AlfalfaGEDB | MS.gene054700

M. sativa cultivar XinJiangDaYe / MS.gene054700

KEGG: K13941
GO: GO:0003674 GO:0003824 GO:0003848 GO:0004156 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016772 GO:0016778 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00809.25 PF01288.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054700.t1	XP_003614113.1	96.1	507	20	0	1	507	1	507	5.50E-277	963

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054700.t1	O04862	91.1	507	45	0	1	507	1	507	1.3e-266	919.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054700.t1	G7JY17	96.1	507	20	0	1	507	1	507	4.0e-277	963.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene054700	MS.gene035486	PPI
MS.gene054700	MS.gene95485	PPI
MS.gene054700	MS.gene67483	PPI
MS.gene054700	MS.gene93333	PPI
MS.gene054700	MS.gene040757	PPI
MS.gene054700	MS.gene073734	PPI
MS.gene59503	MS.gene054700	PPI
MS.gene64804	MS.gene054700	PPI
MS.gene92930	MS.gene054700	PPI
MS.gene99262	MS.gene054700	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054700.t1	MTR_5g044980	95.866	508	21	0	1	508	1	508	0.0	1002
MS.gene054700.t1	MTR_0076s0050	57.609	92	35	3	100	190	78	166	2.88e-26	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene054700.t1	AT4G30000	69.427	471	144	0	37	507	80	550	714
MS.gene054700.t1	AT4G30000	69.379	467	143	0	37	503	80	546	704
MS.gene054700.t1	AT1G69190	68.577	471	144	4	41	507	9	479	680

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Find 125 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTGAGAAGGACAT+GGG	0.639820	5.3:-32626817	MS.gene054700:CDS
AAACAGCAGACTTCACAGAC+TGG	0.598220	5.3:+32626416	None:intergenic
AAATGTCAGGAATCCCGGCA+TGG	0.636653	5.3:-32625982	MS.gene054700:CDS
AACCTGCGCGTATAATTCTG+AGG	0.633515	5.3:+32626015	None:intergenic
AAGGACATGGGCCGTACTGA+CGG	0.590366	5.3:-32626805	MS.gene054700:CDS
AAGGTATGGTCCAAGGCCAA+TGG	0.579739	5.3:-32626779	MS.gene054700:CDS
AATAAAATGTCCAAGTCCAT+TGG	0.499237	5.3:+32626763	None:intergenic
ACAGAGATTCTCGATGCCAT+CGG	0.617433	5.3:+32626328	None:intergenic
ACATACCTTCCTCTCCAATA+AGG	0.288708	5.3:+32626545	None:intergenic
ACATTACAGCTTCCAGGACA+GGG	0.587554	5.3:+32626281	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAATTGAGAAGGACAT+GGG	-	chr5.3:32627431-32627450	MS.gene054700:intron	30.0%
AATAAAATGTCCAAGTCCAT+TGG	+	chr5.3:32627488-32627507	None:intergenic	30.0%
AATGCATCATGGGAAAAATT+AGG	-	chr5.3:32627671-32627690	MS.gene054700:intron	30.0%
AGTACCTCATGAAAGAATTT+GGG	-	chr5.3:32627544-32627563	MS.gene054700:intron	30.0%
AGTTATCAATATAAGCGGTT+TGG	-	chr5.3:32626100-32626119	MS.gene054700:CDS	30.0%
CAAAACCAAATATGTGTATG+TGG	-	chr5.3:32626077-32626096	MS.gene054700:CDS	30.0%
CCTAAAAATCTCTTTCTTGA+AGG	+	chr5.3:32628430-32628449	None:intergenic	30.0%
GAAAACTGAAGACAATTTAG+AGG	-	chr5.3:32628324-32628343	MS.gene054700:intron	30.0%
GCATCATGAGATAATTTGAT+TGG	-	chr5.3:32625898-32625917	MS.gene054700:CDS	30.0%
GTTATCAATATAAGCGGTTT+GGG	-	chr5.3:32626101-32626120	MS.gene054700:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	32625655	32628615	32625655	ID=MS.gene054700
chr5.3	mRNA	32625655	32628615	32625655	ID=MS.gene054700.t1;Parent=MS.gene054700
chr5.3	exon	32628549	32628615	32628549	ID=MS.gene054700.t1.exon1;Parent=MS.gene054700.t1
chr5.3	CDS	32628549	32628615	32628549	ID=cds.MS.gene054700.t1;Parent=MS.gene054700.t1
chr5.3	exon	32625655	32627117	32625655	ID=MS.gene054700.t1.exon2;Parent=MS.gene054700.t1
chr5.3	CDS	32625655	32627117	32625655	ID=cds.MS.gene054700.t1;Parent=MS.gene054700.t1

