Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35791.t1 | XP_003597029.1 | 98.7 | 237 | 3 | 0 | 1 | 237 | 38 | 274 | 3.20E-110 | 407.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35791.t1 | Q9LSX7 | 73.1 | 242 | 60 | 2 | 1 | 237 | 41 | 282 | 2.4e-82 | 306.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35791.t1 | G7IKL0 | 98.7 | 237 | 3 | 0 | 1 | 237 | 38 | 274 | 2.3e-110 | 407.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene35791 | 0.864641 | 1.05E-64 | -1.69E-46 |
| MS.gene051003 | MS.gene35791 | 0.847645 | 1.01E-59 | -1.69E-46 |
| MS.gene051234 | MS.gene35791 | 0.832748 | 7.92E-56 | -1.69E-46 |
| MS.gene054004 | MS.gene35791 | 0.950828 | 7.33E-109 | -1.69E-46 |
| MS.gene054005 | MS.gene35791 | 0.998772 | 4.85E-276 | -1.69E-46 |
| MS.gene054006 | MS.gene35791 | 0.840392 | 8.94E-58 | -1.69E-46 |
| MS.gene057662 | MS.gene35791 | 0.802506 | 5.43E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene35791 | 0.808212 | 3.46E-50 | -1.69E-46 |
| MS.gene059802 | MS.gene35791 | 0.847712 | 9.73E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35791.t1 | MTR_2g088850 | 98.734 | 237 | 3 | 0 | 1 | 237 | 38 | 274 | 3.31e-173 | 477 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35791.t1 | AT3G21865 | 69.919 | 246 | 61 | 2 | 1 | 237 | 41 | 282 | 3.96e-113 | 326 |
Find 0 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAAACAATAAAAAAAT+GGG | - | 15118:1718-1737 | MS.gene35791:intergenic | 10.0% |
| !! | TAAGATAAACAATAAAAAAA+TGG | - | 15118:1719-1738 | MS.gene35791:intergenic | 10.0% |
| !!! | TTAAATTTTTAATCTACTTA+AGG | + | 15118:1111-1130 | MS.gene35791:intron | 10.0% |
| !! | TTATTGTTTATCTTAATAAG+TGG | + | 15118:1724-1743 | MS.gene35791:intron | 15.0% |
| !! | AAAGCTATAAAAAAATACAG+CGG | - | 15118:855-874 | MS.gene35791:intergenic | 20.0% |
| !! | AATAAGAATCTCATTACTTT+AGG | + | 15118:1368-1387 | MS.gene35791:intron | 20.0% |
| !! | AATTTCATATTCTGAATCTT+AGG | - | 15118:2391-2410 | MS.gene35791:intergenic | 20.0% |
| !! | AGTTATTTATTTAAAAGCGA+AGG | + | 15118:1430-1449 | MS.gene35791:intron | 20.0% |
| !! | ATAAGAATCTCATTACTTTA+GGG | + | 15118:1369-1388 | MS.gene35791:intron | 20.0% |
| !! | ATATTCGTAACATTGAAAAA+TGG | - | 15118:2296-2315 | MS.gene35791:intergenic | 20.0% |
| !! | ATTAGAAAGAAACAATGATA+TGG | - | 15118:4159-4178 | MS.gene35791:intergenic | 20.0% |
| !! | ATTTCATATTCTGAATCTTA+GGG | - | 15118:2390-2409 | MS.gene35791:intergenic | 20.0% |
| !! | CAATAATTAGATAAGAGTAA+AGG | - | 15118:3358-3377 | MS.gene35791:intergenic | 20.0% |
