Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38732.t1 | XP_003603014.1 | 97.8 | 408 | 9 | 0 | 1 | 408 | 1 | 408 | 3.40E-229 | 803.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38732.t1 | O48723 | 64.6 | 390 | 137 | 1 | 13 | 402 | 12 | 400 | 3.8e-144 | 512.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38732.t1 | G7J6A8 | 97.8 | 408 | 9 | 0 | 1 | 408 | 1 | 408 | 2.5e-229 | 803.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054623 | MS.gene38732 | 0.803596 | 3.23E-49 | -1.69E-46 |
| MS.gene054626 | MS.gene38732 | 0.9239 | 1.44E-89 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38732.t1 | MTR_3g101400 | 97.794 | 408 | 9 | 0 | 1 | 408 | 1 | 408 | 0.0 | 824 |
| MS.gene38732.t1 | MTR_3g101410 | 90.465 | 409 | 38 | 1 | 1 | 408 | 1 | 409 | 0.0 | 744 |
| MS.gene38732.t1 | MTR_1g019940 | 77.723 | 404 | 88 | 2 | 4 | 405 | 5 | 408 | 0.0 | 661 |
| MS.gene38732.t1 | MTR_1g019940 | 77.475 | 404 | 87 | 3 | 4 | 405 | 5 | 406 | 0.0 | 654 |
| MS.gene38732.t1 | MTR_1g019940 | 77.509 | 289 | 64 | 1 | 118 | 405 | 1 | 289 | 2.37e-171 | 481 |
| MS.gene38732.t1 | MTR_5g017680 | 56.010 | 391 | 167 | 4 | 18 | 405 | 8 | 396 | 8.73e-158 | 450 |
| MS.gene38732.t1 | MTR_5g017670 | 55.759 | 382 | 164 | 3 | 18 | 397 | 14 | 392 | 2.92e-155 | 444 |
| MS.gene38732.t1 | MTR_8g007040 | 45.063 | 395 | 184 | 11 | 13 | 396 | 25 | 397 | 5.75e-101 | 306 |
| MS.gene38732.t1 | MTR_8g007090 | 44.020 | 393 | 191 | 11 | 13 | 396 | 25 | 397 | 2.15e-98 | 300 |
| MS.gene38732.t1 | MTR_8g007095 | 43.766 | 393 | 192 | 11 | 13 | 396 | 25 | 397 | 2.56e-98 | 300 |
| MS.gene38732.t1 | MTR_8g007140 | 47.044 | 389 | 176 | 8 | 10 | 396 | 23 | 383 | 5.40e-95 | 291 |
| MS.gene38732.t1 | MTR_8g007125 | 43.959 | 389 | 193 | 9 | 13 | 396 | 25 | 393 | 6.76e-86 | 268 |
| MS.gene38732.t1 | MTR_8g007065 | 41.282 | 390 | 204 | 10 | 13 | 396 | 25 | 395 | 9.08e-85 | 265 |
| MS.gene38732.t1 | MTR_1g095165 | 29.847 | 392 | 239 | 15 | 20 | 396 | 75 | 445 | 6.19e-42 | 154 |
| MS.gene38732.t1 | MTR_7g094940 | 26.989 | 352 | 204 | 11 | 22 | 357 | 32 | 346 | 1.06e-30 | 121 |
| MS.gene38732.t1 | MTR_1g072190 | 25.959 | 339 | 216 | 11 | 22 | 355 | 32 | 340 | 4.73e-28 | 114 |
| MS.gene38732.t1 | MTR_2g029510 | 27.720 | 386 | 220 | 17 | 20 | 397 | 69 | 403 | 4.79e-23 | 100 |
| MS.gene38732.t1 | MTR_0368s0010 | 27.308 | 260 | 163 | 11 | 142 | 396 | 43 | 281 | 5.49e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38732.t1 | AT2G26560 | 64.450 | 391 | 138 | 1 | 13 | 403 | 12 | 401 | 0.0 | 523 |
| MS.gene38732.t1 | AT4G37070 | 59.278 | 388 | 158 | 0 | 13 | 400 | 12 | 399 | 5.86e-167 | 474 |
| MS.gene38732.t1 | AT4G37060 | 57.107 | 394 | 169 | 0 | 12 | 405 | 11 | 404 | 3.03e-163 | 465 |
| MS.gene38732.t1 | AT4G37070 | 58.602 | 372 | 154 | 0 | 13 | 384 | 12 | 383 | 5.82e-158 | 450 |
| MS.gene38732.t1 | AT4G37070 | 58.602 | 372 | 154 | 0 | 13 | 384 | 12 | 383 | 5.82e-158 | 450 |
| MS.gene38732.t1 | AT4G37060 | 52.941 | 425 | 169 | 1 | 12 | 405 | 11 | 435 | 1.18e-156 | 449 |
