0%
AGTTCCCGCGACATTGCGAT+AGG + chr5.2:52172287-52172306 MS.gene062785:CDS 55.0%
CAATACACCGGGAACCCTTG+TGG - chr5.2:52174410-52174429 None:intergenic 55.0%
CCAGGAACCATACACGCACA+AGG + chr5.2:52171731-52171750 MS.gene062785:CDS 55.0%
CCTTGTGCGTGTATGGTTCC+TGG - chr5.2:52171734-52171753 None:intergenic 55.0%
CGACATTGCGATAGGGACAG+TGG + chr5.2:52172295-52172314 MS.gene062785:CDS 55.0%
CTGTCCCTATCGCAATGTCG+CGG - chr5.2:52172295-52172314 None:intergenic 55.0%
GGCCGTGGTTTCTCTCTTGT+TGG + chr5.2:52172316-52172335 MS.gene062785:CDS 55.0%
GGGTTGGACGAAATCGCGAT+GGG - chr5.2:52175544-52175563 None:intergenic 55.0%
GTCGCGGGAACTACACATGA+CGG - chr5.2:52172279-52172298 None:intergenic 55.0%
GTTCCCGCGACATTGCGATA+GGG + chr5.2:52172288-52172307 MS.gene062785:CDS 55.0%
TGCAAGTCTCTGCATTCCCC+AGG + chr5.2:52171977-52171996 MS.gene062785:CDS 55.0%
TGTCCCTATCGCAATGTCGC+GGG - chr5.2:52172294-52172313 None:intergenic 55.0%
! TGGGTTGGACGAAATCGCGA+TGG - chr5.2:52175545-52175564 None:intergenic 55.0%
CAGGTGCCTAACACCGACAC+TGG - chr5.2:52172566-52172585 None:intergenic 60.0%
CCAGAAGCCACAAGGGTTCC+CGG + chr5.2:52174400-52174419 MS.gene062785:CDS 60.0%
GGCCCCGAACTGCTATTCTG+GGG + chr5.2:52174335-52174354 MS.gene062785:CDS 60.0%
GTGCCTAACACCGACACTGG+TGG - chr5.2:52172563-52172582 None:intergenic 60.0%
TACCAGTGGCATCCATGCCC+TGG + chr5.2:52175359-52175378 MS.gene062785:CDS 60.0%
TTCCAGGGCATGGATGCCAC+TGG - chr5.2:52175364-52175383 None:intergenic 60.0%
! CATGGCTGGCTGCGAAACTG+CGG + chr5.2:52173936-52173955 MS.gene062785:CDS 60.0%
CCGGGAACCCTTGTGGCTTC+TGG - chr5.2:52174403-52174422 None:intergenic 65.0%
TGCGATAGGGACAGTGGCCG+TGG + chr5.2:52172301-52172320 MS.gene062785:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 52171699 52176019 52171699 ID=MS.gene062785
chr5.2 mRNA 52171699 52176019 52171699 ID=MS.gene062785.t1;Parent=MS.gene062785
chr5.2 exon 52171699 52171998 52171699 ID=MS.gene062785.t1.exon1;Parent=MS.gene062785.t1
chr5.2 CDS 52171699 52171998 52171699 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52172101 52172138 52172101 ID=MS.gene062785.t1.exon2;Parent=MS.gene062785.t1
chr5.2 CDS 52172101 52172138 52172101 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52172253 52172384 52172253 ID=MS.gene062785.t1.exon3;Parent=MS.gene062785.t1
chr5.2 CDS 52172253 52172384 52172253 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52172692 52172866 52172692 ID=MS.gene062785.t1.exon4;Parent=MS.gene062785.t1
chr5.2 CDS 52172692 52172866 52172692 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52173100 52173213 52173100 ID=MS.gene062785.t1.exon5;Parent=MS.gene062785.t1
chr5.2 CDS 52173100 52173213 52173100 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52173495 52173611 52173495 ID=MS.gene062785.t1.exon6;Parent=MS.gene062785.t1
chr5.2 CDS 52173495 52173611 52173495 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52173702 52173828 52173702 ID=MS.gene062785.t1.exon7;Parent=MS.gene062785.t1
