AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062784

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062784.t1 MTR_5g061880 87.687 601 15 5 1 548 14 608 0.0 1032
MS.gene062784.t1 MTR_3g073780 75.954 603 83 7 1 548 17 612 0.0 867
MS.gene062784.t1 MTR_3g073780 75.563 577 79 7 1 522 17 586 0.0 822
MS.gene062784.t1 MTR_3g073780 75.410 549 74 6 1 494 17 559 0.0 781
MS.gene062784.t1 MTR_2g008470 63.953 602 153 8 4 548 18 612 0.0 741
MS.gene062784.t1 MTR_2g008470 63.953 602 153 8 4 548 37 631 0.0 741
MS.gene062784.t1 MTR_1g071530 50.342 584 232 5 17 548 21 598 0.0 579
MS.gene062784.t1 MTR_7g095430 48.288 584 244 5 17 548 18 595 0.0 566
MS.gene062784.t1 MTR_2g102243 48.973 584 240 5 17 548 23 600 0.0 561
MS.gene062784.t1 MTR_4g084620 47.255 601 256 7 1 548 1 593 0.0 552
MS.gene062784.t1 MTR_3g087740 50.717 558 212 8 46 548 62 611 0.0 548
MS.gene062784.t1 MTR_5g061860 48.387 589 232 8 22 548 29 607 0.0 545
MS.gene062784.t1 MTR_7g095430 48.566 558 229 5 17 522 18 569 0.0 543
MS.gene062784.t1 MTR_4g011970 47.260 584 250 5 17 548 30 607 0.0 535
MS.gene062784.t1 MTR_2g102243 48.746 558 228 5 17 522 23 574 0.0 535
MS.gene062784.t1 MTR_3g073730 49.464 560 219 7 47 548 60 613 0.0 533
MS.gene062784.t1 MTR_4g084640 47.774 584 239 7 17 545 22 594 0.0 530
MS.gene062784.t1 MTR_5g061860 49.533 535 200 7 22 494 28 554 1.10e-174 505
MS.gene062784.t1 MTR_6g086170 39.831 590 292 6 12 548 5 584 1.85e-154 456
MS.gene062784.t1 MTR_3g087730 37.413 572 283 12 34 542 49 608 5.27e-127 386
MS.gene062784.t1 MTR_7g022870 34.720 553 299 11 46 548 57 597 3.72e-99 315
MS.gene062784.t1 MTR_7g022870 34.345 527 284 11 46 522 57 571 1.47e-90 289
MS.gene062784.t1 MTR_6g024420 46.491 114 47 2 191 304 67 166 1.23e-25 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062784.t1 AT1G22150 70.924 595 114 6 7 548 21 609 0.0 799
MS.gene062784.t1 AT1G22150 70.924 595 114 6 7 548 21 609 0.0 799
MS.gene062784.t1 AT1G22150 70.924 595 114 6 7 548 21 609 0.0 799
MS.gene062784.t1 AT1G78000 70.289 589 116 6 13 548 24 606 0.0 782
MS.gene062784.t1 AT1G78000 70.289 589 116 6 13 548 24 606 0.0 781
MS.gene062784.t1 AT1G78000 70.289 589 116 6 13 548 24 606 0.0 781
MS.gene062784.t1 AT1G78000 70.289 589 116 6 13 548 24 606 0.0 781
MS.gene062784.t1 AT1G22150 70.475 569 109 6 7 522 21 583 0.0 751
MS.gene062784.t1 AT1G78000 69.805 563 111 6 13 522 24 580 0.0 733
MS.gene062784.t1 AT4G08620 64.444 585 149 5 17 548 23 601 0.0 728
MS.gene062784.t1 AT1G78000 73.258 445 74 3 123 522 1 445 0.0 598
MS.gene062784.t1 AT3G51895 47.927 603 253 6 1 548 46 642 0.0 585
MS.gene062784.t1 AT3G51895 47.927 603 253 6 1 548 1 597 0.0 584
MS.gene062784.t1 AT1G78000 67.155 478 98 6 13 437 24 495 0.0 584
MS.gene062784.t1 AT3G15990 47.260 584 250 5 17 548 27 604 0.0 556
MS.gene062784.t1 AT1G23090 46.918 584 252 5 17 548 4 581 0.0 534
MS.gene062784.t1 AT5G10180 48.510 604 245 9 5 548 37 634 0.0 527
MS.gene062784.t1 AT1G77990 48.257 545 221 6 59 548 89 627 1.79e-172 504
MS.gene062784.t1 AT4G02700 44.781 594 268 7 8 548 2 588 2.44e-172 502
MS.gene062784.t1 AT5G19600 40.268 596 284 9 8 548 6 584 3.17e-147 437
MS.gene062784.t1 AT1G23090 50.605 413 183 1 157 548 37 449 5.91e-146 429
MS.gene062784.t1 AT1G23090 50.605 413 183 1 157 548 37 449 5.91e-146 429
MS.gene062784.t1 AT1G23090 50.605 413 183 1 157 548 37 449 5.91e-146 429
MS.gene062784.t1 AT5G13550 34.336 565 294 11 45 548 55 603 4.69e-101 320
MS.gene062784.t1 AT3G12520 32.712 590 317 12 9 548 31 590 2.58e-98 312
MS.gene062784.t1 AT3G12520 32.712 590 317 12 9 548 15 574 3.12e-98 312
MS.gene062784.t1 AT3G12520 32.397 534 284 10 9 494 31 535 9.49e-87 278

Find 135 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTCAAAGCTTGCAAATT+TGG 0.134167 5.2:+52012718 MS.gene062784:CDS
TTACCTTTCTTTAACATAAT+TGG 0.142103 5.2:-52015076 None:intergenic
CGCTGCAATAGTCGGATTTA+TGG 0.166264 5.2:+52013331 MS.gene062784:CDS
CCGGGAACCCTTGTGGCTTC+TGG 0.244498 5.2:-52015009 None:intergenic
TACCCTCCAAAAGTTAATTC+TGG 0.255929 5.2:+52012523 MS.gene062784:CDS
CAATTCCCAGAATTAACTTT+TGG 0.286399 5.2:-52012529 None:intergenic
AGAAGGGCCAGAAGTTCTTT+TGG 0.294844 5.2:+52013713 MS.gene062784:CDS
GCCATATTCCTTATTATTGC+TGG 0.296925 5.2:+52012554 MS.gene062784:CDS
CCAACTAAGTATAGGGAATA+TGG 0.299920 5.2:-52012489 None:intergenic
AATAGCTCTTCAACAGCTTA+AGG 0.302422 5.2:+52013370 MS.gene062784:CDS
AAGGCCCCGAACTGCTATTC+TGG 0.303809 5.2:+52014942 MS.gene062784:CDS
GGCCGTGGTTTCTCTCTTGT+TGG 0.307403 5.2:+52012925 MS.gene062784:CDS
ACCAGCAATAATAAGGAATA+TGG 0.308116 5.2:-52012555 None:intergenic
ATACACTCCAAATGCAATTC+TGG 0.309038 5.2:+52014632 MS.gene062784:CDS
TACTCAGTTGGATGTGTATT+CGG 0.309165 5.2:-52012974 None:intergenic
GCCGTGGTTTCTCTCTTGTT+GGG 0.313630 5.2:+52012926 MS.gene062784:CDS
CATATTCCCTATACTTAGTT+GGG 0.322705 5.2:+52012490 MS.gene062784:CDS