| MS.gene38732.t1 | AT4G37050 | 57.037 | 405 | 166 | 2 | 5 | 401 | 20 | 424 | 4.46e-156 | 447 |
| MS.gene38732.t1 | AT4G37070 | 56.452 | 372 | 151 | 1 | 13 | 384 | 12 | 372 | 7.96e-149 | 427 |
| MS.gene38732.t1 | AT5G43590 | 53.197 | 391 | 172 | 5 | 13 | 399 | 7 | 390 | 1.63e-127 | 374 |
| MS.gene38732.t1 | AT5G43590 | 53.197 | 391 | 172 | 5 | 13 | 399 | 74 | 457 | 1.75e-126 | 373 |
| MS.gene38732.t1 | AT2G39220 | 30.175 | 401 | 245 | 16 | 7 | 396 | 92 | 468 | 1.35e-39 | 148 |
| MS.gene38732.t1 | AT3G54950 | 28.721 | 383 | 242 | 12 | 20 | 396 | 98 | 455 | 4.02e-38 | 144 |
| MS.gene38732.t1 | AT4G29800 | 28.750 | 400 | 248 | 15 | 20 | 403 | 121 | 499 | 3.92e-37 | 142 |
| MS.gene38732.t1 | AT4G29800 | 28.678 | 401 | 248 | 15 | 20 | 403 | 121 | 500 | 5.62e-37 | 141 |
| MS.gene38732.t1 | AT3G63200 | 29.022 | 317 | 189 | 11 | 22 | 330 | 32 | 320 | 3.57e-32 | 125 |
Find 100 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAATCTTTCTCCAATT+TGG | 0.154529 | 3.3:-84036547 | None:intergenic |
| TGGACAATGTTCCAAGTAAA+AGG | 0.173001 | 3.3:-84035476 | None:intergenic |
| TTAGATAAACTTTGCCAAAT+TGG | 0.206887 | 3.3:+84036533 | MS.gene38732:CDS |
| ATGTTTGAGCCTATTGAAAA+TGG | 0.238787 | 3.3:+84036605 | MS.gene38732:CDS |
| GGCAGCAAAATGGGGTCTTT+TGG | 0.249313 | 3.3:+84036235 | MS.gene38732:CDS |
| ATTCAAAACTGGCAGCAAAA+TGG | 0.257627 | 3.3:+84036225 | MS.gene38732:CDS |
| TTATAAGATGAGAAAATAAT+TGG | 0.260902 | 3.3:-84035802 | None:intergenic |
| TTGACTAAAGATATCAATTA+AGG | 0.272567 | 3.3:-84036285 | None:intergenic |
| GCATCGACGGTGGTGGTATA+AGG | 0.283252 | 3.3:+84035266 | MS.gene38732:CDS |
| GCTGCTCCTACTTATCTTCC+TGG | 0.297373 | 3.3:+84035883 | MS.gene38732:CDS |
| GTACGTTCCCTTCTGTATCT+TGG | 0.303550 | 3.3:-84035921 | None:intergenic |
| ATTGAAGAAACCAGTATCTA+AGG | 0.307953 | 3.3:+84036565 | MS.gene38732:CDS |
| TTCAAAACTGGCAGCAAAAT+GGG | 0.322622 | 3.3:+84036226 | MS.gene38732:CDS |
| AGGTATTTCCCATCGTATTT+TGG | 0.327115 | 3.3:-84035685 | None:intergenic |
| GAACTTATGCAGGCACTTGC+TGG | 0.336587 | 3.3:+84035627 | MS.gene38732:intron |
| TCTAAATTAACCTTAGATAC+TGG | 0.337016 | 3.3:-84036575 | None:intergenic |
| AGTGGACGTTGTTTATCATT+TGG | 0.339325 | 3.3:-84035430 | None:intergenic |
| GATTACTTTGATGTGATTAC+AGG | 0.344649 | 3.3:+84035367 | MS.gene38732:CDS |
| TAGTCAATCCTCTGGAGATA+TGG | 0.353427 | 3.3:+84036301 | MS.gene38732:CDS |
| GCTATATTCCATGGGTTTGA+TGG | 0.366448 | 3.3:-84036147 | None:intergenic |
| ATTCTTGAAGTTGCGATTCA+AGG | 0.379087 | 3.3:-84035318 | None:intergenic |
| ACAAAAGTTTGATTCAAAAC+TGG | 0.388763 | 3.3:+84036214 | MS.gene38732:CDS |
| GTGTGGTTAGGGAGAAGCTT+GGG | 0.398981 | 3.3:+84035713 | MS.gene38732:CDS |
| AAACGTGGGGATCACAATAT+TGG | 0.404692 | 3.3:-84035761 | None:intergenic |
| AATACCTACACAGTGTGGTT+AGG | 0.406721 | 3.3:+84035701 | MS.gene38732:CDS |
| CAGGCACTTGCTGGGACTGG+TGG | 0.408008 | 3.3:+84035636 | MS.gene38732:intron |
| CATCGACGGTGGTGGTATAA+GGG | 0.412392 | 3.3:+84035267 | MS.gene38732:CDS |
| TGTTTGAGCCTATTGAAAAT+GGG | 0.427789 | 3.3:+84036606 | MS.gene38732:CDS |
