Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054006.t1 | XP_003597029.1 | 66.8 | 274 | 7 | 3 | 1 | 190 | 1 | 274 | 5.00E-82 | 313.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054006.t1 | Q9LSX7 | 75.3 | 170 | 26 | 2 | 37 | 190 | 113 | 282 | 7.2e-61 | 235.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054006.t1 | G7IKL0 | 66.8 | 274 | 7 | 3 | 1 | 190 | 1 | 274 | 3.6e-82 | 313.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054005 | MS.gene054006 | 0.834405 | 3.05E-56 | -1.69E-46 |
| MS.gene054006 | MS.gene35791 | 0.840392 | 8.94E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054006.t1 | MTR_2g088850 | 88.000 | 175 | 5 | 2 | 32 | 190 | 100 | 274 | 1.61e-104 | 301 |
| MS.gene054006.t1 | MTR_2g088850 | 91.176 | 34 | 3 | 0 | 1 | 34 | 1 | 34 | 3.56e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054006.t1 | AT3G21865 | 75.294 | 170 | 26 | 2 | 37 | 190 | 113 | 282 | 1.10e-83 | 249 |
Find 0 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAAACAATAAAAAAAT+GGG | - | 15117:2410-2429 | MS.gene054006:intergenic | 10.0% |
| !! | TAAGATAAACAATAAAAAAA+TGG | - | 15117:2411-2430 | MS.gene054006:intergenic | 10.0% |
| !!! | TTAAATTTTTAATCTACTTA+AGG | + | 15117:1804-1823 | MS.gene054006:intron | 10.0% |
| !! | TTATTGTTTATCTTAATAAG+TGG | + | 15117:2416-2435 | MS.gene054006:intron | 15.0% |
| !!! | TATTTTTTGTGATATATGAT+TGG | + | 15117:367-386 | MS.gene054006:intron | 15.0% |
| !!! | TTTTGTTAGAAACTTTAAAT+GGG | + | 15117:518-537 | MS.gene054006:intron | 15.0% |
| !!! | TTTTTGTTAGAAACTTTAAA+TGG | + | 15117:517-536 | MS.gene054006:intron | 15.0% |
| !! | AAACTATAAGAGAAACTATT+AGG | + | 15117:991-1010 | MS.gene054006:intron | 20.0% |
| !! | AATAAGATCTCATTACTTTA+GGG | + | 15117:2060-2079 | MS.gene054006:intron | 20.0% |
| !! | AATCATTCAATCAACAATAA+AGG | - | 15117:450-469 | MS.gene054006:intergenic | 20.0% |
| !! | AATTTCATATTCTGAATCTT+AGG | - | 15117:3084-3103 | MS.gene054006:intergenic | 20.0% |
| !! | ACCTACTATGTATTTAAATA+AGG | + | 15117:631-650 | MS.gene054006:intron | 20.0% |
| !! | AGTTATTTATTTAAAAGCGA+AGG | + | 15117:2120-2139 | MS.gene054006:intron | 20.0% |
| !! | ATATTCGTAACATTGAAAAA+TGG | - | 15117:2990-3009 | MS.gene054006:intergenic | 20.0% |
| !! | ATCATTCAATCAACAATAAA+GGG | - | 15117:449-468 | MS.gene054006:intergenic | 20.0% |
| !! | ATTAGAAAGAAACAATGATA+TGG | - | 15117:4851-4870 | MS.gene054006:intergenic | 20.0% |
| !! | ATTTCATATTCTGAATCTTA+GGG | - | 15117:3083-3102 | MS.gene054006:intergenic | 20.0% |
| !! | CAATAATTAGATAAGAGTAA+AGG | - | 15117:4052-4071 | MS.gene054006:intergenic | 20.0% |
| !! | CTATGTATTTAAATAAGGTA+TGG | + | 15117:636-655 | MS.gene054006:intron | 20.0% |
| !! | TAAAGCTATAAAAAAATACG+CGG | - | 15117:1548-1567 | MS.gene054006:intergenic | 20.0% |
| !! | TAATCTATAAAGCTATAAAC+AGG | - | 15117:1855-1874 | MS.gene054006:intergenic | 20.0% |
| !! | TAGAATCTATATATTTGTGA+AGG | + | 15117:4266-4285 | MS.gene054006:intron | 20.0% |
| !! | TATATGATATAGAACATGAT+GGG | + | 15117:1051-1070 | MS.gene054006:intron | 20.0% |
| !! | TCACAAAAGTTGTTTAAAAA+TGG | - | 15117:3164-3183 | MS.gene054006:intergenic | 20.0% |
| !! | TTACATTCTATCTTTATGTA+TGG | + | 15117:3636-3655 | MS.gene054006:intron | 20.0% |
| !!! | AAATGATCAATGTAATGTTT+TGG | + | 15117:675-694 | MS.gene054006:intron | 20.0% |
