Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054901.t1 | XP_013442714.1 | 95.2 | 398 | 19 | 0 | 1 | 398 | 1 | 398 | 3.60E-215 | 757.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054901.t1 | Q6GMB0 | 31.6 | 370 | 223 | 9 | 37 | 398 | 39 | 386 | 7.2e-39 | 162.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054901.t1 | A0A072TGP8 | 95.2 | 398 | 19 | 0 | 1 | 398 | 1 | 398 | 2.6e-215 | 757.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054901 | MS.gene30033 | 0.896051 | 5.35E-76 | -1.69E-46 |
| MS.gene054901 | MS.gene49714 | 0.806695 | 7.26E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054901 | MS.gene05127 | PPI |
| MS.gene054901 | MS.gene009653 | PPI |
| MS.gene054901 | MS.gene53889 | PPI |
| MS.gene054901 | MS.gene049594 | PPI |
| MS.gene98045 | MS.gene054901 | PPI |
| MS.gene054901 | MS.gene26246 | PPI |
| MS.gene017247 | MS.gene054901 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054901.t1 | MTR_0103s0100 | 97.739 | 398 | 9 | 0 | 1 | 398 | 1 | 398 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054901.t1 | AT2G44580 | 55.696 | 395 | 156 | 4 | 10 | 398 | 5 | 386 | 2.91e-158 | 451 |
| MS.gene054901.t1 | AT2G44580 | 55.696 | 395 | 156 | 4 | 10 | 398 | 5 | 386 | 2.91e-158 | 451 |
Find 79 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCTCTTACCTCCTTTC+AGG | 0.140263 | 7.3:-63813600 | None:intergenic |
| GTTGCATATCACCCTGATTT+TGG | 0.178187 | 7.3:+63810850 | MS.gene054901:CDS |
| TACTATCTTGCACTGAAAAT+TGG | 0.229137 | 7.3:-63814015 | None:intergenic |
| CCTGAAGTCTGCTGTGGTTC+TGG | 0.271122 | 7.3:-63810781 | None:intergenic |
| CAATTTAAGTTTATCAAGTC+TGG | 0.284052 | 7.3:-63813143 | None:intergenic |
| TACCTTTCATTCAAAACATC+TGG | 0.299684 | 7.3:-63810919 | None:intergenic |
| TACGATTCTGATTGATTTGC+TGG | 0.300346 | 7.3:-63813019 | None:intergenic |
| GGAGTTAAGGGTTGGATTGC+AGG | 0.317393 | 7.3:+63813291 | MS.gene054901:CDS |
| CTAGATCAGGATTATATAAC+TGG | 0.322642 | 7.3:+63813233 | MS.gene054901:CDS |
| ATAATATCTGAACCTGATAT+AGG | 0.331471 | 7.3:-63813833 | None:intergenic |
| GAGTTACATGGACATGATTC+TGG | 0.333299 | 7.3:+63813360 | MS.gene054901:CDS |
| TCATCATGAGGTCCAAAATC+AGG | 0.344472 | 7.3:-63810862 | None:intergenic |
| AAAAGTTGTACCTGGTAGTA+TGG | 0.354433 | 7.3:+63813102 | MS.gene054901:CDS |
| ACATATGCTATGAAGTTTGT+TGG | 0.371449 | 7.3:+63812968 | MS.gene054901:CDS |
| AGCTAGTGACGAGGAGTTAA+GGG | 0.384193 | 7.3:+63813279 | MS.gene054901:CDS |
| GAGGTATTGACAGAGAAAAT+TGG | 0.391418 | 7.3:+63813697 | MS.gene054901:CDS |
| CCAGAACCACAGCAGACTTC+AGG | 0.399798 | 7.3:+63810781 | MS.gene054901:CDS |
| AAGATCTACAGCCCTATATC+AGG | 0.405081 | 7.3:+63813821 | MS.gene054901:CDS |
| AAGCTAGTGACGAGGAGTTA+AGG | 0.405465 | 7.3:+63813278 | MS.gene054901:CDS |
| TATTTCAGGATGGTCTTAAG+AGG | 0.410120 | 7.3:+63812905 | MS.gene054901:intron |
| TTTCAGAGAGCGTGCGAAAT+GGG | 0.422061 | 7.3:+63813792 | MS.gene054901:CDS |
| CTGTGGAGATCAATGGATAT+TGG | 0.428629 | 7.3:+63813323 | MS.gene054901:CDS |
| TAATATCTGAACCTGATATA+GGG | 0.441929 | 7.3:-63813832 | None:intergenic |
| TGGTACAAGCAAAACAGAAT+TGG | 0.457146 | 7.3:-63812996 | None:intergenic |
| AAAGTGGGATGCATTTCATC+TGG | 0.459477 | 7.3:-63813658 | None:intergenic |
| CGCACGCTCTCTGAAAAGAA+TGG | 0.463696 | 7.3:-63813785 | None:intergenic |
| CAAAGAACTGCATCTTCGTC+AGG | 0.467011 | 7.3:-63812932 | None:intergenic |
| CTTTCAGCTGTGGAGATCAA+TGG | 0.471420 | 7.3:+63813316 | MS.gene054901:CDS |
