Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053903.t1 | XP_013453935.1 | 65.2 | 184 | 18 | 2 | 2 | 139 | 146 | 329 | 5.70E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053903.t1 | A0A3Q7JC00 | 80.4 | 107 | 20 | 1 | 2 | 108 | 544 | 649 | 7.8e-41 | 167.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053903.t1 | G7JYD6 | 65.2 | 184 | 18 | 2 | 2 | 139 | 175 | 358 | 4.1e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05265 | MS.gene053903 | 0.802611 | 5.17E-49 | -1.69E-46 |
| MS.gene053903 | MS.gene96537 | 0.810612 | 1.06E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053903.t1 | MTR_5g054690 | 65.761 | 184 | 17 | 2 | 2 | 139 | 135 | 318 | 5.61e-74 | 223 |
| MS.gene053903.t1 | MTR_5g054690 | 52.941 | 85 | 32 | 3 | 9 | 86 | 19 | 102 | 1.48e-20 | 85.5 |
| MS.gene053903.t1 | MTR_5g054690 | 65.761 | 184 | 17 | 2 | 2 | 139 | 146 | 329 | 1.14e-73 | 223 |
| MS.gene053903.t1 | MTR_5g054690 | 70.588 | 85 | 24 | 1 | 2 | 86 | 30 | 113 | 8.11e-38 | 131 |
| MS.gene053903.t1 | MTR_5g054690 | 65.761 | 184 | 17 | 2 | 2 | 139 | 164 | 347 | 2.68e-73 | 223 |
| MS.gene053903.t1 | MTR_5g054690 | 62.037 | 108 | 33 | 3 | 9 | 109 | 19 | 125 | 8.03e-36 | 126 |
| MS.gene053903.t1 | MTR_5g054690 | 65.761 | 184 | 17 | 2 | 2 | 139 | 175 | 358 | 4.72e-73 | 222 |
| MS.gene053903.t1 | MTR_5g054690 | 75.926 | 108 | 25 | 1 | 2 | 109 | 30 | 136 | 2.03e-53 | 172 |
| MS.gene053903.t1 | MTR_5g054680 | 85.185 | 108 | 15 | 1 | 2 | 109 | 559 | 665 | 1.10e-57 | 191 |
| MS.gene053903.t1 | MTR_1g013000 | 71.818 | 110 | 30 | 1 | 2 | 111 | 397 | 505 | 1.08e-49 | 167 |
| MS.gene053903.t1 | MTR_7g077950 | 58.036 | 112 | 47 | 0 | 2 | 113 | 78 | 189 | 2.89e-35 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053903.t1 | AT1G25540 | 76.852 | 108 | 24 | 1 | 2 | 109 | 452 | 558 | 2.50e-48 | 165 |
| MS.gene053903.t1 | AT1G25540 | 76.852 | 108 | 24 | 1 | 2 | 109 | 561 | 667 | 1.12e-47 | 164 |
Find 30 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGAACTATTTGCATTTC+AGG | 0.113993 | 5.3:-43351039 | None:intergenic |
| GGTAGATTTCCTAGTATTTC+GGG | 0.221474 | 5.3:+43351209 | MS.gene053903:CDS |
| AATTTCTGTGGCAGGCTTAC+AGG | 0.241231 | 5.3:+43349416 | MS.gene053903:intron |
| AGGTAGATTTCCTAGTATTT+CGG | 0.261186 | 5.3:+43351208 | MS.gene053903:CDS |
| TTCATGCAGGGAAGCTTATT+AGG | 0.302807 | 5.3:+43349162 | None:intergenic |
| TCGAGTTTGGTGATAAATAC+TGG | 0.337811 | 5.3:-43349201 | None:intergenic |
| GACATAGCCTGCCGCTTGAT+TGG | 0.363409 | 5.3:+43351561 | MS.gene053903:CDS |
| AACTCAGACTTGCAATAAAC+TGG | 0.372283 | 5.3:+43351013 | MS.gene053903:intron |
| TGTGTCCTTGAGAAACCATT+TGG | 0.384622 | 5.3:-43351853 | None:intergenic |