| TCTAAGGTTAATTTAGAGAA+TGG | 0.429460 | 3.3:+84036581 | MS.gene38732:CDS |
| GAAATTGTTCAAATCATTAA+CGG | 0.431351 | 3.3:+84035660 | MS.gene38732:CDS |
| CTAATAATCTCATTGGGCAC+TGG | 0.438749 | 3.3:+84036176 | MS.gene38732:CDS |
| AACTTATGCAGGCACTTGCT+GGG | 0.440494 | 3.3:+84035628 | MS.gene38732:intron |
| CAAATTCTGCCTCCCACCTA+TGG | 0.440522 | 3.3:+84035223 | MS.gene38732:CDS |
| AAATTGTTCAAATCATTAAC+GGG | 0.445917 | 3.3:+84035661 | MS.gene38732:CDS |
| TAGAAAACGGCTATATTCCA+TGG | 0.449347 | 3.3:-84036156 | None:intergenic |
| CGTGAGTTCAACCTCATTGA+TGG | 0.454017 | 3.3:+84035943 | MS.gene38732:CDS |
| TCGCAACTTCAAGAATTAGA+TGG | 0.459099 | 3.3:+84035325 | MS.gene38732:CDS |
| ATTGTCAAGATAATTACCTT+AGG | 0.462195 | 3.3:+84036360 | MS.gene38732:CDS |
| GGACAATGTTCCAAGTAAAA+GGG | 0.464623 | 3.3:-84035475 | None:intergenic |
| GATATCTTTAGTCAATCCTC+TGG | 0.480270 | 3.3:+84036293 | MS.gene38732:CDS |
| AGATAATTACCTTAGGATAC+AGG | 0.480809 | 3.3:+84036367 | MS.gene38732:CDS |
| AGGCACTTGCTGGGACTGGT+GGG | 0.481875 | 3.3:+84035637 | MS.gene38732:intron |
| ATGCAGGCACTTGCTGGGAC+TGG | 0.483803 | 3.3:+84035633 | MS.gene38732:intron |
| ATACCTACACAGTGTGGTTA+GGG | 0.485763 | 3.3:+84035702 | MS.gene38732:CDS |
| CCAATGAGATTATTAGAAAA+CGG | 0.491994 | 3.3:-84036169 | None:intergenic |
| AGGAACTCGAGAATAGTTGC+GGG | 0.498265 | 3.3:-84035298 | None:intergenic |
| TGACTAAAGATATCAATTAA+GGG | 0.500555 | 3.3:-84036284 | None:intergenic |
| TTGTAACCAGGAAGATAAGT+AGG | 0.501497 | 3.3:-84035889 | None:intergenic |
| CCAACCAAGAAGCTCTCAAA+AGG | 0.511212 | 3.3:+84036633 | MS.gene38732:CDS |
| TTGCATGGATGCTCGACTCT+CGG | 0.512268 | 3.3:+84035840 | MS.gene38732:CDS |
| GGCACTTGCTGGGACTGGTG+GGG | 0.520089 | 3.3:+84035638 | MS.gene38732:intron |
| GTGGATTTGTGTCTATATCA+AGG | 0.523219 | 3.3:-84036849 | None:intergenic |
| GTAAAAGGGCTTGATATCCT+TGG | 0.530283 | 3.3:-84035461 | None:intergenic |
| TTTGTATTACCTGTATCCTA+AGG | 0.533834 | 3.3:-84036376 | None:intergenic |
| CTTGAGTAACAGTAGCAAGA+TGG | 0.544501 | 3.3:-84036331 | None:intergenic |
| GTCACTAAGTTTCCATAGGT+GGG | 0.548697 | 3.3:-84035235 | None:intergenic |
| AGTCACTAAGTTTCCATAGG+TGG | 0.549310 | 3.3:-84035236 | None:intergenic |
| GATCAAGAAAGCCCCTTGCA+TGG | 0.552645 | 3.3:+84035825 | MS.gene38732:CDS |
| TCAAGGTCTTGTTAGTGTGA+GGG | 0.554514 | 3.3:-84036832 | None:intergenic |
| AATAGTCACTAAGTTTCCAT+AGG | 0.559064 | 3.3:-84035239 | None:intergenic |
| ATCAACTGAAGAATCTGTAC+CGG | 0.561415 | 3.3:-84036492 | None:intergenic |
| AGAAAACGGCTATATTCCAT+GGG | 0.563089 | 3.3:-84036155 | None:intergenic |
| GTGATTACAGGAACAAGTAC+AGG | 0.563901 | 3.3:+84035379 | MS.gene38732:CDS |
| GAGAGTCGAGCATCCATGCA+AGG | 0.566902 | 3.3:-84035838 | None:intergenic |
| AATTAGATGGTGAATCTGCT+AGG | 0.567945 | 3.3:+84035338 | MS.gene38732:CDS |
| AAGATAAGTAGGAGCAGCAG+AGG | 0.572780 | 3.3:-84035878 | None:intergenic |
| ATCAAGGTCTTGTTAGTGTG+AGG | 0.573367 | 3.3:-84036833 | None:intergenic |
| AGAGTCGAGCATCCATGCAA+GGG | 0.575582 | 3.3:-84035837 | None:intergenic |
| TGGTGTTTGTGCAAATAATC+CGG | 0.582343 | 3.3:+84035966 | MS.gene38732:CDS |
