Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054005.t1 | XP_003597029.1 | 98.7 | 237 | 3 | 0 | 1 | 237 | 38 | 274 | 3.20E-110 | 407.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054005.t1 | Q9LSX7 | 73.1 | 242 | 60 | 2 | 1 | 237 | 41 | 282 | 2.4e-82 | 306.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054005.t1 | G7IKL0 | 98.7 | 237 | 3 | 0 | 1 | 237 | 38 | 274 | 2.3e-110 | 407.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene054005 | 0.868404 | 6.69E-66 | -1.69E-46 |
| MS.gene050752 | MS.gene054005 | 0.801966 | 7.02E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene054005 | 0.853553 | 2.21E-61 | -1.69E-46 |
| MS.gene051234 | MS.gene054005 | 0.838686 | 2.48E-57 | -1.69E-46 |
| MS.gene054004 | MS.gene054005 | 0.952651 | 1.53E-110 | -1.69E-46 |
| MS.gene054005 | MS.gene054006 | 0.834405 | 3.05E-56 | -1.69E-46 |
| MS.gene054005 | MS.gene054403 | 0.802007 | 6.88E-49 | -1.69E-46 |
| MS.gene054005 | MS.gene057662 | 0.804515 | 2.08E-49 | -1.69E-46 |
| MS.gene054005 | MS.gene059146 | 0.813071 | 3.08E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene059802 | 0.850277 | 1.88E-60 | -1.69E-46 |
| MS.gene054005 | MS.gene061878 | 0.821639 | 3.63E-53 | -1.69E-46 |
| MS.gene054005 | MS.gene062701 | 0.810522 | 1.11E-50 | -1.69E-46 |
| MS.gene054005 | MS.gene06541 | 0.827244 | 1.74E-54 | -1.69E-46 |
| MS.gene054005 | MS.gene065644 | 0.803722 | 3.04E-49 | -1.69E-46 |
| MS.gene054005 | MS.gene06786 | 0.829826 | 4.14E-55 | -1.69E-46 |
| MS.gene054005 | MS.gene068001 | 0.811585 | 6.50E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene068742 | 0.842233 | 2.93E-58 | -1.69E-46 |
| MS.gene054005 | MS.gene069828 | 0.817187 | 3.76E-52 | -1.69E-46 |
| MS.gene054005 | MS.gene072078 | 0.838171 | 3.37E-57 | -1.69E-46 |
| MS.gene054005 | MS.gene072555 | 0.803188 | 3.93E-49 | -1.69E-46 |
| MS.gene054005 | MS.gene073207 | 0.85467 | 1.05E-61 | -1.69E-46 |
| MS.gene054005 | MS.gene073232 | 0.826025 | 3.40E-54 | -1.69E-46 |
| MS.gene054005 | MS.gene073674 | 0.80719 | 5.71E-50 | -1.69E-46 |
| MS.gene054005 | MS.gene07417 | 0.826006 | 3.44E-54 | -1.69E-46 |
| MS.gene054005 | MS.gene074401 | 0.839502 | 1.52E-57 | -1.69E-46 |
| MS.gene054005 | MS.gene08470 | 0.827118 | 1.87E-54 | -1.69E-46 |
| MS.gene054005 | MS.gene08793 | 0.810178 | 1.31E-50 | -1.69E-46 |
| MS.gene054005 | MS.gene08922 | 0.825254 | 5.18E-54 | -1.69E-46 |
| MS.gene054005 | MS.gene22740 | 0.812166 | 4.86E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene24531 | 0.84604 | 2.79E-59 | -1.69E-46 |
| MS.gene054005 | MS.gene25828 | 0.804945 | 1.69E-49 | -1.69E-46 |
| MS.gene054005 | MS.gene25901 | 0.810938 | 8.99E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene26945 | 0.805812 | 1.11E-49 | -1.69E-46 |
| MS.gene054005 | MS.gene28153 | 0.826541 | 2.56E-54 | -1.69E-46 |
| MS.gene054005 | MS.gene30352 | 0.827832 | 1.26E-54 | -1.69E-46 |
| MS.gene054005 | MS.gene32960 | 0.814741 | 1.32E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene34925 | 0.81174 | 6.02E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene35789 | 0.879593 | 1.10E-69 | -1.69E-46 |