| !! | TAATCTATAAAGCTATAAAC+AGG | - | 15118:1163-1182 | MS.gene35791:intergenic | 20.0% |
| !! | TAGAATCTATATATTTGTGA+AGG | + | 15118:3572-3591 | MS.gene35791:intron | 20.0% |
| !! | TCACAAAAGTTGTTTAAAAA+TGG | - | 15118:2471-2490 | MS.gene35791:intergenic | 20.0% |
| !! | TTACATTCTATCTTTATGTA+TGG | + | 15118:2940-2959 | MS.gene35791:intron | 20.0% |
| !!! | AAATTTAAACTCTAAGACAA+TGG | - | 15118:1099-1118 | MS.gene35791:intergenic | 20.0% |
| !!! | ATAAAACAAAAGTATACGAA+AGG | - | 15118:2018-2037 | MS.gene35791:intergenic | 20.0% |
| !!! | ATCATTCCTCTTTTTTTTTA+GGG | + | 15118:2687-2706 | MS.gene35791:intron | 20.0% |
| !!! | TATCATTCCTCTTTTTTTTT+AGG | + | 15118:2686-2705 | MS.gene35791:intron | 20.0% |
| !!! | TCACAAAAGTTGTTTAAAAT+TGG | + | 15118:2654-2673 | MS.gene35791:intron | 20.0% |
| !!! | TCTAAAGGTAATCTTTAAAA+TGG | - | 15118:3330-3349 | MS.gene35791:intergenic | 20.0% |
| !!! | TTCATTTTTACAGAATCATT+CGG | - | 15118:2329-2348 | MS.gene35791:intergenic | 20.0% |
| ! | AAGGTTAAATTAACATGTCA+TGG | + | 15118:1130-1149 | MS.gene35791:intron | 25.0% |
| ! | AATAACCATAAAACTAAGTC+TGG | - | 15118:1013-1032 | MS.gene35791:intergenic | 25.0% |
| ! | AATTCTGAATCATTAAGCAA+AGG | - | 15118:800-819 | MS.gene35791:intergenic | 25.0% |
| ! | AGAAAAAAACACAATGTTTG+AGG | - | 15118:3063-3082 | MS.gene35791:intergenic | 25.0% |
| ! | ATAGATTCTAGATTCTAGAT+AGG | - | 15118:3562-3581 | MS.gene35791:intergenic | 25.0% |
| ! | ATGATTCTGTAAAAATGAAC+TGG | + | 15118:2330-2349 | MS.gene35791:intron | 25.0% |
| ! | ATTCTGTGATTTATATCTCA+TGG | + | 15118:2144-2163 | MS.gene35791:CDS | 25.0% |
| ! | ATTTCTCCCTAAAAAAAAAG+AGG | - | 15118:2696-2715 | MS.gene35791:intergenic | 25.0% |
| ! | CAAAAGTAGAAAAATTGTCT+TGG | - | 15118:1655-1674 | MS.gene35791:intergenic | 25.0% |
| ! | CATGATGAGTGATTAATATA+TGG | - | 15118:2211-2230 | MS.gene35791:intergenic | 25.0% |
| ! | CTATGTTTATGTTTCTCTTT+AGG | + | 15118:1483-1502 | MS.gene35791:intron | 25.0% |
| ! | TAAGAATCTCATTACTTTAG+GGG | + | 15118:1370-1389 | MS.gene35791:intron | 25.0% |
| ! | TAGAATTTAATTACCATGCA+AGG | + | 15118:3496-3515 | MS.gene35791:intron | 25.0% |
| ! | TATCAAAATAGAGGACAAAA+AGG | - | 15118:3943-3962 | MS.gene35791:intergenic | 25.0% |
| ! | TGAGATGTTACAAAATTAGA+TGG | + | 15118:3797-3816 | MS.gene35791:intron | 25.0% |
| ! | TGATTCTGTAAAAATGAACT+GGG | + | 15118:2331-2350 | MS.gene35791:intron | 25.0% |
| !! | ATCTTAGGGTAAGATATTTT+TGG | - | 15118:2376-2395 | MS.gene35791:intergenic | 25.0% |