CTGGAACCCAAAAGAACTTC+TGG 0.328476 5.2:-52013720 None:intergenic
CCTTGTGCGTGTATGGTTCC+TGG 0.330002 5.2:-52012340 None:intergenic
AAAGTCCCGTAAGTTAATTC+TGG 0.338679 5.2:+52012457 MS.gene062784:CDS
GACTTCTAAATAACTCTTCC+AGG 0.340225 5.2:-52015986 None:intergenic
TTGTGGCTTCTGGATATTGC+TGG 0.340906 5.2:-52014999 None:intergenic
TAGTTAAACCAGCAATAATA+AGG 0.352013 5.2:-52012562 None:intergenic
ATGAAAGACTATCAACTTGA+TGG 0.352997 5.2:+52014344 MS.gene062784:CDS
TTCTTCCCCAACTAAGTATA+GGG 0.354633 5.2:-52012496 None:intergenic
CTTCCCCAGAATAGCAGTTC+GGG 0.364574 5.2:-52014947 None:intergenic
CCAGAAGCCACAAGGGTTCC+CGG 0.366444 5.2:+52015009 MS.gene062784:CDS
TCTTCAAAAGAGAGAAGTTC+AGG 0.372341 5.2:+52016007 MS.gene062784:CDS
CTTGCGAAAGGCGTTAGAAT+TGG 0.374842 5.2:+52014170 MS.gene062784:CDS
GCTGCAATAGTCGGATTTAT+GGG 0.384000 5.2:+52013332 MS.gene062784:CDS
CGACTATTGCAGCGTGTGAT+AGG 0.387151 5.2:-52013322 None:intergenic
ATAGCTCTTCAACAGCTTAA+GGG 0.388577 5.2:+52013371 MS.gene062784:CDS
GGGGCCTTGTGACTTGTAAT+AGG 0.389141 5.2:-52014927 None:intergenic
CAACAGCTTAAGGGTTTCCT+TGG 0.394046 5.2:+52013380 MS.gene062784:CDS
CCATATTCCCTATACTTAGT+TGG 0.401021 5.2:+52012489 MS.gene062784:CDS
ATTGAGGCCAGAATTGCATT+TGG 0.401265 5.2:-52014639 None:intergenic
TCCAAAACAAAACCTCTTCA+AGG 0.403824 5.2:+52012373 MS.gene062784:CDS
TTTCTATAAACAGTTGTCCT+AGG 0.415898 5.2:-52014973 None:intergenic
GATATCAATGGAGCAATTGC+TGG 0.416195 5.2:-52013739 None:intergenic
GTTCTTCCCCAACTAAGTAT+AGG 0.426410 5.2:-52012497 None:intergenic
CAATTCCCAGAATTAACTTA+CGG 0.430079 5.2:-52012463 None:intergenic
ACTCCAACCTTGTGCGTGTA+TGG 0.432344 5.2:-52012347 None:intergenic
AACAAAGAAATGATGGCATT+AGG 0.432536 5.2:+52014368 MS.gene062784:CDS
AATTCCCAGAATTAACTTAC+GGG 0.433403 5.2:-52012462 None:intergenic
TATCAGGAAGCCATAGCAAT+TGG 0.433820 5.2:+52014305 MS.gene062784:intron
ACCCTCCAAAAGTTAATTCT+GGG 0.438852 5.2:+52012524 MS.gene062784:CDS
AGGCCCCGAACTGCTATTCT+GGG 0.438860 5.2:+52014943 MS.gene062784:CDS
ATGTTTCTCTTACGGTGTAA+TGG 0.443028 5.2:-52012400 None:intergenic
TCGGTCAGCAGTAAATTTCA+TGG 0.451275 5.2:+52014527 MS.gene062784:CDS
CGAGAAGAATGTTTCTCTTA+CGG 0.455600 5.2:-52012408 None:intergenic
GTTAGAATTGGCATTGTGGC+TGG 0.459682 5.2:+52014182 MS.gene062784:CDS
TAAATTTCCTTCACAGAGGA+AGG 0.466479 5.2:-52014131 None:intergenic
TTAGGAGCTATGAATGTTGT+TGG 0.466708 5.2:+52014386 MS.gene062784:CDS
CGTAAGAGAAACATTCTTCT+CGG 0.469662 5.2:+52012409 MS.gene062784:CDS
AAGTCCCGTAAGTTAATTCT+GGG 0.470217 5.2:+52012458 MS.gene062784:CDS
TGCGATAGGGACAGTGGCCG+TGG 0.470235 5.2:+52012910 MS.gene062784:CDS
TAGGTAAAACACATAGAGAA+AGG 0.474007 5.2:+52014101 MS.gene062784:intron
TTTGTCTTCTTCACAAGGCC+AGG 0.474993 5.2:+52012322 MS.gene062784:CDS
AAATGTTCTTCCAATTGCTA+TGG 0.475056 5.2:-52014315 None:intergenic
AACAGCTTAAGGGTTTCCTT+GGG 0.476924 5.2:+52013381 MS.gene062784:CDS
ACTTCCTGCTATGTAGCAAC+TGG 0.480021 5.2:+52014416 MS.gene062784:CDS
TCTTCCCCAGAATAGCAGTT+CGG 0.480188 5.2:-52014948 None:intergenic
CCGTGGTTTCTCTCTTGTTG+GGG 0.482794 5.2:+52012927 MS.gene062784:CDS
TATTATCAGGTTCCTTCTCT+CGG 0.490063 5.2:+52014508 MS.gene062784:intron
TGATGGAAACAAAGAAATGA+TGG 0.492078 5.2:+52014361 MS.gene062784:CDS
GACTTTGTCTGATCTTTGAA+AGG 0.507294 5.2:-52012440 None:intergenic
TACCAGTGGCATCCATGCCC+TGG 0.511166 5.2:+52015968 MS.gene062784:CDS
ACTCCAATTATGTTAAAGAA+AGG 0.512105 5.2:+52015073 MS.gene062784:CDS
CTATTCTGGGGAAGATCCCT+AGG 0.514412 5.2:+52014956 MS.gene062784:CDS
AAAGAAAGCATACTCCATGA+TGG 0.514535 5.2:-52013466 None:intergenic
CATCAACCTTGTTGACTACA+AGG 0.515925 5.2:+52014677 MS.gene062784:CDS
TAAATAACTCTTCCAGGGCA+TGG 0.517398 5.2:-52015980 None:intergenic
TGTTGTCGATCAGGGAAAGA+AGG 0.517938 5.2:+52013696 MS.gene062784:intron
AACTCTTATAATCAATACAC+CGG 0.520076 5.2:-52015028 None:intergenic
ATTTGACTTTGTTGCTTGCA+TGG 0.523266 5.2:+52014728 MS.gene062784:CDS
TTTGACTTTGTTGCTTGCAT+GGG 0.525969 5.2:+52014729 MS.gene062784:CDS
TTCTATAAACAGTTGTCCTA+GGG 0.528944 5.2:-52014972 None:intergenic
AACACCATGCTTGTCTGCAC+GGG 0.536403 5.2:-52013794 None:intergenic
CAACACCATGCTTGTCTGCA+CGG 0.537870 5.2:-52013795 None:intergenic
AGCAAGTCTTCATACTCAGT+TGG 0.538042 5.2:-52012986 None:intergenic
CTTACCAGTTGCTACATAGC+AGG 0.540351 5.2:-52014420 None:intergenic
ACCGGTGATTACCTTGCGAA+AGG 0.542435 5.2:+52014158 MS.gene062784:CDS
CTAATTGCAGGATATTAAGA+TGG 0.551261 5.2:+52015766 MS.gene062784:intron
AGCAATATCCAGAAGCCACA+AGG 0.552472 5.2:+52015001 MS.gene062784:CDS
TCAGCAGTAAATTTCATGGC+TGG 0.553871 5.2:+52014531 MS.gene062784:CDS
TTGGTCTGTAAACAGGACAT+TGG 0.557141 5.2:+52012695 MS.gene062784:intron
TGCAAGTCTCTGCATTCCCC+AGG 0.559253 5.2:+52012586 MS.gene062784:CDS
TGTCCCTATCGCAATGTCGC+GGG 0.559527 5.2:-52012900 None:intergenic
TTTGTCTGATCTTTGAAAGG+AGG 0.561020 5.2:-52012437 None:intergenic