| MS.gene054005 | MS.gene35791 | 0.998772 | 4.85E-276 | -1.69E-46 |
| MS.gene054005 | MS.gene37090 | 0.816352 | 5.78E-52 | -1.69E-46 |
| MS.gene054005 | MS.gene46305 | 0.837533 | 4.92E-57 | -1.69E-46 |
| MS.gene054005 | MS.gene49868 | 0.866598 | 2.54E-65 | -1.69E-46 |
| MS.gene054005 | MS.gene52122 | 0.811846 | 5.71E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene52837 | 0.813299 | 2.75E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene56436 | 0.801186 | 1.01E-48 | -1.69E-46 |
| MS.gene054005 | MS.gene57343 | 0.823403 | 1.41E-53 | -1.69E-46 |
| MS.gene054005 | MS.gene57981 | 0.822573 | 2.20E-53 | -1.69E-46 |
| MS.gene054005 | MS.gene59505 | 0.821161 | 4.68E-53 | -1.69E-46 |
| MS.gene054005 | MS.gene60978 | 0.805542 | 1.27E-49 | -1.69E-46 |
| MS.gene054005 | MS.gene61153 | 0.836356 | 9.82E-57 | -1.69E-46 |
| MS.gene054005 | MS.gene61282 | 0.815963 | 7.06E-52 | -1.69E-46 |
| MS.gene054005 | MS.gene64806 | 0.824019 | 1.01E-53 | -1.69E-46 |
| MS.gene054005 | MS.gene67008 | 0.816414 | 5.60E-52 | -1.69E-46 |
| MS.gene054005 | MS.gene67010 | 0.808613 | 2.84E-50 | -1.69E-46 |
| MS.gene054005 | MS.gene69820 | 0.852985 | 3.22E-61 | -1.69E-46 |
| MS.gene054005 | MS.gene70311 | 0.831171 | 1.94E-55 | -1.69E-46 |
| MS.gene054005 | MS.gene71891 | -0.803055 | 4.18E-49 | -1.69E-46 |
| MS.gene054005 | MS.gene71994 | 0.821391 | 4.14E-53 | -1.69E-46 |
| MS.gene054005 | MS.gene72353 | 0.80943 | 1.90E-50 | -1.69E-46 |
| MS.gene054005 | MS.gene72914 | 0.834767 | 2.48E-56 | -1.69E-46 |
| MS.gene054005 | MS.gene73883 | 0.800599 | 1.34E-48 | -1.69E-46 |
| MS.gene054005 | MS.gene73885 | 0.813331 | 2.70E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene75344 | 0.840589 | 7.94E-58 | -1.69E-46 |
| MS.gene054005 | MS.gene80916 | 0.811492 | 6.81E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene82421 | 0.80886 | 2.52E-50 | -1.69E-46 |
| MS.gene054005 | MS.gene85610 | 0.830706 | 2.52E-55 | -1.69E-46 |
| MS.gene054005 | MS.gene87292 | 0.821346 | 4.24E-53 | -1.69E-46 |
| MS.gene054005 | MS.gene91203 | 0.851405 | 9.06E-61 | -1.69E-46 |
| MS.gene054005 | MS.gene96211 | 0.856812 | 2.50E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054005.t1 | MTR_2g088850 | 98.734 | 237 | 3 | 0 | 1 | 237 | 38 | 274 | 3.31e-173 | 477 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054005.t1 | AT3G21865 | 69.919 | 246 | 61 | 2 | 1 | 237 | 41 | 282 | 3.96e-113 | 326 |
Find 0 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAAACAATAAAAAAAT+GGG | - | 15119:1873-1892 | MS.gene054005:intergenic | 10.0% |
| !! | TAAGATAAACAATAAAAAAA+TGG | - | 15119:1874-1893 | MS.gene054005:intergenic | 10.0% |
| !!! | TTAAATTTTTAATCTACTTA+AGG | + | 15119:1267-1286 | MS.gene054005:intron | 10.0% |
| !! | TTATTGTTTATCTTAATAAG+TGG | + | 15119:1879-1898 | MS.gene054005:intron | 15.0% |
| !! | AAAGCTATAAAAAAATACAG+CGG | - | 15119:1011-1030 | MS.gene054005:intergenic | 20.0% |
| !! | AATAAGAATCTCATTACTTT+AGG | + | 15119:1524-1543 | MS.gene054005:intron | 20.0% |
