Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92930.t1 | XP_003614113.1 | 96.1 | 507 | 20 | 0 | 1 | 507 | 1 | 507 | 4.20E-277 | 963.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92930.t1 | O04862 | 91.1 | 507 | 45 | 0 | 1 | 507 | 1 | 507 | 9.9e-267 | 920.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92930.t1 | G7JY17 | 96.1 | 507 | 20 | 0 | 1 | 507 | 1 | 507 | 3.0e-277 | 963.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92930 | MS.gene95485 | PPI |
| MS.gene92930 | MS.gene67483 | PPI |
| MS.gene92930 | MS.gene64804 | PPI |
| MS.gene92930 | MS.gene93333 | PPI |
| MS.gene92930 | MS.gene040757 | PPI |
| MS.gene59503 | MS.gene92930 | PPI |
| MS.gene92930 | MS.gene073734 | PPI |
| MS.gene99262 | MS.gene92930 | PPI |
| MS.gene92930 | MS.gene054700 | PPI |
| MS.gene92930 | MS.gene99262 | PPI |
| MS.gene92930 | MS.gene035486 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92930.t1 | MTR_5g044980 | 95.866 | 508 | 21 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1002 |
| MS.gene92930.t1 | MTR_0076s0050 | 57.609 | 92 | 35 | 3 | 100 | 190 | 78 | 166 | 3.06e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92930.t1 | AT4G30000 | 69.851 | 471 | 142 | 0 | 37 | 507 | 80 | 550 | 0.0 | 717 |
| MS.gene92930.t1 | AT4G30000 | 69.807 | 467 | 141 | 0 | 37 | 503 | 80 | 546 | 0.0 | 708 |
| MS.gene92930.t1 | AT1G69190 | 69.002 | 471 | 142 | 4 | 41 | 507 | 9 | 479 | 0.0 | 682 |
Find 126 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGTTTACATTACCTTTA+AGG | 0.132682 | 5.1:+33528563 | None:intergenic |
| GTTAGATTCAAATATGTTTA+AGG | 0.171592 | 5.1:-33526750 | MS.gene92930:CDS |
| TGCAAACATTATCATATTTC+AGG | 0.184077 | 5.1:+33526651 | None:intergenic |
| CAGTACCTCATGAAAGAATT+TGG | 0.210934 | 5.1:-33527309 | MS.gene92930:CDS |
| GGCCCCTTTGATGGATTTAC+TGG | 0.232315 | 5.1:-33527269 | MS.gene92930:CDS |
| GCTGCAAGAAACTACCTTAA+AGG | 0.265009 | 5.1:-33528577 | MS.gene92930:intron |
| TCTCATGCTCCTATACTAAT+TGG | 0.273694 | 5.1:-33526449 | MS.gene92930:CDS |
| ACATACCTTCCTCTCCAATA+AGG | 0.288708 | 5.1:+33527149 | None:intergenic |
| TTAGGTGGAGAATCCCTTAT+TGG | 0.301459 | 5.1:-33527163 | MS.gene92930:CDS |
| GAAATCTCTTGTCTAATATC+AGG | 0.302936 | 5.1:+33526491 | None:intergenic |
| TTGCAAATGTCTTGCTTGAT+TGG | 0.312396 | 5.1:-33527111 | MS.gene92930:CDS |
| ATTATTATGGACCCTGGAAT+TGG | 0.347226 | 5.1:-33526560 | MS.gene92930:CDS |
| CCCGGCATGGAGGATTATTA+TGG | 0.354512 | 5.1:-33526573 | MS.gene92930:CDS |
| TGACTTTCTCATCAATTTCA+AGG | 0.357624 | 5.1:+33527576 | None:intergenic |
| CTTGAAGGTCCAATTAGTAT+AGG | 0.358491 | 5.1:+33526440 | None:intergenic |
| TGAAGTTCAACAGAGGAGTT+TGG | 0.374311 | 5.1:+33527670 | None:intergenic |
| TGAGGAAGTAGTGATTGCTT+TGG | 0.379928 | 5.1:-33527638 | MS.gene92930:CDS |
| GAGGAAGTAGTGATTGCTTT+GGG | 0.382617 | 5.1:-33527637 | MS.gene92930:CDS |
| TTCTTTGAGAATCCAATTCC+AGG | 0.387675 | 5.1:+33526548 | None:intergenic |
| CATACCTTCCTCTCCAATAA+GGG | 0.394402 | 5.1:+33527150 | None:intergenic |
| TGGGCCGTACTGACGGTATA+AGG | 0.399861 | 5.1:-33527402 | MS.gene92930:CDS |
| TGCTGTTACTGCCGGTGTGT+TGG | 0.407103 | 5.1:-33526351 | MS.gene92930:CDS |
| TTACTGCCGGTGTGTTGGGT+GGG | 0.409196 | 5.1:-33526346 | MS.gene92930:CDS |
| GCTGTTACTGCCGGTGTGTT+GGG | 0.411646 | 5.1:-33526350 | MS.gene92930:CDS |
| TTCAAATATGTTTAAGGTCA+TGG | 0.420172 | 5.1:-33526744 | MS.gene92930:CDS |
| GCTGACTCCTGCGCGCGCTC+AGG | 0.428229 | 5.1:+33528605 | None:intergenic |
| CTTATAAACGATGTATCTGC+TGG | 0.432582 | 5.1:-33526776 | MS.gene92930:CDS |
| GTATTGACATTACAGCTTCC+AGG | 0.432692 | 5.1:+33526879 | None:intergenic |
| GAAAACTGAAGACAATTTAG+AGG | 0.439828 | 5.1:-33526528 | MS.gene92930:CDS |