| CAATGCCTTGCAAGTACCTT+CGG | 0.476106 | 7.3:-63813475 | None:intergenic |
| TGGTAGTATGGAGCTTATTG+AGG | 0.485548 | 7.3:+63813114 | MS.gene054901:CDS |
| AGAATGGAGAAGCGTTCAGC+TGG | 0.490161 | 7.3:-63813769 | None:intergenic |
| AATTTAAGTTTATCAAGTCT+GGG | 0.490225 | 7.3:-63813142 | None:intergenic |
| AAAATTCAGTGTTGAATGAC+TGG | 0.512521 | 7.3:+63813395 | MS.gene054901:CDS |
| AGAAAATTGGAGTTGAGACA+TGG | 0.514429 | 7.3:+63813710 | MS.gene054901:CDS |
| GAGAATCACGAATCTAGATC+AGG | 0.514548 | 7.3:+63813220 | MS.gene054901:CDS |
| ACCTTCCATAAGATCAAAAG+TGG | 0.518379 | 7.3:-63813674 | None:intergenic |
| ATTGCAGGCTCTTTCAGCTG+TGG | 0.518858 | 7.3:+63813306 | MS.gene054901:CDS |
| GCAAAGTGGTGTGTGGAAGT+TGG | 0.529433 | 7.3:+63813540 | MS.gene054901:CDS |
| GTACCAGGTCTTTCTGCAGA+AGG | 0.532732 | 7.3:+63813943 | MS.gene054901:CDS |
| GTGGAAGTTGGATGAGAAGC+GGG | 0.536854 | 7.3:+63813552 | MS.gene054901:CDS |
| AAGCGTTCAGCTGGAGTGGA+AGG | 0.542810 | 7.3:-63813760 | None:intergenic |
| GGAGAAGCGTTCAGCTGGAG+TGG | 0.543503 | 7.3:-63813764 | None:intergenic |
| ACCTTTCATTCAAAACATCT+GGG | 0.545854 | 7.3:-63810918 | None:intergenic |
| TGATCTCATAATTCTAGAGC+TGG | 0.546425 | 7.3:+63810882 | MS.gene054901:CDS |
| GCAACAGAAATCGATGATCC+AGG | 0.552834 | 7.3:-63810832 | None:intergenic |
| AGATGAAGTTGTGAATATGC+TGG | 0.555808 | 7.3:+63813438 | MS.gene054901:CDS |
| AGTGACGAGGAGTTAAGGGT+TGG | 0.559394 | 7.3:+63813283 | MS.gene054901:CDS |
| GAGAGCGTGCGAAATGGGAA+TGG | 0.559837 | 7.3:+63813797 | MS.gene054901:CDS |
| CAGATTTGATGAGAATGACA+TGG | 0.560594 | 7.3:+63813186 | MS.gene054901:CDS |
| CATCATGAGGTCCAAAATCA+GGG | 0.563023 | 7.3:-63810861 | None:intergenic |
| ATTAGTTGATGAGAGTTACA+TGG | 0.564361 | 7.3:+63813348 | MS.gene054901:CDS |
| TTCAGGGATCTGGATGTACC+AGG | 0.570204 | 7.3:+63813928 | MS.gene054901:intron |
| ATTTAAGTTTATCAAGTCTG+GGG | 0.591494 | 7.3:-63813141 | None:intergenic |
| GATTTCCGAAGGTACTTGCA+AGG | 0.595602 | 7.3:+63813470 | MS.gene054901:CDS |
| TTTAAGTTTATCAAGTCTGG+GGG | 0.597237 | 7.3:-63813140 | None:intergenic |
| GTGAATATGCTGGAATCAGA+TGG | 0.612073 | 7.3:+63813448 | MS.gene054901:CDS |
| ACACTTAGACATATGTCACC+TGG | 0.612546 | 7.3:+63810814 | MS.gene054901:CDS |
| AAACCTTCTGCAGAAAGACC+TGG | 0.615596 | 7.3:-63813946 | None:intergenic |
| GCTCCTCCTGAAGTCTGCTG+TGG | 0.628242 | 7.3:-63810787 | None:intergenic |
| GAAAATTGGAGTTGAGACAT+GGG | 0.629514 | 7.3:+63813711 | MS.gene054901:CDS |
| GGAATCAGATGGATTTCCGA+AGG | 0.635324 | 7.3:+63813459 | MS.gene054901:CDS |
| TCAATAAGCTCCATACTACC+AGG | 0.636229 | 7.3:-63813112 | None:intergenic |
| TATGCTAGAGAAATCCTGAA+AGG | 0.639851 | 7.3:+63813586 | MS.gene054901:CDS |
| AGTGTACTAAAAGTTGTACC+TGG | 0.641842 | 7.3:+63813094 | MS.gene054901:CDS |
| GCTAGAGAAATCCTGAAAGG+AGG | 0.643390 | 7.3:+63813589 | MS.gene054901:CDS |
| TGTGGAAGTTGGATGAGAAG+CGG | 0.646023 | 7.3:+63813551 | MS.gene054901:CDS |
| GAACCACAGCAGACTTCAGG+AGG | 0.646781 | 7.3:+63810784 | MS.gene054901:CDS |
| ATTGGATCATCATTAGCCGA+CGG | 0.649023 | 7.3:-63813997 | None:intergenic |
| GATTCTGATTGATTTGCTGG+TGG | 0.656551 | 7.3:-63813016 | None:intergenic |
| ACAGCAGACTTCAGGAGGAG+CGG | 0.657032 | 7.3:+63810789 | MS.gene054901:CDS |
| ATTGCATGCAAAGTGGTGTG+TGG | 0.666073 | 7.3:+63813533 | MS.gene054901:CDS |
| CCTTCCATAAGATCAAAAGT+GGG | 0.666519 | 7.3:-63813673 | None:intergenic |
| TGGAAGGCAATGAAGAGACA+CGG | 0.669323 | 7.3:-63813744 | None:intergenic |