| !! | AATTTCATATTCTGAATCTT+AGG | - | 15119:2546-2565 | MS.gene054005:intergenic | 20.0% |
| !! | AGTTATTTATTTAAAAGCGA+AGG | + | 15119:1586-1605 | MS.gene054005:intron | 20.0% |
| !! | ATAAGAATCTCATTACTTTA+GGG | + | 15119:1525-1544 | MS.gene054005:intron | 20.0% |
| !! | ATATTCGTAACATTGAAAAA+TGG | - | 15119:2451-2470 | MS.gene054005:intergenic | 20.0% |
| !! | ATTAGAAAGAAACAATGATA+TGG | - | 15119:4311-4330 | MS.gene054005:intergenic | 20.0% |
| !! | ATTTCATATTCTGAATCTTA+GGG | - | 15119:2545-2564 | MS.gene054005:intergenic | 20.0% |
| !! | CAATAATTAGATAAGAGTAA+AGG | - | 15119:3510-3529 | MS.gene054005:intergenic | 20.0% |
| !! | TAATCTATAAAGCTATAAAC+AGG | - | 15119:1319-1338 | MS.gene054005:intergenic | 20.0% |
| !! | TAGAATCTATATATTTGTGA+AGG | + | 15119:3724-3743 | MS.gene054005:intron | 20.0% |
| !! | TCACAAAAGTTGTTTAAAAA+TGG | - | 15119:2625-2644 | MS.gene054005:intergenic | 20.0% |
| !! | TTACATTCTATCTTTATGTA+TGG | + | 15119:3092-3111 | MS.gene054005:intron | 20.0% |
| !!! | AAATTTAAACTCTAAGACAA+TGG | - | 15119:1255-1274 | MS.gene054005:intergenic | 20.0% |
| !!! | ATAAAACAAAAGTATACGAA+AGG | - | 15119:2173-2192 | MS.gene054005:intergenic | 20.0% |
| !!! | ATCATTCCTCTTTTTTTTTA+GGG | + | 15119:2839-2858 | MS.gene054005:intron | 20.0% |
| !!! | TATCATTCCTCTTTTTTTTT+AGG | + | 15119:2838-2857 | MS.gene054005:intron | 20.0% |
| !!! | TCACAAAAGTTGTTTAAAAT+TGG | + | 15119:2806-2825 | MS.gene054005:intron | 20.0% |
| !!! | TCTAAAGGTAATCTTTAAAA+TGG | - | 15119:3482-3501 | MS.gene054005:intergenic | 20.0% |
| !!! | TTCATTTTTACAGAATCATT+CGG | - | 15119:2484-2503 | MS.gene054005:intergenic | 20.0% |
| ! | AAGGTTAAATTAACATGTCA+TGG | + | 15119:1286-1305 | MS.gene054005:intron | 25.0% |
| ! | AATAACCATAAAACTAAGTC+TGG | - | 15119:1169-1188 | MS.gene054005:intergenic | 25.0% |
| ! | AATTCTGAATCATTAAGCAA+AGG | - | 15119:956-975 | MS.gene054005:intergenic | 25.0% |
| ! | AGAAAAAAACACAATGTTTG+AGG | - | 15119:3215-3234 | MS.gene054005:intergenic | 25.0% |
| ! | ATAGATTCTAGATTCTAGAT+AGG | - | 15119:3714-3733 | MS.gene054005:intergenic | 25.0% |
| ! | ATGATTCTGTAAAAATGAAC+TGG | + | 15119:2485-2504 | MS.gene054005:intron | 25.0% |
| ! | ATTCTGTGATTTATATCTCA+TGG | + | 15119:2299-2318 | MS.gene054005:CDS | 25.0% |
| ! | ATTTCTCCCTAAAAAAAAAG+AGG | - | 15119:2848-2867 | MS.gene054005:intergenic | 25.0% |
| ! | CAAAAGTAGAAAAATTGTCT+TGG | - | 15119:1810-1829 | MS.gene054005:intergenic | 25.0% |
| ! | CATGATGAGTGATTAATATA+TGG | - | 15119:2366-2385 | MS.gene054005:intergenic | 25.0% |
| ! | CTATGTTTATGTTTCTCTTT+AGG | + | 15119:1639-1658 | MS.gene054005:intron | 25.0% |
| ! | TAAGAATCTCATTACTTTAG+GGG | + | 15119:1526-1545 | MS.gene054005:intron | 25.0% |
| ! | TAGAATTTAATTACCATGCA+AGG | + | 15119:3648-3667 | MS.gene054005:intron | 25.0% |
| ! | TATCAAAATAGAGGACAAAA+AGG | - | 15119:4095-4114 | MS.gene054005:intergenic | 25.0% |
| ! | TGAGATGTTACAAAATTAGA+TGG | + | 15119:3949-3968 | MS.gene054005:intron | 25.0% |
| ! | TGATTCTGTAAAAATGAACT+GGG | + | 15119:2486-2505 | MS.gene054005:intron | 25.0% |