| TCGGGAACATACTTCGAGTT+TGG | 0.406935 | 5.3:-43349214 | None:intergenic |
| ACATAGCCTGCCGCTTGATT+GGG | 0.412141 | 5.3:+43351562 | MS.gene053903:CDS |
| GGTTCATTGCCCGAAATACT+AGG | 0.430935 | 5.3:-43351218 | None:intergenic |
| AATAGTTCAGCTTATATCTC+AGG | 0.461263 | 5.3:+43351050 | MS.gene053903:CDS |
| GATGGTTGGAAATTTCCAAA+TGG | 0.515298 | 5.3:+43351838 | MS.gene053903:intron |
| GGTGCTGCAAAGATTGAAGA+AGG | 0.517265 | 5.3:+43351887 | MS.gene053903:CDS |
| AAGCATCCCAATCAAGCGGC+AGG | 0.528805 | 5.3:-43351568 | None:intergenic |
| AATTTCCAAATGGTTTCTCA+AGG | 0.529655 | 5.3:+43351848 | MS.gene053903:CDS |
| ATAACTAGGCAACAATATGT+AGG | 0.536770 | 5.3:+43351183 | MS.gene053903:intron |
| TTGAATTTGAAATTCATGCA+GGG | 0.563481 | 5.3:+43349150 | None:intergenic |
| CATCAGCAGCCACAGATGGT+TGG | 0.571440 | 5.3:+43351824 | MS.gene053903:intron |
| CAAGGACACATTTCATCACA+AGG | 0.576950 | 5.3:+43351866 | MS.gene053903:CDS |
| TAGGCAACAATATGTAGGAA+AGG | 0.590527 | 5.3:+43351188 | MS.gene053903:intron |
| GATAGTAGCAAAGTCTGTGA+TGG | 0.592883 | 5.3:-43351531 | None:intergenic |
| ATAAAAGCATCCCAATCAAG+CGG | 0.633766 | 5.3:-43351572 | None:intergenic |
| TTTCGGGCAATGAACCCACA+TGG | 0.650615 | 5.3:+43351225 | MS.gene053903:CDS |
| GTGCTGCAAAGATTGAAGAA+GGG | 0.655238 | 5.3:+43351888 | MS.gene053903:CDS |
| ATCCGAAACTTACGTCTCAG+AGG | 0.669622 | 5.3:-43349449 | None:intergenic |
| AGCTTATTAGGACTTAGACA+AGG | 0.700678 | 5.3:+43349174 | MS.gene053903:CDS |
| GCAGACCAAGAAAACCATGT+GGG | 0.705252 | 5.3:-43351239 | None:intergenic |
| AGCAGACCAAGAAAACCATG+TGG | 0.733881 | 5.3:-43351240 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAGTATTTAATGTT+GGG | + | chr5.3:43349545-43349564 | MS.gene053903:intron | 10.0% |
| !! | TAATTATTAGTATTTAATGT+TGG | + | chr5.3:43349544-43349563 | MS.gene053903:intron | 10.0% |
| !!! | ACTGTTTAATTTTTTTTTCT+CGG | - | chr5.3:43350136-43350155 | None:intergenic | 15.0% |
| !!! | TAATACAACATATTTTTGTT+TGG | + | chr5.3:43350084-43350103 | MS.gene053903:intron | 15.0% |
| !!! | TAATTTTATATCCTATAACT+AGG | + | chr5.3:43351169-43351188 | MS.gene053903:intron | 15.0% |
| !!! | TATTTTGTTAGTTTTTATTG+TGG | - | chr5.3:43350739-43350758 | None:intergenic | 15.0% |
| !!! | TTGTTATTTATACTATTTTG+TGG | + | chr5.3:43349356-43349375 | MS.gene053903:intron | 15.0% |
| !! | AAATGTTAGATGATATGATT+TGG | - | chr5.3:43350909-43350928 | None:intergenic | 20.0% |
| !! | AATAAGAAAATCACTATTTC+AGG | - | chr5.3:43350025-43350044 | None:intergenic | 20.0% |
| !! | AATGTCTTATCTTTAAATTC+AGG | + | chr5.3:43351363-43351382 | MS.gene053903:intron | 20.0% |
| !! | AGGTGAATTACTTATTATTA+TGG | + | chr5.3:43350617-43350636 | MS.gene053903:intron | 20.0% |