| !! | ATTCCAATCATATTTTACCA+TGG | - | 15118:3628-3647 | MS.gene35791:intergenic | 25.0% |
| !! | CAAGACAATTTTTCTACTTT+TGG | + | 15118:1653-1672 | MS.gene35791:intron | 25.0% |
| !! | TATGTTTCTCTTTAGGTTAA+AGG | + | 15118:1490-1509 | MS.gene35791:intron | 25.0% |
| !! | TTTATGATCTTTTCCTAGTT+TGG | + | 15118:2759-2778 | MS.gene35791:intron | 25.0% |
| !!! | ATCATAAGAAATGTCGATTT+GGG | + | 15118:1067-1086 | MS.gene35791:intron | 25.0% |
| AAACATAAGTATGCAGCAAT+CGG | - | 15118:3912-3931 | MS.gene35790:intergenic | 30.0% | |
| AACTTATTGGTCATAATAGC+CGG | - | 15118:1918-1937 | MS.gene35791:intergenic | 30.0% | |
| AATATTATAACACGACACCA+TGG | + | 15118:3608-3627 | MS.gene35791:intron | 30.0% | |
| AATCATTAAGCAAAGGAAAG+TGG | - | 15118:793-812 | MS.gene35791:intergenic | 30.0% | |
| AATGGTAAAAGATGTTTCTC+AGG | - | 15118:3312-3331 | MS.gene35791:intergenic | 30.0% | |
| ACACCATGGTAAAATATGAT+TGG | + | 15118:3622-3641 | MS.gene35791:intron | 30.0% | |
| AGTATAAAAAAGTAGTGCAC+AGG | - | 15118:3651-3670 | MS.gene35791:intergenic | 30.0% | |
| ATAAAACATCATACCTTGAC+TGG | - | 15118:762-781 | MS.gene35791:intergenic | 30.0% | |
| ATAGTAACATACAGCTAACT+GGG | - | 15118:4075-4094 | MS.gene35791:intergenic | 30.0% | |
| ATCATTAAGCAAAGGAAAGT+GGG | - | 15118:792-811 | MS.gene35791:intergenic | 30.0% | |
| ATGACCAATAAGTTGTATGT+AGG | + | 15118:1924-1943 | MS.gene35791:intron | 30.0% | |
| CACACACTTCGTATTTATAA+TGG | - | 15118:1287-1306 | MS.gene35791:intergenic | 30.0% | |
| CTTTACCTTCAGATGAATTA+CGG | + | 15118:706-725 | MS.gene35791:CDS | 30.0% | |
| GTCTTATGTAATGAACTTGA+TGG | + | 15118:2230-2249 | MS.gene35791:intron | 30.0% | |
| TATAGTAACATACAGCTAAC+TGG | - | 15118:4076-4095 | MS.gene35791:intergenic | 30.0% | |
| TGTAAAAATGAACTGGGATA+TGG | + | 15118:2337-2356 | MS.gene35791:intron | 30.0% | |
| TTCGAACTAAATTTGATCTC+AGG | + | 15118:2866-2885 | MS.gene35791:intron | 30.0% | |
| TTTACCTTCAGATGAATTAC+GGG | + | 15118:707-726 | MS.gene35791:CDS | 30.0% | |
| ! | GATCATAAGAAATGTCGATT+TGG | + | 15118:1066-1085 | MS.gene35791:intron | 30.0% |
| !! | ATGGTGTCGTGTTATAATAT+TGG | - | 15118:3609-3628 | MS.gene35791:intergenic | 30.0% |
| !! | TTTAAACTCTAAGACAATGG+TGG | - | 15118:1096-1115 | MS.gene35791:intergenic | 30.0% |
| !!! | CATAGCTTGTATTTTAAAGC+TGG | - | 15118:1468-1487 | MS.gene35791:intergenic | 30.0% |
| !!! | CTTTTTTCGTCTCTTCTTAT+TGG | - | 15118:2630-2649 | MS.gene35791:intergenic | 30.0% |
| !!! | TGTGCACTACTTTTTTATAC+TGG | + | 15118:3650-3669 | MS.gene35791:intron | 30.0% |
