Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30033.t1 | XP_013442714.1 | 95.2 | 398 | 19 | 0 | 1 | 398 | 1 | 398 | 3.60E-215 | 757.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30033.t1 | Q6GMB0 | 31.6 | 370 | 223 | 9 | 37 | 398 | 39 | 386 | 7.2e-39 | 162.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30033.t1 | A0A072TGP8 | 95.2 | 398 | 19 | 0 | 1 | 398 | 1 | 398 | 2.6e-215 | 757.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054901 | MS.gene30033 | 0.896051 | 5.35E-76 | -1.69E-46 |
| MS.gene055513 | MS.gene30033 | 0.803204 | 3.90E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30033 | MS.gene26246 | PPI |
| MS.gene30033 | MS.gene05127 | PPI |
| MS.gene30033 | MS.gene98045 | PPI |
| MS.gene30033 | MS.gene009653 | PPI |
| MS.gene30033 | MS.gene53889 | PPI |
| MS.gene30033 | MS.gene049594 | PPI |
| MS.gene30033 | MS.gene017247 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30033.t1 | MTR_0103s0100 | 97.739 | 398 | 9 | 0 | 1 | 398 | 1 | 398 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30033.t1 | AT2G44580 | 55.696 | 395 | 156 | 4 | 10 | 398 | 5 | 386 | 2.91e-158 | 451 |
| MS.gene30033.t1 | AT2G44580 | 55.696 | 395 | 156 | 4 | 10 | 398 | 5 | 386 | 2.91e-158 | 451 |
Find 79 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCTCTTACCTCCTTTC+AGG | 0.140263 | 7.1:-62528844 | None:intergenic |
| GTTGCATATCACCCTGATTT+TGG | 0.178187 | 7.1:+62526090 | MS.gene30033:CDS |
| TACTATCTTGCACTGAAAAT+TGG | 0.229137 | 7.1:-62529259 | None:intergenic |
| CCTGAAGTCTGCTGTGGTTC+TGG | 0.271122 | 7.1:-62526021 | None:intergenic |
| CAATTTAAGTTTATCAAGTC+TGG | 0.284052 | 7.1:-62528387 | None:intergenic |
| TACCTTTCATTCAAAACATC+TGG | 0.299684 | 7.1:-62526159 | None:intergenic |
| TACGATTCTGATTGATTTGC+TGG | 0.300346 | 7.1:-62528263 | None:intergenic |
| GGAGTTAAGGGTTGGATTGC+AGG | 0.317393 | 7.1:+62528535 | MS.gene30033:CDS |
| CTAGATCAGGATTATATAAC+TGG | 0.322642 | 7.1:+62528477 | MS.gene30033:CDS |
| ATAATATCTGAACCTGATAT+AGG | 0.331471 | 7.1:-62529077 | None:intergenic |
| GAGTTACATGGACATGATTC+TGG | 0.333299 | 7.1:+62528604 | MS.gene30033:CDS |
| TCATCATGAGGTCCAAAATC+AGG | 0.344472 | 7.1:-62526102 | None:intergenic |
| AAAAGTTGTACCTGGTAGTA+TGG | 0.354433 | 7.1:+62528346 | MS.gene30033:CDS |
| ACATATGCTATGAAGTTTGT+TGG | 0.371449 | 7.1:+62528212 | MS.gene30033:CDS |
| AGCTAGTGACGAGGAGTTAA+GGG | 0.384193 | 7.1:+62528523 | MS.gene30033:CDS |
| GAGGTATTGACAGAGAAAAT+TGG | 0.391418 | 7.1:+62528941 | MS.gene30033:CDS |
| CCAGAACCACAGCAGACTTC+AGG | 0.399798 | 7.1:+62526021 | MS.gene30033:CDS |
| AAGATCTACAGCCCTATATC+AGG | 0.405081 | 7.1:+62529065 | MS.gene30033:CDS |
| AAGCTAGTGACGAGGAGTTA+AGG | 0.405465 | 7.1:+62528522 | MS.gene30033:CDS |
| TATTTCAGGATGGTCTTAAG+AGG | 0.410120 | 7.1:+62528149 | MS.gene30033:intron |
| TTTCAGAGAGCGTGCGAAAT+GGG | 0.422061 | 7.1:+62529036 | MS.gene30033:CDS |
| CTGTGGAGATCAATGGATAT+TGG | 0.428629 | 7.1:+62528567 | MS.gene30033:CDS |
| TAATATCTGAACCTGATATA+GGG | 0.441929 | 7.1:-62529076 | None:intergenic |