| !! | ATTATTAATTCATAACCAAC+AGG | - | chr5.3:43351409-43351428 | None:intergenic | 20.0% |
| !!! | AAAAGCATTTTTTATACTAG+AGG | + | chr5.3:43350548-43350567 | MS.gene053903:intron | 20.0% |
| !!! | AAAGAATACAAGTTGAAATA+AGG | - | chr5.3:43351098-43351117 | None:intergenic | 20.0% |
| !!! | TTCTATTTTAAATCTGTGAT+GGG | + | chr5.3:43351627-43351646 | MS.gene053903:intron | 20.0% |
| !!! | TTTCTATTTTAAATCTGTGA+TGG | + | chr5.3:43351626-43351645 | MS.gene053903:intron | 20.0% |
| !!! | TTTTCTTATTGTGCAAAAAT+TGG | + | chr5.3:43350035-43350054 | MS.gene053903:intron | 20.0% |
| ! | AAAGATAAGACATTCTAACT+AGG | - | chr5.3:43351357-43351376 | None:intergenic | 25.0% |
| ! | AGTATAAAGAATGCCAATAA+TGG | + | chr5.3:43350506-43350525 | MS.gene053903:intron | 25.0% |
| ! | GAAGTAGTAATTCCTTAAAA+TGG | + | chr5.3:43349628-43349647 | MS.gene053903:intron | 25.0% |
| ! | GATGTATCAATAAACTCAAA+TGG | - | chr5.3:43350198-43350217 | None:intergenic | 25.0% |
| ! | TACAAAATATTGTCGAATAG+AGG | + | chr5.3:43349773-43349792 | MS.gene053903:intron | 25.0% |
| ! | TAGAATATAAACTCGTGAAT+AGG | + | chr5.3:43351444-43351463 | MS.gene053903:intron | 25.0% |
| ! | TATTAAGAATAAGACTGCAA+AGG | - | chr5.3:43349335-43349354 | None:intergenic | 25.0% |
| ! | TTCACAATACAGAATGAAAT+TGG | - | chr5.3:43350858-43350877 | None:intergenic | 25.0% |
| ! | TTGTTAAATAGAAGCTATAC+CGG | + | chr5.3:43349693-43349712 | MS.gene053903:intron | 25.0% |
| !! | AATATATTTTATCAGGCAGT+CGG | - | chr5.3:43349236-43349255 | None:intergenic | 25.0% |
| !! | CTCTTCATTTAAAACAGTAA+AGG | + | chr5.3:43350597-43350616 | MS.gene053903:intron | 25.0% |
| !!! | ATTTAATGTTGGGTTGATTT+TGG | + | chr5.3:43349555-43349574 | MS.gene053903:intron | 25.0% |
| !!! | TACTGTTTTAAATGAAGAGT+GGG | - | chr5.3:43350596-43350615 | None:intergenic | 25.0% |
| !!! | TATTTGTGACTTGCTAATTT+TGG | + | chr5.3:43351285-43351304 | MS.gene053903:intron | 25.0% |
| !!! | TTAACAGTTTTTTGTATCTC+AGG | + | chr5.3:43351117-43351136 | MS.gene053903:intron | 25.0% |
| !!! | TTACTGTTTTAAATGAAGAG+TGG | - | chr5.3:43350597-43350616 | None:intergenic | 25.0% |
| !!! | TTGTTAGTTTTTATTGTGGA+TGG | - | chr5.3:43350735-43350754 | None:intergenic | 25.0% |
| AAAATCAGTGTTGTCAATTG+CGG | - | chr5.3:43349861-43349880 | None:intergenic | 30.0% | |
| AAGTTGAAATAAGGACATAC+AGG | - | chr5.3:43351089-43351108 | None:intergenic | 30.0% | |
| AATAGTTCAGCTTATATCTC+AGG | + | chr5.3:43351050-43351069 | MS.gene053903:CDS | 30.0% | |
| AATTTCCAAATGGTTTCTCA+AGG | + | chr5.3:43351848-43351867 | MS.gene053903:CDS | 30.0% | |
| ACAATACAGAATGAAATTGG+AGG | - | chr5.3:43350855-43350874 | None:intergenic | 30.0% | |