| CAAGGTCTTGTTAGTGTGAG+GGG | 0.582444 | 3.3:-84036831 | None:intergenic |
| ATCGACGGTGGTGGTATAAG+GGG | 0.588158 | 3.3:+84035268 | MS.gene38732:CDS |
| ATTCTAAGCATCGACGGTGG+TGG | 0.589977 | 3.3:+84035259 | MS.gene38732:CDS |
| CACAAACACCACCATCAATG+AGG | 0.592240 | 3.3:-84035954 | None:intergenic |
| GTTTGAGCCTATTGAAAATG+GGG | 0.597788 | 3.3:+84036607 | MS.gene38732:CDS |
| TTCAAGAACCAAGATACAGA+AGG | 0.598347 | 3.3:+84035913 | MS.gene38732:CDS |
| ATCATTTGGAGCACTTAACA+TGG | 0.599256 | 3.3:-84035416 | None:intergenic |
| ATGCAGGATGATACATTGAC+CGG | 0.600764 | 3.3:+84036473 | MS.gene38732:intron |
| TAACGGGACCAAAATACGAT+GGG | 0.602205 | 3.3:+84035677 | MS.gene38732:CDS |
| TCAAAACTGGCAGCAAAATG+GGG | 0.603239 | 3.3:+84036227 | MS.gene38732:CDS |
| AAGGAACTCGAGAATAGTTG+CGG | 0.605964 | 3.3:-84035299 | None:intergenic |
| AGTGTGGTTAGGGAGAAGCT+TGG | 0.607976 | 3.3:+84035712 | MS.gene38732:CDS |
| TGGTTCTTGAAGTTGTAACC+AGG | 0.626960 | 3.3:-84035901 | None:intergenic |
| TGTGGTTAGGGAGAAGCTTG+GGG | 0.637104 | 3.3:+84035714 | MS.gene38732:CDS |
| TCAAGAACCAAGATACAGAA+GGG | 0.637936 | 3.3:+84035914 | MS.gene38732:CDS |
| TTAACGGGACCAAAATACGA+TGG | 0.640656 | 3.3:+84035676 | MS.gene38732:CDS |
| TAAGGGAGTTGAACCACCGT+GGG | 0.644389 | 3.3:-84036267 | None:intergenic |
| TCTCCCTAACCACACTGTGT+AGG | 0.645782 | 3.3:-84035705 | None:intergenic |
| GAGTCGAGCATCCATGCAAG+GGG | 0.652281 | 3.3:-84035836 | None:intergenic |
| GAAATCAACCATATCTCCAG+AGG | 0.656859 | 3.3:-84036309 | None:intergenic |
| GATGTCTTTATGTCAAACGT+GGG | 0.664930 | 3.3:-84035775 | None:intergenic |
| TGATGTCTTTATGTCAAACG+TGG | 0.670126 | 3.3:-84035776 | None:intergenic |
| GTGACTATTCTAAGCATCGA+CGG | 0.670875 | 3.3:+84035253 | MS.gene38732:CDS |
| ACTAAGTTTCCATAGGTGGG+AGG | 0.689641 | 3.3:-84035232 | None:intergenic |
| ATTACAGGAACAAGTACAGG+TGG | 0.697018 | 3.3:+84035382 | MS.gene38732:CDS |
| TTAAGGGAGTTGAACCACCG+TGG | 0.712500 | 3.3:-84036268 | None:intergenic |
| GAGTTCAACCTCATTGATGG+TGG | 0.718974 | 3.3:+84035946 | MS.gene38732:CDS |
| TTGGATTGGTTAACCCACGG+TGG | 0.722351 | 3.3:+84036254 | MS.gene38732:CDS |
| TGGGAAATACCTACACAGTG+TGG | 0.740267 | 3.3:+84035696 | MS.gene38732:CDS |
| ATGTCTTTATGTCAAACGTG+GGG | 0.746412 | 3.3:-84035774 | None:intergenic |
| ACTATTCTAAGCATCGACGG+TGG | 0.761071 | 3.3:+84035256 | MS.gene38732:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTCAATGATTATATTTA+TGG | + | chr3.3:84036666-84036685 | MS.gene38732:intron | 15.0% |
| !! | TTATAAGATGAGAAAATAAT+TGG | - | chr3.3:84035805-84035824 | None:intergenic | 15.0% |
| !!! | AATTTTCTACATTTTTTTTG+AGG | - | chr3.3:84036717-84036736 | None:intergenic | 15.0% |
| !! | AAATTGTTCAAATCATTAAC+GGG | + | chr3.3:84035661-84035680 | MS.gene38732:CDS | 20.0% |
| !! | GAAATTGTTCAAATCATTAA+CGG | + | chr3.3:84035660-84035679 | MS.gene38732:CDS | 20.0% |
| !! | TGACTAAAGATATCAATTAA+GGG | - | chr3.3:84036287-84036306 | None:intergenic | 20.0% |
| !! | TTGACTAAAGATATCAATTA+AGG | - | chr3.3:84036288-84036307 | None:intergenic | 20.0% |