GATAAATCCTTCCTCTGTGA+AGG 0.562675 5.2:+52014124 MS.gene062784:CDS
CTATCACACGCTGCAATAGT+CGG 0.562859 5.2:+52013323 MS.gene062784:CDS
CAGGATATTAAGATGGCTGA+TGG 0.564002 5.2:+52015773 MS.gene062784:intron
GAACCATACACGCACAAGGT+TGG 0.567049 5.2:+52012344 MS.gene062784:CDS
AGGTAAAACACATAGAGAAA+GGG 0.567158 5.2:+52014102 MS.gene062784:intron
TTCCAGGGCATGGATGCCAC+TGG 0.573861 5.2:-52015970 None:intergenic
GTATTCTCATCAGCCCATCA+TGG 0.578077 5.2:+52013452 MS.gene062784:CDS
CTGCAATAGTCGGATTTATG+GGG 0.578121 5.2:+52013333 MS.gene062784:CDS
CAATTCTAACGCCTTTCGCA+AGG 0.578178 5.2:-52014169 None:intergenic
AAGAAAGCATACTCCATGAT+GGG 0.579121 5.2:-52013465 None:intergenic
AGAAGTTTGTCTTCTTCACA+AGG 0.581983 5.2:+52012317 MS.gene062784:CDS
AGTTCCCGCGACATTGCGAT+AGG 0.583400 5.2:+52012896 MS.gene062784:CDS
TTGTAATAGGATCTTTGCAA+AGG 0.587197 5.2:-52014914 None:intergenic
GAGAGTACGACAGATATCAA+TGG 0.588423 5.2:-52013751 None:intergenic
GTTGTCGATCAGGGAAAGAA+GGG 0.590642 5.2:+52013697 MS.gene062784:intron
TGTAATGGAATTCCTTGAAG+AGG 0.591832 5.2:-52012385 None:intergenic
GCCTTTCGCAAGGTAATCAC+CGG 0.593120 5.2:-52014159 None:intergenic
CTGTCCCTATCGCAATGTCG+CGG 0.603245 5.2:-52012901 None:intergenic
TGCAATAGTCGGATTTATGG+GGG 0.606663 5.2:+52013334 MS.gene062784:CDS
ATATTCCCTATACTTAGTTG+GGG 0.608360 5.2:+52012491 MS.gene062784:CDS
CAATACACCGGGAACCCTTG+TGG 0.612119 5.2:-52015016 None:intergenic
CATGGCTGGCTGCGAAACTG+CGG 0.618353 5.2:+52014545 MS.gene062784:CDS
ACTTCTAAATAACTCTTCCA+GGG 0.621237 5.2:-52015985 None:intergenic
ATTTACTGCTGACCGAGAGA+AGG 0.621565 5.2:-52014520 None:intergenic
GTTCCCGCGACATTGCGATA+GGG 0.626929 5.2:+52012897 MS.gene062784:CDS
AGGCGTTAGAATTGGCATTG+TGG 0.630919 5.2:+52014178 MS.gene062784:CDS
TTGCTGCCTTGTAGTCAACA+AGG 0.634329 5.2:-52014683 None:intergenic
GTTACTGATATTGATACCAG+TGG 0.647299 5.2:+52015954 MS.gene062784:CDS
CCAGGAACCATACACGCACA+AGG 0.650752 5.2:+52012340 MS.gene062784:CDS
CCCCAACAAGAGAGAAACCA+CGG 0.650873 5.2:-52012927 None:intergenic
GACAGCACAAATGATGATTG+AGG 0.651653 5.2:-52014655 None:intergenic
GGTTATGTATACAAACAAAG+TGG 0.654086 5.2:-52013773 None:intergenic
ATGACGGCATAAATCAGTGG+TGG 0.660901 5.2:-52012869 None:intergenic
GCAATATCCAGAAGCCACAA+GGG 0.661125 5.2:+52015002 MS.gene062784:CDS
TTCCCCAGAATAGCAGTTCG+GGG 0.661856 5.2:-52014946 None:intergenic
GTCGCGGGAACTACACATGA+CGG 0.663134 5.2:-52012885 None:intergenic
CACATGACGGCATAAATCAG+TGG 0.672226 5.2:-52012872 None:intergenic
ACTCTTATAATCAATACACC+GGG 0.673544 5.2:-52015027 None:intergenic
TTTGGAGTGTATTTGAAAAG+CGG 0.675812 5.2:-52014621 None:intergenic
GGCCCCGAACTGCTATTCTG+GGG 0.677105 5.2:+52014944 MS.gene062784:CDS
CGACATTGCGATAGGGACAG+TGG 0.677278 5.2:+52012904 MS.gene062784:CDS
AAAATAAATTTCCTTCACAG+AGG 0.679400 5.2:-52014135 None:intergenic
AGATCCTATTACAAGTCACA+AGG 0.684935 5.2:+52014923 MS.gene062784:CDS
ATAACCCGTGCAGACAAGCA+TGG 0.686605 5.2:+52013790 MS.gene062784:CDS
GCAATAGTCGGATTTATGGG+GGG 0.696030 5.2:+52013335 MS.gene062784:CDS
CTGTTGAAGAGCTATTGTGA+TGG 0.722345 5.2:-52013363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATCAAAACATAAAAA+AGG - chr5.2:52012676-52012695 None:intergenic 10.0%
!! ATATATCAAAACATAAAAAA+GGG - chr5.2:52012675-52012694 None:intergenic 10.0%
!!! TTTTTATGTTTTGATATATT+TGG + chr5.2:52012676-52012695 MS.gene062784:intron 10.0%
!! AAAAAAAATTACAAACAGAA+AGG - chr5.2:52015112-52015131 None:intergenic 15.0%
!! AAAAAAATTACAAACAGAAA+GGG - chr5.2:52015111-52015130 None:intergenic 15.0%
!! ACATAATTAGAAAATAAGAA+AGG - chr5.2:52013672-52013691 None:intergenic 15.0%
!! TATATCAAAACATAAAAAAG+GGG - chr5.2:52012674-52012693 None:intergenic 15.0%
!!! AAATTTAAGATAGACTATAT+TGG - chr5.2:52015378-52015397 None:intergenic 15.0%
!! AATTAATACAATCTGTATAG+TGG + chr5.2:52015147-52015166 MS.gene062784:intron 20.0%
!! ATATTAATAACTATGCTGTA+AGG + chr5.2:52015201-52015220 MS.gene062784:intron 20.0%
!! TATAAGATATTTCGGATTAT+TGG - chr5.2:52015288-52015307 None:intergenic 20.0%
!! TATGTAACATTTCTGATTAA+AGG - chr5.2:52013203-52013222 None:intergenic 20.0%
!! TGGCAAACTATATTATTAAT+TGG + chr5.2:52013579-52013598 MS.gene062784:intron 20.0%
!! TTACCTTTCTTTAACATAAT+TGG - chr5.2:52015079-52015098 None:intergenic 20.0%
!! TTAGAAAATAAGAAAGGTTT+AGG - chr5.2:52013666-52013685 None:intergenic 20.0%
!! TTGAATAGTGATTAATAGTT+CGG + chr5.2:52015500-52015519 MS.gene062784:intron 20.0%
!!! AATCTAAAGTAAATTTACCT+GGG - chr5.2:52012606-52012625 None:intergenic 20.0%
!!! ACACTGATTATAAGATATTT+CGG - chr5.2:52015296-52015315 None:intergenic 20.0%
!!! GATAATTTTTCCTTTCTTTT+CGG + chr5.2:52015718-52015737 MS.gene062784:intron 20.0%
! AAAATAAATTTCCTTCACAG+AGG - chr5.2:52014138-52014157 None:intergenic 25.0%
! AACAAAGCTTGAATCTATAA+AGG - chr5.2:52012849-52012868 None:intergenic 25.0%
! AACTCTTATAATCAATACAC+CGG - chr5.2:52015031-52015050 None:intergenic 25.0%