| !! | ATCTTAGGGTAAGATATTTT+TGG | - | 15119:2531-2550 | MS.gene054005:intergenic | 25.0% |
| !! | ATTCCAATCATATTTTACCA+TGG | - | 15119:3780-3799 | MS.gene054005:intergenic | 25.0% |
| !! | CAAGACAATTTTTCTACTTT+TGG | + | 15119:1808-1827 | MS.gene054005:intron | 25.0% |
| !! | TATGTTTCTCTTTAGGTTAA+AGG | + | 15119:1646-1665 | MS.gene054005:intron | 25.0% |
| !! | TTTATGATCTTTTCCTAGTT+TGG | + | 15119:2911-2930 | MS.gene054005:intron | 25.0% |
| !!! | ATCATAAGAAATGTCGATTT+GGG | + | 15119:1223-1242 | MS.gene054005:intron | 25.0% |
| AAACATAAGTATGCAGCAAT+CGG | - | 15119:4064-4083 | MS.gene054004:intergenic | 30.0% | |
| AACTTATTGGTCATAATAGC+CGG | - | 15119:2073-2092 | MS.gene054005:intergenic | 30.0% | |
| AATATTATAACACGACACCA+TGG | + | 15119:3760-3779 | MS.gene054005:intron | 30.0% | |
| AATCATTAAGCAAAGGAAAG+TGG | - | 15119:949-968 | MS.gene054005:intergenic | 30.0% | |
| AATGGTAAAAGATGTTTCTC+AGG | - | 15119:3464-3483 | MS.gene054005:intergenic | 30.0% | |
| ACACCATGGTAAAATATGAT+TGG | + | 15119:3774-3793 | MS.gene054005:intron | 30.0% | |
| AGTATAAAAAAGTAGTGCAC+AGG | - | 15119:3803-3822 | MS.gene054005:intergenic | 30.0% | |
| ATAAAACATCATACCTTGAC+TGG | - | 15119:918-937 | MS.gene054005:intergenic | 30.0% | |
| ATAGTAACATACAGCTAACT+GGG | - | 15119:4227-4246 | MS.gene054005:intergenic | 30.0% | |
| ATCATTAAGCAAAGGAAAGT+GGG | - | 15119:948-967 | MS.gene054005:intergenic | 30.0% | |
| ATGACCAATAAGTTGTATGT+AGG | + | 15119:2079-2098 | MS.gene054005:intron | 30.0% | |
| CACACACTTCGTATTTATAA+TGG | - | 15119:1443-1462 | MS.gene054005:intergenic | 30.0% | |
| CTTTACCTTCAGATGAATTA+CGG | + | 15119:862-881 | MS.gene054005:CDS | 30.0% | |
| GTCTTATGTAATGAACTTGA+TGG | + | 15119:2385-2404 | MS.gene054005:intron | 30.0% | |
| TATAGTAACATACAGCTAAC+TGG | - | 15119:4228-4247 | MS.gene054005:intergenic | 30.0% | |
| TGTAAAAATGAACTGGGATA+TGG | + | 15119:2492-2511 | MS.gene054005:intron | 30.0% | |
| TTCGAACTAAATTTGATCTC+AGG | + | 15119:3018-3037 | MS.gene054005:intron | 30.0% | |
| TTTACCTTCAGATGAATTAC+GGG | + | 15119:863-882 | MS.gene054005:CDS | 30.0% | |
| ! | GATCATAAGAAATGTCGATT+TGG | + | 15119:1222-1241 | MS.gene054005:intron | 30.0% |
| !! | ATGGTGTCGTGTTATAATAT+TGG | - | 15119:3761-3780 | MS.gene054005:intergenic | 30.0% |
| !! | TTTAAACTCTAAGACAATGG+TGG | - | 15119:1252-1271 | MS.gene054005:intergenic | 30.0% |
| !!! | CATAGCTTGTATTTTAAAGC+TGG | - | 15119:1624-1643 | MS.gene054005:intergenic | 30.0% |
| !!! | CTTTTTTCGTCTCTTCTTAT+TGG | - | 15119:2782-2801 | MS.gene054005:intergenic | 30.0% |
| !!! | TGTGCACTACTTTTTTATAC+TGG | + | 15119:3802-3821 | MS.gene054005:intron | 30.0% |
| AACAACAAATCATGTTGCAG+AGG | + | 15119:4335-4354 | MS.gene054005:intron | 35.0% | |
| AATAAACCGTCATCATGACT+AGG | + | 15119:3598-3617 | MS.gene054005:intron | 35.0% | |
| ACTTATTGGTCATAATAGCC+GGG | - | 15119:2072-2091 | MS.gene054005:intergenic | 35.0% | |
| AGAGTAAAGGTTCTCTCTAA+AGG | - | 15119:3497-3516 | MS.gene054005:intergenic | 35.0% | |
| ATAAACCGTCATCATGACTA+GGG | + | 15119:3599-3618 | MS.gene054005:intron | 35.0% | |