| AACAACAAATCATGTTGCAG+AGG | + | 15118:4183-4202 | MS.gene35791:intron | 35.0% | |
| AATAAACCGTCATCATGACT+AGG | + | 15118:3446-3465 | MS.gene35791:intron | 35.0% | |
| ACTTATTGGTCATAATAGCC+GGG | - | 15118:1917-1936 | MS.gene35791:intergenic | 35.0% | |
| AGAGTAAAGGTTCTCTCTAA+AGG | - | 15118:3345-3364 | MS.gene35791:intergenic | 35.0% | |
| ATAAACCGTCATCATGACTA+GGG | + | 15118:3447-3466 | MS.gene35791:intron | 35.0% | |
| ATAGTTGCGTATAAACTGGA+TGG | + | 15118:1814-1833 | MS.gene35791:intron | 35.0% | |
| ATCCACAAACATTCATGCAT+TGG | - | 15118:826-845 | MS.gene35791:intergenic | 35.0% | |
| ATGCACTCTTTATGTAGTAG+TGG | + | 15118:979-998 | MS.gene35791:intron | 35.0% | |
| ATTGGTTAAGCAGCTAAAAG+AGG | + | 15118:1570-1589 | MS.gene35791:intron | 35.0% | |
| CCAAAGAAAAGTTCCAAAGA+TGG | - | 15118:4278-4297 | MS.gene35791:intergenic | 35.0% | |
| CGATATAGTTGCGTATAAAC+TGG | + | 15118:1810-1829 | MS.gene35791:intron | 35.0% | |
| GGTATGGGATATCAAAATAG+AGG | - | 15118:3952-3971 | MS.gene35791:intergenic | 35.0% | |
| GTCACCTACATACAACTTAT+TGG | - | 15118:1931-1950 | MS.gene35791:intergenic | 35.0% | |
| GTGATTTATATCTCATGGAC+CGG | + | 15118:2149-2168 | MS.gene35791:CDS | 35.0% | |
| TAGCACAAATTCAAATGCGT+CGG | + | 15118:665-684 | MS.gene35791:CDS | 35.0% | |
| TAGTTGCGTATAAACTGGAT+GGG | + | 15118:1815-1834 | MS.gene35791:intron | 35.0% | |
| TGACAAGATATAACTCTTGC+AGG | - | 15118:3775-3794 | MS.gene35791:intergenic | 35.0% | |
| TGATTTATATCTCATGGACC+GGG | + | 15118:2150-2169 | MS.gene35791:CDS | 35.0% | |
| TGTAAACTACAGCACACAAA+AGG | - | 15118:3181-3200 | MS.gene35791:intergenic | 35.0% | |
| TTCGTCAATTAGAACCAGAT+TGG | + | 15118:4021-4040 | MS.gene35791:CDS | 35.0% | |
| TTTGACTGTGAACATTTGCA+CGG | + | 15118:3263-3282 | MS.gene35791:intron | 35.0% | |
| TTTGTTTGACCTATGTTTCC+CGG | + | 15118:1896-1915 | MS.gene35791:intron | 35.0% | |
| ! | AGGAGATGGTAATTTCTAGA+AGG | - | 15118:1044-1063 | MS.gene35791:intergenic | 35.0% |
| ! | ATATGTTTGTTGCCATTTGC+TGG | + | 15118:3702-3721 | MS.gene35791:intron | 35.0% |
| ! | GCAGTTCGTTCTGTTTTATA+AGG | - | 15118:4236-4255 | MS.gene35791:intergenic | 35.0% |
| ! | GCTACAGATCACAATTTTGT+CGG | - | 15118:3834-3853 | MS.gene35791:intergenic | 35.0% |
| ! | TAATTAGTAAGCACTAGCCT+AGG | - | 15118:1239-1258 | MS.gene35791:intergenic | 35.0% |
| !!! | AATTTTTTCAGCCAACCTTG+GGG | + | 15118:900-919 | MS.gene35791:intron | 35.0% |
| !!! | CATCAGAATTTTAGGTTCCA+AGG | - | 15118:3752-3771 | MS.gene35791:intergenic | 35.0% |