| !!! | AATTTAAACTCTAAAGACAA+TGG | - | 15117:1791-1810 | MS.gene054006:intergenic | 20.0% |
| !!! | ACCTTATTTAAATACATAGT+AGG | - | 15117:635-654 | MS.gene054006:intergenic | 20.0% |
| !!! | ATTCATTCCTCTTTTTTTTT+AGG | + | 15117:3382-3401 | MS.gene054006:intron | 20.0% |
| !!! | GAAATTTTGATATTTGTTGA+TGG | + | 15117:412-431 | MS.gene054006:intron | 20.0% |
| !!! | TAAAACAAAAGTATACGAAA+AGG | - | 15117:2710-2729 | MS.gene054006:intergenic | 20.0% |
| !!! | TAATGTTTTGGTCTTTTTTT+TGG | + | 15117:687-706 | MS.gene054006:intron | 20.0% |
| !!! | TCACAAAAGTTGTTTAAAAT+TGG | + | 15117:3349-3368 | MS.gene054006:intron | 20.0% |
| !!! | TCTAAAGGTAATCTTTAAAA+TGG | - | 15117:4024-4043 | MS.gene054006:intergenic | 20.0% |
| !!! | TTATTGTTGATTGAATGATT+AGG | + | 15117:450-469 | MS.gene054006:intron | 20.0% |
| !!! | TTCATTCCTCTTTTTTTTTA+GGG | + | 15117:3383-3402 | MS.gene054006:intron | 20.0% |
| ! | AAAACAAACTTTCACTCTTT+AGG | - | 15117:499-518 | MS.gene054006:intergenic | 25.0% |
| ! | AAAAGTAGAAAAATTGTCCT+TGG | - | 15117:2346-2365 | MS.gene054006:intergenic | 25.0% |
| ! | AATAACCATAAAACTAAGTC+TGG | - | 15117:1705-1724 | MS.gene054006:intergenic | 25.0% |
| ! | AATGATTCTGTAAAAATGAC+TGG | + | 15117:3023-3042 | MS.gene054006:intron | 25.0% |
| ! | AATTCTGAATCATTAAGCAA+AGG | - | 15117:1493-1512 | MS.gene054006:intergenic | 25.0% |
| ! | AGTATCAGTTTATATTTCCA+AGG | + | 15117:2326-2345 | MS.gene054006:intron | 25.0% |
| ! | ATAAGATCTCATTACTTTAG+GGG | + | 15117:2061-2080 | MS.gene054006:intron | 25.0% |
| ! | ATGATTCTGTAAAAATGACT+GGG | + | 15117:3024-3043 | MS.gene054006:intron | 25.0% |
| ! | ATTCTGTGATTTATATCTCA+TGG | + | 15117:2837-2856 | MS.gene054006:CDS | 25.0% |
| ! | ATTTCTCCCTAAAAAAAAAG+AGG | - | 15117:3392-3411 | MS.gene054006:intergenic | 25.0% |
| ! | CAATAAGATCTCATTACTTT+AGG | + | 15117:2059-2078 | MS.gene054006:intron | 25.0% |
| ! | CATGATGAGTGATTAATATA+TGG | - | 15117:2905-2924 | MS.gene054006:intergenic | 25.0% |
| ! | CTATGTTTATGTTTCTCTTT+AGG | + | 15117:2173-2192 | MS.gene054006:intron | 25.0% |
| ! | GACTTGTAGATTATGTATTA+AGG | + | 15117:914-933 | MS.gene054006:intron | 25.0% |
| ! | GTATATGATATAGAACATGA+TGG | + | 15117:1050-1069 | MS.gene054006:intron | 25.0% |
| ! | TAAATAAGGTATGGTTAAGT+TGG | + | 15117:645-664 | MS.gene054006:intron | 25.0% |
| ! | TAAGGTTAAATTAACATGTC+TGG | + | 15117:1822-1841 | MS.gene054006:intron | 25.0% |
| ! | TAGAATTTAATTACCATGCA+AGG | + | 15117:4190-4209 | MS.gene054006:intron | 25.0% |
| ! | TATCAAAATAGAGGACAAAA+AGG | - | 15117:4637-4656 | MS.gene054006:intergenic | 25.0% |
| ! | TCCAATAGAATGATGAAAAA+AGG | - | 15117:315-334 | MS.gene054006:intergenic | 25.0% |
| ! | TGAGATGTTACAAAATTAGA+TGG | + | 15117:4492-4511 | MS.gene054006:intron | 25.0% |
| !! | AAGGACAATTTTTCTACTTT+TGG | + | 15117:2345-2364 | MS.gene054006:intron | 25.0% |
| !! | AGTTTCTCTTATAGTTTTTC+AGG | - | 15117:988-1007 | MS.gene054006:intergenic | 25.0% |
| !! | ATCTTAGGGTAAGATATTTT+TGG | - | 15117:3069-3088 | MS.gene054006:intergenic | 25.0% |
| !! | ATTCCAATCATATTTTACCA+TGG | - | 15117:4323-4342 | MS.gene054006:intergenic | 25.0% |
| !! | TATGTTTCTCTTTAGGTTAA+AGG | + | 15117:2180-2199 | MS.gene054006:intron | 25.0% |
| !! | TTTATGATCTTTTCCTAGTT+TGG | + | 15117:3455-3474 | MS.gene054006:intron | 25.0% |