| ATAGTTGCGTATAAACTGGA+TGG | + | 15119:1969-1988 | MS.gene054005:intron | 35.0% | |
| ATCCACAAACATTCATGCAT+TGG | - | 15119:982-1001 | MS.gene054005:intergenic | 35.0% | |
| ATGCACTCTTTATGTAGTAG+TGG | + | 15119:1135-1154 | MS.gene054005:intron | 35.0% | |
| ATTGGTTAAGCAGCTAAAAG+AGG | + | 15119:1725-1744 | MS.gene054005:intron | 35.0% | |
| CCAAAGAAAAGTTCCAAAGA+TGG | - | 15119:4430-4449 | MS.gene054005:intergenic | 35.0% | |
| CGATATAGTTGCGTATAAAC+TGG | + | 15119:1965-1984 | MS.gene054005:intron | 35.0% | |
| GGTATGGGATATCAAAATAG+AGG | - | 15119:4104-4123 | MS.gene054005:intergenic | 35.0% | |
| GTCACCTACATACAACTTAT+TGG | - | 15119:2086-2105 | MS.gene054005:intergenic | 35.0% | |
| GTGATTTATATCTCATGGAC+CGG | + | 15119:2304-2323 | MS.gene054005:CDS | 35.0% | |
| TAGCACAAATTCAAATGCGT+CGG | + | 15119:821-840 | MS.gene054005:CDS | 35.0% | |
| TAGTTGCGTATAAACTGGAT+GGG | + | 15119:1970-1989 | MS.gene054005:intron | 35.0% | |
| TGACAAGATATAACTCTTGC+AGG | - | 15119:3927-3946 | MS.gene054005:intergenic | 35.0% | |
| TGATTTATATCTCATGGACC+GGG | + | 15119:2305-2324 | MS.gene054005:CDS | 35.0% | |
| TGTAAACTACAGCACACAAA+AGG | - | 15119:3333-3352 | MS.gene054005:intergenic | 35.0% | |
| TTCGTCAATTAGAACCAGAT+TGG | + | 15119:4173-4192 | MS.gene054005:CDS | 35.0% | |
| TTTGACTGTGAACATTTGCA+CGG | + | 15119:3415-3434 | MS.gene054005:intron | 35.0% | |
| TTTGTTTGACCTATGTTTCC+CGG | + | 15119:2051-2070 | MS.gene054005:intron | 35.0% | |
| ! | AGGAGATGGTAATTTCTAGA+AGG | - | 15119:1200-1219 | MS.gene054005:intergenic | 35.0% |
| ! | ATATGTTTGTTGCCATTTGC+TGG | + | 15119:3854-3873 | MS.gene054005:intron | 35.0% |
| ! | GCAGTTCGTTCTGTTTTATA+AGG | - | 15119:4388-4407 | MS.gene054005:intergenic | 35.0% |
| ! | GCTACAGATCACAATTTTGT+CGG | - | 15119:3986-4005 | MS.gene054005:intergenic | 35.0% |
| ! | TAATTAGTAAGCACTAGCCT+AGG | - | 15119:1395-1414 | MS.gene054005:intergenic | 35.0% |
| !!! | AATTTTTTCAGCCAACCTTG+GGG | + | 15119:1056-1075 | MS.gene054005:intron | 35.0% |
| !!! | CATCAGAATTTTAGGTTCCA+AGG | - | 15119:3904-3923 | MS.gene054005:intergenic | 35.0% |
| !!! | CCATCTTTGGAACTTTTCTT+TGG | + | 15119:4427-4446 | MS.gene054005:CDS | 35.0% |
| !!! | GAATTTTTTCAGCCAACCTT+GGG | + | 15119:1055-1074 | MS.gene054005:intron | 35.0% |
| !!! | GTGTTCCAGACTTAGTTTTA+TGG | + | 15119:1161-1180 | MS.gene054005:intron | 35.0% |
| !!! | TGAATTTTTTCAGCCAACCT+TGG | + | 15119:1054-1073 | MS.gene054005:intron | 35.0% |
| AAGTTAACCACCTTCTTGCT+GGG | + | 15119:3241-3260 | MS.gene054005:intron | 40.0% | |
| AGAGAACCTGCATATAGGTA+TGG | - | 15119:4120-4139 | MS.gene054005:intergenic | 40.0% | |
| AGAGTAGCAAGAGGAATACT+AGG | - | 15119:3044-3063 | MS.gene054005:intergenic | 40.0% | |
| AGATCTCCTAATCCTACACA+AGG | + | 15119:753-772 | MS.gene054005:CDS | 40.0% | |
| AGCCAATGCATGAATGTTTG+TGG | + | 15119:977-996 | MS.gene054005:intron | 40.0% | |
| AGCTAACTGGGTGACAATTT+CGG | - | 15119:4215-4234 | MS.gene054005:intergenic | 40.0% | |
| CAACAATACTTCTAGCACAG+AGG | - | 15119:2268-2287 | MS.gene054005:intergenic | 40.0% | |