| TGGTACAAGCAAAACAGAAT+TGG | 0.457146 | 7.1:-62528240 | None:intergenic |
| AAAGTGGGATGCATTTCATC+TGG | 0.459477 | 7.1:-62528902 | None:intergenic |
| CGCACGCTCTCTGAAAAGAA+TGG | 0.463696 | 7.1:-62529029 | None:intergenic |
| CAAAGAACTGCATCTTCGTC+AGG | 0.467011 | 7.1:-62528176 | None:intergenic |
| CTTTCAGCTGTGGAGATCAA+TGG | 0.471420 | 7.1:+62528560 | MS.gene30033:CDS |
| CAATGCCTTGCAAGTACCTT+CGG | 0.476106 | 7.1:-62528719 | None:intergenic |
| TGGTAGTATGGAGCTTATTG+AGG | 0.485548 | 7.1:+62528358 | MS.gene30033:CDS |
| AGAATGGAGAAGCGTTCAGC+TGG | 0.490161 | 7.1:-62529013 | None:intergenic |
| AATTTAAGTTTATCAAGTCT+GGG | 0.490225 | 7.1:-62528386 | None:intergenic |
| AAAATTCAGTGTTGAATGAC+TGG | 0.512521 | 7.1:+62528639 | MS.gene30033:CDS |
| AGAAAATTGGAGTTGAGACA+TGG | 0.514429 | 7.1:+62528954 | MS.gene30033:CDS |
| GAGAATCACGAATCTAGATC+AGG | 0.514548 | 7.1:+62528464 | MS.gene30033:CDS |
| ACCTTCCATAAGATCAAAAG+TGG | 0.518379 | 7.1:-62528918 | None:intergenic |
| ATTGCAGGCTCTTTCAGCTG+TGG | 0.518858 | 7.1:+62528550 | MS.gene30033:CDS |
| GCAAAGTGGTGTGTGGAAGT+TGG | 0.529433 | 7.1:+62528784 | MS.gene30033:CDS |
| GTACCAGGTCTTTCTGCAGA+AGG | 0.532732 | 7.1:+62529187 | MS.gene30033:CDS |
| GTGGAAGTTGGATGAGAAGC+GGG | 0.536854 | 7.1:+62528796 | MS.gene30033:CDS |
| AAGCGTTCAGCTGGAGTGGA+AGG | 0.542810 | 7.1:-62529004 | None:intergenic |
| GGAGAAGCGTTCAGCTGGAG+TGG | 0.543503 | 7.1:-62529008 | None:intergenic |
| ACCTTTCATTCAAAACATCT+GGG | 0.545854 | 7.1:-62526158 | None:intergenic |
| TGATCTCATAATTCTAGAGC+TGG | 0.546425 | 7.1:+62526122 | MS.gene30033:CDS |
| GCAACAGAAATCGATGATCC+AGG | 0.552834 | 7.1:-62526072 | None:intergenic |
| AGATGAAGTTGTGAATATGC+TGG | 0.555808 | 7.1:+62528682 | MS.gene30033:CDS |
| AGTGACGAGGAGTTAAGGGT+TGG | 0.559394 | 7.1:+62528527 | MS.gene30033:CDS |
| GAGAGCGTGCGAAATGGGAA+TGG | 0.559837 | 7.1:+62529041 | MS.gene30033:CDS |
| CAGATTTGATGAGAATGACA+TGG | 0.560594 | 7.1:+62528430 | MS.gene30033:CDS |
| CATCATGAGGTCCAAAATCA+GGG | 0.563023 | 7.1:-62526101 | None:intergenic |
| ATTAGTTGATGAGAGTTACA+TGG | 0.564361 | 7.1:+62528592 | MS.gene30033:CDS |
| TTCAGGGATCTGGATGTACC+AGG | 0.570204 | 7.1:+62529172 | MS.gene30033:intron |
| ATTTAAGTTTATCAAGTCTG+GGG | 0.591494 | 7.1:-62528385 | None:intergenic |
| GATTTCCGAAGGTACTTGCA+AGG | 0.595602 | 7.1:+62528714 | MS.gene30033:CDS |
| TTTAAGTTTATCAAGTCTGG+GGG | 0.597237 | 7.1:-62528384 | None:intergenic |
| GTGAATATGCTGGAATCAGA+TGG | 0.612073 | 7.1:+62528692 | MS.gene30033:CDS |
| ACACTTAGACATATGTCACC+TGG | 0.612546 | 7.1:+62526054 | MS.gene30033:CDS |
| AAACCTTCTGCAGAAAGACC+TGG | 0.615596 | 7.1:-62529190 | None:intergenic |
| GCTCCTCCTGAAGTCTGCTG+TGG | 0.628242 | 7.1:-62526027 | None:intergenic |
| GAAAATTGGAGTTGAGACAT+GGG | 0.629514 | 7.1:+62528955 | MS.gene30033:CDS |
| GGAATCAGATGGATTTCCGA+AGG | 0.635324 | 7.1:+62528703 | MS.gene30033:CDS |
| TCAATAAGCTCCATACTACC+AGG | 0.636229 | 7.1:-62528356 | None:intergenic |
| TATGCTAGAGAAATCCTGAA+AGG | 0.639851 | 7.1:+62528830 | MS.gene30033:CDS |