! ACAAAGCTTGAATCTATAAA+GGG - chr5.2:52012848-52012867 None:intergenic 25.0%
! ACAAATTAAACACACATTTG+AGG - chr5.2:52015927-52015946 None:intergenic 25.0%
! ACATCTCAACTATCAAAAAT+TGG - chr5.2:52015839-52015858 None:intergenic 25.0%
! ACTCCAATTATGTTAAAGAA+AGG + chr5.2:52015073-52015092 MS.gene062784:CDS 25.0%
! ACTGATTAATATCTAACATC+TGG + chr5.2:52013559-52013578 MS.gene062784:intron 25.0%
! ATAATGAGAACTCAAGAAAA+CGG - chr5.2:52014267-52014286 None:intergenic 25.0%
! ATTATTAACAGTGTTGTGTT+CGG - chr5.2:52013121-52013140 None:intergenic 25.0%
! TAATAAGATAACTGAGTCTT+TGG - chr5.2:52014814-52014833 None:intergenic 25.0%
! TAGTTAAACCAGCAATAATA+AGG - chr5.2:52012565-52012584 None:intergenic 25.0%
! TGAATAGTGATTAATAGTTC+GGG + chr5.2:52015501-52015520 MS.gene062784:intron 25.0%
! TTAATTATTGCCGAAAAGAA+AGG - chr5.2:52015731-52015750 None:intergenic 25.0%
! TTATTACCATCAGATTTCAT+TGG - chr5.2:52015590-52015609 None:intergenic 25.0%
!! ATCTAAAGTAAATTTACCTG+GGG - chr5.2:52012605-52012624 None:intergenic 25.0%
!! ATGTTTTCTGTGTTTTTCTT+TGG + chr5.2:52012788-52012807 MS.gene062784:intron 25.0%
!! ATTAATTTTGTTGCATGTTG+TGG + chr5.2:52014878-52014897 MS.gene062784:intron 25.0%
!! CAATCTAAAGTAAATTTACC+TGG - chr5.2:52012607-52012626 None:intergenic 25.0%
!!! CATGTTACATTTTGATTATC+AGG + chr5.2:52014289-52014308 MS.gene062784:intron 25.0%
!!! GTGAAGGAAATTTATTTTAC+CGG + chr5.2:52014140-52014159 MS.gene062784:CDS 25.0%
!!! TTTCAGTTTTAGTTTCTGAT+TGG + chr5.2:52014847-52014866 MS.gene062784:intron 25.0%
AAACAGAAGAAAAGCAAGAA+AGG - chr5.2:52013610-52013629 None:intergenic 30.0%
AAACATTAACCTAACGAGTT+TGG + chr5.2:52015525-52015544 MS.gene062784:intron 30.0%
AAATGTTCTTCCAATTGCTA+TGG - chr5.2:52014318-52014337 None:intergenic 30.0%
AACAAAGAAATGATGGCATT+AGG + chr5.2:52014368-52014387 MS.gene062784:CDS 30.0%
AATCTGATGGTAATAAGTGA+AGG + chr5.2:52015594-52015613 MS.gene062784:intron 30.0%
AATTCCCAGAATTAACTTAC+GGG - chr5.2:52012465-52012484 None:intergenic 30.0%
ACCAGCAATAATAAGGAATA+TGG - chr5.2:52012558-52012577 None:intergenic 30.0%
ACTCTTATAATCAATACACC+GGG - chr5.2:52015030-52015049 None:intergenic 30.0%
ACTTCTAAATAACTCTTCCA+GGG - chr5.2:52015988-52016007 None:intergenic 30.0%
AGGTAAAACACATAGAGAAA+GGG + chr5.2:52014102-52014121 MS.gene062784:intron 30.0%
ATACTCAAAGCTTGCAAATT+TGG + chr5.2:52012718-52012737 MS.gene062784:CDS 30.0%
ATATTCCCTATACTTAGTTG+GGG + chr5.2:52012491-52012510 MS.gene062784:CDS 30.0%
ATCAATCAAAAATCCTAACC+TGG - chr5.2:52013300-52013319 None:intergenic 30.0%
ATGAAAGACTATCAACTTGA+TGG + chr5.2:52014344-52014363 MS.gene062784:CDS 30.0%
ATGTTATATGTTGTCGATCA+GGG + chr5.2:52013688-52013707 MS.gene062784:intron 30.0%
CAATTCCCAGAATTAACTTA+CGG - chr5.2:52012466-52012485 None:intergenic 30.0%
CATATTCCCTATACTTAGTT+GGG + chr5.2:52012490-52012509 MS.gene062784:CDS 30.0%
CATCTTAATATCCTGCAATT+AGG - chr5.2:52015768-52015787 None:intergenic 30.0%
CTAATTGCAGGATATTAAGA+TGG + chr5.2:52015766-52015785 MS.gene062784:intron 30.0%
GAATAGTGATTAATAGTTCG+GGG + chr5.2:52015502-52015521 MS.gene062784:intron 30.0%
GATATATTTGGTCTGTAAAC+AGG + chr5.2:52012688-52012707 MS.gene062784:intron 30.0%
GCTAAAAGAAGTTTATGAAC+AGG - chr5.2:52013927-52013946 None:intergenic 30.0%
GGTTATGTATACAAACAAAG+TGG - chr5.2:52013776-52013795 None:intergenic 30.0%
TAGGTAAAACACATAGAGAA+AGG + chr5.2:52014101-52014120 MS.gene062784:intron 30.0%
TATGTTATATGTTGTCGATC+AGG + chr5.2:52013687-52013706 MS.gene062784:intron 30.0%
TCAAAAATTGGATTCGTGTT+TGG - chr5.2:52015827-52015846 None:intergenic 30.0%
TGATGGAAACAAAGAAATGA+TGG + chr5.2:52014361-52014380 MS.gene062784:CDS 30.0%
TTCTATAAACAGTTGTCCTA+GGG - chr5.2:52014975-52014994 None:intergenic 30.0%
TTGTAATAGGATCTTTGCAA+AGG - chr5.2:52014917-52014936 None:intergenic 30.0%
TTTCTATAAACAGTTGTCCT+AGG - chr5.2:52014976-52014995 None:intergenic 30.0%
! CAATTCCCAGAATTAACTTT+TGG - chr5.2:52012532-52012551 None:intergenic 30.0%
! TTTGGAGTGTATTTGAAAAG+CGG - chr5.2:52014624-52014643 None:intergenic 30.0%
! TTTTATCTATTGACGTGTGT+AGG + chr5.2:52014082-52014101 MS.gene062784:intron 30.0%
!! AAGAGTGCTTACAATATACT+TGG - chr5.2:52013634-52013653 None:intergenic 30.0%
!! ACAAGTTAAGTTGAGCATAA+AGG - chr5.2:52015881-52015900 None:intergenic 30.0%
!! TATACTGTCTTGCTATTATC+AGG + chr5.2:52014495-52014514 MS.gene062784:intron 30.0%
!! TCTAGTTCTAGACATGAAAT+AGG + chr5.2:52015442-52015461 MS.gene062784:intron 30.0%
!!! AGGTATGACTCATTGATTTT+AGG + chr5.2:52013032-52013051 MS.gene062784:intron 30.0%
!!! CATTATTGATTTTCGTGTGA+AGG - chr5.2:52013498-52013517 None:intergenic 30.0%
!!! GTGTTTTAAGAGTTTCACAT+TGG + chr5.2:52015464-52015483 MS.gene062784:intron 30.0%
AAAGTCCCGTAAGTTAATTC+TGG + chr5.2:52012457-52012476 MS.gene062784:CDS 35.0%
AAGTCCCGTAAGTTAATTCT+GGG + chr5.2:52012458-52012477 MS.gene062784:CDS 35.0%
AATAGCTCTTCAACAGCTTA+AGG + chr5.2:52013370-52013389 MS.gene062784:CDS 35.0%