| TTGAAATTGATGAGAAAGTC+AGG | 0.441280 | 5.1:-33527574 | MS.gene92930:CDS |
| AGTACCTCATGAAAGAATTT+GGG | 0.441987 | 5.1:-33527308 | MS.gene92930:CDS |
| CATCAGAAGCAGTGCGCAGA+GGG | 0.452701 | 5.1:-33526805 | MS.gene92930:CDS |
| GACATTACAGCTTCCAGGAC+AGG | 0.454459 | 5.1:+33526884 | None:intergenic |
| TTAAGCTTTGCGATGCAATT+CGG | 0.456357 | 5.1:-33526277 | MS.gene92930:CDS |
| TGGTCCAAGGCCAATGGACT+TGG | 0.458334 | 5.1:-33527377 | MS.gene92930:CDS |
| GGCAGAAATGTCGGGAATCC+CGG | 0.460456 | 5.1:-33526591 | MS.gene92930:CDS |
| TTCCCAGTAAATCCATCAAA+GGG | 0.469536 | 5.1:+33527266 | None:intergenic |
| GGTGCTGATATAATTGATAT+CGG | 0.477866 | 5.1:-33526971 | MS.gene92930:CDS |
| CGATAGACTACAAAACTTCA+AGG | 0.479819 | 5.1:-33527602 | MS.gene92930:CDS |
| ATGTCCAAGTCCATTGGCCT+TGG | 0.480285 | 5.1:+33527373 | None:intergenic |
| TCATCATTCTGCATTGTACA+AGG | 0.485422 | 5.1:+33526677 | None:intergenic |
| ATCTCTGTCGAAGAAGAGTT+AGG | 0.485920 | 5.1:-33526917 | MS.gene92930:CDS |
| CCATGATGCATTTAGTCCAC+CGG | 0.486955 | 5.1:+33527192 | None:intergenic |
| TGTGAAGTCTGCTGTTTCGC+AGG | 0.487726 | 5.1:-33527014 | MS.gene92930:CDS |
| CTCATGTGCATTGCAACATA+AGG | 0.489603 | 5.1:+33526707 | None:intergenic |
| GTTACTGCCGGTGTGTTGGG+TGG | 0.490247 | 5.1:-33526347 | MS.gene92930:CDS |
| GTAACAGCAGCAATGGTAGC+AGG | 0.490567 | 5.1:+33526365 | None:intergenic |
| TCAAGCAAGACATTTGCAAC+AGG | 0.490734 | 5.1:+33527115 | None:intergenic |
| TACTGCCGGTGTGTTGGGTG+GGG | 0.490861 | 5.1:-33526345 | MS.gene92930:CDS |
| AGTCTGCTGTTTCGCAGGCT+CGG | 0.491298 | 5.1:-33527009 | MS.gene92930:CDS |
| AATAAAATGTCCAAGTCCAT+TGG | 0.499237 | 5.1:+33527367 | None:intergenic |
| ATCAAAGGGGCCATGACAAA+AGG | 0.499817 | 5.1:+33527280 | None:intergenic |
| GTTAGAGAGGCAGAAATGTC+GGG | 0.505013 | 5.1:-33526599 | MS.gene92930:CDS |
| GTAAGAGCTGTTACTAAACT+CGG | 0.507748 | 5.1:-33527469 | MS.gene92930:CDS |
| CTCGCCCTTCTGCAGTTGAG+AGG | 0.510611 | 5.1:-33526391 | MS.gene92930:CDS |
| GGATCCCTCTCAACTGCAGA+AGG | 0.513133 | 5.1:+33526386 | None:intergenic |
| CTGAGTTGAGGAAGCGAGGT+TGG | 0.516557 | 5.1:+33527494 | None:intergenic |
| ACCATTGCTGCTGTTACTGC+CGG | 0.517492 | 5.1:-33526359 | MS.gene92930:CDS |
| AGGTAGATTAATCCCTGTCC+TGG | 0.518253 | 5.1:-33526897 | MS.gene92930:CDS |
| ATATCGGTGCTCAGTCTACT+CGG | 0.518529 | 5.1:-33526955 | MS.gene92930:CDS |
| CTTATGTTGCAATGCACATG+AGG | 0.525825 | 5.1:-33526706 | MS.gene92930:CDS |
| TCCATAATAATCCTCCATGC+CGG | 0.526016 | 5.1:+33526572 | None:intergenic |
| CGGTGGACTAAATGCATCAT+GGG | 0.526133 | 5.1:-33527191 | MS.gene92930:CDS |
| CCATAATAATCCTCCATGCC+GGG | 0.527864 | 5.1:+33526573 | None:intergenic |
| CCGGTGGACTAAATGCATCA+TGG | 0.533304 | 5.1:-33527192 | MS.gene92930:CDS |
| GTCGCGAAGAACATTGGTCA+TGG | 0.534897 | 5.1:-33527089 | MS.gene92930:CDS |
| TGCTCAGTCTACTCGGCCGA+TGG | 0.535499 | 5.1:-33526948 | MS.gene92930:CDS |
| TCGCCCTTCTGCAGTTGAGA+GGG | 0.537131 | 5.1:-33526390 | MS.gene92930:CDS |
| GGGGATTCTTAATTTGACTC+CGG | 0.539045 | 5.1:-33527068 | MS.gene92930:CDS |
| GGCAGAAGGAAAACTCATAT+CGG | 0.539405 | 5.1:-33526852 | MS.gene92930:CDS |
| GGTTAGAGAGGCAGAAATGT+CGG | 0.541271 | 5.1:-33526600 | MS.gene92930:CDS |
| ATAATGATACAGTTGCTAGC+TGG | 0.548830 | 5.1:-33527234 | MS.gene92930:CDS |
| GAATCCCTTATTGGAGAGGA+AGG | 0.553444 | 5.1:-33527154 | MS.gene92930:CDS |
| CGTACTGACGGTATAAGGTA+TGG | 0.555471 | 5.1:-33527397 | MS.gene92930:CDS |
| TGATTGGTCGCGAAGAACAT+TGG | 0.556713 | 5.1:-33527095 | MS.gene92930:CDS |
| TCGCGAAGAACATTGGTCAT+GGG | 0.557979 | 5.1:-33527088 | MS.gene92930:CDS |
| GAAATATGATAATGTTTGCA+AGG | 0.562167 | 5.1:-33526648 | MS.gene92930:CDS |
| TCTTTGAGAATCCAATTCCA+GGG | 0.565717 | 5.1:+33526549 | None:intergenic |