| GAAAATGATTGCATGCAAAG+TGG | 0.671448 | 7.3:+63813526 | MS.gene054901:CDS |
| AGGCAATGAAGAGACACGGA+AGG | 0.679043 | 7.3:-63813740 | None:intergenic |
| TTGCTTGCATGTGTATGCCA+AGG | 0.692578 | 7.3:+63813495 | MS.gene054901:CDS |
| CACTCGAAAGACACAACCGT+CGG | 0.705980 | 7.3:+63813981 | MS.gene054901:CDS |
| AGAATTATGAGATCATCATG+AGG | 0.708784 | 7.3:-63810874 | None:intergenic |
| AAATATTCAAGCTAGTGACG+AGG | 0.720450 | 7.3:+63813270 | MS.gene054901:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATGACCATAATATT+AGG | + | chr7.3:63812758-63812777 | MS.gene054901:intron | 15.0% |
| !! | AAAATCCATCTCAATTTATT+TGG | + | chr7.3:63811285-63811304 | MS.gene054901:intron | 20.0% |
| !! | AAAATTATAGTACCCAAAAA+TGG | + | chr7.3:63811453-63811472 | MS.gene054901:intron | 20.0% |
| !! | AATAGCATTATGATTTCTTA+TGG | - | chr7.3:63811845-63811864 | None:intergenic | 20.0% |
| !! | ATTAGACATATCAAAAGAAA+CGG | - | chr7.3:63811813-63811832 | None:intergenic | 20.0% |
| !! | TAACTGAAATCCTAATATTA+TGG | - | chr7.3:63812771-63812790 | None:intergenic | 20.0% |
| !! | TCGAAAAAACAATATAAAGA+TGG | - | chr7.3:63811108-63811127 | None:intergenic | 20.0% |
| !! | TCTAAGTAACTATTGTAATT+AGG | - | chr7.3:63812795-63812814 | None:intergenic | 20.0% |
| !!! | AATTTAAGTTTATCAAGTCT+GGG | - | chr7.3:63813145-63813164 | None:intergenic | 20.0% |
| !!! | ATGAGTTTTTGACTTATTTA+AGG | + | chr7.3:63811151-63811170 | MS.gene054901:intron | 20.0% |
| !!! | TTCTAATTTTGAATGTTTCA+GGG | + | chr7.3:63813912-63813931 | MS.gene054901:intron | 20.0% |
| !!! | TTTCTAATTTTGAATGTTTC+AGG | + | chr7.3:63813911-63813930 | MS.gene054901:intron | 20.0% |
| !!! | TTTGGGTACTATAATTTTAT+TGG | - | chr7.3:63811451-63811470 | None:intergenic | 20.0% |
| ! | AACAACCAAATAAATTGAGA+TGG | - | chr7.3:63811293-63811312 | None:intergenic | 25.0% |
| ! | ACATGAAAATGTGTAGAAAA+GGG | - | chr7.3:63812208-63812227 | None:intergenic | 25.0% |
| ! | AGAAATCATAATGCTATTCT+TGG | + | chr7.3:63811847-63811866 | MS.gene054901:intron | 25.0% |
| ! | ATAATATCTGAACCTGATAT+AGG | - | chr7.3:63813836-63813855 | None:intergenic | 25.0% |
| ! | ATTTGTAACTCCTTGAAAAA+AGG | + | chr7.3:63810963-63810982 | MS.gene054901:intron | 25.0% |
| ! | CTTGAAAAAAGGAATGAAAT+GGG | + | chr7.3:63810974-63810993 | MS.gene054901:intron | 25.0% |
| ! | GAACACATAAATAGTAAGAA+AGG | - | chr7.3:63812655-63812674 | None:intergenic | 25.0% |
| ! | TAATATCTGAACCTGATATA+GGG | - | chr7.3:63813835-63813854 | None:intergenic | 25.0% |
| ! | TAATGTCATTCAATTGCATA+TGG | - | chr7.3:63812013-63812032 | None:intergenic | 25.0% |
| ! | TTACATTAGAACCAAAGTAA+AGG | + | chr7.3:63812456-63812475 | MS.gene054901:intron | 25.0% |
| ! | TTGCTTTAATTACCGTAATT+AGG | + | chr7.3:63811063-63811082 | MS.gene054901:intron | 25.0% |
| !! | AACTTTTCAATATAACCTAG+GGG | - | chr7.3:63812172-63812191 | None:intergenic | 25.0% |
| !! | AGTATTGTGATTCAGTATTT+TGG | - | chr7.3:63812070-63812089 | None:intergenic | 25.0% |
| !! | ATCATTTTCTTTTACTTCCT+TGG | - | chr7.3:63813515-63813534 | None:intergenic | 25.0% |
| !! | ATTTAAGTTTATCAAGTCTG+GGG | - | chr7.3:63813144-63813163 | None:intergenic | 25.0% |
| !! | CAACTTTTCAATATAACCTA+GGG | - | chr7.3:63812173-63812192 | None:intergenic | 25.0% |
| !! | CAATTTAAGTTTATCAAGTC+TGG | - | chr7.3:63813146-63813165 | None:intergenic | 25.0% |
| !! | GAGAAAGTTAGAGAATTTTA+TGG | + | chr7.3:63813615-63813634 | MS.gene054901:CDS | 25.0% |
| !! | GAGACATTTTTATATCGAAA+AGG | - | chr7.3:63811722-63811741 | None:intergenic | 25.0% |