| !!! | CCATCTTTGGAACTTTTCTT+TGG | + | 15118:4275-4294 | MS.gene35791:CDS | 35.0% |
| !!! | GAATTTTTTCAGCCAACCTT+GGG | + | 15118:899-918 | MS.gene35791:intron | 35.0% |
| !!! | GTGTTCCAGACTTAGTTTTA+TGG | + | 15118:1005-1024 | MS.gene35791:intron | 35.0% |
| !!! | TGAATTTTTTCAGCCAACCT+TGG | + | 15118:898-917 | MS.gene35791:intron | 35.0% |
| AAGTTAACCACCTTCTTGCT+GGG | + | 15118:3089-3108 | MS.gene35791:intron | 40.0% | |
| AGAGAACCTGCATATAGGTA+TGG | - | 15118:3968-3987 | MS.gene35791:intergenic | 40.0% | |
| AGAGTAGCAAGAGGAATACT+AGG | - | 15118:2892-2911 | MS.gene35791:intergenic | 40.0% | |
| AGATCTCCTAATCCTACACA+AGG | + | 15118:597-616 | MS.gene35791:CDS | 40.0% | |
| AGCCAATGCATGAATGTTTG+TGG | + | 15118:821-840 | MS.gene35791:intron | 40.0% | |
| AGCTAACTGGGTGACAATTT+CGG | - | 15118:4063-4082 | MS.gene35791:intergenic | 40.0% | |
| CAACAATACTTCTAGCACAG+AGG | - | 15118:2113-2132 | MS.gene35791:intergenic | 40.0% | |
| CAGTATGTGTGTTCCAAACT+AGG | - | 15118:2775-2794 | MS.gene35791:intergenic | 40.0% | |
| CCATGCAAGGACAATGTAAA+AGG | + | 15118:3509-3528 | MS.gene35791:intron | 40.0% | |
| CCTAGAGTATACAACTTCCT+AGG | + | 15118:1219-1238 | MS.gene35791:intron | 40.0% | |
| CCTAGGAAGTTGTATACTCT+AGG | - | 15118:1222-1241 | MS.gene35791:intergenic | 40.0% | |
| GAAGTTGAGTGAAGGAAGAA+AGG | + | 15118:937-956 | MS.gene35791:CDS | 40.0% | |
| GAGAACCTGCATATAGGTAT+GGG | - | 15118:3967-3986 | MS.gene35791:intergenic | 40.0% | |
| GATATCCCATACCTATATGC+AGG | + | 15118:3959-3978 | MS.gene35791:intron | 40.0% | |
| GATCTCCTAATCCTACACAA+GGG | + | 15118:598-617 | MS.gene35791:CDS | 40.0% | |
| TCATAATAGCCGGGAAACAT+AGG | - | 15118:1908-1927 | MS.gene35791:intergenic | 40.0% | |
| TCGACATTTCTTATGATCGC+AGG | - | 15118:1064-1083 | MS.gene35791:intergenic | 40.0% | |
| TTGTAGCGTTAGAAGAAGCA+GGG | + | 15118:2986-3005 | MS.gene35791:CDS | 40.0% | |
| TTTCTTATGATCGCAGGAGA+TGG | - | 15118:1058-1077 | MS.gene35791:intergenic | 40.0% | |
| TTTGAATTTGTGCTAGCTCC+AGG | - | 15118:660-679 | MS.gene35791:intergenic | 40.0% | |
| ! | CCTTTTACATTGTCCTTGCA+TGG | - | 15118:3512-3531 | MS.gene35791:intergenic | 40.0% |
| ! | CTGTTGCGATTGTTTTCACT+TGG | + | 15118:565-584 | MS.gene35791:CDS | 40.0% |
| ! | CTTGCAGGCATCAGAATTTT+AGG | - | 15118:3760-3779 | MS.gene35791:intergenic | 40.0% |
| ! | TGGGAATACTTGATGACATG+AGG | + | 15118:1834-1853 | MS.gene35791:intron | 40.0% |
| ! | TTGCGATTGTTTTCACTTGG+AGG | + | 15118:568-587 | MS.gene35791:CDS | 40.0% |