| ATCCTCAGAATTATACGCGC+AGG | 0.569632 | 5.1:-33526621 | MS.gene92930:CDS |
| GTTCCCAGTAAATCCATCAA+AGG | 0.571018 | 5.1:+33527265 | None:intergenic |
| GACAATTTAGAGGTCCTCAC+AGG | 0.571113 | 5.1:-33526518 | MS.gene92930:CDS |
| GCCCCTTTGATGGATTTACT+GGG | 0.573888 | 5.1:-33527268 | MS.gene92930:CDS |
| ATTATACGCGCAGGTTAGAG+AGG | 0.575162 | 5.1:-33526612 | MS.gene92930:CDS |
| CGTTCCCAAATTCTTTCATG+AGG | 0.575848 | 5.1:+33527304 | None:intergenic |
| ATTGCTTTGGGAAGTAATGT+TGG | 0.578130 | 5.1:-33527625 | MS.gene92930:CDS |
| CAAAAGAATTGAGAAGGACA+TGG | 0.578669 | 5.1:-33527422 | MS.gene92930:CDS |
| AAGGTATGGTCCAAGGCCAA+TGG | 0.579739 | 5.1:-33527383 | MS.gene92930:CDS |
| CGCGAAGAACATTGGTCATG+GGG | 0.583740 | 5.1:-33527087 | MS.gene92930:CDS |
| TGGAGGATTATTATGGACCC+TGG | 0.584512 | 5.1:-33526566 | MS.gene92930:CDS |
| CATACCTTATACCGTCAGTA+CGG | 0.586658 | 5.1:+33527398 | None:intergenic |
| ACATTACAGCTTCCAGGACA+GGG | 0.587554 | 5.1:+33526885 | None:intergenic |
| AAGGACATGGGCCGTACTGA+CGG | 0.590366 | 5.1:-33527409 | MS.gene92930:CDS |
| TGCACTCAAAAGAATTGAGA+AGG | 0.591758 | 5.1:-33527428 | MS.gene92930:CDS |
| ACCGGCAGTAACAGCAGCAA+TGG | 0.592145 | 5.1:+33526358 | None:intergenic |
| AAACAGCAGACTTCACAGAC+TGG | 0.598220 | 5.1:+33527020 | None:intergenic |
| GCATCAGAAGCAGTGCGCAG+AGG | 0.600270 | 5.1:-33526806 | MS.gene92930:CDS |
| ATGCATTTAGTCCACCGGAA+TGG | 0.606923 | 5.1:+33527197 | None:intergenic |
| ATGTCAATACCTGAGGCAGA+AGG | 0.607903 | 5.1:-33526866 | MS.gene92930:CDS |
| TTAAGTACCTGAGCGCGCGC+AGG | 0.609739 | 5.1:-33528612 | MS.gene92930:CDS |
| CAGCTCTTACTGCTGAGTTG+AGG | 0.610637 | 5.1:+33527482 | None:intergenic |
| TTATAAACGATGTATCTGCT+GGG | 0.612784 | 5.1:-33526775 | MS.gene92930:CDS |
| ACGGTATAAGGTATGGTCCA+AGG | 0.616302 | 5.1:-33527390 | MS.gene92930:CDS |
| ACAGAGATTCTCGATGCCAT+CGG | 0.617433 | 5.1:+33526932 | None:intergenic |
| TAAGAGCTGTTACTAAACTC+GGG | 0.618873 | 5.1:-33527468 | MS.gene92930:CDS |
| TAGTATAGGAGCATGAGAGA+TGG | 0.625351 | 5.1:+33526454 | None:intergenic |
| AACCTGCGCGTATAATTCTG+AGG | 0.633515 | 5.1:+33526619 | None:intergenic |
| TGGAGAATCCCTTATTGGAG+AGG | 0.635835 | 5.1:-33527158 | MS.gene92930:CDS |
| ATTAGCCCCACCCAACACAC+CGG | 0.636124 | 5.1:+33526340 | None:intergenic |
| AAATGTCGGGAATCCCGGCA+TGG | 0.636653 | 5.1:-33526586 | MS.gene92930:CDS |
| AGTGCAGACAATAATTCATG+TGG | 0.636663 | 5.1:+33527445 | None:intergenic |
| TTATGTTGCAATGCACATGA+GGG | 0.639561 | 5.1:-33526705 | MS.gene92930:CDS |
| AAAAGAATTGAGAAGGACAT+GGG | 0.639820 | 5.1:-33527421 | MS.gene92930:CDS |
| GATCCCTCTCAACTGCAGAA+GGG | 0.640024 | 5.1:+33526387 | None:intergenic |
| ACTGCTGAGTTGAGGAAGCG+AGG | 0.643340 | 5.1:+33527490 | None:intergenic |
| GGCTCGGTTGATGATATCAG+AGG | 0.645667 | 5.1:-33526993 | MS.gene92930:CDS |
| TGAACTTCACACTCGAGATG+AGG | 0.650070 | 5.1:-33527656 | MS.gene92930:CDS |
| GGTTGGTCAGTAACATACAC+TGG | 0.658707 | 5.1:+33527511 | None:intergenic |
| AGCTGTAATGTCAATACCTG+AGG | 0.663866 | 5.1:-33526873 | MS.gene92930:CDS |
| TGTCGGGAATCCCGGCATGG+AGG | 0.676925 | 5.1:-33526583 | MS.gene92930:CDS |
| AGAAGGAAAACTCATATCGG+TGG | 0.679059 | 5.1:-33526849 | MS.gene92930:CDS |
| GCTCGGTTGATGATATCAGA+GGG | 0.685069 | 5.1:-33526992 | MS.gene92930:CDS |
| TAATATCAGGTATTCCTGTG+AGG | 0.707150 | 5.1:+33526504 | None:intergenic |
| TCGAGTGTGAAGTTCAACAG+AGG | 0.712636 | 5.1:+33527663 | None:intergenic |
| ATCAGAAGCAGTGCGCAGAG+GGG | 0.714462 | 5.1:-33526804 | MS.gene92930:CDS |
| TATGTTGCAATGCACATGAG+GGG | 0.732291 | 5.1:-33526704 | MS.gene92930:CDS |
| TCCCAGTAAATCCATCAAAG+GGG | 0.734725 | 5.1:+33527267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATATTATTTAAGAG+AGG | - | chr5.1:33526750-33526769 | MS.gene92930:CDS | 10.0% |