chr5.2 CDS 52173702 52173828 52173702 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52173908 52174194 52173908 ID=MS.gene062785.t1.exon8;Parent=MS.gene062785.t1
chr5.2 CDS 52173908 52174194 52173908 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52174295 52174485 52174295 ID=MS.gene062785.t1.exon9;Parent=MS.gene062785.t1
chr5.2 CDS 52174295 52174485 52174295 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52175167 52175252 52175167 ID=MS.gene062785.t1.exon10;Parent=MS.gene062785.t1
chr5.2 CDS 52175167 52175252 52175167 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52175343 52175419 52175343 ID=MS.gene062785.t1.exon11;Parent=MS.gene062785.t1
chr5.2 CDS 52175343 52175419 52175343 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
chr5.2 exon 52175876 52176019 52175876 ID=MS.gene062785.t1.exon12;Parent=MS.gene062785.t1
chr5.2 CDS 52175876 52176019 52175876 ID=cds.MS.gene062785.t1;Parent=MS.gene062785.t1
Gene Sequence

>MS.gene062785

ATGGATAGCAGAAGTTTGTCTTCTTCACAAGGCCAGGAACCATACACGCACAAGGTTGGAGTTCCTCCAAAACAAAACCTCTTCAAGGAATTCCATTACACCGTAAGAGAAACATTCTTCTCGGACGATCCTCCTTTCAAAGATCAGACAAAGTCCCGTAAGTTAATTCTGGGAATTGAAGCCATATTCCCTATACTTAGTTGGGGAAGAACGTATACCCTCCAAAAGTTAATTCTGGGAATTGAAGCCATATTCCTTATTATTGCTGGTTTAACTATTGCAAGTCTCTGCATTCCCCAGGTAAATTTACTTTAGATTGTTTATTCTTTTAAAAATAAATTTGTATTTTTAATTGATTGCTTTCCCCTTTTTTATGTTTTGATATATTTGGTCTGTAAACAGGACATTGGATACTCAAAGCTTGCAAATTTGGCTCCGCAGTATTGACTGTGTATGACTCTTGTTTCTCATCACAAGCTCATGTTTTCTGTGTTTTTCTTTGGATGTTGGATTGAGATTTGGTTGTGTTTTGTTTTACCCTTTATAGATTCAAGCTTTGTTCCACCACTGATTTATGCCGTCATGTGTAGTTCCCGCGACATTGCGATAGGGACAGTGGCCGTGGTTTCTCTCTTGTTGGGGACTTTACTACAGAATGAGATTGATCCGAATACACATCCAACTGAGTATGAAGACTTGCTTTTACTGCCACGTTGGCGTTTTTAGGTATGACTCATTGATTTTAGGCGAGTTTATTTTTTAATTTTTCTAGCAATATTGTTCTACGAATCACTAACATAGACACGGACACCGAACACAACACTGTTAATAATTTGATAAAATGAAAGTGATGAAATGTAACCACCAGTGTCGGTGTTAGGCACCTGATGCGCCTTTAATCAGAAATGTTACATAGCTAGTGTTAATGCCCTATACATGTGCTACCAAACTCTTATGCTAACGACATACCAATTGGGTGGATATTTCAACCAGGTTAGGATTTTTGATTGATTTCCTATCACACGCTGCAATAGTCGGATTTATGGGGGGAGCTGCCATCACAATAGCTCTTCAACAGCTTAAGGGTTTCCTTGGGATTCAAAAGTTCACAAAGAAAACTGATATAATATCTGTGATGAATTCAGTATTCTCATCAGCCCATCATGGAGTATGCTTTCTTTTCTATACCTTCACACGAAAATCAATAATGAGATTCTAAGATATATGTATGTGTGTGTTGCAAATACTAAAACTGATTAATATCTAACATCTGGCAAACTATATTATTAATTGGATCTACCTTTCTTGCTTTTCTTCTGTTTGCCAAGTATATTGTAAGCACTCTTATTCATTTTCCTAAACCTTTCTTATTTTCTAATTATGTTATATGTTGTCGATCAGGGAAAGAAGGGCCAGAAGTTCTTTTGGGTTCCAGCAATTGCTCCATTGATATCTGTCGTACTCTCCACTTTGTTTGTATACATAACCCGTGCAGACAAGCATGGTGTTGCGATTGTAAGTATATATAATCCTTCTCTCATCGTGAACATAGCAGAACATACTGGCATAAACACTTGTGAGACTGTTTTGAGAGAGCTTATGAAAACAATTTATGTCCTGTTCATAAACTTCTTTTAGCTTGTGTTCCAAGATAGCTCATGAAAACAGTTTATAACTTTTATGAAAAGAGTTTGAATTTATTTGTCTTTTCTTATAAAACTAGCTCATATGTAATAAACGCTTAATTAAGCTGTTTATCGATAGTAGTGAATGTTTTTATCTATTGACGTGTGTAGGTAAAACACATAGAGAAAGGGATAAATCCTTCCTCTGTGAAGGAAATTTATTTTACCGGTGATTACCTTGCGAAAGGCGTTAGAATTGGCATTGTGGCTGGCATGATAGCTTTGACTGTAAGAAAACTGAGACTATTATCTTCACTCAAAGAGTATTTTACCGTTTTCTTGAGTTCTCATTATAACATGTTACATTTTGATTATCAGGAAGCCATAGCAATTGGAAGAACATTTGCTTCTATGAAAGACTATCAACTTGATGGAAACAAAGAAATGATGGCATTAGGAGCTATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAGCAACTGGTAAGATTGAGAAATTCGTTTAAGCGTGTTATAAACTAATCGTTTTATATTTGCTGATATACTGTCTTGCTATTATCAGGTTCCTTCTCTCGGTCAGCAGTAAATTTCATGGCTGGCTGCGAAACTGCGGTCTCTAATATTGTCATGTCTGTTGTTGTGTTCTTAACTCTGCAATTCATCACACCGCTTTTCAAATACACTCCAAATGCAATTCTGGCCTCAATCATCATTTGTGCTGTCATCAACCTTGTTGACTACAAGGCAGCAATTTTGATATGGAAAATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTCGGGGTCGTTTTTGCTTCAGTTGAGATAGGACTTTTGATTGCTGTAAGTACCAAAGACTCAGTTATCTTATTATGCTCTAAAATAATTTCAGTTTTAGTTTCTGATTGGTTACTAGTATTAATTTTGTTGCATGTTGTGGCAGGTTTCTATATCCTTTGCAAAGATCCTATTACAAGTCACAAGGCCCCGAACTGCTATTCTGGGGAAGATCCCTAGGACAACTGTTTATAGAAACATCCAGCAATATCCAGAAGCCACAAGGGTTCCCGGTGTATTGATTATAAGAGTTGATTCTGCAATATATTTTTCTAACTCCAATTATGTTAAAGAAAGGTAATAAATTATTCCCTTTCTGTTTGTAATTTTTTTTGATTGAATTGAAATGAATTAATACAATCTGTATAGTGGTCTAGGAAGCTGTATATCTTTTTTCGCAATCATATTAATAACTATGCTGTAAGGACAGAAGTTGTATATGGTTCCGAAAATGTCAGGAGTCACTAGTTATGCATGAGGATAACATCCAATAATCCGAAATATCTTATAATCAGTGTAGTGAGCCTCACATTAGACAGTGATGCGACGTGAATAGTGGTTAGGTTCAAACACAATTCCAATATAGTCTATCTTAAATTTATTGTGCCAGTCATTATCGAGTCATCTAGGTCACACTCCTAATGTCTAGTTCTAGACATGAAATAGGTGTTTTAAGAGTTTCACATTGGATAGTTGTATAGTTTGAATAGTGATTAATAGTTCGGGGAAACATTAACCTAACGAGTTTGGTCATATGGTTTAATAATAGTTAAAAGATGCATGCCATTTCCAATGAAATCTGATGGTAATAAGTGAAGGTTAGTCTAAAAACGAAAGAAACATGTTCAAAGACCAAAAATTGCAGGATGAACCAAACGATGGTTAGGATATCTAATCGAGTTACACATATATTATAAAATGATAATTTTTCCTTTCTTTTCGGCAATAATTAAACCTATTTCTGATGCCTAATTGCAGGATATTAAGATGGCTGATGGATGAAGAAGAACGAGTGAATAGAGACTACCAAACACGAATCCAATTTTTGATAGTTGAGATGTCACGTGAGTCTCTAACTTTCCTTTATGCTCAACTTAACTTGTCGCATAATTAAGAATATGCTTAACCTCAAATGTGTGTTTAATTTGTTGCAGCTGTTACTGATATTGATACCAGTGGCATCCATGCCCTGGAAGAGTTATTTAGAAGTCTTCAAAAGAGAGAAGTTCAGGTAATAAAAGATAAATAAAGAACATATTTTCATATAATGCATGTTTTGATTGATACCAGTGGCATGTATTGATTCATGTTTTGGAATATGCGGTGAGTTTGGCAGAATCACAGTGGCTTGGCCCATCGCGATTTCGTCCAACCCATCTTCATGCATGTTTTGATTCGCGGTGAGTTTGGCAGAATCTTAGTGGCTTGGCTCACGGTGATTTCGTCCAACCCACAGTGATTCCAAACATGCACTTATAGACACATTAATGTCATAAATTGTTTTCATAAGATCTCGCAAATAGTGTTACAATTGCTTATATCATTTTCCATAGATAAATTAAATTAATTCAATTCAAATTTAAAATGCCCTATATATATTTGTATGTTAACAAATTTCTAAACAATATAATATAATGTGACAATTATATATATATCTCAACTAAAAAGGTACCTCTTTCTTGAGCAGCTTGTTCTGGCAAATCCTGGTCCACTAGTGATAGACAAACTCCACACATCAAACTTTGCAAACTTTCTTGGTGAAGACAAGATCTTCCTAACTGTTGCAGAGGCTGTTGCATACTGTTCTCCAAAGCTAGCTGAAGACCCTTGA
Protein sequence

>MS.gene062785.t1

MDSRSLSSSQGQEPYTHKVGVPPKQNLFKEFHYTVRETFFSDDPPFKDQTKSRKLILGIEAIFPILSWGRTYTLQKLILGIEAIFLIIAGLTIASLCIPQDIGYSKLANLAPHFVPPLIYAVMCSSRDIAIGTVAVVSLLLGTLLQNEIDPNTHPTELGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKKTDIISVMNSVFSSAHHGGKKGQKFFWVPAIAPLISVVLSTLFVYITRADKHGVAIVKHIEKGINPSSVKEIYFTGDYLAKGVRIGIVAGMIALTEAIAIGRTFASMKDYQLDGNKEMMALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIVMSVVVFLTLQFITPLFKYTPNAILASIIICAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATRVPGVLIIRVDSAIYFSNSNYVKERILRWLMDEEERVNRDYQTRIQFLIVEMSPVTDIDTSGIHALEELFRSLQKREVQLVLANPGPLVIDKLHTSNFANFLGEDKIFLTVAEAVAYCSPKLAEDP