| ACATATTGTTGCCTAGTTAT+AGG | - | chr5.3:43351183-43351202 | None:intergenic | 30.0% | |
| AGGTAGATTTCCTAGTATTT+CGG | + | chr5.3:43351208-43351227 | MS.gene053903:CDS | 30.0% | |
| AGTCTGAGTTTAATAAAAGG+TGG | - | chr5.3:43351003-43351022 | None:intergenic | 30.0% | |
| AGTTTATATTCTACTGGTCA+CGG | - | chr5.3:43351437-43351456 | None:intergenic | 30.0% | |
| ATAACTAGGCAACAATATGT+AGG | + | chr5.3:43351183-43351202 | MS.gene053903:intron | 30.0% | |
| ATATAAACTCGTGAATAGGA+TGG | + | chr5.3:43351448-43351467 | MS.gene053903:intron | 30.0% | |
| ATCCTGATGTATAATTTCTG+TGG | + | chr5.3:43349404-43349423 | MS.gene053903:intron | 30.0% | |
| CCATATAGGTTAATGATGAT+AGG | - | chr5.3:43349312-43349331 | None:intergenic | 30.0% | |
| CCTATCATCATTAACCTATA+TGG | + | chr5.3:43349309-43349328 | MS.gene053903:intron | 30.0% | |
| CTTGCATAGAAATGATTTAC+TGG | + | chr5.3:43350337-43350356 | MS.gene053903:intron | 30.0% | |
| GAGTTTATTGATACATCTAC+TGG | + | chr5.3:43350201-43350220 | MS.gene053903:intron | 30.0% | |
| GCAAGTCTGAGTTTAATAAA+AGG | - | chr5.3:43351006-43351025 | None:intergenic | 30.0% | |
| TAAAAGGTGGTGAGTAAAAA+TGG | - | chr5.3:43350990-43351009 | None:intergenic | 30.0% | |
| TATTCAATTGCAGCCATTAT+TGG | - | chr5.3:43350522-43350541 | None:intergenic | 30.0% | |
| TGCTCTTACATTAGAAAGTA+AGG | - | chr5.3:43350271-43350290 | None:intergenic | 30.0% | |
| TGGTGAGTAAAAATGGAATA+TGG | - | chr5.3:43350983-43351002 | None:intergenic | 30.0% | |
| TTCACGAGTTTATATTCTAC+TGG | - | chr5.3:43351443-43351462 | None:intergenic | 30.0% | |
| ! | ATATATTTTATCAGGCAGTC+GGG | - | chr5.3:43349235-43349254 | None:intergenic | 30.0% |
| ! | GTCTTGCATTTTCATTTATC+CGG | + | chr5.3:43349286-43349305 | MS.gene053903:intron | 30.0% |
| ! | TTTTTATTGTGGATGGATGT+TGG | - | chr5.3:43350728-43350747 | None:intergenic | 30.0% |
| ! | TTTTTCTCGGAAAAACAAAG+AGG | - | chr5.3:43350123-43350142 | None:intergenic | 30.0% |
| !! | ACTGTTTTAAATGAAGAGTG+GGG | - | chr5.3:43350595-43350614 | None:intergenic | 30.0% |
| !! | ATTCCTTAAAATGGTTTGCT+CGG | + | chr5.3:43349637-43349656 | MS.gene053903:intron | 30.0% |
| !! | TATTTTAAATCTGTGATGGG+TGG | + | chr5.3:43351630-43351649 | MS.gene053903:intron | 30.0% |
| !!! | ATTTTAAATCTGTGATGGGT+GGG | + | chr5.3:43351631-43351650 | MS.gene053903:intron | 30.0% |
| AACTCAGACTTGCAATAAAC+TGG | + | chr5.3:43351013-43351032 | MS.gene053903:intron | 35.0% | |
| AGCTGAACTATTTGCATTTC+AGG | - | chr5.3:43351042-43351061 | None:intergenic | 35.0% | |
| AGCTTATTAGGACTTAGACA+AGG | + | chr5.3:43349174-43349193 | MS.gene053903:CDS | 35.0% | |
| ATAGGTTAATGATGATAGGC+CGG | - | chr5.3:43349308-43349327 | None:intergenic | 35.0% | |