| !! | AAATAATATTATTTAAGAGA+GGG | - | chr5.1:33526751-33526770 | MS.gene92930:CDS | 10.0% |
| !! | AAATAATGTTTGTAAATAAT+AGG | + | chr5.1:33527140-33527159 | None:intergenic | 10.0% |
| !! | TTGAATTATTATAACTAAAG+AGG | - | chr5.1:33526722-33526741 | MS.gene92930:CDS | 15.0% |
| !!! | ATTTTTTTCTCTTTGTTTAA+AGG | - | chr5.1:33526866-33526885 | MS.gene92930:CDS | 15.0% |
| !!! | TTATTAACTACACATTTTTA+GGG | - | chr5.1:33526810-33526829 | MS.gene92930:CDS | 15.0% |
| !!! | TTTATTAACTACACATTTTT+AGG | - | chr5.1:33526809-33526828 | MS.gene92930:CDS | 15.0% |
| !! | AAAAAAATATTCACTAACCA+AGG | + | chr5.1:33526854-33526873 | None:intergenic | 20.0% |
| !! | AAATTTCTATCATCTAATAG+AGG | - | chr5.1:33526378-33526397 | MS.gene92930:CDS | 20.0% |
| !! | ATTAGATGATAGAAATTTCA+GGG | + | chr5.1:33526376-33526395 | None:intergenic | 20.0% |
| !! | GTTAGATTCAAATATGTTTA+AGG | - | chr5.1:33528131-33528150 | MS.gene92930:intron | 20.0% |
| !! | TATTAGATGATAGAAATTTC+AGG | + | chr5.1:33526377-33526396 | None:intergenic | 20.0% |
| !! | TGGAAATAGTAAAATTTGAT+TGG | + | chr5.1:33526450-33526469 | None:intergenic | 20.0% |
| !!! | TATCCTTTTATTATGAAACT+TGG | + | chr5.1:33527059-33527078 | None:intergenic | 20.0% |
| ! | AGAGATTTCAAAAAGAAGTT+TGG | - | chr5.1:33528404-33528423 | MS.gene92930:intron | 25.0% |
| ! | ATCAGTTTACATTACCTTTA+AGG | + | chr5.1:33526321-33526340 | None:intergenic | 25.0% |
| ! | CATGTGTAAAAAAGTTTAAG+AGG | - | chr5.1:33526528-33526547 | MS.gene92930:CDS | 25.0% |
| ! | GATTAATTTCTATACACTGA+CGG | - | chr5.1:33526405-33526424 | MS.gene92930:CDS | 25.0% |
| ! | TGCAAACATTATCATATTTC+AGG | + | chr5.1:33528233-33528252 | None:intergenic | 25.0% |
| ! | TTGCCAAGTTTCATAATAAA+AGG | - | chr5.1:33527053-33527072 | MS.gene92930:CDS | 25.0% |
| !! | ATGTAAACTGATTCTACTTA+AGG | - | chr5.1:33526329-33526348 | MS.gene92930:CDS | 25.0% |
| !! | GAAATATGATAATGTTTGCA+AGG | - | chr5.1:33528233-33528252 | MS.gene92930:intron | 25.0% |
| !! | GTAAATAATAGGCTTTGATT+GGG | + | chr5.1:33527129-33527148 | None:intergenic | 25.0% |
| !! | TGTAAATAATAGGCTTTGAT+TGG | + | chr5.1:33527130-33527149 | None:intergenic | 25.0% |
| !! | TTCAAATATGTTTAAGGTCA+TGG | - | chr5.1:33528137-33528156 | MS.gene92930:intron | 25.0% |
| !!! | CATAACTATAGAAGTATTGT+AGG | + | chr5.1:33526969-33526988 | None:intergenic | 25.0% |
| !!! | CATTGTAAAGTTTGATTTGA+AGG | - | chr5.1:33526662-33526681 | MS.gene92930:CDS | 25.0% |
| AAAAGAATTGAGAAGGACAT+GGG | - | chr5.1:33527460-33527479 | MS.gene92930:CDS | 30.0% | |
| AATAAAATGTCCAAGTCCAT+TGG | + | chr5.1:33527517-33527536 | None:intergenic | 30.0% | |
| AATGCATCATGGGAAAAATT+AGG | - | chr5.1:33527700-33527719 | MS.gene92930:CDS | 30.0% | |
| AGTACCTCATGAAAGAATTT+GGG | - | chr5.1:33527573-33527592 | MS.gene92930:CDS | 30.0% | |
| ATTGGTAGATGACAATGTTT+GGG | + | chr5.1:33526900-33526919 | None:intergenic | 30.0% | |
| CCTAAAAATCTCTTTCTTGA+AGG | + | chr5.1:33528459-33528478 | None:intergenic | 30.0% | |
| GAAAACTGAAGACAATTTAG+AGG | - | chr5.1:33528353-33528372 | MS.gene92930:intron | 30.0% | |
| GAAATCTCTTGTCTAATATC+AGG | + | chr5.1:33528393-33528412 | None:intergenic | 30.0% | |
| GCATCATGAGATAATTTGAT+TGG | - | chr5.1:33526502-33526521 | MS.gene92930:CDS | 30.0% | |
| TATTGGTAGATGACAATGTT+TGG | + | chr5.1:33526901-33526920 | None:intergenic | 30.0% | |
| TGACTTTCTCATCAATTTCA+AGG | + | chr5.1:33527308-33527327 | None:intergenic | 30.0% | |
| TTATAAACGATGTATCTGCT+GGG | - | chr5.1:33528106-33528125 | MS.gene92930:intron | 30.0% | |
| TTGAAATTGATGAGAAAGTC+AGG | - | chr5.1:33527307-33527326 | MS.gene92930:CDS | 30.0% | |