| ! | TTTGTGTCGATATGCCAATC+TGG | - | 15118:4038-4057 | MS.gene35791:intergenic | 40.0% |
| !! | CTCTGTGCTAGAAGTATTGT+TGG | + | 15118:2111-2130 | MS.gene35791:CDS | 40.0% |
| !! | CTGTTTTATAAGGCGCTATG+TGG | - | 15118:4226-4245 | MS.gene35791:intergenic | 40.0% |
| !! | GAAGGTAAAGAAGCATCAGA+AGG | - | 15118:696-715 | MS.gene35791:intergenic | 40.0% |
| !! | TGCTCTTTTCAAGACATCCT+TGG | + | 15118:3732-3751 | MS.gene35791:intron | 40.0% |
| CTTGTAGCGTTAGAAGAAGC+AGG | + | 15118:2985-3004 | MS.gene35791:CDS | 45.0% | |
| GAAGTTAACCACCTTCTTGC+TGG | + | 15118:3088-3107 | MS.gene35791:intron | 45.0% | |
| GAGCATATACAGCCAGCAAA+TGG | - | 15118:3717-3736 | MS.gene35791:intergenic | 45.0% | |
| GCTAACTGGGTGACAATTTC+GGG | - | 15118:4062-4081 | MS.gene35791:intergenic | 45.0% | |
| GCTGAAGAGAACCTGCATAT+AGG | - | 15118:3973-3992 | MS.gene35791:intergenic | 45.0% | |
| GGTATTCACTTCAGGTGGTT+TGG | + | 15118:3008-3027 | MS.gene35791:CDS | 45.0% | |
| TCTTCTTGGAGTGATCCTTG+AGG | + | 15118:1957-1976 | MS.gene35791:CDS | 45.0% | |
| TGAGTTCTTTCAGCCAGTCA+AGG | + | 15118:746-765 | MS.gene35791:CDS | 45.0% | |
| TGCTACAACAGAGTAGCAAG+AGG | - | 15118:2901-2920 | MS.gene35791:intergenic | 45.0% | |
| TGTAGCGTTAGAAGAAGCAG+GGG | + | 15118:2987-3006 | MS.gene35791:CDS | 45.0% | |
| TGTGCCCGTAATTCATCTGA+AGG | - | 15118:714-733 | MS.gene35791:intergenic | 45.0% | |
| TGTGTTCAGTGCTCCATCTT+TGG | + | 15118:4262-4281 | MS.gene35791:CDS | 45.0% | |
| !! | AGGTGGTTTGGTTAAGGACA+AGG | + | 15118:3020-3039 | MS.gene35791:CDS | 45.0% |
| !! | CACTTCAGGTGGTTTGGTTA+AGG | + | 15118:3014-3033 | MS.gene35791:CDS | 45.0% |
| !! | TGGAGCACTGAACACATTAG+CGG | - | 15118:4258-4277 | MS.gene35791:intergenic | 45.0% |
| !!! | TTAATTTGTTATATTTTTTT+AGG | + | 15118:1521-1540 | MS.gene35791:intron | 5.0% |
| AACCGTCATCATGACTAGGG+AGG | + | 15118:3450-3469 | MS.gene35791:intron | 50.0% | |
| AAGTAGTCCAGAGGAGCTTC+AGG | + | 15118:1981-2000 | MS.gene35791:CDS | 50.0% | |
| ACCGTCATCATGACTAGGGA+GGG | + | 15118:3451-3470 | MS.gene35791:intron | 50.0% | |
| AGAATGTTAACCAGTGCCCC+CGG | + | 15118:1544-1563 | MS.gene35791:intron | 50.0% | |
| ATATCTCATGGACCGGGTTC+TGG | + | 15118:2156-2175 | MS.gene35791:CDS | 50.0% | |
| ATCCTACACAAGGGAGGCAA+CGG | + | 15118:607-626 | MS.gene35791:CDS | 50.0% | |
| ATTCCTTAACAAGTGCCCCG+GGG | + | 15118:1676-1695 | MS.gene35791:intron | 50.0% | |
| CCTCTGGACTACTTTCCTCA+AGG | - | 15118:1975-1994 | MS.gene35791:intergenic | 50.0% | |
| CCTTGAGGAAAGTAGTCCAG+AGG | + | 15118:1972-1991 | MS.gene35791:CDS | 50.0% | |