| ATTGCTCTGTCCATTCATAT+GGG | - | chr5.3:43349960-43349979 | None:intergenic | 35.0% | |
| CACGAATGTTAGTAAATCGA+AGG | - | chr5.3:43350947-43350966 | None:intergenic | 35.0% | |
| CGAGAAGAGGAAATTATAAC+AGG | + | chr5.3:43349884-43349903 | MS.gene053903:intron | 35.0% | |
| CTCAGGTAACATATAGTTGA+GGG | + | chr5.3:43351595-43351614 | MS.gene053903:intron | 35.0% | |
| GAAGTTCATTTACCTCATTG+TGG | - | chr5.3:43349932-43349951 | None:intergenic | 35.0% | |
| GATGGTTGGAAATTTCCAAA+TGG | + | chr5.3:43351838-43351857 | MS.gene053903:intron | 35.0% | |
| GCTTTAATGAAATGGACCTT+CGG | - | chr5.3:43349998-43350017 | None:intergenic | 35.0% | |
| GGTAGATTTCCTAGTATTTC+GGG | + | chr5.3:43351209-43351228 | MS.gene053903:CDS | 35.0% | |
| GTTTATATTCTACTGGTCAC+GGG | - | chr5.3:43351436-43351455 | None:intergenic | 35.0% | |
| TAGGCAACAATATGTAGGAA+AGG | + | chr5.3:43351188-43351207 | MS.gene053903:intron | 35.0% | |
| TCTCAGCAATTTATTACCGA+AGG | + | chr5.3:43349979-43349998 | MS.gene053903:intron | 35.0% | |
| TCTCAGGTAACATATAGTTG+AGG | + | chr5.3:43351594-43351613 | MS.gene053903:intron | 35.0% | |
| TGATGTATAATTTCTGTGGC+AGG | + | chr5.3:43349408-43349427 | MS.gene053903:intron | 35.0% | |
| TGCCACAGAAATTATACATC+AGG | - | chr5.3:43349409-43349428 | None:intergenic | 35.0% | |
| TTACCTCATTGTGGTTACTT+TGG | - | chr5.3:43349923-43349942 | None:intergenic | 35.0% | |
| TTCTTTATACTAGAGACCGT+AGG | - | chr5.3:43350497-43350516 | None:intergenic | 35.0% | |
| TTGTCGAATAGAGGTTATAG+TGG | + | chr5.3:43349782-43349801 | MS.gene053903:intron | 35.0% | |
| ! | CTGAGTTTGACTTCCTTATT+GGG | + | chr5.3:43350883-43350902 | MS.gene053903:intron | 35.0% |
| ! | TACCTCATTGTGGTTACTTT+GGG | - | chr5.3:43349922-43349941 | None:intergenic | 35.0% |
| ! | TCGAGTTTGGTGATAAATAC+TGG | - | chr5.3:43349204-43349223 | None:intergenic | 35.0% |
| ! | TCTGAGTTTGACTTCCTTAT+TGG | + | chr5.3:43350882-43350901 | MS.gene053903:intron | 35.0% |
| ! | TGATATGATTTGGCCCAATA+AGG | - | chr5.3:43350899-43350918 | None:intergenic | 35.0% |
| !! | ATAAAAGCATCCCAATCAAG+CGG | - | chr5.3:43351575-43351594 | None:intergenic | 35.0% |
| !! | CAGGCTTAGCTTTAATGAAA+TGG | - | chr5.3:43350006-43350025 | None:intergenic | 35.0% |
| !! | TTCCTTAAAATGGTTTGCTC+GGG | + | chr5.3:43349638-43349657 | MS.gene053903:intron | 35.0% |
| !!! | CACTGATTTTATACGAGAAG+AGG | + | chr5.3:43349871-43349890 | MS.gene053903:intron | 35.0% |
| AACCCTAAATGTAAGGCAAG+GGG | - | chr5.3:43351329-43351348 | None:intergenic | 40.0% | |
| ACATATCCTGCTTGCATTCA+AGG | - | chr5.3:43351688-43351707 | None:intergenic | 40.0% | |
| CAACCCTAAATGTAAGGCAA+GGG | - | chr5.3:43351330-43351349 | None:intergenic | 40.0% | |
| CAAGGACACATTTCATCACA+AGG | + | chr5.3:43351866-43351885 | MS.gene053903:CDS | 40.0% | |