| !!! | ATCATAAGAAATGTCGATTT+GGG | + | 15117:1759-1778 | MS.gene054006:intron | 25.0% |
| !!! | CAGATATTGTACTTGTTATT+AGG | + | 15117:1204-1223 | MS.gene054006:intron | 25.0% |
| !!! | GATATTTGTTGATGGATTTT+TGG | + | 15117:420-439 | MS.gene054006:intron | 25.0% |
| !!! | GTCATTTTTACAGAATCATT+CGG | - | 15117:3023-3042 | MS.gene054006:intergenic | 25.0% |
| !!! | TATAGATTCTAGTTCTAGAT+AGG | - | 15117:4257-4276 | MS.gene054006:intergenic | 25.0% |
| AAACATAAGTATGCAGCAAT+CGG | - | 15117:4606-4625 | MS.gene054005:intergenic | 30.0% | |
| AAATGGTAAAGATGTTTCTC+AGG | - | 15117:4007-4026 | MS.gene054005:intergenic | 30.0% | |
| AACAACATTAAAGAGAGAGT+TGG | + | 15117:821-840 | MS.gene054006:intron | 30.0% | |
| AACTTATTGGTCATAATAGC+CGG | - | 15117:2611-2630 | MS.gene054006:intergenic | 30.0% | |
| AATCATTAAGCAAAGGAAAG+TGG | - | 15117:1486-1505 | MS.gene054006:intergenic | 30.0% | |
| ACAACATTAAAGAGAGAGTT+GGG | + | 15117:822-841 | MS.gene054006:intron | 30.0% | |
| ACACCATGGTAAAATATGAT+TGG | + | 15117:4317-4336 | MS.gene054006:intron | 30.0% | |
| AGATCTAGAGATTAATGAGT+TGG | + | 15117:1016-1035 | MS.gene054006:intron | 30.0% | |
| AGTATAAAAAAGTAGTGCAC+AGG | - | 15117:4346-4365 | MS.gene054006:intergenic | 30.0% | |
| ATAAAACATCATACCTTGAC+TGG | - | 15117:1455-1474 | MS.gene054006:intergenic | 30.0% | |
| ATAGTAACATACAGCTAACT+GGG | - | 15117:4769-4788 | MS.gene054006:intergenic | 30.0% | |
| ATCATTAAGCAAAGGAAAGT+GGG | - | 15117:1485-1504 | MS.gene054006:intergenic | 30.0% | |
| ATGACCAATAAGTTGTATGT+AGG | + | 15117:2617-2636 | MS.gene054006:intron | 30.0% | |
| ATTAAGGAGAGTAGATTAGA+TGG | + | 15117:930-949 | MS.gene054006:intron | 30.0% | |
| ATTAGGATATTCGCACTATT+GGG | + | 15117:1221-1240 | MS.gene054006:intron | 30.0% | |
| CACACACTTCGTATTTATAA+TGG | - | 15117:1979-1998 | MS.gene054006:intergenic | 30.0% | |
| CTTTACCTTCAGATGAATTA+CGG | + | 15117:1399-1418 | MS.gene054006:intron | 30.0% | |
| GTCTTATGTAATGAACTTGA+TGG | + | 15117:2924-2943 | MS.gene054006:intron | 30.0% | |
| TATAGTAACATACAGCTAAC+TGG | - | 15117:4770-4789 | MS.gene054006:intergenic | 30.0% | |
| TATTAGGATATTCGCACTAT+TGG | + | 15117:1220-1239 | MS.gene054006:intron | 30.0% | |
| TTCGAACTAAATTTGATCTC+AGG | + | 15117:3562-3581 | MS.gene054006:intron | 30.0% | |
| TTTACCTTCAGATGAATTAC+GGG | + | 15117:1400-1419 | MS.gene054006:intron | 30.0% | |
| ! | AAATGAGCTTTTATGTGTCA+TGG | + | 15117:580-599 | MS.gene054006:intron | 30.0% |
| ! | GATCATAAGAAATGTCGATT+TGG | + | 15117:1758-1777 | MS.gene054006:intron | 30.0% |
| ! | TAATGAGTTGGATCGAAATA+TGG | + | 15117:1028-1047 | MS.gene054006:intron | 30.0% |
| ! | TGTCATGGTTTTTGTCAAAT+TGG | + | 15117:595-614 | MS.gene054006:intron | 30.0% |
| ! | TTAAACTCTAAAGACAATGG+TGG | - | 15117:1788-1807 | MS.gene054006:intergenic | 30.0% |
| !! | GGATTATTTCTGCAGAAAAA+AGG | + | 15117:3657-3676 | MS.gene054006:intron | 30.0% |
| !! | TCTTTTTCGTCTCTTCTTAT+TGG | - | 15117:3326-3345 | MS.gene054006:intergenic | 30.0% |
| !!! | CATAGCTTGTATTTTAAAGC+TGG | - | 15117:2158-2177 | MS.gene054006:intergenic | 30.0% |
| !!! | GCCTTTTTTCATCATTCTAT+TGG | + | 15117:311-330 | MS.gene054006:intron | 30.0% |
| !!! | GCTTTTGTTACTTTCAAGAT+CGG | + | 15117:239-258 | MS.gene054006:CDS | 30.0% |
| !!! | GGGTTTTTTTCGTTTAATGT+GGG | + | 15117:538-557 | MS.gene054006:intron | 30.0% |