| CAGTATGTGTGTTCCAAACT+AGG | - | 15119:2927-2946 | MS.gene054005:intergenic | 40.0% | |
| CCATGCAAGGACAATGTAAA+AGG | + | 15119:3661-3680 | MS.gene054005:intron | 40.0% | |
| CCTAGAGTATACAACTTCCT+AGG | + | 15119:1375-1394 | MS.gene054005:intron | 40.0% | |
| CCTAGGAAGTTGTATACTCT+AGG | - | 15119:1378-1397 | MS.gene054005:intergenic | 40.0% | |
| GAAGTTGAGTGAAGGAAGAA+AGG | + | 15119:1093-1112 | MS.gene054005:CDS | 40.0% | |
| GAGAACCTGCATATAGGTAT+GGG | - | 15119:4119-4138 | MS.gene054005:intergenic | 40.0% | |
| GATATCCCATACCTATATGC+AGG | + | 15119:4111-4130 | MS.gene054005:intron | 40.0% | |
| GATCTCCTAATCCTACACAA+GGG | + | 15119:754-773 | MS.gene054005:CDS | 40.0% | |
| TCATAATAGCCGGGAAACAT+AGG | - | 15119:2063-2082 | MS.gene054005:intergenic | 40.0% | |
| TCGACATTTCTTATGATCGC+AGG | - | 15119:1220-1239 | MS.gene054005:intergenic | 40.0% | |
| TTGTAGCGTTAGAAGAAGCA+GGG | + | 15119:3138-3157 | MS.gene054005:CDS | 40.0% | |
| TTTCTTATGATCGCAGGAGA+TGG | - | 15119:1214-1233 | MS.gene054005:intergenic | 40.0% | |
| TTTGAATTTGTGCTAGCTCC+AGG | - | 15119:816-835 | MS.gene054005:intergenic | 40.0% | |
| ! | CCTTTTACATTGTCCTTGCA+TGG | - | 15119:3664-3683 | MS.gene054005:intergenic | 40.0% |
| ! | CTGTTGCGATTGTTTTCACT+TGG | + | 15119:721-740 | MS.gene054005:CDS | 40.0% |
| ! | CTTGCAGGCATCAGAATTTT+AGG | - | 15119:3912-3931 | MS.gene054005:intergenic | 40.0% |
| ! | TGGGAATACTTGATGACATG+AGG | + | 15119:1989-2008 | MS.gene054005:intron | 40.0% |
| ! | TTGCGATTGTTTTCACTTGG+AGG | + | 15119:724-743 | MS.gene054005:CDS | 40.0% |
| ! | TTTGTGTCGATATGCCAATC+TGG | - | 15119:4190-4209 | MS.gene054005:intergenic | 40.0% |
| !! | CTCTGTGCTAGAAGTATTGT+TGG | + | 15119:2266-2285 | MS.gene054005:CDS | 40.0% |
| !! | CTGTTTTATAAGGCGCTATG+TGG | - | 15119:4378-4397 | MS.gene054005:intergenic | 40.0% |
| !! | GAAGGTAAAGAAGCATCAGA+AGG | - | 15119:852-871 | MS.gene054005:intergenic | 40.0% |
| !! | TGCTCTTTTCAAGACATCCT+TGG | + | 15119:3884-3903 | MS.gene054005:intron | 40.0% |
| CTTGTAGCGTTAGAAGAAGC+AGG | + | 15119:3137-3156 | MS.gene054005:CDS | 45.0% | |
| GAAGTTAACCACCTTCTTGC+TGG | + | 15119:3240-3259 | MS.gene054005:intron | 45.0% | |
| GAGCATATACAGCCAGCAAA+TGG | - | 15119:3869-3888 | MS.gene054005:intergenic | 45.0% | |
| GCTAACTGGGTGACAATTTC+GGG | - | 15119:4214-4233 | MS.gene054005:intergenic | 45.0% | |
| GCTGAAGAGAACCTGCATAT+AGG | - | 15119:4125-4144 | MS.gene054005:intergenic | 45.0% | |
| GGTATTCACTTCAGGTGGTT+TGG | + | 15119:3160-3179 | MS.gene054005:CDS | 45.0% | |
| TCTTCTTGGAGTGATCCTTG+AGG | + | 15119:2112-2131 | MS.gene054005:CDS | 45.0% | |
| TGAGTTCTTTCAGCCAGTCA+AGG | + | 15119:902-921 | MS.gene054005:CDS | 45.0% | |
| TGCTACAACAGAGTAGCAAG+AGG | - | 15119:3053-3072 | MS.gene054005:intergenic | 45.0% | |
| TGTAGCGTTAGAAGAAGCAG+GGG | + | 15119:3139-3158 | MS.gene054005:CDS | 45.0% | |
| TGTGCCCGTAATTCATCTGA+AGG | - | 15119:870-889 | MS.gene054005:intergenic | 45.0% | |
| TGTGTTCAGTGCTCCATCTT+TGG | + | 15119:4414-4433 | MS.gene054005:CDS | 45.0% | |
| !! | AGGTGGTTTGGTTAAGGACA+AGG | + | 15119:3172-3191 | MS.gene054005:CDS | 45.0% |