| CAATGGCACTTTATCAATGG+CGG | - | chr5.3:43350471-43350490 | None:intergenic | 40.0% | |
| CATTCTGTATTGCCTGCAAA+TGG | + | chr5.3:43350289-43350308 | MS.gene053903:intron | 40.0% | |
| CTGCAATGGCACTTTATCAA+TGG | - | chr5.3:43350474-43350493 | None:intergenic | 40.0% | |
| GATAGTAGCAAAGTCTGTGA+TGG | - | chr5.3:43351534-43351553 | None:intergenic | 40.0% | |
| GATTGCTCTGTCCATTCATA+TGG | - | chr5.3:43349961-43349980 | None:intergenic | 40.0% | |
| GGAAAGCAACCCTAAATGTA+AGG | - | chr5.3:43351336-43351355 | None:intergenic | 40.0% | |
| GTGCTGCAAAGATTGAAGAA+GGG | + | chr5.3:43351888-43351907 | MS.gene053903:CDS | 40.0% | |
| TAAGACTGCAAAGGCCATAT+AGG | - | chr5.3:43349326-43349345 | None:intergenic | 40.0% | |
| TGGAAATTTCCAACCATCTG+TGG | - | chr5.3:43351836-43351855 | None:intergenic | 40.0% | |
| TGTGTCCTTGAGAAACCATT+TGG | - | chr5.3:43351856-43351875 | None:intergenic | 40.0% | |
| TGTTGCATGGCGTTATAGTA+CGG | + | chr5.3:43350367-43350386 | MS.gene053903:intron | 40.0% | |
| TTCCCAAAGTAACCACAATG+AGG | + | chr5.3:43349917-43349936 | MS.gene053903:intron | 40.0% | |
| TTGAAACCTTGAATGCAAGC+AGG | + | chr5.3:43351679-43351698 | MS.gene053903:intron | 40.0% | |
| TTGCGGATGGCGAAAAATAA+TGG | - | chr5.3:43349844-43349863 | None:intergenic | 40.0% | |
| TTGCTCTGTCCATTCATATG+GGG | - | chr5.3:43349959-43349978 | None:intergenic | 40.0% | |
| ! | ATGAACCCACATGGTTTTCT+TGG | + | chr5.3:43351234-43351253 | MS.gene053903:CDS | 40.0% |
| ! | GATTGGGATGCTTTTATCTC+AGG | + | chr5.3:43351578-43351597 | MS.gene053903:CDS | 40.0% |
| ! | GCAATGACACGTTTTTATGG+CGG | + | chr5.3:43350417-43350436 | MS.gene053903:intron | 40.0% |
| ! | GCCATAAAAACGTGTCATTG+CGG | - | chr5.3:43350418-43350437 | None:intergenic | 40.0% |
| ! | TTCCCGAGCAAACCATTTTA+AGG | - | chr5.3:43349643-43349662 | None:intergenic | 40.0% |
| !! | TTCCTCTGAGACGTAAGTTT+CGG | + | chr5.3:43349447-43349466 | MS.gene053903:intron | 40.0% |
| !!! | ACGTTTTTATGGCGGATTGT+TGG | + | chr5.3:43350425-43350444 | MS.gene053903:intron | 40.0% |
| AACCCCCTTGCCTTACATTT+AGG | + | chr5.3:43351323-43351342 | MS.gene053903:intron | 45.0% | |
| AATTTCTGTGGCAGGCTTAC+AGG | + | chr5.3:43349416-43349435 | MS.gene053903:intron | 45.0% | |
| ACCCCCTTGCCTTACATTTA+GGG | + | chr5.3:43351324-43351343 | MS.gene053903:intron | 45.0% | |
| ACCCTAAATGTAAGGCAAGG+GGG | - | chr5.3:43351328-43351347 | None:intergenic | 45.0% | |
| ACTTCAGACCCCCATATGAA+TGG | + | chr5.3:43349947-43349966 | MS.gene053903:intron | 45.0% | |
| AGCAGACCAAGAAAACCATG+TGG | - | chr5.3:43351243-43351262 | None:intergenic | 45.0% | |
| ATCCAGCTACTCTATAGCAC+CGG | - | chr5.3:43349715-43349734 | None:intergenic | 45.0% | |