| !! | TAGAGAATTTTATGGAAGAA+TGG | + | chr7.3:63813623-63813642 | MS.gene054901:CDS | 25.0% |
| !!! | ATTTGATTTTATGAAGCTAG+TGG | + | chr7.3:63811216-63811235 | MS.gene054901:intron | 25.0% |
| !!! | CATATTTTAACAGAAGATCT+TGG | - | chr7.3:63811910-63811929 | None:intergenic | 25.0% |
| !!! | CGTAATTTTAATTTGACTCT+TGG | + | chr7.3:63812397-63812416 | MS.gene054901:intron | 25.0% |
| !!! | GCTTTTTGGATATTTTAAAG+TGG | - | chr7.3:63811509-63811528 | None:intergenic | 25.0% |
| ACATATGCTATGAAGTTTGT+TGG | + | chr7.3:63812968-63812987 | MS.gene054901:CDS | 30.0% | |
| ACATGGTTTCTTTCTATTTC+AGG | + | chr7.3:63812891-63812910 | MS.gene054901:intron | 30.0% | |
| ACCTTTCATTCAAAACATCT+GGG | - | chr7.3:63810921-63810940 | None:intergenic | 30.0% | |
| AGAAATGTAGAACACAGAAA+TGG | - | chr7.3:63812615-63812634 | None:intergenic | 30.0% | |
| AGAATTATGAGATCATCATG+AGG | - | chr7.3:63810877-63810896 | None:intergenic | 30.0% | |
| ATAAGTAAGGAAAGAGAGAA+AGG | - | chr7.3:63812868-63812887 | None:intergenic | 30.0% | |
| ATTCTTCACTTAGCTTATCA+TGG | + | chr7.3:63812499-63812518 | MS.gene054901:intron | 30.0% | |
| ATTGCTGAATTAAACCATTG+AGG | - | chr7.3:63811333-63811352 | None:intergenic | 30.0% | |
| CCTAGGTTATATTGAAAAGT+TGG | + | chr7.3:63812171-63812190 | MS.gene054901:intron | 30.0% | |
| CCTTGAAAAAAGGAATGAAA+TGG | + | chr7.3:63810973-63810992 | MS.gene054901:intron | 30.0% | |
| CTAGATCAGGATTATATAAC+TGG | + | chr7.3:63813233-63813252 | MS.gene054901:CDS | 30.0% | |
| CTCAAGGATAGTTATGAAAT+TGG | + | chr7.3:63811628-63811647 | MS.gene054901:intron | 30.0% | |
| CTTATTTAAGGAGCTTTCAA+TGG | + | chr7.3:63811163-63811182 | MS.gene054901:intron | 30.0% | |
| CTTTAATTACCGTAATTAGG+TGG | + | chr7.3:63811066-63811085 | MS.gene054901:intron | 30.0% | |
| CTTTCCTTACTTATGTTACA+TGG | + | chr7.3:63812874-63812893 | MS.gene054901:intron | 30.0% | |
| GAAACCATGTAACATAAGTA+AGG | - | chr7.3:63812881-63812900 | None:intergenic | 30.0% | |
| GACATGAAAATGTGTAGAAA+AGG | - | chr7.3:63812209-63812228 | None:intergenic | 30.0% | |
| GGATTTCAAACATTGAAAAG+AGG | - | chr7.3:63812547-63812566 | None:intergenic | 30.0% | |
| TACCTTTCATTCAAAACATC+TGG | - | chr7.3:63810922-63810941 | None:intergenic | 30.0% | |
| TGAATTAAACCATTGAGGTT+TGG | - | chr7.3:63811328-63811347 | None:intergenic | 30.0% | |
| TTGTCAAGATTCAATTAGTG+TGG | - | chr7.3:63811658-63811677 | None:intergenic | 30.0% | |
| ! | AAAATTCAGTGTTGAATGAC+TGG | + | chr7.3:63813395-63813414 | MS.gene054901:CDS | 30.0% |
| ! | AATAGTCATACACAGCTTTT+TGG | - | chr7.3:63811523-63811542 | None:intergenic | 30.0% |
| ! | AGAATTTTATGGAAGAATGG+AGG | + | chr7.3:63813626-63813645 | MS.gene054901:CDS | 30.0% |
| ! | ATACACCAAAACCTTTTCAT+AGG | + | chr7.3:63811549-63811568 | MS.gene054901:intron | 30.0% |
| ! | ATGGATTTTCATTTCATCAG+AGG | - | chr7.3:63811274-63811293 | None:intergenic | 30.0% |
| ! | CACATTTTCATGTCTTTTCT+TGG | + | chr7.3:63812215-63812234 | MS.gene054901:intron | 30.0% |
| ! | CCAACTTTTCAATATAACCT+AGG | - | chr7.3:63812174-63812193 | None:intergenic | 30.0% |
| ! | GTTGTTACTTAGGATAAAAG+TGG | - | chr7.3:63811879-63811898 | None:intergenic | 30.0% |
| ! | TGATACTTTGTTTGAGAGAT+TGG | + | chr7.3:63811940-63811959 | MS.gene054901:intron | 30.0% |
| ! | TTTAAGTTTATCAAGTCTGG+GGG | - | chr7.3:63813143-63813162 | None:intergenic | 30.0% |
| !! | AGTTTTTCAACAAGTCTTCT+AGG | + | chr7.3:63811696-63811715 | MS.gene054901:intron | 30.0% |