| !! | CACTTCAGGTGGTTTGGTTA+AGG | + | 15119:3166-3185 | MS.gene054005:CDS | 45.0% |
| !! | TGGAGCACTGAACACATTAG+CGG | - | 15119:4410-4429 | MS.gene054005:intergenic | 45.0% |
| !!! | TTTAATTTGTTATATTTTTT+AGG | + | 15119:1676-1695 | MS.gene054005:intron | 5.0% |
| AACCGTCATCATGACTAGGG+AGG | + | 15119:3602-3621 | MS.gene054005:intron | 50.0% | |
| AAGTAGTCCAGAGGAGCTTC+AGG | + | 15119:2136-2155 | MS.gene054005:CDS | 50.0% | |
| ACCGTCATCATGACTAGGGA+GGG | + | 15119:3603-3622 | MS.gene054005:intron | 50.0% | |
| AGAATGTTAACCAGTGCCCC+CGG | + | 15119:1699-1718 | MS.gene054005:intron | 50.0% | |
| ATATCTCATGGACCGGGTTC+TGG | + | 15119:2311-2330 | MS.gene054005:CDS | 50.0% | |
| ATCCTACACAAGGGAGGCAA+CGG | + | 15119:763-782 | MS.gene054005:CDS | 50.0% | |
| ATTCCTTAACAAGTGCCCCG+GGG | + | 15119:1831-1850 | MS.gene054005:intron | 50.0% | |
| CCTCTGGACTACTTTCCTCA+AGG | - | 15119:2130-2149 | MS.gene054005:intergenic | 50.0% | |
| CCTTGAGGAAAGTAGTCCAG+AGG | + | 15119:2127-2146 | MS.gene054005:CDS | 50.0% | |
| CTCCTAATCCTACACAAGGG+AGG | + | 15119:757-776 | MS.gene054005:CDS | 50.0% | |
| GATCACTCCAAGAAGACGAC+AGG | - | 15119:2108-2127 | MS.gene054005:intergenic | 50.0% | |
| GATTCCTTAACAAGTGCCCC+GGG | + | 15119:1830-1849 | MS.gene054005:intron | 50.0% | |
| GGATTCCTTAACAAGTGCCC+CGG | + | 15119:1829-1848 | MS.gene054005:intron | 50.0% | |
| GGTGGTGCATCTAGTAATCC+TGG | + | 15119:795-814 | MS.gene054005:CDS | 50.0% | |
| GTGAGGCAGAAGTTGAGTGA+AGG | + | 15119:1085-1104 | MS.gene054005:CDS | 50.0% | |
| TAGCTGCTTAACCAATGCCC+CGG | - | 15119:1721-1740 | MS.gene054005:intergenic | 50.0% | |
| TAGGTGACCTGTCGTCTTCT+TGG | + | 15119:2098-2117 | MS.gene054005:intron | 50.0% | |
| TGCCTCCCTTGTGTAGGATT+AGG | - | 15119:762-781 | MS.gene054005:intergenic | 50.0% | |
| TTTCACACCTGAAGCTCCTC+TGG | - | 15119:2146-2165 | MS.gene054005:intergenic | 50.0% | |
| ! | CTCTTCAGCAGCACTGAGAA+TGG | + | 15119:4136-4155 | MS.gene054005:CDS | 50.0% |
| !! | GAAGCAGGGGTATTCACTTC+AGG | + | 15119:3152-3171 | MS.gene054005:CDS | 50.0% |
| AACACTGCCCAGCAAGAAGG+TGG | - | 15119:3251-3270 | MS.gene054005:intergenic | 55.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | + | 15119:1701-1720 | MS.gene054005:intron | 55.0% | |
| AGCTGCTTAACCAATGCCCC+GGG | - | 15119:1720-1739 | MS.gene054005:intergenic | 55.0% | |
| AGGCAACGGAAAAGGCAAGG+TGG | + | 15119:777-796 | MS.gene054005:CDS | 55.0% | |
| CAACCTTGGGGCAGATAGTG+AGG | + | 15119:1068-1087 | MS.gene054005:CDS | 55.0% | |
| CACAAGGGAGGCAACGGAAA+AGG | + | 15119:769-788 | MS.gene054005:CDS | 55.0% | |
| CCCCTCCCTAGTCATGATGA+CGG | - | 15119:3607-3626 | MS.gene054005:intergenic | 55.0% | |
| CCGTCATCATGACTAGGGAG+GGG | + | 15119:3604-3623 | MS.gene054005:intron | 55.0% | |
| CGCTTTCGTCATCCAGAACC+CGG | - | 15119:2326-2345 | MS.gene054005:intergenic | 55.0% | |
| CGTCATCATGACTAGGGAGG+GGG | + | 15119:3605-3624 | MS.gene054005:intron | 55.0% | |
| CTCACTATCTGCCCCAAGGT+TGG | - | 15119:1070-1089 | MS.gene054005:intergenic | 55.0% | |
| GAATGTTAACCAGTGCCCCC+GGG | + | 15119:1700-1719 | MS.gene054005:intron | 55.0% | |