ACCCTCCAAAAGTTAATTCT+GGG + chr5.2:52012524-52012543 MS.gene062784:CDS 35.0%
ACGAATCACTAACATAGACA+CGG + chr5.2:52013092-52013111 MS.gene062784:intron 35.0%
AGAAGTTTGTCTTCTTCACA+AGG + chr5.2:52012317-52012336 MS.gene062784:CDS 35.0%
AGATCCTATTACAAGTCACA+AGG + chr5.2:52014923-52014942 MS.gene062784:CDS 35.0%
ATACACTCCAAATGCAATTC+TGG + chr5.2:52014632-52014651 MS.gene062784:CDS 35.0%
ATAGCTCTTCAACAGCTTAA+GGG + chr5.2:52013371-52013390 MS.gene062784:CDS 35.0%
ATGCTAACGACATACCAATT+GGG + chr5.2:52013262-52013281 MS.gene062784:intron 35.0%
ATGTCGTTAGCATAAGAGTT+TGG - chr5.2:52013255-52013274 None:intergenic 35.0%
ATGTTTCTCTTACGGTGTAA+TGG - chr5.2:52012403-52012422 None:intergenic 35.0%
CCAACTAAGTATAGGGAATA+TGG - chr5.2:52012492-52012511 None:intergenic 35.0%
CCATATTCCCTATACTTAGT+TGG + chr5.2:52012489-52012508 MS.gene062784:CDS 35.0%
CCATCAGATTTCATTGGAAA+TGG - chr5.2:52015584-52015603 None:intergenic 35.0%
CCATTTCCAATGAAATCTGA+TGG + chr5.2:52015581-52015600 MS.gene062784:intron 35.0%
CGAGAAGAATGTTTCTCTTA+CGG - chr5.2:52012411-52012430 None:intergenic 35.0%
CGTAAGAGAAACATTCTTCT+CGG + chr5.2:52012409-52012428 MS.gene062784:CDS 35.0%
GACTTCTAAATAACTCTTCC+AGG - chr5.2:52015989-52016008 None:intergenic 35.0%
GACTTTGTCTGATCTTTGAA+AGG - chr5.2:52012443-52012462 None:intergenic 35.0%
GCCATATTCCTTATTATTGC+TGG + chr5.2:52012554-52012573 MS.gene062784:CDS 35.0%
GTAAGGACAGAAGTTGTATA+TGG + chr5.2:52015218-52015237 MS.gene062784:intron 35.0%
GTTACTGATATTGATACCAG+TGG + chr5.2:52015954-52015973 MS.gene062784:CDS 35.0%
GTTCAAAGACCAAAAATTGC+AGG + chr5.2:52015641-52015660 MS.gene062784:intron 35.0%
TAAATTTCCTTCACAGAGGA+AGG - chr5.2:52014134-52014153 None:intergenic 35.0%
TACAATCTGTATAGTGGTCT+AGG + chr5.2:52015153-52015172 MS.gene062784:intron 35.0%
TACCCTCCAAAAGTTAATTC+TGG + chr5.2:52012523-52012542 MS.gene062784:CDS 35.0%
TACTCAGTTGGATGTGTATT+CGG - chr5.2:52012977-52012996 None:intergenic 35.0%
TAGATATCCTAACCATCGTT+TGG - chr5.2:52015672-52015691 None:intergenic 35.0%
TATATGGTTCCGAAAATGTC+AGG + chr5.2:52015234-52015253 MS.gene062784:intron 35.0%
TATGCTAACGACATACCAAT+TGG + chr5.2:52013261-52013280 MS.gene062784:intron 35.0%
TATTATCAGGTTCCTTCTCT+CGG + chr5.2:52014508-52014527 MS.gene062784:intron 35.0%
TCCAAAACAAAACCTCTTCA+AGG + chr5.2:52012373-52012392 MS.gene062784:CDS 35.0%
TGCAATTAGGCATCAGAAAT+AGG - chr5.2:52015755-52015774 None:intergenic 35.0%
TTAGGAGCTATGAATGTTGT+TGG + chr5.2:52014386-52014405 MS.gene062784:CDS 35.0%
TTCTTCCCCAACTAAGTATA+GGG - chr5.2:52012499-52012518 None:intergenic 35.0%
TTGGATGTTGGATTGAGATT+TGG + chr5.2:52012807-52012826 MS.gene062784:intron 35.0%
! AAAGAAAGCATACTCCATGA+TGG - chr5.2:52013469-52013488 None:intergenic 35.0%
! AAGAAAGCATACTCCATGAT+GGG - chr5.2:52013468-52013487 None:intergenic 35.0%
! ACTGTTTTCATGAGCTATCT+TGG - chr5.2:52013957-52013976 None:intergenic 35.0%
! AGTTTGGTAGCACATGTATA+GGG - chr5.2:52013239-52013258 None:intergenic 35.0%
! ATTTGACTTTGTTGCTTGCA+TGG + chr5.2:52014728-52014747 MS.gene062784:CDS 35.0%
! CATGTCTAGAACTAGACATT+AGG - chr5.2:52015438-52015457 None:intergenic 35.0%
! CTGTGTTTTTCTTTGGATGT+TGG + chr5.2:52012795-52012814 MS.gene062784:intron 35.0%
! GTTTTTGCTTCAGTTGAGAT+AGG + chr5.2:52014768-52014787 MS.gene062784:CDS 35.0%
! TATTTCTGATGCCTAATTGC+AGG + chr5.2:52015754-52015773 MS.gene062784:intron 35.0%
! TCCCAGAATTAACTTTTGGA+GGG - chr5.2:52012528-52012547 None:intergenic 35.0%
! TGTAATGGAATTCCTTGAAG+AGG - chr5.2:52012388-52012407 None:intergenic 35.0%
! TTCCCAGAATTAACTTTTGG+AGG - chr5.2:52012529-52012548 None:intergenic 35.0%
! TTGGTTCATCCTGCAATTTT+TGG - chr5.2:52015653-52015672 None:intergenic 35.0%
! TTGTGAACTTTTGAATCCCA+AGG - chr5.2:52013400-52013419 None:intergenic 35.0%
! TTTGACTTTGTTGCTTGCAT+GGG + chr5.2:52014729-52014748 MS.gene062784:CDS 35.0%
! TTTGTCTGATCTTTGAAAGG+AGG - chr5.2:52012440-52012459 None:intergenic 35.0%
!! ACAAGGCAGCAATTTTGATA+TGG + chr5.2:52014694-52014713 MS.gene062784:CDS 35.0%
!!! TCCTTGAAGAGGTTTTGTTT+TGG - chr5.2:52012377-52012396 None:intergenic 35.0%
!!! TTGAAGAGGTTTTGTTTTGG+AGG - chr5.2:52012374-52012393 None:intergenic 35.0%
AACAGCTTAAGGGTTTCCTT+GGG + chr5.2:52013381-52013400 MS.gene062784:CDS 40.0%
ACCATATGACCAAACTCGTT+AGG - chr5.2:52015537-52015556 None:intergenic 40.0%
ACCTAACGAGTTTGGTCATA+TGG + chr5.2:52015533-52015552 MS.gene062784:intron 40.0%
AGCAAGTCTTCATACTCAGT+TGG - chr5.2:52012989-52013008 None:intergenic 40.0%
ATTGAGGCCAGAATTGCATT+TGG - chr5.2:52014642-52014661 None:intergenic 40.0%
ATTGGGTGGATATTTCAACC+AGG + chr5.2:52013279-52013298 MS.gene062784:intron 40.0%
CAGGATATTAAGATGGCTGA+TGG + chr5.2:52015773-52015792 MS.gene062784:intron 40.0%
CAGTCATTATCGAGTCATCT+AGG + chr5.2:52015405-52015424 MS.gene062784:intron 40.0%
CTAGATGACTCGATAATGAC+TGG - chr5.2:52015407-52015426 None:intergenic 40.0%