| !! | ATTAGTTGATGAGAGTTACA+TGG | + | chr7.3:63813348-63813367 | MS.gene054901:CDS | 30.0% |
| !! | GGTAGAATTTGTTGTTACTT+AGG | - | chr7.3:63811889-63811908 | None:intergenic | 30.0% |
| !!! | CCATTTCATTCCTTTTTTCA+AGG | - | chr7.3:63810976-63810995 | None:intergenic | 30.0% |
| AAAAGTTGTACCTGGTAGTA+TGG | + | chr7.3:63813102-63813121 | MS.gene054901:CDS | 35.0% | |
| AAACATTGAAAAGAGGAGAG+TGG | - | chr7.3:63812540-63812559 | None:intergenic | 35.0% | |
| AAATATTCAAGCTAGTGACG+AGG | + | chr7.3:63813270-63813289 | MS.gene054901:CDS | 35.0% | |
| AAATGTGTAGAAAAGGGACT+TGG | - | chr7.3:63812202-63812221 | None:intergenic | 35.0% | |
| AATGGCTTAGTGAAGACATT+TGG | + | chr7.3:63811181-63811200 | MS.gene054901:intron | 35.0% | |
| ACCTTCCATAAGATCAAAAG+TGG | - | chr7.3:63813677-63813696 | None:intergenic | 35.0% | |
| AGAAAATTGGAGTTGAGACA+TGG | + | chr7.3:63813710-63813729 | MS.gene054901:CDS | 35.0% | |
| AGATGAAGTTGTGAATATGC+TGG | + | chr7.3:63813438-63813457 | MS.gene054901:CDS | 35.0% | |
| AGTCAAAAACTCATATGCTC+TGG | - | chr7.3:63811145-63811164 | None:intergenic | 35.0% | |
| AGTGTACTAAAAGTTGTACC+TGG | + | chr7.3:63813094-63813113 | MS.gene054901:CDS | 35.0% | |
| ATTAAGGGAGACCTATGAAA+AGG | - | chr7.3:63811563-63811582 | None:intergenic | 35.0% | |
| CAGATTTGATGAGAATGACA+TGG | + | chr7.3:63813186-63813205 | MS.gene054901:CDS | 35.0% | |
| CCACCACATATGAACTTATA+TGG | - | chr7.3:63811364-63811383 | None:intergenic | 35.0% | |
| CCATATAAGTTCATATGTGG+TGG | + | chr7.3:63811361-63811380 | MS.gene054901:intron | 35.0% | |
| CCTTCCATAAGATCAAAAGT+GGG | - | chr7.3:63813676-63813695 | None:intergenic | 35.0% | |
| CTTATCATGGTCTATGAGTT+TGG | + | chr7.3:63812512-63812531 | MS.gene054901:intron | 35.0% | |
| GAAAATGATTGCATGCAAAG+TGG | + | chr7.3:63813526-63813545 | MS.gene054901:CDS | 35.0% | |
| GAAAATTGGAGTTGAGACAT+GGG | + | chr7.3:63813711-63813730 | MS.gene054901:CDS | 35.0% | |
| GAGCCATATAAGTTCATATG+TGG | + | chr7.3:63811358-63811377 | MS.gene054901:intron | 35.0% | |
| GGTTTCTTTCTATTTCAGGA+TGG | + | chr7.3:63812895-63812914 | MS.gene054901:intron | 35.0% | |
| GTTTAAACTATGTCTGACGA+GGG | - | chr7.3:63812378-63812397 | None:intergenic | 35.0% | |
| TAAGTGAAGAATCACCACAA+AGG | - | chr7.3:63812491-63812510 | None:intergenic | 35.0% | |
| TATGCTAGAGAAATCCTGAA+AGG | + | chr7.3:63813586-63813605 | MS.gene054901:CDS | 35.0% | |
| TGGTACAAGCAAAACAGAAT+TGG | - | chr7.3:63812999-63813018 | None:intergenic | 35.0% | |
| ! | GAGTTTGTTCCACCTAATTA+CGG | - | chr7.3:63811078-63811097 | None:intergenic | 35.0% |
| ! | TATTTCAGGATGGTCTTAAG+AGG | + | chr7.3:63812905-63812924 | MS.gene054901:intron | 35.0% |
| ! | TTTTGAATGTTTCAGGGATC+TGG | + | chr7.3:63813918-63813937 | MS.gene054901:intron | 35.0% |
| ! | TTTTGATCTTATGGAAGGTG+AGG | + | chr7.3:63813678-63813697 | MS.gene054901:CDS | 35.0% |
| !! | CACAGAAATGGATTAGAAAC+TGG | - | chr7.3:63812603-63812622 | None:intergenic | 35.0% |
| !! | GAGGTATTGACAGAGAAAAT+TGG | + | chr7.3:63813697-63813716 | MS.gene054901:CDS | 35.0% |
| !! | TACGATTCTGATTGATTTGC+TGG | - | chr7.3:63813022-63813041 | None:intergenic | 35.0% |
| !! | TCCCAGATGTTTTGAATGAA+AGG | + | chr7.3:63810917-63810936 | MS.gene054901:CDS | 35.0% |
| !! | TGATCTCATAATTCTAGAGC+TGG | + | chr7.3:63810882-63810901 | MS.gene054901:CDS | 35.0% |
| !!! | TGGATATTTTAAAGTGGCCT+GGG | - | chr7.3:63811503-63811522 | None:intergenic | 35.0% |