| !!! | TGGGTTTTTTTCGTTTAATG+TGG | + | 15117:537-556 | MS.gene054006:intron | 30.0% |
| !!! | TGTGCACTACTTTTTTATAC+TGG | + | 15117:4345-4364 | MS.gene054006:intron | 30.0% |
| !!! | TTTTGGAGCATGTGTAAATA+AGG | + | 15117:704-723 | MS.gene054006:intron | 30.0% |
| AACAACAAATCATGTTGCAG+AGG | + | 15117:4875-4894 | MS.gene054006:intron | 35.0% | |
| AATAAACCGTCATCATGACT+AGG | + | 15117:4140-4159 | MS.gene054006:intron | 35.0% | |
| ACTTATTGGTCATAATAGCC+GGG | - | 15117:2610-2629 | MS.gene054006:intergenic | 35.0% | |
| AGAGTAAAGGTTCTCTCTAA+AGG | - | 15117:4039-4058 | MS.gene054006:intergenic | 35.0% | |
| AGTATTATAACACGACACCA+TGG | + | 15117:4303-4322 | MS.gene054006:intron | 35.0% | |
| ATAAACCGTCATCATGACTA+GGG | + | 15117:4141-4160 | MS.gene054006:intron | 35.0% | |
| ATCCACAAACATTCATGCAT+TGG | - | 15117:1519-1538 | MS.gene054006:intergenic | 35.0% | |
| ATGCACTCTTTATGTAGTAG+TGG | + | 15117:1671-1690 | MS.gene054006:intron | 35.0% | |
| ATTGGTTAAGCAGCTAAAAG+AGG | + | 15117:2260-2279 | MS.gene054006:intron | 35.0% | |
| CAACATTAAAGAGAGAGTTG+GGG | + | 15117:823-842 | MS.gene054006:intron | 35.0% | |
| CAAGTACAATATCTGAGCTT+TGG | - | 15117:1199-1218 | MS.gene054006:intergenic | 35.0% | |
| CATGCAAGGACAATGTAAAA+GGG | + | 15117:4204-4223 | MS.gene054006:intron | 35.0% | |
| CCAAAGAAAAGTTCCAAAGA+TGG | - | 15117:4970-4989 | MS.gene054006:intergenic | 35.0% | |
| CTGTAAAAATGACTGGGATA+TGG | + | 15117:3030-3049 | MS.gene054006:intron | 35.0% | |
| GATATAGTTGCGTATAAACC+TGG | + | 15117:2503-2522 | MS.gene054006:intron | 35.0% | |
| GATTGAATGATTAGGAACCA+GGG | + | 15117:458-477 | MS.gene054006:intron | 35.0% | |
| GGTATGGGATATCAAAATAG+AGG | - | 15117:4646-4665 | MS.gene054006:intergenic | 35.0% | |
| GTAAACTACAGCACACTAAA+AGG | - | 15117:3875-3894 | MS.gene054006:intergenic | 35.0% | |
| GTCACCTACATACAACTTAT+TGG | - | 15117:2624-2643 | MS.gene054006:intergenic | 35.0% | |
| GTGATTTATATCTCATGGAC+CGG | + | 15117:2842-2861 | MS.gene054006:CDS | 35.0% | |
| TGACAAGATATAACTCTTGC+AGG | - | 15117:4470-4489 | MS.gene054006:intergenic | 35.0% | |
| TGATTGAATGATTAGGAACC+AGG | + | 15117:457-476 | MS.gene054006:intron | 35.0% | |
| TGATTTATATCTCATGGACC+GGG | + | 15117:2843-2862 | MS.gene054006:CDS | 35.0% | |
| TTAGGATATTCGCACTATTG+GGG | + | 15117:1222-1241 | MS.gene054006:intron | 35.0% | |
| TTCGTCAATTAGAACCAGAT+TGG | + | 15117:4715-4734 | MS.gene054006:CDS | 35.0% | |
| TTTGACTGTGAACATTTGCA+CGG | + | 15117:3958-3977 | MS.gene054006:intron | 35.0% | |
| TTTGTTTGACCTATGTTTCC+CGG | + | 15117:2589-2608 | MS.gene054006:intron | 35.0% | |
| ! | AGGAGATGGTAATTTCTAGA+AGG | - | 15117:1736-1755 | MS.gene054006:intergenic | 35.0% |
| ! | ATATGTTTGTTGCCATTTGC+TGG | + | 15117:4397-4416 | MS.gene054006:intron | 35.0% |
| ! | CATGGTTTTTGTCAAATTGG+AGG | + | 15117:598-617 | MS.gene054006:intron | 35.0% |
| ! | GCAGTTCGTTCTGTTTTATA+AGG | - | 15117:4928-4947 | MS.gene054006:intergenic | 35.0% |
| ! | GCTACAGATCACAATTTTGT+CGG | - | 15117:4529-4548 | MS.gene054006:intergenic | 35.0% |
| ! | TAATTAGTAAGCACTAGCCT+AGG | - | 15117:1931-1950 | MS.gene054006:intergenic | 35.0% |
| ! | TTTTCGTTTAATGTGGGTGT+GGG | + | 15117:544-563 | MS.gene054006:intron | 35.0% |
| ! | TTTTCTTTGGATCCACATGA+GGG | + | 15117:4980-4999 | MS.gene054006:CDS | 35.0% |
| ! | TTTTTCGTTTAATGTGGGTG+TGG | + | 15117:543-562 | MS.gene054006:intron | 35.0% |