| TTGATTCCTAAAAACAACTC+TGG | + | chr5.1:33526470-33526489 | None:intergenic | 30.0% | |
| ! | CCTTCAAGAAAGAGATTTTT+AGG | - | chr5.1:33528456-33528475 | MS.gene92930:intron | 30.0% |
| ! | GACTTGGACATTTTATTCTA+TGG | - | chr5.1:33527520-33527539 | MS.gene92930:CDS | 30.0% |
| ! | TTATCAGAGTTCATCAGTTT+TGG | - | chr5.1:33527099-33527118 | MS.gene92930:CDS | 30.0% |
| !! | GGTGCTGATATAATTGATAT+CGG | - | chr5.1:33527910-33527929 | MS.gene92930:intron | 30.0% |
| !! | TTATTTTTCCTTGCAGTACT+CGG | - | chr5.1:33527166-33527185 | MS.gene92930:CDS | 30.0% |
| !!! | CTATTTCCAGAGTTGTTTTT+AGG | - | chr5.1:33526461-33526480 | MS.gene92930:CDS | 30.0% |
| AGAGGTAAGACATTGTAAAG+AGG | - | chr5.1:33526546-33526565 | MS.gene92930:CDS | 35.0% | |
| AGTGCAGACAATAATTCATG+TGG | + | chr5.1:33527439-33527458 | None:intergenic | 35.0% | |
| ATAATGATACAGTTGCTAGC+TGG | - | chr5.1:33527647-33527666 | MS.gene92930:CDS | 35.0% | |
| ATTATTATGGACCCTGGAAT+TGG | - | chr5.1:33528321-33528340 | MS.gene92930:intron | 35.0% | |
| CAAAAGAATTGAGAAGGACA+TGG | - | chr5.1:33527459-33527478 | MS.gene92930:CDS | 35.0% | |
| CAGTACCTCATGAAAGAATT+TGG | - | chr5.1:33527572-33527591 | MS.gene92930:CDS | 35.0% | |
| CGATAGACTACAAAACTTCA+AGG | - | chr5.1:33527279-33527298 | MS.gene92930:CDS | 35.0% | |
| CTTATAAACGATGTATCTGC+TGG | - | chr5.1:33528105-33528124 | MS.gene92930:intron | 35.0% | |
| CTTGAAGGTCCAATTAGTAT+AGG | + | chr5.1:33528444-33528463 | None:intergenic | 35.0% | |
| GTAAAGAGGTAAGACTTGAA+GGG | - | chr5.1:33526560-33526579 | MS.gene92930:CDS | 35.0% | |
| GTAAGAGCTGTTACTAAACT+CGG | - | chr5.1:33527412-33527431 | MS.gene92930:CDS | 35.0% | |
| TAAAGAGGTAAGACTTGAAG+GGG | - | chr5.1:33526561-33526580 | MS.gene92930:CDS | 35.0% | |
| TAAGAGCTGTTACTAAACTC+GGG | - | chr5.1:33527413-33527432 | MS.gene92930:CDS | 35.0% | |
| TAATATCAGGTATTCCTGTG+AGG | + | chr5.1:33528380-33528399 | None:intergenic | 35.0% | |
| TAGGAATCAACCTTAGAAAG+TGG | - | chr5.1:33526480-33526499 | MS.gene92930:CDS | 35.0% | |
| TCATCATTCTGCATTGTACA+AGG | + | chr5.1:33528207-33528226 | None:intergenic | 35.0% | |
| TCTCATGCTCCTATACTAAT+TGG | - | chr5.1:33528432-33528451 | MS.gene92930:intron | 35.0% | |
| TGCACTCAAAAGAATTGAGA+AGG | - | chr5.1:33527453-33527472 | MS.gene92930:CDS | 35.0% | |
| TGTAAAGAGGTAAGACTTGA+AGG | - | chr5.1:33526559-33526578 | MS.gene92930:CDS | 35.0% | |
| TTAAGCTTTGCGATGCAATT+CGG | - | chr5.1:33528604-33528623 | MS.gene92930:CDS | 35.0% | |
| TTATGTTGCAATGCACATGA+GGG | - | chr5.1:33528176-33528195 | MS.gene92930:intron | 35.0% | |
| TTCCCAGTAAATCCATCAAA+GGG | + | chr5.1:33527618-33527637 | None:intergenic | 35.0% | |
| TTGCAAATGTCTTGCTTGAT+TGG | - | chr5.1:33527770-33527789 | MS.gene92930:intron | 35.0% | |
| TTGTCATCTACCAATACTCA+CGG | - | chr5.1:33526905-33526924 | MS.gene92930:CDS | 35.0% | |
| ! | TCTTTGAGAATCCAATTCCA+GGG | + | chr5.1:33528335-33528354 | None:intergenic | 35.0% |
| ! | TTCTTTGAGAATCCAATTCC+AGG | + | chr5.1:33528336-33528355 | None:intergenic | 35.0% |
| !! | ATTGCTTTGGGAAGTAATGT+TGG | - | chr5.1:33527256-33527275 | MS.gene92930:CDS | 35.0% |
| ACATACCTTCCTCTCCAATA+AGG | + | chr5.1:33527735-33527754 | None:intergenic | 40.0% | |
| ACCAGTTTATGTAACGTCTG+TGG | + | chr5.1:33527025-33527044 | None:intergenic | 40.0% | |
| AGAAGGAAAACTCATATCGG+TGG | - | chr5.1:33528032-33528051 | MS.gene92930:intron | 40.0% | |
| AGAGATTGACAGTTTCGGAA+TGG | + | chr5.1:33526609-33526628 | None:intergenic | 40.0% | |
| AGCTGTAATGTCAATACCTG+AGG | - | chr5.1:33528008-33528027 | MS.gene92930:intron | 40.0% | |
| ATCTCTGTCGAAGAAGAGTT+AGG | - | chr5.1:33527964-33527983 | MS.gene92930:intron | 40.0% | |