| !!! | TTGGATATTTTAAAGTGGCC+TGG | - | chr7.3:63811504-63811523 | None:intergenic | 35.0% |
| AAAAATGTCTCCTCCTGACT+TGG | + | chr7.3:63811731-63811750 | MS.gene054901:intron | 40.0% | |
| AAAGGTTCCTCATACCTTTG+TGG | + | chr7.3:63812474-63812493 | MS.gene054901:intron | 40.0% | |
| AAAGTGGGATGCATTTCATC+TGG | - | chr7.3:63813661-63813680 | None:intergenic | 40.0% | |
| AAGATCTACAGCCCTATATC+AGG | + | chr7.3:63813821-63813840 | MS.gene054901:CDS | 40.0% | |
| AATGACATTAGAAAGCCGAG+TGG | + | chr7.3:63812023-63812042 | MS.gene054901:intron | 40.0% | |
| ACACTTAGACATATGTCACC+TGG | + | chr7.3:63810814-63810833 | MS.gene054901:CDS | 40.0% | |
| ACCTCTAAGCAACAAAGGAA+GGG | - | chr7.3:63812331-63812350 | None:intergenic | 40.0% | |
| ACTTGGCAAAAATTTGGCAC+TGG | + | chr7.3:63811748-63811767 | MS.gene054901:intron | 40.0% | |
| ACTTTCTCTTACCTCCTTTC+AGG | - | chr7.3:63813603-63813622 | None:intergenic | 40.0% | |
| AGGTGTCTTCATGCATTTGA+AGG | + | chr7.3:63812295-63812314 | MS.gene054901:intron | 40.0% | |
| ATTGGATCATCATTAGCCGA+CGG | - | chr7.3:63814000-63814019 | None:intergenic | 40.0% | |
| ATTGTCTACACCAACTTCCT+AGG | - | chr7.3:63812111-63812130 | None:intergenic | 40.0% | |
| CATCATGAGGTCCAAAATCA+GGG | - | chr7.3:63810864-63810883 | None:intergenic | 40.0% | |
| CGTTTAAACTATGTCTGACG+AGG | - | chr7.3:63812379-63812398 | None:intergenic | 40.0% | |
| CTGTGGAGATCAATGGATAT+TGG | + | chr7.3:63813323-63813342 | MS.gene054901:CDS | 40.0% | |
| GAAACATCTCCAAACCTCAA+TGG | + | chr7.3:63811316-63811335 | MS.gene054901:intron | 40.0% | |
| GAACTTGTAGGAGTTTCAAG+AGG | + | chr7.3:63811770-63811789 | MS.gene054901:intron | 40.0% | |
| GAAGACACCTTGGAAAACTT+GGG | - | chr7.3:63812285-63812304 | None:intergenic | 40.0% | |
| GAGAATCACGAATCTAGATC+AGG | + | chr7.3:63813220-63813239 | MS.gene054901:CDS | 40.0% | |
| GAGTTACATGGACATGATTC+TGG | + | chr7.3:63813360-63813379 | MS.gene054901:CDS | 40.0% | |
| GGTATGAGGAACCTTTACTT+TGG | - | chr7.3:63812470-63812489 | None:intergenic | 40.0% | |
| GTGAATATGCTGGAATCAGA+TGG | + | chr7.3:63813448-63813467 | MS.gene054901:CDS | 40.0% | |
| TAAGGAAAGAGAGAAAGGCA+GGG | - | chr7.3:63812863-63812882 | None:intergenic | 40.0% | |
| TCAAATGCATGAAGACACCT+TGG | - | chr7.3:63812295-63812314 | None:intergenic | 40.0% | |
| TCAATAAGCTCCATACTACC+AGG | - | chr7.3:63813115-63813134 | None:intergenic | 40.0% | |
| TCATCATGAGGTCCAAAATC+AGG | - | chr7.3:63810865-63810884 | None:intergenic | 40.0% | |
| TGAAGACACCTTGGAAAACT+TGG | - | chr7.3:63812286-63812305 | None:intergenic | 40.0% | |
| TGGTAGTATGGAGCTTATTG+AGG | + | chr7.3:63813114-63813133 | MS.gene054901:CDS | 40.0% | |
| TTGGAAAACTTGGGAAAGGA+AGG | - | chr7.3:63812276-63812295 | None:intergenic | 40.0% | |
| TTGTCTACACCAACTTCCTA+GGG | - | chr7.3:63812110-63812129 | None:intergenic | 40.0% | |
| ! | AACTCATATGCTCTGGCTTA+AGG | - | chr7.3:63811138-63811157 | None:intergenic | 40.0% |
| ! | AATTTGGCACTGGAACTTGT+AGG | + | chr7.3:63811758-63811777 | MS.gene054901:intron | 40.0% |
| ! | ACTAGTTTGAAAACTCCCCT+AGG | + | chr7.3:63812154-63812173 | MS.gene054901:intron | 40.0% |
| ! | ACTCATATGCTCTGGCTTAA+GGG | - | chr7.3:63811137-63811156 | None:intergenic | 40.0% |
| ! | AGAATCACCACAAAGGTATG+AGG | - | chr7.3:63812484-63812503 | None:intergenic | 40.0% |
| ! | CAAATTTTTGCCAAGTCAGG+AGG | - | chr7.3:63811744-63811763 | None:intergenic | 40.0% |
| ! | GGAGACCTATGAAAAGGTTT+TGG | - | chr7.3:63811557-63811576 | None:intergenic | 40.0% |