| !! | TGGTGTCGTGTTATAATACT+TGG | - | 15117:4303-4322 | MS.gene054006:intergenic | 35.0% |
| !!! | AATTTTTTCAGCCAACCTTG+GGG | + | 15117:1592-1611 | MS.gene054006:intron | 35.0% |
| !!! | CATCAGAATTTTAGGTTCCA+AGG | - | 15117:4447-4466 | MS.gene054006:intergenic | 35.0% |
| !!! | CCATCTTTGGAACTTTTCTT+TGG | + | 15117:4967-4986 | MS.gene054006:CDS | 35.0% |
| !!! | GAATTTTTTCAGCCAACCTT+GGG | + | 15117:1591-1610 | MS.gene054006:intron | 35.0% |
| !!! | GTGTTCCAGACTTAGTTTTA+TGG | + | 15117:1697-1716 | MS.gene054006:intron | 35.0% |
| !!! | TGAATTTTTTCAGCCAACCT+TGG | + | 15117:1590-1609 | MS.gene054006:intron | 35.0% |
| AAGTTAACCACCTTCTTGCT+GGG | + | 15117:3783-3802 | MS.gene054006:intron | 40.0% | |
| AGAGAACCTGCATATAGGTA+TGG | - | 15117:4662-4681 | MS.gene054006:intergenic | 40.0% | |
| AGAGTAGCAAGAGGAATACT+AGG | - | 15117:3588-3607 | MS.gene054006:intergenic | 40.0% | |
| AGATCTCCTAATCCTACACA+AGG | + | 15117:1291-1310 | MS.gene054006:intron | 40.0% | |
| AGCCAATGCATGAATGTTTG+TGG | + | 15117:1514-1533 | MS.gene054006:intron | 40.0% | |
| AGCTAACTGGGTGACAATTT+CGG | - | 15117:4757-4776 | MS.gene054006:intergenic | 40.0% | |
| AGGAGAGTAGATTAGATGGA+AGG | + | 15117:934-953 | MS.gene054006:intron | 40.0% | |
| AGTTGCGTATAAACCTGGAT+GGG | + | 15117:2508-2527 | MS.gene054006:intron | 40.0% | |
| ATGAAAAAAGGCAGAGAGAG+AGG | - | 15117:303-322 | MS.gene054006:intergenic | 40.0% | |
| ATGTAGCTAATCCCACTTAG+TGG | + | 15117:1087-1106 | MS.gene054006:intron | 40.0% | |
| ATTGAATTTGTGCTAGCTCC+AGG | - | 15117:1354-1373 | MS.gene054006:intergenic | 40.0% | |
| CAACAATACTTCTAGCACAG+AGG | - | 15117:2806-2825 | MS.gene054006:intergenic | 40.0% | |
| CAGTATGTGTGTTCCAAACT+AGG | - | 15117:3471-3490 | MS.gene054006:intergenic | 40.0% | |
| CCATGCAAGGACAATGTAAA+AGG | + | 15117:4203-4222 | MS.gene054006:intron | 40.0% | |
| CCTAGAGTATACAACTTCCT+AGG | + | 15117:1911-1930 | MS.gene054006:intron | 40.0% | |
| CCTAGGAAGTTGTATACTCT+AGG | - | 15117:1914-1933 | MS.gene054006:intergenic | 40.0% | |
| CTAGCACAAATTCAATGCGT+CGG | + | 15117:1358-1377 | MS.gene054006:intron | 40.0% | |
| GAAGTTGAGTGAAGGAAGAA+AGG | + | 15117:1629-1648 | MS.gene054006:CDS | 40.0% | |
| GAGAACCTGCATATAGGTAT+GGG | - | 15117:4661-4680 | MS.gene054006:intergenic | 40.0% | |
| GATATCCCATACCTATATGC+AGG | + | 15117:4653-4672 | MS.gene054006:intron | 40.0% | |
| GATCTCCTAATCCTACACAA+GGG | + | 15117:1292-1311 | MS.gene054006:intron | 40.0% | |
| GATTTATATCTCATGGACCG+GGG | + | 15117:2844-2863 | MS.gene054006:CDS | 40.0% | |
| GGTTGTTAATTATCCAACCC+TGG | - | 15117:478-497 | MS.gene054006:intergenic | 40.0% | |
| TAATCCCACTTAGTGGGATA+AGG | + | 15117:1094-1113 | MS.gene054006:intron | 40.0% | |
| TAGTTGCGTATAAACCTGGA+TGG | + | 15117:2507-2526 | MS.gene054006:intron | 40.0% | |
| TCATAATAGCCGGGAAACAT+AGG | - | 15117:2601-2620 | MS.gene054006:intergenic | 40.0% | |
| TCGACATTTCTTATGATCGC+AGG | - | 15117:1756-1775 | MS.gene054006:intergenic | 40.0% | |
| TGTAGCTAATCCCACTTAGT+GGG | + | 15117:1088-1107 | MS.gene054006:intron | 40.0% | |
| TTGTAGCGTTAGAAGAAGCA+GGG | + | 15117:3682-3701 | MS.gene054006:CDS | 40.0% | |
| TTTCACCTCATCAAACGCTT+TGG | + | 15117:215-234 | MS.gene054006:CDS | 40.0% | |
| TTTCTTATGATCGCAGGAGA+TGG | - | 15117:1750-1769 | MS.gene054006:intergenic | 40.0% | |