| CATACCTTATACCGTCAGTA+CGG | + | chr5.1:33527486-33527505 | None:intergenic | 40.0% | |
| CATACCTTCCTCTCCAATAA+GGG | + | chr5.1:33527734-33527753 | None:intergenic | 40.0% | |
| CCCTAAATCTCATTCTTGCA+CGG | + | chr5.1:33526634-33526653 | None:intergenic | 40.0% | |
| CCGTGCAAGAATGAGATTTA+GGG | - | chr5.1:33526631-33526650 | MS.gene92930:CDS | 40.0% | |
| CGTTCCCAAATTCTTTCATG+AGG | + | chr5.1:33527580-33527599 | None:intergenic | 40.0% | |
| CTCATGTGCATTGCAACATA+AGG | + | chr5.1:33528177-33528196 | None:intergenic | 40.0% | |
| CTTATGTTGCAATGCACATG+AGG | - | chr5.1:33528175-33528194 | MS.gene92930:intron | 40.0% | |
| GAGGAAGTAGTGATTGCTTT+GGG | - | chr5.1:33527244-33527263 | MS.gene92930:CDS | 40.0% | |
| GCATCATGGGAAAAATTAGG+TGG | - | chr5.1:33527703-33527722 | MS.gene92930:intron | 40.0% | |
| GCTGCAAGAAACTACCTTAA+AGG | - | chr5.1:33526304-33526323 | MS.gene92930:CDS | 40.0% | |
| GGCAGAAGGAAAACTCATAT+CGG | - | chr5.1:33528029-33528048 | MS.gene92930:intron | 40.0% | |
| GTTCCCAGTAAATCCATCAA+AGG | + | chr5.1:33527619-33527638 | None:intergenic | 40.0% | |
| TATGTTGCAATGCACATGAG+GGG | - | chr5.1:33528177-33528196 | MS.gene92930:intron | 40.0% | |
| TCAAGCAAGACATTTGCAAC+AGG | + | chr5.1:33527769-33527788 | None:intergenic | 40.0% | |
| TCCACAGACGTTACATAAAC+TGG | - | chr5.1:33527021-33527040 | MS.gene92930:CDS | 40.0% | |
| TCCATAATAATCCTCCATGC+CGG | + | chr5.1:33528312-33528331 | None:intergenic | 40.0% | |
| TCCCAGTAAATCCATCAAAG+GGG | + | chr5.1:33527617-33527636 | None:intergenic | 40.0% | |
| TCCGTGCAAGAATGAGATTT+AGG | - | chr5.1:33526630-33526649 | MS.gene92930:CDS | 40.0% | |
| TGAAGTTCAACAGAGGAGTT+TGG | + | chr5.1:33527214-33527233 | None:intergenic | 40.0% | |
| TGAGGAAGTAGTGATTGCTT+TGG | - | chr5.1:33527243-33527262 | MS.gene92930:CDS | 40.0% | |
| TGTCATCTACCAATACTCAC+GGG | - | chr5.1:33526906-33526925 | MS.gene92930:CDS | 40.0% | |
| TTAGGTGGAGAATCCCTTAT+TGG | - | chr5.1:33527718-33527737 | MS.gene92930:intron | 40.0% | |
| ! | GAGAGAGTGGTTTCTTTTCT+TGG | - | chr5.1:33526939-33526958 | MS.gene92930:CDS | 40.0% |
| ! | GGGGATTCTTAATTTGACTC+CGG | - | chr5.1:33527813-33527832 | MS.gene92930:intron | 40.0% |
| ! | GTATTGACATTACAGCTTCC+AGG | + | chr5.1:33528005-33528024 | None:intergenic | 40.0% |
| ! | TAGTATAGGAGCATGAGAGA+TGG | + | chr5.1:33528430-33528449 | None:intergenic | 40.0% |
| !! | CATTCATTTTCAGGCCATTC+CGG | - | chr5.1:33527670-33527689 | MS.gene92930:CDS | 40.0% |
| !! | TCTCATGATGCCACTTTCTA+AGG | + | chr5.1:33526493-33526512 | None:intergenic | 40.0% |
| !!! | ACTCCGGATAGTTTTAGTGA+TGG | - | chr5.1:33527829-33527848 | MS.gene92930:intron | 40.0% |
| !!! | ATTGTTTTTAGAGCTGGCCT+TGG | - | chr5.1:33526834-33526853 | MS.gene92930:CDS | 40.0% |
| !!! | CTCCGGATAGTTTTAGTGAT+GGG | - | chr5.1:33527830-33527849 | MS.gene92930:intron | 40.0% |
| !!! | TAGGGCATTGTTTTTAGAGC+TGG | - | chr5.1:33526828-33526847 | MS.gene92930:CDS | 40.0% |
| !!! | TCCGGATAGTTTTAGTGATG+GGG | - | chr5.1:33527831-33527850 | MS.gene92930:intron | 40.0% |
| AAACAGCAGACTTCACAGAC+TGG | + | chr5.1:33527864-33527883 | None:intergenic | 45.0% | |
| AACCTGCGCGTATAATTCTG+AGG | + | chr5.1:33528265-33528284 | None:intergenic | 45.0% | |
| AATACTCACGGGTGGAGATA+TGG | - | chr5.1:33526917-33526936 | MS.gene92930:CDS | 45.0% | |
| ACAGAGATTCTCGATGCCAT+CGG | + | chr5.1:33527952-33527971 | None:intergenic | 45.0% | |
| ACATTACAGCTTCCAGGACA+GGG | + | chr5.1:33527999-33528018 | None:intergenic | 45.0% | |
| ACGGTATAAGGTATGGTCCA+AGG | - | chr5.1:33527491-33527510 | MS.gene92930:CDS | 45.0% | |
| AGGTAGATTAATCCCTGTCC+TGG | - | chr5.1:33527984-33528003 | MS.gene92930:intron | 45.0% | |
| ATATCTCCACCCGTGAGTAT+TGG | + | chr5.1:33526918-33526937 | None:intergenic | 45.0% | |