Gene Sequence

>MS.gene054700

ATGAGTATACTTAAGTACCTGAGCGCGCGCAGGAGTCAGCTCTGTGCTGCAAGAAACTACCTTAAAGGTAATGTAAACTGATTGTACTTAAGGAAGCTGCTATTTTGTGTACAACCCTGAAATTTCTATCATCTAATAGAGGAAGAGATTAATTTATATGCACTGACGGTGTAAAAAAAAACATGAGTCACAATCAAATTATACTATTTCCAAAGTTTTTTTAGGAATCAACCTTAGAAAGTGGCATCATGAGATAATTTGATTGGATGCATGTGTAAAAAAGTTTTAGACCGTCGATGTATACAAAATTAAAACCATATAGATATGGGAAAGCAAGAGAGACTGGATTGAAGTTTGTTTCTTTTCAATGCCATGTGAATCTGTGTTGAGTGATGTGGTGGTGGCATAGTGTTGCTCATAGGCAAAACCAAATATGTGTATGTGGAGTTATCAATATAAGCGGTTTGGGAGATGTAGGATTAGCTTGAGATTTGGTTCGTATGAAATATGTATGACTTACAGGAAACCAAAAAGATGAGAACAGAGTAGTAAACAGAGAGAAAGGCGCATACACTTAACTCTAGTTTAATAAATCTTCGATTACTAAACAGAAATATTCACTTTTGTTCAAATTTTCAACACGTGGATCCAACCCAGCAAGCAGACCAGGCTGTATCCAACGCTCAAAAAACCATTTAAACCCATGCTTGAGTAATTTATGGCCATTTGTATACACTTTTCTGTAAAATAAAACCAACATCCCAAAGCCACTCACCTTTTTACCTTTTCTGTAAAATAAAATCAGCATTCCACTCCACTCTAGCCTTTTTCGTTCATTTTCGGCTAGAAATTATAATTTGTGAAGCATGCTGGCTGCAGCTTCTACCACCATTCACCATCTTCAAACTTGTTATAATAACATTACATCTACAAGCCATTCCGAAACTGTCAATCTCTCTCCGTGCAAGAATGAGATTTAGGGATCAAAGTCATTGTAAAGTTTGATTTGAAGGTTATTTTTTTGAAATGTAAAGTTAGTTATTGAATTATTATAACTAAAGAGGTGAATAAAATAATATTATTTAAGAGAGAGTCGTAATAAGATGATGATACTATTTTTTAAGAAAATTTATTAACTACACATTTTTAGGGCATTGTTTTTAGAGCTGGCCTTGGTTAGTGAATATTTTTTTCTTTTTGTTTAAAGGTTCTTAAACCCAAACATTGTCATCTACCGATACTCACGGGTGGAGATACGGAGTGGTTTCTTTTCTTGGTTTTCCTACAATACTTCTATAGTTATGCGATTAAGAAATAAGTTCTTTTAGCTTTCTAATCCACAGACGGTACATAAACTGGTTTTTTGTATTGCCAAGTTTCATAATAAAAGGATATAATCAATCTAGAAAGAAGATTATCAGAGTTCATCAGTTTTGGCATACCCAATCAAAGCCTATTATTTACAAACATTATTTTTTTATTTTATTTTTCCTTGCAGTACTCGGATTGTCATCTCTTCACACAGCTCCAAACTCCTCTGTTGAACTTCACACTCGAGATGAGGAAGTAGTGATTGCTTTGGGAAGTAATGTTGGCGATAGACTACAAAACTTCAAGGAAGCCTTGAAATTGATGAGAAAGTCAGGCATAAACATTACAAGACATGCGAGTCTGTATGAGACAGCACCAGCATATGTTACTGACCAACCTCGCTTCCTCAACTCAGCAGTAAGAGCTGTTACTAAACTCGGGCCACATGAATTATTGTCTGCACTCAAAAGAATTGAGAAGGACATGGGCCGTACTGACGGTATAAGGTATGGTCCAAGGCCAATGGACTTGGACATTTTATTCTATGGTAAATTTAAAGTCAGATCTGATATTCTGACAGTACCTCATGAAAGAATTTGGGAACGACCTTTTGTCATGGCCCCTTTGATGGATTTACTGGGAACAGCTATTGATAATGATACAGTTGCTAGCTGGCATTCATTTTCAGGCCATTCCGGTGGACTAAATGCATCATGGGAAAAATTAGGTGGAGAATCCCTTATTGGAGAGGAAGGTATGTATAGAGTAATGCCTGTTGCAAATGTCTTGCTTGATTGGTCGCGAAGAACATTGGTCATGGGGATTCTTAATTTGACTCCGGATAGTTTTAGTGATGGGGGAAATTTCCAGTCTGTGAAGTCTGCTGTTTCGCAGGCTCGGTTGATGATATCAGAGGGTGCTGATATAATTGATATCGGTGCTCAGTCTACTCGGCCGATGGCATCGAGAATCTCTGTCGAAGAAGAATTAGGTAGATTAATCCCTGTCCTGGAAGCTGTAATGTCAATACCTGAGGCAGAAGGAAAACTCATATCGGTGGATACTTTCTACTCTGAAGTTGCATCAGAAGCAGTGCGCAGAGGGGCTCATCTTATAAACGATGTATCTGCTGGGAAGTTAGATTCAAATATGTTTAAGGTCATGGCAGATCTTGATGCTCCTTATGTTGCAATGCACATGAGGGGTGATCCTTGTACAATGCAGAATGATGAAAACCTGAAATATGATAATGTTTGCAAGGATATATCCTCAGAATTATACGCGCAGGTTAGAGAGGCAGAAATGTCAGGAATCCCGGCATGGAGGATTATTATGGACCCTGGAATTGGATTCTCAAAGAAAACTGAAGACAATTTAGAGGTCCTCACAGGAATACCTGATATCAGACAAGAGATTTCAAAAAGAAGTTTGGCCATCTCTCATGCTCCTATACTAATTGGACCTTCAAGAAAGAGATTTTTAGGTGATATTTGTTCTCGCCCTTCTGCAGTTGAGAGGGATCCTGCTACCATTGCTGCTGTTACTGCGGGTGTGTTGGGTGGGGCTAATATCGTTCGAGTGCATAATGTCAAAGATAATCTAGATGCTATTAAGCTTTGCGATGCAATTCGGAGAAAAAAAGTTCTGTGA

Protein sequence

>MS.gene054700.t1

MSILKYLSARRSQLCAARNYLKVLGLSSLHTAPNSSVELHTRDEEVVIALGSNVGDRLQNFKEALKLMRKSGINITRHASLYETAPAYVTDQPRFLNSAVRAVTKLGPHELLSALKRIEKDMGRTDGIRYGPRPMDLDILFYGKFKVRSDILTVPHERIWERPFVMAPLMDLLGTAIDNDTVASWHSFSGHSGGLNASWEKLGGESLIGEEGMYRVMPVANVLLDWSRRTLVMGILNLTPDSFSDGGNFQSVKSAVSQARLMISEGADIIDIGAQSTRPMASRISVEEELGRLIPVLEAVMSIPEAEGKLISVDTFYSEVASEAVRRGAHLINDVSAGKLDSNMFKVMADLDAPYVAMHMRGDPCTMQNDENLKYDNVCKDISSELYAQVREAEMSGIPAWRIIMDPGIGFSKKTEDNLEVLTGIPDIRQEISKRSLAISHAPILIGPSRKRFLGDICSRPSAVERDPATIAAVTAGVLGGANIVRVHNVKDNLDAIKLCDAIRRKKVL