| ! | CCTTTTACATTGTCCTTGCA+TGG | - | 15117:4206-4225 | MS.gene054006:intergenic | 40.0% |
| ! | CTTGCAGGCATCAGAATTTT+AGG | - | 15117:4455-4474 | MS.gene054006:intergenic | 40.0% |
| ! | CTTTTCTTTGGATCCACATG+AGG | + | 15117:4979-4998 | MS.gene054006:CDS | 40.0% |
| ! | GTTGCGATTGTTTTCACTTG+AGG | + | 15117:1262-1281 | MS.gene054006:intron | 40.0% |
| ! | TGGGAATACTTGATGACATG+AGG | + | 15117:2527-2546 | MS.gene054006:intron | 40.0% |
| ! | TTTGTGTCGATATGCCAATC+TGG | - | 15117:4732-4751 | MS.gene054006:intergenic | 40.0% |
| !! | ACTAAGTGGGATTAGCTACA+TGG | - | 15117:1088-1107 | MS.gene054006:intergenic | 40.0% |
| !! | CTCTGTGCTAGAAGTATTGT+TGG | + | 15117:2804-2823 | MS.gene054006:CDS | 40.0% |
| !! | CTGTTTTATAAGGCGCTATG+TGG | - | 15117:4918-4937 | MS.gene054006:intergenic | 40.0% |
| !! | GAAGGTAAAGAAGCATCAGA+AGG | - | 15117:1389-1408 | MS.gene054006:intergenic | 40.0% |
| !! | TGCTCTTTTCAAGACATCCT+TGG | + | 15117:4427-4446 | MS.gene054006:intron | 40.0% |
| ACCAATGGGAGAAAAGATGG+TGG | + | 15117:850-869 | MS.gene054006:intron | 45.0% | |
| AGACCATGCTTAGGTGGTTT+GGG | + | 15117:873-892 | MS.gene054006:intron | 45.0% | |
| AGCACCAATGGGAGAAAAGA+TGG | + | 15117:847-866 | MS.gene054006:intron | 45.0% | |
| AGCGTTTGATGAGGTGAAAG+AGG | - | 15117:214-233 | MS.gene054006:intergenic | 45.0% | |
| AGTCAGATCACTAGTGGTAG+AGG | + | 15117:958-977 | MS.gene054006:intron | 45.0% | |
| CTTGTAGCGTTAGAAGAAGC+AGG | + | 15117:3681-3700 | MS.gene054006:CDS | 45.0% | |
| GAAGGTAGTCAGATCACTAG+TGG | + | 15117:952-971 | MS.gene054006:intron | 45.0% | |
| GAAGTTAACCACCTTCTTGC+TGG | + | 15117:3782-3801 | MS.gene054006:intron | 45.0% | |
| GAATGATTAGGAACCAGGGT+TGG | + | 15117:462-481 | MS.gene054006:intron | 45.0% | |
| GAGCATATACAGCCAGCAAA+TGG | - | 15117:4412-4431 | MS.gene054006:intergenic | 45.0% | |
| GCTAACTGGGTGACAATTTC+GGG | - | 15117:4756-4775 | MS.gene054006:intergenic | 45.0% | |
| GCTGAAGAGAACCTGCATAT+AGG | - | 15117:4667-4686 | MS.gene054006:intergenic | 45.0% | |
| GGTATTCACTTCAGGTGGTT+TGG | + | 15117:3704-3723 | MS.gene054006:CDS | 45.0% | |
| GTCATCAAGTATTCCCATCC+AGG | - | 15117:2524-2543 | MS.gene054006:intergenic | 45.0% | |
| GTCTTCTTGGAGTGATCTTG+AGG | + | 15117:2649-2668 | MS.gene054006:CDS | 45.0% | |
| TCTTGAGGAAAGTAGTCCAG+AGG | + | 15117:2664-2683 | MS.gene054006:intron | 45.0% | |
| TGAGTTCTTTCAGCCAGTCA+AGG | + | 15117:1439-1458 | MS.gene054006:CDS | 45.0% | |
| TGCTACAACAGAGTAGCAAG+AGG | - | 15117:3597-3616 | MS.gene054006:intergenic | 45.0% | |
| TGTAGCGTTAGAAGAAGCAG+GGG | + | 15117:3683-3702 | MS.gene054006:CDS | 45.0% | |
| TGTGCCCGTAATTCATCTGA+AGG | - | 15117:1407-1426 | MS.gene054006:intergenic | 45.0% | |
| TGTGTTCAGTGCTCCATCTT+TGG | + | 15117:4954-4973 | MS.gene054006:CDS | 45.0% | |
| TTAGTGGGATAAGGCTCTCT+TGG | + | 15117:1103-1122 | MS.gene054006:intron | 45.0% | |
| ! | AAGCACCAAAGCGTTTGATG+AGG | - | 15117:223-242 | MS.gene054006:intergenic | 45.0% |
| ! | AGAGCCTTATCCCACTAAGT+GGG | - | 15117:1101-1120 | MS.gene054006:intergenic | 45.0% |
| ! | TCCACCATCTTTTCTCCCAT+TGG | - | 15117:854-873 | MS.gene054006:intergenic | 45.0% |
| !! | AGGTGGTTTGGTTAAGGACA+AGG | + | 15117:3716-3735 | MS.gene054006:CDS | 45.0% |
| !! | CACTTCAGGTGGTTTGGTTA+AGG | + | 15117:3710-3729 | MS.gene054006:CDS | 45.0% |
| !! | GAGGTGAAAGAGGTCTTGTT+TGG | - | 15117:204-223 | MS.gene054006:intergenic | 45.0% |