CTGCAATAGTCGGATTTATG+GGG + chr5.2:52013333-52013352 MS.gene062784:CDS 40.0%
CTGTTGAAGAGCTATTGTGA+TGG - chr5.2:52013366-52013385 None:intergenic 40.0%
GACAGCACAAATGATGATTG+AGG - chr5.2:52014658-52014677 None:intergenic 40.0%
GATAAATCCTTCCTCTGTGA+AGG + chr5.2:52014124-52014143 MS.gene062784:CDS 40.0%
GATATCAATGGAGCAATTGC+TGG - chr5.2:52013742-52013761 None:intergenic 40.0%
GCTGCAATAGTCGGATTTAT+GGG + chr5.2:52013332-52013351 MS.gene062784:CDS 40.0%
GGTTGAAATATCCACCCAAT+TGG - chr5.2:52013279-52013298 None:intergenic 40.0%
GTCATACACAGTCAATACTG+CGG - chr5.2:52012746-52012765 None:intergenic 40.0%
GTGAACATAGCAGAACATAC+TGG + chr5.2:52013850-52013869 MS.gene062784:intron 40.0%
GTGGATATTTCAACCAGGTT+AGG + chr5.2:52013284-52013303 MS.gene062784:intron 40.0%
GTTCTTCCCCAACTAAGTAT+AGG - chr5.2:52012500-52012519 None:intergenic 40.0%
TAAATAACTCTTCCAGGGCA+TGG - chr5.2:52015983-52016002 None:intergenic 40.0%
TATCAGGAAGCCATAGCAAT+TGG + chr5.2:52014305-52014324 MS.gene062784:intron 40.0%
TCAGCAGTAAATTTCATGGC+TGG + chr5.2:52014531-52014550 MS.gene062784:CDS 40.0%
TCGGTCAGCAGTAAATTTCA+TGG + chr5.2:52014527-52014546 MS.gene062784:CDS 40.0%
TGAAATGTAACCACCAGTGT+CGG + chr5.2:52013159-52013178 MS.gene062784:intron 40.0%
TGCAATAGTCGGATTTATGG+GGG + chr5.2:52013334-52013353 MS.gene062784:CDS 40.0%
TTGGTCTGTAAACAGGACAT+TGG + chr5.2:52012695-52012714 MS.gene062784:intron 40.0%
! ATTTTGTTGCATGTTGTGGC+AGG + chr5.2:52014882-52014901 MS.gene062784:intron 40.0%
! CATCAACCTTGTTGACTACA+AGG + chr5.2:52014677-52014696 MS.gene062784:CDS 40.0%
! CTAGTGACTCCTGACATTTT+CGG - chr5.2:52015246-52015265 None:intergenic 40.0%
! GAGAGTACGACAGATATCAA+TGG - chr5.2:52013754-52013773 None:intergenic 40.0%
! GAGTTTGGTAGCACATGTAT+AGG - chr5.2:52013240-52013259 None:intergenic 40.0%
! TTTCTGATTAAAGGCGCATC+AGG - chr5.2:52013194-52013213 None:intergenic 40.0%
ACTTCCTGCTATGTAGCAAC+TGG + chr5.2:52014416-52014435 MS.gene062784:CDS 45.0%
AGCAATATCCAGAAGCCACA+AGG + chr5.2:52015001-52015020 MS.gene062784:CDS 45.0%
AGGCGTTAGAATTGGCATTG+TGG + chr5.2:52014178-52014197 MS.gene062784:CDS 45.0%
ATGACGGCATAAATCAGTGG+TGG - chr5.2:52012872-52012891 None:intergenic 45.0%
ATGCGACGTGAATAGTGGTT+AGG + chr5.2:52015339-52015358 MS.gene062784:intron 45.0%
ATTTACTGCTGACCGAGAGA+AGG - chr5.2:52014523-52014542 None:intergenic 45.0%
CAACAGCTTAAGGGTTTCCT+TGG + chr5.2:52013380-52013399 MS.gene062784:CDS 45.0%
CAATTCTAACGCCTTTCGCA+AGG - chr5.2:52014172-52014191 None:intergenic 45.0%
CACATGACGGCATAAATCAG+TGG - chr5.2:52012875-52012894 None:intergenic 45.0%
CATACCTAAAAACGCCAACG+TGG - chr5.2:52013019-52013038 None:intergenic 45.0%
CGCTGCAATAGTCGGATTTA+TGG + chr5.2:52013331-52013350 MS.gene062784:CDS 45.0%
CTAACGACATACCAATTGGG+TGG + chr5.2:52013265-52013284 MS.gene062784:intron 45.0%
CTATCACACGCTGCAATAGT+CGG + chr5.2:52013323-52013342 MS.gene062784:CDS 45.0%
CTGGAACCCAAAAGAACTTC+TGG - chr5.2:52013723-52013742 None:intergenic 45.0%
CTTACCAGTTGCTACATAGC+AGG - chr5.2:52014423-52014442 None:intergenic 45.0%
GCAATAGTCGGATTTATGGG+GGG + chr5.2:52013335-52013354 MS.gene062784:CDS 45.0%
GCAATATCCAGAAGCCACAA+GGG + chr5.2:52015002-52015021 MS.gene062784:CDS 45.0%
GCTATGTTCACGATGAGAGA+AGG - chr5.2:52013841-52013860 None:intergenic 45.0%
GGAGTCACTAGTTATGCATG+AGG + chr5.2:52015255-52015274 MS.gene062784:intron 45.0%
GGATGAACCAAACGATGGTT+AGG + chr5.2:52015662-52015681 MS.gene062784:intron 45.0%
GTATTCTCATCAGCCCATCA+TGG + chr5.2:52013452-52013471 MS.gene062784:CDS 45.0%
GTTAGAATTGGCATTGTGGC+TGG + chr5.2:52014182-52014201 MS.gene062784:CDS 45.0%
GTTGTCGATCAGGGAAAGAA+GGG + chr5.2:52013697-52013716 MS.gene062784:intron 45.0%
TCGCATCACTGTCTAATGTG+AGG - chr5.2:52015325-52015344 None:intergenic 45.0%
TCTTCCCCAGAATAGCAGTT+CGG - chr5.2:52014951-52014970 None:intergenic 45.0%
TGTTGTCGATCAGGGAAAGA+AGG + chr5.2:52013696-52013715 MS.gene062784:intron 45.0%
TTGCAGGATGAACCAAACGA+TGG + chr5.2:52015657-52015676 MS.gene062784:intron 45.0%
TTGCTGCCTTGTAGTCAACA+AGG - chr5.2:52014686-52014705 None:intergenic 45.0%
TTGTGGCTTCTGGATATTGC+TGG - chr5.2:52015002-52015021 None:intergenic 45.0%
TTTGTCTTCTTCACAAGGCC+AGG + chr5.2:52012322-52012341 MS.gene062784:CDS 45.0%
! AGAAGGGCCAGAAGTTCTTT+TGG + chr5.2:52013713-52013732 MS.gene062784:CDS 45.0%
! GAAGGGCCAGAAGTTCTTTT+GGG + chr5.2:52013714-52013733 MS.gene062784:CDS 45.0%
!! ACTTGCTTTTACTGCCACGT+TGG + chr5.2:52013002-52013021 MS.gene062784:intron 45.0%
!! CTTGCGAAAGGCGTTAGAAT+TGG + chr5.2:52014170-52014189 MS.gene062784:CDS 45.0%
!!! CTTGCATGGGAGCATTTTTC+GGG + chr5.2:52014742-52014761 MS.gene062784:CDS 45.0%
!!! GCTTGCATGGGAGCATTTTT+CGG + chr5.2:52014741-52014760 MS.gene062784:CDS 45.0%
!!! TTGCATGGGAGCATTTTTCG+GGG + chr5.2:52014743-52014762 MS.gene062784:CDS 45.0%
AACACCATGCTTGTCTGCAC+GGG - chr5.2:52013797-52013816 None:intergenic 50.0%