| !!! | ATTAGTCATTTTCAATATAC+CGG | - | chr3.3:84035988-84036007 | None:intergenic | 20.0% |
| !!! | TTTATCTAAATTCTCTTTTG+TGG | - | chr3.3:84036522-84036541 | None:intergenic | 20.0% |
| ! | ACAAAAGTTTGATTCAAAAC+TGG | + | chr3.3:84036214-84036233 | MS.gene38732:CDS | 25.0% |
| ! | ATTGTCAAGATAATTACCTT+AGG | + | chr3.3:84036360-84036379 | MS.gene38732:CDS | 25.0% |
| ! | CCAATGAGATTATTAGAAAA+CGG | - | chr3.3:84036172-84036191 | None:intergenic | 25.0% |
| ! | GTTATTCAATGAACTTAAAG+TGG | - | chr3.3:84035571-84035590 | None:intergenic | 25.0% |
| ! | TCAATAATCTTTCTCCAATT+TGG | - | chr3.3:84036550-84036569 | None:intergenic | 25.0% |
| ! | TCTAAATTAACCTTAGATAC+TGG | - | chr3.3:84036578-84036597 | None:intergenic | 25.0% |
| ! | TTAGATAAACTTTGCCAAAT+TGG | + | chr3.3:84036533-84036552 | MS.gene38732:CDS | 25.0% |
| !! | CGTTTTCTAATAATCTCATT+GGG | + | chr3.3:84036170-84036189 | MS.gene38732:CDS | 25.0% |
| !! | TATTTGATGATCAATGTTCT+AGG | + | chr3.3:84036064-84036083 | MS.gene38732:intron | 25.0% |
| !! | TCAAACTTTTGTTCATTCTT+TGG | - | chr3.3:84036206-84036225 | None:intergenic | 25.0% |
| !! | TCTAAGGTTAATTTAGAGAA+TGG | + | chr3.3:84036581-84036600 | MS.gene38732:CDS | 25.0% |
| AATAGTCACTAAGTTTCCAT+AGG | - | chr3.3:84035242-84035261 | None:intergenic | 30.0% | |
| ACGATATGAGAATTGAGAAA+TGG | - | chr3.3:84036447-84036466 | None:intergenic | 30.0% | |
| AGATAATTACCTTAGGATAC+AGG | + | chr3.3:84036367-84036386 | MS.gene38732:CDS | 30.0% | |
| ATATCAACATTAATGCATGC+AGG | + | chr3.3:84036762-84036781 | MS.gene38732:intron | 30.0% | |
| ATGTTTGAGCCTATTGAAAA+TGG | + | chr3.3:84036605-84036624 | MS.gene38732:CDS | 30.0% | |
| ATTGAAGAAACCAGTATCTA+AGG | + | chr3.3:84036565-84036584 | MS.gene38732:CDS | 30.0% | |
| CAAAAATACTATCACAAGAG+AGG | + | chr3.3:84036789-84036808 | MS.gene38732:CDS | 30.0% | |
| CTCATATCGTATAAAAATGC+AGG | + | chr3.3:84036457-84036476 | MS.gene38732:intron | 30.0% | |
| GATTACTTTGATGTGATTAC+AGG | + | chr3.3:84035367-84035386 | MS.gene38732:CDS | 30.0% | |
| TGTTTGAGCCTATTGAAAAT+GGG | + | chr3.3:84036606-84036625 | MS.gene38732:CDS | 30.0% | |
| TTTGTATTACCTGTATCCTA+AGG | - | chr3.3:84036379-84036398 | None:intergenic | 30.0% | |
| ! | AGCTCTCAAAAGGTATATTA+TGG | + | chr3.3:84036643-84036662 | MS.gene38732:intron | 30.0% |
| ! | ATGTATACGTACTTTTGTTG+TGG | - | chr3.3:84035511-84035530 | None:intergenic | 30.0% |
| ! | CCGTTTTCTAATAATCTCAT+TGG | + | chr3.3:84036169-84036188 | MS.gene38732:CDS | 30.0% |
| !! | TGTATACGTACTTTTGTTGT+GGG | - | chr3.3:84035510-84035529 | None:intergenic | 30.0% |
| !! | TTTTGTTGTGGGAAAATCTT+TGG | - | chr3.3:84035499-84035518 | None:intergenic | 30.0% |
| AATTAGATGGTGAATCTGCT+AGG | + | chr3.3:84035338-84035357 | MS.gene38732:CDS | 35.0% | |
| AGAAAACGGCTATATTCCAT+GGG | - | chr3.3:84036158-84036177 | None:intergenic | 35.0% | |
| AGTGGACGTTGTTTATCATT+TGG | - | chr3.3:84035433-84035452 | None:intergenic | 35.0% | |
| ATCAACTGAAGAATCTGTAC+CGG | - | chr3.3:84036495-84036514 | None:intergenic | 35.0% | |
| ATGTCTTTATGTCAAACGTG+GGG | - | chr3.3:84035777-84035796 | None:intergenic | 35.0% | |