| ! | GTTGCATATCACCCTGATTT+TGG | + | chr7.3:63810850-63810869 | MS.gene054901:CDS | 40.0% |
| ! | TGCCAAATTTTTGCCAAGTC+AGG | - | chr7.3:63811747-63811766 | None:intergenic | 40.0% |
| ! | TTCCTTTCCCAAGTTTTCCA+AGG | + | chr7.3:63812275-63812294 | MS.gene054901:intron | 40.0% |
| !! | CCCACTTTTGATCTTATGGA+AGG | + | chr7.3:63813673-63813692 | MS.gene054901:CDS | 40.0% |
| !! | CTCCTGACTTGGCAAAAATT+TGG | + | chr7.3:63811742-63811761 | MS.gene054901:intron | 40.0% |
| !! | GATTCTGATTGATTTGCTGG+TGG | - | chr7.3:63813019-63813038 | None:intergenic | 40.0% |
| !! | GCATCCCACTTTTGATCTTA+TGG | + | chr7.3:63813669-63813688 | MS.gene054901:CDS | 40.0% |
| !!! | GAGAGCATTGTGCATCTTTT+TGG | + | chr7.3:63812430-63812449 | MS.gene054901:intron | 40.0% |
| AAACCTTCTGCAGAAAGACC+TGG | - | chr7.3:63813949-63813968 | None:intergenic | 45.0% | |
| AACTTGTCAAGCTATGCCCT+AGG | + | chr7.3:63812091-63812110 | MS.gene054901:intron | 45.0% | |
| AAGCTAGTGACGAGGAGTTA+AGG | + | chr7.3:63813278-63813297 | MS.gene054901:CDS | 45.0% | |
| AGCTAGTGACGAGGAGTTAA+GGG | + | chr7.3:63813279-63813298 | MS.gene054901:CDS | 45.0% | |
| AGGTGACCTCTAAGCAACAA+AGG | - | chr7.3:63812336-63812355 | None:intergenic | 45.0% | |
| ATTGCATGCAAAGTGGTGTG+TGG | + | chr7.3:63813533-63813552 | MS.gene054901:CDS | 45.0% | |
| CAAAGAACTGCATCTTCGTC+AGG | - | chr7.3:63812935-63812954 | None:intergenic | 45.0% | |
| CAATGCCTTGCAAGTACCTT+CGG | - | chr7.3:63813478-63813497 | None:intergenic | 45.0% | |
| CACCTTGGAAAACTTGGGAA+AGG | - | chr7.3:63812280-63812299 | None:intergenic | 45.0% | |
| CTTTCAGCTGTGGAGATCAA+TGG | + | chr7.3:63813316-63813335 | MS.gene054901:CDS | 45.0% | |
| GACCTCTAAGCAACAAAGGA+AGG | - | chr7.3:63812332-63812351 | None:intergenic | 45.0% | |
| GCAACAGAAATCGATGATCC+AGG | - | chr7.3:63810835-63810854 | None:intergenic | 45.0% | |
| GCATTCTGTTGCTCTTCTCA+AGG | + | chr7.3:63811612-63811631 | MS.gene054901:intron | 45.0% | |
| GCTAGAGAAATCCTGAAAGG+AGG | + | chr7.3:63813589-63813608 | MS.gene054901:CDS | 45.0% | |
| GGGCAAAGTCTAATACTGAC+AGG | - | chr7.3:63811483-63811502 | None:intergenic | 45.0% | |
| GTAAGGAAAGAGAGAAAGGC+AGG | - | chr7.3:63812864-63812883 | None:intergenic | 45.0% | |
| GTCAGTATTAGACTTTGCCC+AGG | + | chr7.3:63811483-63811502 | MS.gene054901:intron | 45.0% | |
| TCTAAGTGAAGCTGACCACT+CGG | - | chr7.3:63812041-63812060 | None:intergenic | 45.0% | |
| TCTTCATGTCCTCCTTGAGT+TGG | + | chr7.3:63812240-63812259 | MS.gene054901:intron | 45.0% | |
| TGGAAGGCAATGAAGAGACA+CGG | - | chr7.3:63813747-63813766 | None:intergenic | 45.0% | |
| TGTGGAAGTTGGATGAGAAG+CGG | + | chr7.3:63813551-63813570 | MS.gene054901:CDS | 45.0% | |
| TTGCTTGCATGTGTATGCCA+AGG | + | chr7.3:63813495-63813514 | MS.gene054901:CDS | 45.0% | |
| ! | GGAATCAGATGGATTTCCGA+AGG | + | chr7.3:63813459-63813478 | MS.gene054901:CDS | 45.0% |
| ! | TTTCAGAGAGCGTGCGAAAT+GGG | + | chr7.3:63813792-63813811 | MS.gene054901:CDS | 45.0% |
| !! | ACTGACAGGTGAGCCATTTT+TGG | - | chr7.3:63811469-63811488 | None:intergenic | 45.0% |
| !! | GATTTCCGAAGGTACTTGCA+AGG | + | chr7.3:63813470-63813489 | MS.gene054901:CDS | 45.0% |
| !! | TTTTCAGAGAGCGTGCGAAA+TGG | + | chr7.3:63813791-63813810 | MS.gene054901:CDS | 45.0% |
| !!! | CTGACAGGTGAGCCATTTTT+GGG | - | chr7.3:63811468-63811487 | None:intergenic | 45.0% |
| !! | CTAATTAAAAAATATATTAA+GGG | - | chr7.3:63811578-63811597 | None:intergenic | 5.0% |