| ATCCGAAACTTACGTCTCAG+AGG | - | chr5.3:43349452-43349471 | None:intergenic | 45.0% | |
| CTGCAGGAAAAAAAGCTGGT+AGG | + | chr5.3:43351261-43351280 | MS.gene053903:intron | 45.0% | |
| CTTGTATCGCTTCCATTTGC+AGG | - | chr5.3:43350304-43350323 | None:intergenic | 45.0% | |
| GCAAATGGAAGCGATACAAG+TGG | + | chr5.3:43350304-43350323 | MS.gene053903:intron | 45.0% | |
| GCAACCCTAAATGTAAGGCA+AGG | - | chr5.3:43351331-43351350 | None:intergenic | 45.0% | |
| GCAGACCAAGAAAACCATGT+GGG | - | chr5.3:43351242-43351261 | None:intergenic | 45.0% | |
| GGCACTGCAGAATTATTCAG+TGG | - | chr5.3:43350574-43350593 | None:intergenic | 45.0% | |
| GGTTCATTGCCCGAAATACT+AGG | - | chr5.3:43351221-43351240 | None:intergenic | 45.0% | |
| GTGAGTATCTCAACTCCTGT+TGG | + | chr5.3:43351391-43351410 | MS.gene053903:intron | 45.0% | |
| TACTGGTGTTCAGTGTTGCA+TGG | + | chr5.3:43350354-43350373 | MS.gene053903:intron | 45.0% | |
| TCAGTGTTGTCAATTGCGGA+TGG | - | chr5.3:43349857-43349876 | None:intergenic | 45.0% | |
| TCTGCTGCAGGAAAAAAAGC+TGG | + | chr5.3:43351257-43351276 | MS.gene053903:CDS | 45.0% | |
| TGCTCTGTCCATTCATATGG+GGG | - | chr5.3:43349958-43349977 | None:intergenic | 45.0% | |
| ! | GATTTTGTGCCAACTGCCAT+GGG | + | chr5.3:43350392-43350411 | MS.gene053903:intron | 45.0% |
| ! | GCCGCAATGACACGTTTTTA+TGG | + | chr5.3:43350414-43350433 | MS.gene053903:intron | 45.0% |
| ! | GGTGCTGCAAAGATTGAAGA+AGG | + | chr5.3:43351887-43351906 | MS.gene053903:CDS | 45.0% |
| ! | TAAAGTGCCATTGCAGCCTA+CGG | + | chr5.3:43350478-43350497 | MS.gene053903:intron | 45.0% |
| ! | TCGGGAACATACTTCGAGTT+TGG | - | chr5.3:43349217-43349236 | None:intergenic | 45.0% |
| ! | TCTACTGGTTGCCTTAAGCT+TGG | + | chr5.3:43350216-43350235 | MS.gene053903:intron | 45.0% |
| !! | ACTTTATCAATGGCGGATGG+CGG | - | chr5.3:43350464-43350483 | None:intergenic | 45.0% |
| !!! | ATATATAAATATATTTTATC+AGG | - | chr5.3:43349243-43349262 | None:intergenic | 5.0% |
| CAAATCGCGTGCCAAGCTTA+AGG | - | chr5.3:43350230-43350249 | None:intergenic | 50.0% | |
| GCAGTTGCAGTTGTGAAAGC+TGG | - | chr5.3:43351757-43351776 | None:intergenic | 50.0% | |
| TGCATGGCGTTATAGTACGG+TGG | + | chr5.3:43350370-43350389 | MS.gene053903:intron | 50.0% | |
| TTTCGGGCAATGAACCCACA+TGG | + | chr5.3:43351225-43351244 | MS.gene053903:CDS | 50.0% | |
| ! | ACATAGCCTGCCGCTTGATT+GGG | + | chr5.3:43351562-43351581 | MS.gene053903:CDS | 50.0% |
| ! | GGATGGTAGAGTACTTGCTG+TGG | + | chr5.3:43351465-43351484 | MS.gene053903:intron | 50.0% |
| ! | GGATTTTGTGCCAACTGCCA+TGG | + | chr5.3:43350391-43350410 | MS.gene053903:intron | 50.0% |
| ! | GGCACTTTATCAATGGCGGA+TGG | - | chr5.3:43350467-43350486 | None:intergenic | 50.0% |