| !! | GTGAAAGAGGTCTTGTTTGG+AGG | - | 15117:201-220 | MS.gene054006:intergenic | 45.0% |
| !! | TGGAGCACTGAACACATTAG+CGG | - | 15117:4950-4969 | MS.gene054006:intergenic | 45.0% |
| !!! | TTAATTTGTTATATTTTTTT+AGG | + | 15117:2211-2230 | MS.gene054006:intron | 5.0% |
| AAGTAGTCCAGAGGAGCTTC+AGG | + | 15117:2673-2692 | MS.gene054006:intron | 50.0% | |
| AGAATGTTAACCAGTGCCCC+CGG | + | 15117:2234-2253 | MS.gene054006:intron | 50.0% | |
| AGAGTTGGGGTAGCACCAAT+GGG | + | 15117:836-855 | MS.gene054006:intron | 50.0% | |
| ATCCTACACAAGGGAGGCAA+CGG | + | 15117:1301-1320 | MS.gene054006:intron | 50.0% | |
| ATCGTTGTCACCACCAGACA+CGG | - | 15117:174-193 | MS.gene054006:intergenic | 50.0% | |
| ATGCCCAAACCACCTAAGCA+TGG | - | 15117:879-898 | MS.gene054006:intergenic | 50.0% | |
| ATTCCTTAACAAGTGCCCCG+GGG | + | 15117:2368-2387 | MS.gene054006:intron | 50.0% | |
| CTCCTAATCCTACACAAGGG+AGG | + | 15117:1295-1314 | MS.gene054006:intron | 50.0% | |
| GAGACCATGCTTAGGTGGTT+TGG | + | 15117:872-891 | MS.gene054006:intron | 50.0% | |
| GATCACTCCAAGAAGACGAC+AGG | - | 15117:2646-2665 | MS.gene054006:intergenic | 50.0% | |
| GATTCCTTAACAAGTGCCCC+GGG | + | 15117:2367-2386 | MS.gene054006:intron | 50.0% | |
| GGATATTCGCACTATTGGGG+CGG | + | 15117:1225-1244 | MS.gene054006:intron | 50.0% | |
| GGATTCCTTAACAAGTGCCC+CGG | + | 15117:2366-2385 | MS.gene054006:intron | 50.0% | |
| GGTGGTGCATCTAGTAATCC+TGG | + | 15117:1333-1352 | MS.gene054006:intron | 50.0% | |
| GTGAGGCAGAAGTTGAGTGA+AGG | + | 15117:1621-1640 | MS.gene054006:CDS | 50.0% | |
| TAGCTGCTTAACCAATGCCC+CGG | - | 15117:2256-2275 | MS.gene054006:intergenic | 50.0% | |
| TAGGTGACCTGTCGTCTTCT+TGG | + | 15117:2636-2655 | MS.gene054006:intron | 50.0% | |
| TGCCTCCCTTGTGTAGGATT+AGG | - | 15117:1300-1319 | MS.gene054006:intergenic | 50.0% | |
| TGTGGGTGTGGGTAGAAACT+AGG | + | 15117:555-574 | MS.gene054006:intron | 50.0% | |
| TTTCACACCTGAAGCTCCTC+TGG | - | 15117:2683-2702 | MS.gene054006:intergenic | 50.0% | |
| ! | CTCTTCAGCAGCACTGAGAA+TGG | + | 15117:4678-4697 | MS.gene054006:CDS | 50.0% |
| ! | GAGAGCCTTATCCCACTAAG+TGG | - | 15117:1102-1121 | MS.gene054006:intergenic | 50.0% |
| !! | AGATGGTGGAGACCATGCTT+AGG | + | 15117:864-883 | MS.gene054006:intron | 50.0% |
| !! | GAAGCAGGGGTATTCACTTC+AGG | + | 15117:3696-3715 | MS.gene054006:CDS | 50.0% |
| AACACTGCCCAGCAAGAAGG+TGG | - | 15117:3793-3812 | MS.gene054006:intergenic | 55.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | + | 15117:2236-2255 | MS.gene054006:intron | 55.0% | |
| AGCTGCTTAACCAATGCCCC+GGG | - | 15117:2255-2274 | MS.gene054006:intergenic | 55.0% | |
| AGGCAACGGAAAAGGCAAGG+TGG | + | 15117:1315-1334 | MS.gene054006:intron | 55.0% | |
| CAACCTTGGGGCAGATAGTG+AGG | + | 15117:1604-1623 | MS.gene054006:CDS | 55.0% | |
| CACAAGGGAGGCAACGGAAA+AGG | + | 15117:1307-1326 | MS.gene054006:intron | 55.0% | |
| CTCACTATCTGCCCCAAGGT+TGG | - | 15117:1606-1625 | MS.gene054006:intergenic | 55.0% | |
| GAATGTTAACCAGTGCCCCC+GGG | + | 15117:2235-2254 | MS.gene054006:intron | 55.0% | |
| GAGAGGAGAGAGAGAGAGAG+AGG | - | 15117:286-305 | MS.gene054006:intergenic | 55.0% | |
| GAGAGTTGGGGTAGCACCAA+TGG | + | 15117:835-854 | MS.gene054006:intron | 55.0% | |
| GCTTTCGTCATCCAGAACCC+CGG | - | 15117:2864-2883 | MS.gene054006:intergenic | 55.0% | |