| ATTAACGGTTGAACTTATGC+AGG | + | chr3.3:84035617-84035636 | MS.gene38732:intron | 35.0% | |
| ATTCAAAACTGGCAGCAAAA+TGG | + | chr3.3:84036225-84036244 | MS.gene38732:CDS | 35.0% | |
| ATTCTTGAAGTTGCGATTCA+AGG | - | chr3.3:84035321-84035340 | None:intergenic | 35.0% | |
| GATATCTTTAGTCAATCCTC+TGG | + | chr3.3:84036293-84036312 | MS.gene38732:CDS | 35.0% | |
| GATGTCTTTATGTCAAACGT+GGG | - | chr3.3:84035778-84035797 | None:intergenic | 35.0% | |
| GGACAATGTTCCAAGTAAAA+GGG | - | chr3.3:84035478-84035497 | None:intergenic | 35.0% | |
| GTTTGAGCCTATTGAAAATG+GGG | + | chr3.3:84036607-84036626 | MS.gene38732:CDS | 35.0% | |
| TAGAAAACGGCTATATTCCA+TGG | - | chr3.3:84036159-84036178 | None:intergenic | 35.0% | |
| TCAAGAACCAAGATACAGAA+GGG | + | chr3.3:84035914-84035933 | MS.gene38732:CDS | 35.0% | |
| TCGCAACTTCAAGAATTAGA+TGG | + | chr3.3:84035325-84035344 | MS.gene38732:CDS | 35.0% | |
| TGATGTCTTTATGTCAAACG+TGG | - | chr3.3:84035779-84035798 | None:intergenic | 35.0% | |
| TGGACAATGTTCCAAGTAAA+AGG | - | chr3.3:84035479-84035498 | None:intergenic | 35.0% | |
| TGGTGTTTGTGCAAATAATC+CGG | + | chr3.3:84035966-84035985 | MS.gene38732:CDS | 35.0% | |
| TTCAAAACTGGCAGCAAAAT+GGG | + | chr3.3:84036226-84036245 | MS.gene38732:CDS | 35.0% | |
| TTCAAGAACCAAGATACAGA+AGG | + | chr3.3:84035913-84035932 | MS.gene38732:CDS | 35.0% | |
| TTGTAACCAGGAAGATAAGT+AGG | - | chr3.3:84035892-84035911 | None:intergenic | 35.0% | |
| ! | AGGTATTTCCCATCGTATTT+TGG | - | chr3.3:84035688-84035707 | None:intergenic | 35.0% |
| ! | ATCATTTGGAGCACTTAACA+TGG | - | chr3.3:84035419-84035438 | None:intergenic | 35.0% |
| !! | TATACCTTTTGAGAGCTTCT+TGG | - | chr3.3:84036640-84036659 | None:intergenic | 35.0% |
| AAACGTGGGGATCACAATAT+TGG | - | chr3.3:84035764-84035783 | None:intergenic | 40.0% | |
| AAGGAACTCGAGAATAGTTG+CGG | - | chr3.3:84035302-84035321 | None:intergenic | 40.0% | |
| AATACCTACACAGTGTGGTT+AGG | + | chr3.3:84035701-84035720 | MS.gene38732:CDS | 40.0% | |
| AGTCACTAAGTTTCCATAGG+TGG | - | chr3.3:84035239-84035258 | None:intergenic | 40.0% | |
| ATACCTACACAGTGTGGTTA+GGG | + | chr3.3:84035702-84035721 | MS.gene38732:CDS | 40.0% | |
| ATATCCTTGGCAGCAAAAAG+TGG | - | chr3.3:84035451-84035470 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+CGG | + | chr3.3:84036473-84036492 | MS.gene38732:intron | 40.0% | |
| ATTACAGGAACAAGTACAGG+TGG | + | chr3.3:84035382-84035401 | MS.gene38732:CDS | 40.0% | |
| CTAATAATCTCATTGGGCAC+TGG | + | chr3.3:84036176-84036195 | MS.gene38732:CDS | 40.0% | |
| CTTGAGTAACAGTAGCAAGA+TGG | - | chr3.3:84036334-84036353 | None:intergenic | 40.0% | |
| GAAATCAACCATATCTCCAG+AGG | - | chr3.3:84036312-84036331 | None:intergenic | 40.0% | |
| GCTATATTCCATGGGTTTGA+TGG | - | chr3.3:84036150-84036169 | None:intergenic | 40.0% | |
| GTAAAAGGGCTTGATATCCT+TGG | - | chr3.3:84035464-84035483 | None:intergenic | 40.0% | |
| GTCACTAAGTTTCCATAGGT+GGG | - | chr3.3:84035238-84035257 | None:intergenic | 40.0% | |
| GTGATTACAGGAACAAGTAC+AGG | + | chr3.3:84035379-84035398 | MS.gene38732:CDS | 40.0% | |