| CTCCTAATCCTACACAAGGG+AGG | + | 15118:601-620 | MS.gene35791:CDS | 50.0% | |
| GATCACTCCAAGAAGACGAC+AGG | - | 15118:1953-1972 | MS.gene35791:intergenic | 50.0% | |
| GATTCCTTAACAAGTGCCCC+GGG | + | 15118:1675-1694 | MS.gene35791:intron | 50.0% | |
| GGATTCCTTAACAAGTGCCC+CGG | + | 15118:1674-1693 | MS.gene35791:intron | 50.0% | |
| GGTGGTGCATCTAGTAATCC+TGG | + | 15118:639-658 | MS.gene35791:CDS | 50.0% | |
| GTGAGGCAGAAGTTGAGTGA+AGG | + | 15118:929-948 | MS.gene35791:CDS | 50.0% | |
| TAGCTGCTTAACCAATGCCC+CGG | - | 15118:1566-1585 | MS.gene35791:intergenic | 50.0% | |
| TAGGTGACCTGTCGTCTTCT+TGG | + | 15118:1943-1962 | MS.gene35791:intron | 50.0% | |
| TGCCTCCCTTGTGTAGGATT+AGG | - | 15118:606-625 | MS.gene35791:intergenic | 50.0% | |
| TTTCACACCTGAAGCTCCTC+TGG | - | 15118:1991-2010 | MS.gene35791:intergenic | 50.0% | |
| ! | CTCTTCAGCAGCACTGAGAA+TGG | + | 15118:3984-4003 | MS.gene35791:CDS | 50.0% |
| !! | GAAGCAGGGGTATTCACTTC+AGG | + | 15118:3000-3019 | MS.gene35791:CDS | 50.0% |
| AACACTGCCCAGCAAGAAGG+TGG | - | 15118:3099-3118 | MS.gene35791:intergenic | 55.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | + | 15118:1546-1565 | MS.gene35791:intron | 55.0% | |
| AGCTGCTTAACCAATGCCCC+GGG | - | 15118:1565-1584 | MS.gene35791:intergenic | 55.0% | |
| AGGCAACGGAAAAGGCAAGG+TGG | + | 15118:621-640 | MS.gene35791:CDS | 55.0% | |
| CAACCTTGGGGCAGATAGTG+AGG | + | 15118:912-931 | MS.gene35791:CDS | 55.0% | |
| CACAAGGGAGGCAACGGAAA+AGG | + | 15118:613-632 | MS.gene35791:CDS | 55.0% | |
| CCCCTCCCTAGTCATGATGA+CGG | - | 15118:3455-3474 | MS.gene35791:intergenic | 55.0% | |
| CCGTCATCATGACTAGGGAG+GGG | + | 15118:3452-3471 | MS.gene35791:intron | 55.0% | |
| CGCTTTCGTCATCCAGAACC+CGG | - | 15118:2171-2190 | MS.gene35791:intergenic | 55.0% | |
| CGTCATCATGACTAGGGAGG+GGG | + | 15118:3453-3472 | MS.gene35791:intron | 55.0% | |
| CTCACTATCTGCCCCAAGGT+TGG | - | 15118:914-933 | MS.gene35791:intergenic | 55.0% | |
| GAATGTTAACCAGTGCCCCC+GGG | + | 15118:1545-1564 | MS.gene35791:intron | 55.0% | |
| GTCATCATGACTAGGGAGGG+GGG | + | 15118:3454-3473 | MS.gene35791:intron | 55.0% | |
| TCTTGTTAACCAGTGCCCCC+GGG | - | 15118:1695-1714 | MS.gene35791:intergenic | 55.0% | |
| TGCAACACTGCCCAGCAAGA+AGG | - | 15118:3102-3121 | MS.gene35791:intergenic | 55.0% | |
| TTCCGTTGCCTCCCTTGTGT+AGG | - | 15118:612-631 | MS.gene35791:intergenic | 55.0% | |
| TTCCTTAACAAGTGCCCCGG+GGG | + | 15118:1677-1696 | MS.gene35791:intron | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+CGG | - | 15118:1696-1715 | MS.gene35791:intergenic | 55.0% |