| ATCAAAGGGGCCATGACAAA+AGG | + | chr5.1:33527604-33527623 | None:intergenic | 45.0% | |
| ATCCTCAGAATTATACGCGC+AGG | - | chr5.1:33528260-33528279 | MS.gene92930:intron | 45.0% | |
| ATGCATTTAGTCCACCGGAA+TGG | + | chr5.1:33527687-33527706 | None:intergenic | 45.0% | |
| ATGTCAATACCTGAGGCAGA+AGG | - | chr5.1:33528015-33528034 | MS.gene92930:intron | 45.0% | |
| ATTATACGCGCAGGTTAGAG+AGG | - | chr5.1:33528269-33528288 | MS.gene92930:intron | 45.0% | |
| CCATAATAATCCTCCATGCC+GGG | + | chr5.1:33528311-33528330 | None:intergenic | 45.0% | |
| CCATGATGCATTTAGTCCAC+CGG | + | chr5.1:33527692-33527711 | None:intergenic | 45.0% | |
| CCCCCATCACTAAAACTATC+CGG | + | chr5.1:33527835-33527854 | None:intergenic | 45.0% | |
| CGGAGAGAGATTGACAGTTT+CGG | + | chr5.1:33526614-33526633 | None:intergenic | 45.0% | |
| GAATCCCTTATTGGAGAGGA+AGG | - | chr5.1:33527727-33527746 | MS.gene92930:intron | 45.0% | |
| GACAATTTAGAGGTCCTCAC+AGG | - | chr5.1:33528363-33528382 | MS.gene92930:intron | 45.0% | |
| GGTTAGAGAGGCAGAAATGT+CGG | - | chr5.1:33528281-33528300 | MS.gene92930:intron | 45.0% | |
| GTTAGAGAGGCAGAAATGTC+GGG | - | chr5.1:33528282-33528301 | MS.gene92930:intron | 45.0% | |
| TCGAGTGTGAAGTTCAACAG+AGG | + | chr5.1:33527221-33527240 | None:intergenic | 45.0% | |
| TCGCGAAGAACATTGGTCAT+GGG | - | chr5.1:33527793-33527812 | MS.gene92930:intron | 45.0% | |
| TGAACTTCACACTCGAGATG+AGG | - | chr5.1:33527225-33527244 | MS.gene92930:CDS | 45.0% | |
| TGGAGAATCCCTTATTGGAG+AGG | - | chr5.1:33527723-33527742 | MS.gene92930:intron | 45.0% | |
| TGGAGGATTATTATGGACCC+TGG | - | chr5.1:33528315-33528334 | MS.gene92930:intron | 45.0% | |
| ! | ATATCGGTGCTCAGTCTACT+CGG | - | chr5.1:33527926-33527945 | MS.gene92930:intron | 45.0% |
| ! | ATGACAATCCGAGTACTGCA+AGG | + | chr5.1:33527177-33527196 | None:intergenic | 45.0% |
| ! | ATGAGTTTTCCTTCTGCCTC+AGG | + | chr5.1:33528027-33528046 | None:intergenic | 45.0% |
| ! | CGTACTGACGGTATAAGGTA+TGG | - | chr5.1:33527484-33527503 | MS.gene92930:CDS | 45.0% |
| ! | GCTAGCTGGCATTCATTTTC+AGG | - | chr5.1:33527661-33527680 | MS.gene92930:CDS | 45.0% |
| ! | GGTTGGTCAGTAACATACAC+TGG | + | chr5.1:33527373-33527392 | None:intergenic | 45.0% |
| ! | TGATTGGTCGCGAAGAACAT+TGG | - | chr5.1:33527786-33527805 | MS.gene92930:intron | 45.0% |
| ! | TTGGGAACGACCTTTTGTCA+TGG | - | chr5.1:33527591-33527610 | MS.gene92930:CDS | 45.0% |
| ! | TTTTGTCATGGCCCCTTTGA+TGG | - | chr5.1:33527603-33527622 | MS.gene92930:CDS | 45.0% |
| !! | CGGTGGACTAAATGCATCAT+GGG | - | chr5.1:33527690-33527709 | MS.gene92930:CDS | 45.0% |
| !! | GCCCCTTTGATGGATTTACT+GGG | - | chr5.1:33527613-33527632 | MS.gene92930:CDS | 45.0% |
| !! | GCTCGGTTGATGATATCAGA+GGG | - | chr5.1:33527889-33527908 | MS.gene92930:intron | 45.0% |
| !!! | CCGGATAGTTTTAGTGATGG+GGG | - | chr5.1:33527832-33527851 | MS.gene92930:intron | 45.0% |
| AAGGTATGGTCCAAGGCCAA+TGG | - | chr5.1:33527498-33527517 | MS.gene92930:CDS | 50.0% | |
| ACCATTGCTGCTGTTACTGC+CGG | - | chr5.1:33528522-33528541 | MS.gene92930:intron | 50.0% | |
| CAGCTCTTACTGCTGAGTTG+AGG | + | chr5.1:33527402-33527421 | None:intergenic | 50.0% | |
| CATCTACCAATACTCACGGG+TGG | - | chr5.1:33526909-33526928 | MS.gene92930:CDS | 50.0% | |
| CCCGGCATGGAGGATTATTA+TGG | - | chr5.1:33528308-33528327 | MS.gene92930:intron | 50.0% | |
| CGCGAAGAACATTGGTCATG+GGG | - | chr5.1:33527794-33527813 | MS.gene92930:intron | 50.0% | |
| GACATTACAGCTTCCAGGAC+AGG | + | chr5.1:33528000-33528019 | None:intergenic | 50.0% | |
| GATCCCTCTCAACTGCAGAA+GGG | + | chr5.1:33528497-33528516 | None:intergenic | 50.0% | |
| GTAACAGCAGCAATGGTAGC+AGG | + | chr5.1:33528519-33528538 | None:intergenic | 50.0% | |