ACCGGTGATTACCTTGCGAA+AGG + chr5.2:52014158-52014177 MS.gene062784:CDS 50.0%
ACTCCAACCTTGTGCGTGTA+TGG - chr5.2:52012350-52012369 None:intergenic 50.0%
ATAACCCGTGCAGACAAGCA+TGG + chr5.2:52013790-52013809 MS.gene062784:CDS 50.0%
CAACACCATGCTTGTCTGCA+CGG - chr5.2:52013798-52013817 None:intergenic 50.0%
CAGTGATGCGACGTGAATAG+TGG + chr5.2:52015334-52015353 MS.gene062784:intron 50.0%
CCCCAACAAGAGAGAAACCA+CGG - chr5.2:52012930-52012949 None:intergenic 50.0%
CCGTGGTTTCTCTCTTGTTG+GGG + chr5.2:52012927-52012946 MS.gene062784:CDS 50.0%
CGACTATTGCAGCGTGTGAT+AGG - chr5.2:52013325-52013344 None:intergenic 50.0%
CTTCCCCAGAATAGCAGTTC+GGG - chr5.2:52014950-52014969 None:intergenic 50.0%
GAACCATACACGCACAAGGT+TGG + chr5.2:52012344-52012363 MS.gene062784:CDS 50.0%
GCCGTGGTTTCTCTCTTGTT+GGG + chr5.2:52012926-52012945 MS.gene062784:CDS 50.0%
GCCTTTCGCAAGGTAATCAC+CGG - chr5.2:52014162-52014181 None:intergenic 50.0%
TTCCCCAGAATAGCAGTTCG+GGG - chr5.2:52014949-52014968 None:intergenic 50.0%
! ACTGCCACGTTGGCGTTTTT+AGG + chr5.2:52013012-52013031 MS.gene062784:intron 50.0%
! CTATTCTGGGGAAGATCCCT+AGG + chr5.2:52014956-52014975 MS.gene062784:CDS 50.0%
! GGGGCCTTGTGACTTGTAAT+AGG - chr5.2:52014930-52014949 None:intergenic 50.0%
!! TAACCACCAGTGTCGGTGTT+AGG + chr5.2:52013166-52013185 MS.gene062784:intron 50.0%
AAGGCCCCGAACTGCTATTC+TGG + chr5.2:52014942-52014961 MS.gene062784:CDS 55.0%
AGGCCCCGAACTGCTATTCT+GGG + chr5.2:52014943-52014962 MS.gene062784:CDS 55.0%
AGTTCCCGCGACATTGCGAT+AGG + chr5.2:52012896-52012915 MS.gene062784:CDS 55.0%
CAATACACCGGGAACCCTTG+TGG - chr5.2:52015019-52015038 None:intergenic 55.0%
CCAGGAACCATACACGCACA+AGG + chr5.2:52012340-52012359 MS.gene062784:CDS 55.0%
CCTTGTGCGTGTATGGTTCC+TGG - chr5.2:52012343-52012362 None:intergenic 55.0%
CGACATTGCGATAGGGACAG+TGG + chr5.2:52012904-52012923 MS.gene062784:CDS 55.0%
CTGTCCCTATCGCAATGTCG+CGG - chr5.2:52012904-52012923 None:intergenic 55.0%
GGCCGTGGTTTCTCTCTTGT+TGG + chr5.2:52012925-52012944 MS.gene062784:CDS 55.0%
GTCGCGGGAACTACACATGA+CGG - chr5.2:52012888-52012907 None:intergenic 55.0%
GTTCCCGCGACATTGCGATA+GGG + chr5.2:52012897-52012916 MS.gene062784:CDS 55.0%
TGCAAGTCTCTGCATTCCCC+AGG + chr5.2:52012586-52012605 MS.gene062784:CDS 55.0%
TGTCCCTATCGCAATGTCGC+GGG - chr5.2:52012903-52012922 None:intergenic 55.0%
CAGGTGCCTAACACCGACAC+TGG - chr5.2:52013175-52013194 None:intergenic 60.0%
CCAGAAGCCACAAGGGTTCC+CGG + chr5.2:52015009-52015028 MS.gene062784:CDS 60.0%
GGCCCCGAACTGCTATTCTG+GGG + chr5.2:52014944-52014963 MS.gene062784:CDS 60.0%
GTGCCTAACACCGACACTGG+TGG - chr5.2:52013172-52013191 None:intergenic 60.0%
TACCAGTGGCATCCATGCCC+TGG + chr5.2:52015968-52015987 MS.gene062784:CDS 60.0%
TTCCAGGGCATGGATGCCAC+TGG - chr5.2:52015973-52015992 None:intergenic 60.0%
! CATGGCTGGCTGCGAAACTG+CGG + chr5.2:52014545-52014564 MS.gene062784:CDS 60.0%
CCGGGAACCCTTGTGGCTTC+TGG - chr5.2:52015012-52015031 None:intergenic 65.0%
TGCGATAGGGACAGTGGCCG+TGG + chr5.2:52012910-52012929 MS.gene062784:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 52012308 52016028 52012308 ID=MS.gene062784
chr5.2 mRNA 52012308 52016028 52012308 ID=MS.gene062784.t1;Parent=MS.gene062784
chr5.2 exon 52012308 52012607 52012308 ID=MS.gene062784.t1.exon1;Parent=MS.gene062784.t1
chr5.2 CDS 52012308 52012607 52012308 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
chr5.2 exon 52012710 52012747 52012710 ID=MS.gene062784.t1.exon2;Parent=MS.gene062784.t1
chr5.2 CDS 52012710 52012747 52012710 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
chr5.2 exon 52012862 52012993 52012862 ID=MS.gene062784.t1.exon3;Parent=MS.gene062784.t1
chr5.2 CDS 52012862 52012993 52012862 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
chr5.2 exon 52013301 52013475 52013301 ID=MS.gene062784.t1.exon4;Parent=MS.gene062784.t1
chr5.2 CDS 52013301 52013475 52013301 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
chr5.2 exon 52013709 52013822 52013709 ID=MS.gene062784.t1.exon5;Parent=MS.gene062784.t1
chr5.2 CDS 52013709 52013822 52013709 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
chr5.2 exon 52014104 52014220 52014104 ID=MS.gene062784.t1.exon6;Parent=MS.gene062784.t1
chr5.2 CDS 52014104 52014220 52014104 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
chr5.2 exon 52014311 52014437 52014311 ID=MS.gene062784.t1.exon7;Parent=MS.gene062784.t1
chr5.2 CDS 52014311 52014437 52014311 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
chr5.2 exon 52014517 52014803 52014517 ID=MS.gene062784.t1.exon8;Parent=MS.gene062784.t1
chr5.2 CDS 52014517 52014803 52014517 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
chr5.2 exon 52014904 52015094 52014904 ID=MS.gene062784.t1.exon9;Parent=MS.gene062784.t1
chr5.2 CDS 52014904 52015094 52014904 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