| !! | GCAGGGGTATTCACTTCAGG+TGG | + | 15118:3003-3022 | MS.gene35791:CDS | 55.0% |
| !! | GGTTCTGGATGACGAAAGCG+AGG | + | 15118:2171-2190 | MS.gene35791:CDS | 55.0% |
| CTGCCTCACTATCTGCCCCA+AGG | - | 15118:918-937 | MS.gene35791:intergenic | 60.0% | |
| CTGCTTAACCAATGCCCCGG+GGG | - | 15118:1563-1582 | MS.gene35791:intergenic | 60.0% | |
| CTTGTTAACCAGTGCCCCCG+GGG | - | 15118:1694-1713 | MS.gene35791:intergenic | 60.0% | |
| GCTGCTTAACCAATGCCCCG+GGG | - | 15118:1564-1583 | MS.gene35791:intergenic | 60.0% | |
| GGGAGGCAACGGAAAAGGCA+AGG | + | 15118:618-637 | MS.gene35791:CDS | 60.0% | |
| CGCACTATTGGGGCGGTAGC+TGG | + | 15118:537-556 | MS.gene35791:CDS | 65.0% | |
| ! | TGCCCCCGGGGCACTTGTTA+AGG | - | 15118:1682-1701 | MS.gene35791:intergenic | 65.0% |
| AACCAGTGCCCCCGGGGCAT+TGG | + | 15118:1552-1571 | MS.gene35791:intron | 70.0% | |
| ! | AACAAGTGCCCCGGGGGCAC+TGG | + | 15118:1683-1702 | MS.gene35791:intron | 70.0% |
| ! | AACCAATGCCCCGGGGGCAC+TGG | - | 15118:1557-1576 | MS.gene35791:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15118 | gene | 531 | 4307 | 531 | ID=MS.gene35791 |
| 15118 | mRNA | 531 | 4307 | 531 | ID=MS.gene35791.t1;Parent=MS.gene35791 |
| 15118 | exon | 531 | 767 | 531 | ID=MS.gene35791.t1.exon1;Parent=MS.gene35791.t1 |
| 15118 | CDS | 531 | 767 | 531 | ID=cds.MS.gene35791.t1;Parent=MS.gene35791.t1 |
| 15118 | exon | 911 | 958 | 911 | ID=MS.gene35791.t1.exon2;Parent=MS.gene35791.t1 |
| 15118 | CDS | 911 | 958 | 911 | ID=cds.MS.gene35791.t1;Parent=MS.gene35791.t1 |
| 15118 | exon | 1946 | 2002 | 1946 | ID=MS.gene35791.t1.exon3;Parent=MS.gene35791.t1 |
| 15118 | CDS | 1946 | 2002 | 1946 | ID=cds.MS.gene35791.t1;Parent=MS.gene35791.t1 |
| 15118 | exon | 2091 | 2192 | 2091 | ID=MS.gene35791.t1.exon4;Parent=MS.gene35791.t1 |
| 15118 | CDS | 2091 | 2192 | 2091 | ID=cds.MS.gene35791.t1;Parent=MS.gene35791.t1 |
| 15118 | exon | 2976 | 3041 | 2976 | ID=MS.gene35791.t1.exon5;Parent=MS.gene35791.t1 |
| 15118 | CDS | 2976 | 3041 | 2976 | ID=cds.MS.gene35791.t1;Parent=MS.gene35791.t1 |
| 15118 | exon | 3981 | 4082 | 3981 | ID=MS.gene35791.t1.exon6;Parent=MS.gene35791.t1 |
| 15118 | CDS | 3981 | 4082 | 3981 | ID=cds.MS.gene35791.t1;Parent=MS.gene35791.t1 |
| 15118 | exon | 4203 | 4307 | 4203 | ID=MS.gene35791.t1.exon7;Parent=MS.gene35791.t1 |
| 15118 | CDS | 4203 | 4307 | 4203 | ID=cds.MS.gene35791.t1;Parent=MS.gene35791.t1 |
| Gene Sequence |
| Protein sequence |