| TAACGGGACCAAAATACGAT+GGG | + | chr3.3:84035677-84035696 | MS.gene38732:CDS | 40.0% | |
| TCAAAACTGGCAGCAAAATG+GGG | + | chr3.3:84036227-84036246 | MS.gene38732:CDS | 40.0% | |
| TGGTTCTTGAAGTTGTAACC+AGG | - | chr3.3:84035904-84035923 | None:intergenic | 40.0% | |
| TTAACGGGACCAAAATACGA+TGG | + | chr3.3:84035676-84035695 | MS.gene38732:CDS | 40.0% | |
| ! | CAAAATGGGGTCTTTTGGAT+TGG | + | chr3.3:84036240-84036259 | MS.gene38732:CDS | 40.0% |
| ! | CTTTTATGCCATCAAACCCA+TGG | + | chr3.3:84036139-84036158 | MS.gene38732:CDS | 40.0% |
| ! | GGATATCAAGCCCTTTTACT+TGG | + | chr3.3:84035465-84035484 | MS.gene38732:CDS | 40.0% |
| ! | TAGTCAATCCTCTGGAGATA+TGG | + | chr3.3:84036301-84036320 | MS.gene38732:CDS | 40.0% |
| ! | TTGGTCTCCCCATTTTCAAT+AGG | - | chr3.3:84036617-84036636 | None:intergenic | 40.0% |
| !! | ATCAAGGTCTTGTTAGTGTG+AGG | - | chr3.3:84036836-84036855 | None:intergenic | 40.0% |
| !! | GTGACTATTCTAAGCATCGA+CGG | + | chr3.3:84035253-84035272 | MS.gene38732:CDS | 40.0% |
| !! | TCAAGGTCTTGTTAGTGTGA+GGG | - | chr3.3:84036835-84036854 | None:intergenic | 40.0% |
| !!! | CTTTTGGATTGGTTAACCCA+CGG | + | chr3.3:84036251-84036270 | MS.gene38732:CDS | 40.0% |
| AACTTATGCAGGCACTTGCT+GGG | + | chr3.3:84035628-84035647 | MS.gene38732:intron | 45.0% | |
| AAGATAAGTAGGAGCAGCAG+AGG | - | chr3.3:84035881-84035900 | None:intergenic | 45.0% | |
| ACTAAGTTTCCATAGGTGGG+AGG | - | chr3.3:84035235-84035254 | None:intergenic | 45.0% | |
| AGGAACTCGAGAATAGTTGC+GGG | - | chr3.3:84035301-84035320 | None:intergenic | 45.0% | |
| AGTGGCTGCATAAGTGCAAT+TGG | - | chr3.3:84035553-84035572 | None:intergenic | 45.0% | |
| CACAAACACCACCATCAATG+AGG | - | chr3.3:84035957-84035976 | None:intergenic | 45.0% | |
| CCAACCAAGAAGCTCTCAAA+AGG | + | chr3.3:84036633-84036652 | MS.gene38732:CDS | 45.0% | |
| CGTGAGTTCAACCTCATTGA+TGG | + | chr3.3:84035943-84035962 | MS.gene38732:CDS | 45.0% | |
| GAGTTCAACCTCATTGATGG+TGG | + | chr3.3:84035946-84035965 | MS.gene38732:CDS | 45.0% | |
| GTACGTTCCCTTCTGTATCT+TGG | - | chr3.3:84035924-84035943 | None:intergenic | 45.0% | |
| TGGGAAATACCTACACAGTG+TGG | + | chr3.3:84035696-84035715 | MS.gene38732:CDS | 45.0% | |
| !! | ACTATTCTAAGCATCGACGG+TGG | + | chr3.3:84035256-84035275 | MS.gene38732:CDS | 45.0% |
| !! | CAAGGTCTTGTTAGTGTGAG+GGG | - | chr3.3:84036834-84036853 | None:intergenic | 45.0% |
| !! | CCTTTTGAGAGCTTCTTGGT+TGG | - | chr3.3:84036636-84036655 | None:intergenic | 45.0% |
| !!! | ATAAATATAATTTGTATTAA+CGG | + | chr3.3:84035602-84035621 | MS.gene38732:intron | 5.0% |
| AGAGTCGAGCATCCATGCAA+GGG | - | chr3.3:84035840-84035859 | None:intergenic | 50.0% | |
| AGTGTGGTTAGGGAGAAGCT+TGG | + | chr3.3:84035712-84035731 | MS.gene38732:CDS | 50.0% | |
| CAAATTCTGCCTCCCACCTA+TGG | + | chr3.3:84035223-84035242 | MS.gene38732:CDS | 50.0% | |
| GAACTTATGCAGGCACTTGC+TGG | + | chr3.3:84035627-84035646 | MS.gene38732:intron | 50.0% | |
| GATCAAGAAAGCCCCTTGCA+TGG | + | chr3.3:84035825-84035844 | MS.gene38732:CDS | 50.0% | |