| GTCATCATGACTAGGGAGGG+GGG | + | 15119:3606-3625 | MS.gene054005:intron | 55.0% | |
| TCTTGTTAACCAGTGCCCCC+GGG | - | 15119:1850-1869 | MS.gene054005:intergenic | 55.0% | |
| TGCAACACTGCCCAGCAAGA+AGG | - | 15119:3254-3273 | MS.gene054005:intergenic | 55.0% | |
| TTCCGTTGCCTCCCTTGTGT+AGG | - | 15119:768-787 | MS.gene054005:intergenic | 55.0% | |
| TTCCTTAACAAGTGCCCCGG+GGG | + | 15119:1832-1851 | MS.gene054005:intron | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+CGG | - | 15119:1851-1870 | MS.gene054005:intergenic | 55.0% |
| !! | GCAGGGGTATTCACTTCAGG+TGG | + | 15119:3155-3174 | MS.gene054005:CDS | 55.0% |
| !! | GGTTCTGGATGACGAAAGCG+AGG | + | 15119:2326-2345 | MS.gene054005:CDS | 55.0% |
| CTGCCTCACTATCTGCCCCA+AGG | - | 15119:1074-1093 | MS.gene054005:intergenic | 60.0% | |
| CTGCTTAACCAATGCCCCGG+GGG | - | 15119:1718-1737 | MS.gene054005:intergenic | 60.0% | |
| CTTGTTAACCAGTGCCCCCG+GGG | - | 15119:1849-1868 | MS.gene054005:intergenic | 60.0% | |
| GCTGCTTAACCAATGCCCCG+GGG | - | 15119:1719-1738 | MS.gene054005:intergenic | 60.0% | |
| GGGAGGCAACGGAAAAGGCA+AGG | + | 15119:774-793 | MS.gene054005:CDS | 60.0% | |
| CGCACTATTGGGGCGGTAGC+TGG | + | 15119:693-712 | MS.gene054005:CDS | 65.0% | |
| ! | TGCCCCCGGGGCACTTGTTA+AGG | - | 15119:1837-1856 | MS.gene054005:intergenic | 65.0% |
| AACCAGTGCCCCCGGGGCAT+TGG | + | 15119:1707-1726 | MS.gene054005:intron | 70.0% | |
| ! | AACAAGTGCCCCGGGGGCAC+TGG | + | 15119:1838-1857 | MS.gene054005:intron | 70.0% |
| ! | AACCAATGCCCCGGGGGCAC+TGG | - | 15119:1712-1731 | MS.gene054005:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15119 | gene | 687 | 4459 | 687 | ID=MS.gene054005 |
| 15119 | mRNA | 687 | 4459 | 687 | ID=MS.gene054005.t1;Parent=MS.gene054005 |
| 15119 | exon | 687 | 923 | 687 | ID=MS.gene054005.t1.exon1;Parent=MS.gene054005.t1 |
| 15119 | CDS | 687 | 923 | 687 | ID=cds.MS.gene054005.t1;Parent=MS.gene054005.t1 |
| 15119 | exon | 1067 | 1114 | 1067 | ID=MS.gene054005.t1.exon2;Parent=MS.gene054005.t1 |
| 15119 | CDS | 1067 | 1114 | 1067 | ID=cds.MS.gene054005.t1;Parent=MS.gene054005.t1 |
| 15119 | exon | 2101 | 2157 | 2101 | ID=MS.gene054005.t1.exon3;Parent=MS.gene054005.t1 |
| 15119 | CDS | 2101 | 2157 | 2101 | ID=cds.MS.gene054005.t1;Parent=MS.gene054005.t1 |
| 15119 | exon | 2246 | 2347 | 2246 | ID=MS.gene054005.t1.exon4;Parent=MS.gene054005.t1 |
| 15119 | CDS | 2246 | 2347 | 2246 | ID=cds.MS.gene054005.t1;Parent=MS.gene054005.t1 |
| 15119 | exon | 3128 | 3193 | 3128 | ID=MS.gene054005.t1.exon5;Parent=MS.gene054005.t1 |
| 15119 | CDS | 3128 | 3193 | 3128 | ID=cds.MS.gene054005.t1;Parent=MS.gene054005.t1 |
| 15119 | exon | 4133 | 4234 | 4133 | ID=MS.gene054005.t1.exon6;Parent=MS.gene054005.t1 |
| 15119 | CDS | 4133 | 4234 | 4133 | ID=cds.MS.gene054005.t1;Parent=MS.gene054005.t1 |
| 15119 | exon | 4355 | 4459 | 4355 | ID=MS.gene054005.t1.exon7;Parent=MS.gene054005.t1 |
| 15119 | CDS | 4355 | 4459 | 4355 | ID=cds.MS.gene054005.t1;Parent=MS.gene054005.t1 |
| Gene Sequence |
| Protein sequence |