| ! | TGGTTTTCTTGGTCTGCTGC+AGG | + | chr5.3:43351245-43351264 | MS.gene053903:CDS | 50.0% |
| !! | TACCGGTGCTATAGAGTAGC+TGG | + | chr5.3:43349710-43349729 | MS.gene053903:intron | 50.0% |
| AAGCATCCCAATCAAGCGGC+AGG | - | chr5.3:43351571-43351590 | None:intergenic | 55.0% | |
| ACCATCTGTGGCTGCTGATG+TGG | - | chr5.3:43351824-43351843 | None:intergenic | 55.0% | |
| CATCAGCAGCCACAGATGGT+TGG | + | chr5.3:43351824-43351843 | MS.gene053903:intron | 55.0% | |
| CTAGAGACCGTAGGCTGCAA+TGG | - | chr5.3:43350488-43350507 | None:intergenic | 55.0% | |
| TTTGCTGCATCTGCTGCTGC+TGG | - | chr5.3:43351721-43351740 | None:intergenic | 55.0% | |
| ! | AAACGTGTCATTGCGGCCCA+TGG | - | chr5.3:43350411-43350430 | None:intergenic | 55.0% |
| ! | GACATAGCCTGCCGCTTGAT+TGG | + | chr5.3:43351561-43351580 | MS.gene053903:CDS | 55.0% |
| ! | GCTTGGCACGCGATTTGTTC+TGG | + | chr5.3:43350233-43350252 | MS.gene053903:intron | 55.0% |
| !! | CAATGGCGGATGGCGGTTTA+AGG | - | chr5.3:43350457-43350476 | None:intergenic | 55.0% |
| GCCACATCAGCAGCCACAGA+TGG | + | chr5.3:43351820-43351839 | MS.gene053903:intron | 60.0% | |
| TCATTGCGGCCCATGGCAGT+TGG | - | chr5.3:43350404-43350423 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 43349165 | 43351925 | 43349165 | ID=MS.gene053903 |
| chr5.3 | mRNA | 43349165 | 43351925 | 43349165 | ID=MS.gene053903.t1;Parent=MS.gene053903 |
| chr5.3 | exon | 43349165 | 43349224 | 43349165 | ID=MS.gene053903.t1.exon1;Parent=MS.gene053903.t1 |
| chr5.3 | CDS | 43349165 | 43349224 | 43349165 | ID=cds.MS.gene053903.t1;Parent=MS.gene053903.t1 |
| chr5.3 | exon | 43349430 | 43349458 | 43349430 | ID=MS.gene053903.t1.exon2;Parent=MS.gene053903.t1 |
| chr5.3 | CDS | 43349430 | 43349458 | 43349430 | ID=cds.MS.gene053903.t1;Parent=MS.gene053903.t1 |
| chr5.3 | exon | 43351020 | 43351088 | 43351020 | ID=MS.gene053903.t1.exon3;Parent=MS.gene053903.t1 |
| chr5.3 | CDS | 43351020 | 43351088 | 43351020 | ID=cds.MS.gene053903.t1;Parent=MS.gene053903.t1 |
| chr5.3 | exon | 43351191 | 43351278 | 43351191 | ID=MS.gene053903.t1.exon4;Parent=MS.gene053903.t1 |
| chr5.3 | CDS | 43351191 | 43351278 | 43351191 | ID=cds.MS.gene053903.t1;Parent=MS.gene053903.t1 |
| chr5.3 | exon | 43351513 | 43351599 | 43351513 | ID=MS.gene053903.t1.exon5;Parent=MS.gene053903.t1 |
| chr5.3 | CDS | 43351513 | 43351599 | 43351513 | ID=cds.MS.gene053903.t1;Parent=MS.gene053903.t1 |
| chr5.3 | exon | 43351839 | 43351925 | 43351839 | ID=MS.gene053903.t1.exon6;Parent=MS.gene053903.t1 |
| chr5.3 | CDS | 43351839 | 43351925 | 43351839 | ID=cds.MS.gene053903.t1;Parent=MS.gene053903.t1 |
| Gene Sequence |
| Protein sequence |