| TATCTCATGGACCGGGGTTC+TGG | + | 15117:2850-2869 | MS.gene054006:intron | 55.0% | |
| TCTTGTTAACCAGTGCCCCC+GGG | - | 15117:2387-2406 | MS.gene054006:intergenic | 55.0% | |
| TGCAACACTGCCCAGCAAGA+AGG | - | 15117:3796-3815 | MS.gene054006:intergenic | 55.0% | |
| TGGTGGAGACCATGCTTAGG+TGG | + | 15117:867-886 | MS.gene054006:intron | 55.0% | |
| TTCCGTTGCCTCCCTTGTGT+AGG | - | 15117:1306-1325 | MS.gene054006:intergenic | 55.0% | |
| TTCCTTAACAAGTGCCCCGG+GGG | + | 15117:2369-2388 | MS.gene054006:intron | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+CGG | - | 15117:2388-2407 | MS.gene054006:intergenic | 55.0% |
| !! | GCAGGGGTATTCACTTCAGG+TGG | + | 15117:3699-3718 | MS.gene054006:CDS | 55.0% |
| !! | GGTTCTGGATGACGAAAGCG+AGG | + | 15117:2865-2884 | MS.gene054006:intron | 55.0% |
| CTGCCTCACTATCTGCCCCA+AGG | - | 15117:1610-1629 | MS.gene054006:intergenic | 60.0% | |
| CTGCTTAACCAATGCCCCGG+GGG | - | 15117:2253-2272 | MS.gene054006:intergenic | 60.0% | |
| CTTGTTAACCAGTGCCCCCG+GGG | - | 15117:2386-2405 | MS.gene054006:intergenic | 60.0% | |
| GCTGCTTAACCAATGCCCCG+GGG | - | 15117:2254-2273 | MS.gene054006:intergenic | 60.0% | |
| GGGAGGCAACGGAAAAGGCA+AGG | + | 15117:1312-1331 | MS.gene054006:intron | 60.0% | |
| CGCACTATTGGGGCGGTAGC+TGG | + | 15117:1232-1251 | MS.gene054006:intron | 65.0% | |
| ! | TGCCCCCGGGGCACTTGTTA+AGG | - | 15117:2374-2393 | MS.gene054006:intergenic | 65.0% |
| AACCAGTGCCCCCGGGGCAT+TGG | + | 15117:2242-2261 | MS.gene054006:intron | 70.0% | |
| ! | AACAAGTGCCCCGGGGGCAC+TGG | + | 15117:2375-2394 | MS.gene054006:intron | 70.0% |
| ! | AACCAATGCCCCGGGGGCAC+TGG | - | 15117:2247-2266 | MS.gene054006:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15117 | gene | 167 | 4999 | 167 | ID=MS.gene054006 |
| 15117 | mRNA | 167 | 4999 | 167 | ID=MS.gene054006.t1;Parent=MS.gene054006 |
| 15117 | exon | 167 | 260 | 167 | ID=MS.gene054006.t1.exon1;Parent=MS.gene054006.t1 |
| 15117 | CDS | 167 | 260 | 167 | ID=cds.MS.gene054006.t1;Parent=MS.gene054006.t1 |
| 15117 | exon | 1411 | 1460 | 1411 | ID=MS.gene054006.t1.exon2;Parent=MS.gene054006.t1 |
| 15117 | CDS | 1411 | 1460 | 1411 | ID=cds.MS.gene054006.t1;Parent=MS.gene054006.t1 |
| 15117 | exon | 1603 | 1650 | 1603 | ID=MS.gene054006.t1.exon3;Parent=MS.gene054006.t1 |
| 15117 | CDS | 1603 | 1650 | 1603 | ID=cds.MS.gene054006.t1;Parent=MS.gene054006.t1 |
| 15117 | exon | 2639 | 2674 | 2639 | ID=MS.gene054006.t1.exon4;Parent=MS.gene054006.t1 |
| 15117 | CDS | 2639 | 2674 | 2639 | ID=cds.MS.gene054006.t1;Parent=MS.gene054006.t1 |
| 15117 | exon | 2784 | 2865 | 2784 | ID=MS.gene054006.t1.exon5;Parent=MS.gene054006.t1 |
| 15117 | CDS | 2784 | 2865 | 2784 | ID=cds.MS.gene054006.t1;Parent=MS.gene054006.t1 |
| 15117 | exon | 3679 | 3737 | 3679 | ID=MS.gene054006.t1.exon6;Parent=MS.gene054006.t1 |
| 15117 | CDS | 3679 | 3737 | 3679 | ID=cds.MS.gene054006.t1;Parent=MS.gene054006.t1 |
| 15117 | exon | 4675 | 4776 | 4675 | ID=MS.gene054006.t1.exon7;Parent=MS.gene054006.t1 |
| 15117 | CDS | 4675 | 4776 | 4675 | ID=cds.MS.gene054006.t1;Parent=MS.gene054006.t1 |
| 15117 | exon | 4895 | 4999 | 4895 | ID=MS.gene054006.t1.exon8;Parent=MS.gene054006.t1 |
| 15117 | CDS | 4895 | 4999 | 4895 | ID=cds.MS.gene054006.t1;Parent=MS.gene054006.t1 |
| Gene Sequence |
| Protein sequence |