| GTCGCGAAGAACATTGGTCA+TGG | - | chr5.1:33527792-33527811 | MS.gene92930:intron | 50.0% | |
| ! | ATGTCCAAGTCCATTGGCCT+TGG | + | chr5.1:33527511-33527530 | None:intergenic | 50.0% |
| !! | CCGGTGGACTAAATGCATCA+TGG | - | chr5.1:33527689-33527708 | MS.gene92930:CDS | 50.0% |
| !! | GGCCCCTTTGATGGATTTAC+TGG | - | chr5.1:33527612-33527631 | MS.gene92930:CDS | 50.0% |
| !! | GGCTCGGTTGATGATATCAG+AGG | - | chr5.1:33527888-33527907 | MS.gene92930:intron | 50.0% |
| !! | TCATTTTCAGGCCATTCCGG+TGG | - | chr5.1:33527673-33527692 | MS.gene92930:CDS | 50.0% |
| !! | TGTGAAGTCTGCTGTTTCGC+AGG | - | chr5.1:33527867-33527886 | MS.gene92930:intron | 50.0% |
| AAATGTCGGGAATCCCGGCA+TGG | - | chr5.1:33528295-33528314 | MS.gene92930:intron | 55.0% | |
| AAGGACATGGGCCGTACTGA+CGG | - | chr5.1:33527472-33527491 | MS.gene92930:CDS | 55.0% | |
| ACCGGCAGTAACAGCAGCAA+TGG | + | chr5.1:33528526-33528545 | None:intergenic | 55.0% | |
| ATCAGAAGCAGTGCGCAGAG+GGG | - | chr5.1:33528077-33528096 | MS.gene92930:intron | 55.0% | |
| ATTAGCCCCACCCAACACAC+CGG | + | chr5.1:33528544-33528563 | None:intergenic | 55.0% | |
| CATCAGAAGCAGTGCGCAGA+GGG | - | chr5.1:33528076-33528095 | MS.gene92930:intron | 55.0% | |
| GCTGTTACTGCCGGTGTGTT+GGG | - | chr5.1:33528531-33528550 | MS.gene92930:intron | 55.0% | |
| GGATCCCTCTCAACTGCAGA+AGG | + | chr5.1:33528498-33528517 | None:intergenic | 55.0% | |
| GGCAGAAATGTCGGGAATCC+CGG | - | chr5.1:33528290-33528309 | MS.gene92930:intron | 55.0% | |
| GGGTGGAGATATGGAGAGAG+TGG | - | chr5.1:33526926-33526945 | MS.gene92930:CDS | 55.0% | |
| TCGCCCTTCTGCAGTTGAGA+GGG | - | chr5.1:33528491-33528510 | MS.gene92930:intron | 55.0% | |
| TGCTGTTACTGCCGGTGTGT+TGG | - | chr5.1:33528530-33528549 | MS.gene92930:intron | 55.0% | |
| TTACTGCCGGTGTGTTGGGT+GGG | - | chr5.1:33528535-33528554 | MS.gene92930:intron | 55.0% | |
| ! | ACTGCTGAGTTGAGGAAGCG+AGG | + | chr5.1:33527394-33527413 | None:intergenic | 55.0% |
| ! | CTGAGTTGAGGAAGCGAGGT+TGG | + | chr5.1:33527390-33527409 | None:intergenic | 55.0% |
| ! | TGGGCCGTACTGACGGTATA+AGG | - | chr5.1:33527479-33527498 | MS.gene92930:CDS | 55.0% |
| ! | TGGTCCAAGGCCAATGGACT+TGG | - | chr5.1:33527504-33527523 | MS.gene92930:CDS | 55.0% |
| !! | AGTCTGCTGTTTCGCAGGCT+CGG | - | chr5.1:33527872-33527891 | MS.gene92930:intron | 55.0% |
| CTCGCCCTTCTGCAGTTGAG+AGG | - | chr5.1:33528490-33528509 | MS.gene92930:intron | 60.0% | |
| GCATCAGAAGCAGTGCGCAG+AGG | - | chr5.1:33528075-33528094 | MS.gene92930:intron | 60.0% | |
| GTTACTGCCGGTGTGTTGGG+TGG | - | chr5.1:33528534-33528553 | MS.gene92930:intron | 60.0% | |
| TACTGCCGGTGTGTTGGGTG+GGG | - | chr5.1:33528536-33528555 | MS.gene92930:intron | 60.0% | |
| TGCTCAGTCTACTCGGCCGA+TGG | - | chr5.1:33527933-33527952 | MS.gene92930:intron | 60.0% | |
| TTAAGTACCTGAGCGCGCGC+AGG | - | chr5.1:33526269-33526288 | MS.gene92930:CDS | 60.0% | |
| TGTCGGGAATCCCGGCATGG+AGG | - | chr5.1:33528298-33528317 | MS.gene92930:intron | 65.0% | |
| ! | GCTGACTCCTGCGCGCGCTC+AGG | + | chr5.1:33526279-33526298 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 33526259 | 33528644 | 33526259 | ID=MS.gene92930 |
| chr5.1 | mRNA | 33526259 | 33528644 | 33526259 | ID=MS.gene92930.t1;Parent=MS.gene92930 |
| chr5.1 | exon | 33528578 | 33528644 | 33528578 | ID=MS.gene92930.t1.exon1;Parent=MS.gene92930.t1 |
| chr5.1 | CDS | 33528578 | 33528644 | 33528578 | ID=cds.MS.gene92930.t1;Parent=MS.gene92930.t1 |
| chr5.1 | exon | 33526259 | 33527721 | 33526259 | ID=MS.gene92930.t1.exon2;Parent=MS.gene92930.t1 |
| chr5.1 | CDS | 33526259 | 33527721 | 33526259 | ID=cds.MS.gene92930.t1;Parent=MS.gene92930.t1 |
| Gene Sequence |
| Protein sequence |