| !! | TCTAATTAAAAAATATATTA+AGG | - | chr7.3:63811579-63811598 | None:intergenic | 5.0% |
| !!! | AAAATTTTAATTAAAAGAAA+TGG | - | chr7.3:63812568-63812587 | None:intergenic | 5.0% |
| AGGCAATGAAGAGACACGGA+AGG | - | chr7.3:63813743-63813762 | None:intergenic | 50.0% | |
| AGGGCAAAGAGAGCCTTTGA+GGG | - | chr7.3:63812359-63812378 | None:intergenic | 50.0% | |
| AGTGACGAGGAGTTAAGGGT+TGG | + | chr7.3:63813283-63813302 | MS.gene054901:CDS | 50.0% | |
| ATTGCAGGCTCTTTCAGCTG+TGG | + | chr7.3:63813306-63813325 | MS.gene054901:CDS | 50.0% | |
| CAAGCTATGCCCTAGGAAGT+TGG | + | chr7.3:63812098-63812117 | MS.gene054901:intron | 50.0% | |
| CACTCGAAAGACACAACCGT+CGG | + | chr7.3:63813981-63814000 | MS.gene054901:CDS | 50.0% | |
| CTACATGCACCAACTCAAGG+AGG | - | chr7.3:63812252-63812271 | None:intergenic | 50.0% | |
| GCAAAGTGGTGTGTGGAAGT+TGG | + | chr7.3:63813540-63813559 | MS.gene054901:CDS | 50.0% | |
| GGACTACATGCACCAACTCA+AGG | - | chr7.3:63812255-63812274 | None:intergenic | 50.0% | |
| GGAGTTAAGGGTTGGATTGC+AGG | + | chr7.3:63813291-63813310 | MS.gene054901:CDS | 50.0% | |
| GTACCAGGTCTTTCTGCAGA+AGG | + | chr7.3:63813943-63813962 | MS.gene054901:CDS | 50.0% | |
| GTGGAAGTTGGATGAGAAGC+GGG | + | chr7.3:63813552-63813571 | MS.gene054901:CDS | 50.0% | |
| TTAGAGGTCACCTCCCTCAA+AGG | + | chr7.3:63812343-63812362 | MS.gene054901:intron | 50.0% | |
| TTCAGGGATCTGGATGTACC+AGG | + | chr7.3:63813928-63813947 | MS.gene054901:intron | 50.0% | |
| ! | CGCACGCTCTCTGAAAAGAA+TGG | - | chr7.3:63813788-63813807 | None:intergenic | 50.0% |
| ! | GCCCTTCCTTTGTTGCTTAG+AGG | + | chr7.3:63812327-63812346 | MS.gene054901:intron | 50.0% |
| !! | AGAATGGAGAAGCGTTCAGC+TGG | - | chr7.3:63813772-63813791 | None:intergenic | 50.0% |
| AAGCGTTCAGCTGGAGTGGA+AGG | - | chr7.3:63813763-63813782 | None:intergenic | 55.0% | |
| ACAGCAGACTTCAGGAGGAG+CGG | + | chr7.3:63810789-63810808 | MS.gene054901:CDS | 55.0% | |
| CCAGAACCACAGCAGACTTC+AGG | + | chr7.3:63810781-63810800 | MS.gene054901:CDS | 55.0% | |
| CCTGAAGTCTGCTGTGGTTC+TGG | - | chr7.3:63810784-63810803 | None:intergenic | 55.0% | |
| GAACCACAGCAGACTTCAGG+AGG | + | chr7.3:63810784-63810803 | MS.gene054901:CDS | 55.0% | |
| GAGGGCAAAGAGAGCCTTTG+AGG | - | chr7.3:63812360-63812379 | None:intergenic | 55.0% | |
| ! | GAGAGCGTGCGAAATGGGAA+TGG | + | chr7.3:63813797-63813816 | MS.gene054901:CDS | 55.0% |
| ! | GCAAAGAGAGCCTTTGAGGG+AGG | - | chr7.3:63812356-63812375 | None:intergenic | 55.0% |
| GCTCCTCCTGAAGTCTGCTG+TGG | - | chr7.3:63810790-63810809 | None:intergenic | 60.0% | |
| !! | GGAGAAGCGTTCAGCTGGAG+TGG | - | chr7.3:63813767-63813786 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 63810775 | 63814035 | 63810775 | ID=MS.gene054901 |
| chr7.3 | mRNA | 63810775 | 63814035 | 63810775 | ID=MS.gene054901.t1;Parent=MS.gene054901 |
| chr7.3 | exon | 63810775 | 63810938 | 63810775 | ID=MS.gene054901.t1.exon1;Parent=MS.gene054901.t1 |
| chr7.3 | CDS | 63810775 | 63810938 | 63810775 | ID=cds.MS.gene054901.t1;Parent=MS.gene054901.t1 |
| chr7.3 | exon | 63812913 | 63813842 | 63812913 | ID=MS.gene054901.t1.exon2;Parent=MS.gene054901.t1 |
| chr7.3 | CDS | 63812913 | 63813842 | 63812913 | ID=cds.MS.gene054901.t1;Parent=MS.gene054901.t1 |
| chr7.3 | exon | 63813933 | 63814035 | 63813933 | ID=MS.gene054901.t1.exon3;Parent=MS.gene054901.t1 |
| chr7.3 | CDS | 63813933 | 63814035 | 63813933 | ID=cds.MS.gene054901.t1;Parent=MS.gene054901.t1 |
| Gene Sequence |
| Protein sequence |