chr5.2 exon 52015776 52015861 52015776 ID=MS.gene062784.t1.exon10;Parent=MS.gene062784.t1
chr5.2 CDS 52015776 52015861 52015776 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
chr5.2 exon 52015952 52016028 52015952 ID=MS.gene062784.t1.exon11;Parent=MS.gene062784.t1
chr5.2 CDS 52015952 52016028 52015952 ID=cds.MS.gene062784.t1;Parent=MS.gene062784.t1
Gene Sequence

>MS.gene062784

ATGGATAGCAGAAGTTTGTCTTCTTCACAAGGCCAGGAACCATACACGCACAAGGTTGGAGTTCCTCCAAAACAAAACCTCTTCAAGGAATTCCATTACACCGTAAGAGAAACATTCTTCTCGGACGATCCTCCTTTCAAAGATCAGACAAAGTCCCGTAAGTTAATTCTGGGAATTGAAGCCATATTCCCTATACTTAGTTGGGGAAGAACGTATACCCTCCAAAAGTTAATTCTGGGAATTGAAGCCATATTCCTTATTATTGCTGGTTTAACTATTGCAAGTCTCTGCATTCCCCAGGTAAATTTACTTTAGATTGTTTATTCTTTTAAAAATAAATTTGTATTTTTAATTGATTGCTTTCCCCTTTTTTATGTTTTGATATATTTGGTCTGTAAACAGGACATTGGATACTCAAAGCTTGCAAATTTGGCTCCGCAGTATTGACTGTGTATGACTCTTGTTTCTCATCACAAGCTCATGTTTTCTGTGTTTTTCTTTGGATGTTGGATTGAGATTTGGTTGTGTTTTGTTTTACCCTTTATAGATTCAAGCTTTGTTCCACCACTGATTTATGCCGTCATGTGTAGTTCCCGCGACATTGCGATAGGGACAGTGGCCGTGGTTTCTCTCTTGTTGGGGACTTTACTACAGAATGAGATTGATCCGAATACACATCCAACTGAGTATGAAGACTTGCTTTTACTGCCACGTTGGCGTTTTTAGGTATGACTCATTGATTTTAGGCGAGTTTATTTTTTAATTTTTCTAGCAATATTGTTCTACGAATCACTAACATAGACACGGACACCGAACACAACACTGTTAATAATTTGATAAAATGAAAGTGATGAAATGTAACCACCAGTGTCGGTGTTAGGCACCTGATGCGCCTTTAATCAGAAATGTTACATAGCTAGTGTTAATGCCCTATACATGTGCTACCAAACTCTTATGCTAACGACATACCAATTGGGTGGATATTTCAACCAGGTTAGGATTTTTGATTGATTTCCTATCACACGCTGCAATAGTCGGATTTATGGGGGGAGCTGCCATCACAATAGCTCTTCAACAGCTTAAGGGTTTCCTTGGGATTCAAAAGTTCACAAAGAAAACTGATATAATATCTGTGATGAATTCAGTATTCTCATCAGCCCATCATGGAGTATGCTTTCTTTTCTATACCTTCACACGAAAATCAATAATGAGATTCTAAGATATATGTATGTGTGTGTTGCAAATACTAAAACTGATTAATATCTAACATCTGGCAAACTATATTATTAATTGGATCTACCTTTCTTGCTTTTCTTCTGTTTGCCAAGTATATTGTAAGCACTCTTATTCATTTTCCTAAACCTTTCTTATTTTCTAATTATGTTATATGTTGTCGATCAGGGAAAGAAGGGCCAGAAGTTCTTTTGGGTTCCAGCAATTGCTCCATTGATATCTGTCGTACTCTCCACTTTGTTTGTATACATAACCCGTGCAGACAAGCATGGTGTTGCGATTGTAAGTATATATAATCCTTCTCTCATCGTGAACATAGCAGAACATACTGGCATAAACACTTGTGAGACTGTTTTGAGAGAGCTTATGAAAACAATTTATGTCCTGTTCATAAACTTCTTTTAGCTTGTGTTCCAAGATAGCTCATGAAAACAGTTTATAACTTTTATGAAAAGAGTTTGAATTTATTTGTCTTTTCTTATAAAACTAGCTCATATGTAATAAACGCTTAATTAAGCTGTTTATCGATAGTAGTGAATGTTTTTATCTATTGACGTGTGTAGGTAAAACACATAGAGAAAGGGATAAATCCTTCCTCTGTGAAGGAAATTTATTTTACCGGTGATTACCTTGCGAAAGGCGTTAGAATTGGCATTGTGGCTGGCATGATAGCTTTGACTGTAAGAAAACTGAGACTATTATCTTCACTCAAAGAGTATTTTACCGTTTTCTTGAGTTCTCATTATAACATGTTACATTTTGATTATCAGGAAGCCATAGCAATTGGAAGAACATTTGCTTCTATGAAAGACTATCAACTTGATGGAAACAAAGAAATGATGGCATTAGGAGCTATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAGCAACTGGTAAGATTGAGAAATTCGTTTAAGCGTGTTATAAACTAATCGTTTTATATTTGCTGATATACTGTCTTGCTATTATCAGGTTCCTTCTCTCGGTCAGCAGTAAATTTCATGGCTGGCTGCGAAACTGCGGTCTCTAATATTGTCATGTCTGTTGTTGTGTTCTTAACTCTGCAATTCATCACACCGCTTTTCAAATACACTCCAAATGCAATTCTGGCCTCAATCATCATTTGTGCTGTCATCAACCTTGTTGACTACAAGGCAGCAATTTTGATATGGAAAATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTCGGGGTCGTTTTTGCTTCAGTTGAGATAGGACTTTTGATTGCTGTAAGTACCAAAGACTCAGTTATCTTATTATGCTCTAAAATAATTTCAGTTTTAGTTTCTGATTGGTTACTAGTATTAATTTTGTTGCATGTTGTGGCAGGTTTCTATATCCTTTGCAAAGATCCTATTACAAGTCACAAGGCCCCGAACTGCTATTCTGGGGAAGATCCCTAGGACAACTGTTTATAGAAACATCCAGCAATATCCAGAAGCCACAAGGGTTCCCGGTGTATTGATTATAAGAGTTGATTCTGCAATATATTTTTCTAACTCCAATTATGTTAAAGAAAGGTAATAAATTATTCCCTTTCTGTTTGTAATTTTTTTTGATTGAATTGAAATGAATTAATACAATCTGTATAGTGGTCTAGGAAGCTGTATATCTTTTTTCGCAATCATATTAATAACTATGCTGTAAGGACAGAAGTTGTATATGGTTCCGAAAATGTCAGGAGTCACTAGTTATGCATGAGGATAACATCCAATAATCCGAAATATCTTATAATCAGTGTAGTGAGCCTCACATTAGACAGTGATGCGACGTGAATAGTGGTTAGGTTCAAACACAATTCCAATATAGTCTATCTTAAATTTATTGTGCCAGTCATTATCGAGTCATCTAGGTCACACTCCTAATGTCTAGTTCTAGACATGAAATAGGTGTTTTAAGAGTTTCACATTGGATAGTTGTATAGTTTGAATAGTGATTAATAGTTCGGGGAAACATTAACCTAACGAGTTTGGTCATATGGTTTAATAATAGTTAAAAGATGCATGCCATTTCCAATGAAATCTGATGGTAATAAGTGAAGGTTAGTCTAAAAACGAAAGAAACATGTTCAAAGACCAAAAATTGCAGGATGAACCAAACGATGGTTAGGATATCTAATCGAGTTACACATATATTATAAAATGATAATTTTTCCTTTCTTTTCGGCAATAATTAAACCTATTTCTGATGCCTAATTGCAGGATATTAAGATGGCTGATGGATGAAGAAGAACGAGTGAATAGAGACTACCAAACACGAATCCAATTTTTGATAGTTGAGATGTCACGTGAGTCTCTAACTTTCCTTTATGCTCAACTTAACTTGTCGCATAATTAAGAATATGCTTAACCTCAAATGTGTGTTTAATTTGTTGCAGCTGTTACTGATATTGATACCAGTGGCATCCATGCCCTGGAAGAGTTATTTAGAAGTCTTCAAAAGAGAGAAGTTCAG
Protein sequence

>MS.gene062784.t1

MDSRSLSSSQGQEPYTHKVGVPPKQNLFKEFHYTVRETFFSDDPPFKDQTKSRKLILGIEAIFPILSWGRTYTLQKLILGIEAIFLIIAGLTIASLCIPQDIGYSKLANLAPHFVPPLIYAVMCSSRDIAIGTVAVVSLLLGTLLQNEIDPNTHPTELGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKKTDIISVMNSVFSSAHHGGKKGQKFFWVPAIAPLISVVLSTLFVYITRADKHGVAIVKHIEKGINPSSVKEIYFTGDYLAKGVRIGIVAGMIALTEAIAIGRTFASMKDYQLDGNKEMMALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIVMSVVVFLTLQFITPLFKYTPNAILASIIICAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATRVPGVLIIRVDSAIYFSNSNYVKERILRWLMDEEERVNRDYQTRIQFLIVEMSPVTDIDTSGIHALEELFRSLQKREVQ