| GCTGCTCCTACTTATCTTCC+TGG | + | chr3.3:84035883-84035902 | MS.gene38732:CDS | 50.0% | |
| GTGTGGTTAGGGAGAAGCTT+GGG | + | chr3.3:84035713-84035732 | MS.gene38732:CDS | 50.0% | |
| TAAGGGAGTTGAACCACCGT+GGG | - | chr3.3:84036270-84036289 | None:intergenic | 50.0% | |
| TCTCCCTAACCACACTGTGT+AGG | - | chr3.3:84035708-84035727 | None:intergenic | 50.0% | |
| TGTGGTTAGGGAGAAGCTTG+GGG | + | chr3.3:84035714-84035733 | MS.gene38732:CDS | 50.0% | |
| TTAAGGGAGTTGAACCACCG+TGG | - | chr3.3:84036271-84036290 | None:intergenic | 50.0% | |
| TTGCATGGATGCTCGACTCT+CGG | + | chr3.3:84035840-84035859 | MS.gene38732:CDS | 50.0% | |
| ! | ATCGACGGTGGTGGTATAAG+GGG | + | chr3.3:84035268-84035287 | MS.gene38732:CDS | 50.0% |
| ! | CATCGACGGTGGTGGTATAA+GGG | + | chr3.3:84035267-84035286 | MS.gene38732:CDS | 50.0% |
| ! | GGCAGCAAAATGGGGTCTTT+TGG | + | chr3.3:84036235-84036254 | MS.gene38732:CDS | 50.0% |
| !! | ATTCTAAGCATCGACGGTGG+TGG | + | chr3.3:84035259-84035278 | MS.gene38732:CDS | 50.0% |
| !! | TTGGATTGGTTAACCCACGG+TGG | + | chr3.3:84036254-84036273 | MS.gene38732:CDS | 50.0% |
| !!! | ACGTCCACTTTTTGCTGCCA+AGG | + | chr3.3:84035444-84035463 | MS.gene38732:CDS | 50.0% |
| GAGAGTCGAGCATCCATGCA+AGG | - | chr3.3:84035841-84035860 | None:intergenic | 55.0% | |
| GAGTCGAGCATCCATGCAAG+GGG | - | chr3.3:84035839-84035858 | None:intergenic | 55.0% | |
| ! | GCATCGACGGTGGTGGTATA+AGG | + | chr3.3:84035266-84035285 | MS.gene38732:CDS | 55.0% |
| ! | AGGCACTTGCTGGGACTGGT+GGG | + | chr3.3:84035637-84035656 | MS.gene38732:intron | 60.0% |
| ! | ATGCAGGCACTTGCTGGGAC+TGG | + | chr3.3:84035633-84035652 | MS.gene38732:intron | 60.0% |
| ! | CAGGCACTTGCTGGGACTGG+TGG | + | chr3.3:84035636-84035655 | MS.gene38732:intron | 65.0% |
| ! | GGCACTTGCTGGGACTGGTG+GGG | + | chr3.3:84035638-84035657 | MS.gene38732:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84035196 | 84036859 | 84035196 | ID=MS.gene38732 |
| chr3.3 | mRNA | 84035196 | 84036859 | 84035196 | ID=MS.gene38732.t1;Parent=MS.gene38732 |
| chr3.3 | exon | 84035196 | 84035518 | 84035196 | ID=MS.gene38732.t1.exon1;Parent=MS.gene38732.t1 |
| chr3.3 | CDS | 84035196 | 84035518 | 84035196 | ID=cds.MS.gene38732.t1;Parent=MS.gene38732.t1 |
| chr3.3 | exon | 84035639 | 84035987 | 84035639 | ID=MS.gene38732.t1.exon2;Parent=MS.gene38732.t1 |
| chr3.3 | CDS | 84035639 | 84035987 | 84035639 | ID=cds.MS.gene38732.t1;Parent=MS.gene38732.t1 |
| chr3.3 | exon | 84036086 | 84036388 | 84036086 | ID=MS.gene38732.t1.exon3;Parent=MS.gene38732.t1 |
| chr3.3 | CDS | 84036086 | 84036388 | 84036086 | ID=cds.MS.gene38732.t1;Parent=MS.gene38732.t1 |
| chr3.3 | exon | 84036479 | 84036654 | 84036479 | ID=MS.gene38732.t1.exon4;Parent=MS.gene38732.t1 |
| chr3.3 | CDS | 84036479 | 84036654 | 84036479 | ID=cds.MS.gene38732.t1;Parent=MS.gene38732.t1 |
| chr3.3 | exon | 84036784 | 84036859 | 84036784 | ID=MS.gene38732.t1.exon5;Parent=MS.gene38732.t1 |
| chr3.3 | CDS | 84036784 | 84036859 | 84036784 | ID=cds.MS.gene38732.t1;Parent=MS.gene38732.t1 |
| Gene Sequence |
| Protein sequence |