| AGTGTACTAAAAGTTGTACC+TGG | 0.641842 | 7.1:+62528338 | MS.gene30033:CDS |
| GCTAGAGAAATCCTGAAAGG+AGG | 0.643390 | 7.1:+62528833 | MS.gene30033:CDS |
| TGTGGAAGTTGGATGAGAAG+CGG | 0.646023 | 7.1:+62528795 | MS.gene30033:CDS |
| GAACCACAGCAGACTTCAGG+AGG | 0.646781 | 7.1:+62526024 | MS.gene30033:CDS |
| ATTGGATCATCATTAGCCGA+CGG | 0.649023 | 7.1:-62529241 | None:intergenic |
| GATTCTGATTGATTTGCTGG+TGG | 0.656551 | 7.1:-62528260 | None:intergenic |
| ACAGCAGACTTCAGGAGGAG+CGG | 0.657032 | 7.1:+62526029 | MS.gene30033:CDS |
| ATTGCATGCAAAGTGGTGTG+TGG | 0.666073 | 7.1:+62528777 | MS.gene30033:CDS |
| CCTTCCATAAGATCAAAAGT+GGG | 0.666519 | 7.1:-62528917 | None:intergenic |
| TGGAAGGCAATGAAGAGACA+CGG | 0.669323 | 7.1:-62528988 | None:intergenic |
| GAAAATGATTGCATGCAAAG+TGG | 0.671448 | 7.1:+62528770 | MS.gene30033:CDS |
| AGGCAATGAAGAGACACGGA+AGG | 0.679043 | 7.1:-62528984 | None:intergenic |
| TTGCTTGCATGTGTATGCCA+AGG | 0.692578 | 7.1:+62528739 | MS.gene30033:CDS |
| CACTCGAAAGACACAACCGT+CGG | 0.705980 | 7.1:+62529225 | MS.gene30033:CDS |
| AGAATTATGAGATCATCATG+AGG | 0.708784 | 7.1:-62526114 | None:intergenic |
| AAATATTCAAGCTAGTGACG+AGG | 0.720450 | 7.1:+62528514 | MS.gene30033:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATGACCATAATATT+AGG | + | chr7.1:62528002-62528021 | MS.gene30033:intron | 15.0% |
| !! | TCAAAAAAACAATATAAAGA+TGG | - | chr7.1:62526348-62526367 | None:intergenic | 15.0% |
| !! | AAAATCCATCTCAATTTATT+TGG | + | chr7.1:62526525-62526544 | MS.gene30033:intron | 20.0% |
| !! | AAAATTATAGTACCCAAAAA+TGG | + | chr7.1:62526693-62526712 | MS.gene30033:intron | 20.0% |
| !! | AATAGCATTATGATTTCTTA+TGG | - | chr7.1:62527078-62527097 | None:intergenic | 20.0% |
| !! | ATTAGACATATCAAAAGAAA+CGG | - | chr7.1:62527046-62527065 | None:intergenic | 20.0% |
| !! | TAACTGAAATCCTAATATTA+TGG | - | chr7.1:62528015-62528034 | None:intergenic | 20.0% |
| !! | TCTAAGTAACTATTGTAATT+AGG | - | chr7.1:62528039-62528058 | None:intergenic | 20.0% |
| !!! | AATTTAAGTTTATCAAGTCT+GGG | - | chr7.1:62528389-62528408 | None:intergenic | 20.0% |
| !!! | ATGAGTTTTTGACTTATTTA+AGG | + | chr7.1:62526391-62526410 | MS.gene30033:intron | 20.0% |
| !!! | TTCTAATTTTGAATGTTTCA+GGG | + | chr7.1:62529156-62529175 | MS.gene30033:intron | 20.0% |
| !!! | TTTCTAATTTTGAATGTTTC+AGG | + | chr7.1:62529155-62529174 | MS.gene30033:intron | 20.0% |
| !!! | TTTGGGTACTATAATTTTAT+TGG | - | chr7.1:62526691-62526710 | None:intergenic | 20.0% |
| ! | AACAACCAAATAAATTGAGA+TGG | - | chr7.1:62526533-62526552 | None:intergenic | 25.0% |
| ! | ACATGAAAATGTGTAGAAAA+GGG | - | chr7.1:62527441-62527460 | None:intergenic | 25.0% |
| ! | AGAAATCATAATGCTATTCT+TGG | + | chr7.1:62527080-62527099 | MS.gene30033:intron | 25.0% |
| ! | ATAATATCTGAACCTGATAT+AGG | - | chr7.1:62529080-62529099 | None:intergenic | 25.0% |
| ! | GAACACATAAATAGTAAGAA+AGG | - | chr7.1:62527899-62527918 | None:intergenic | 25.0% |
| ! | TAATATCTGAACCTGATATA+GGG | - | chr7.1:62529079-62529098 | None:intergenic | 25.0% |
| ! | TTGCTTTAATTACCGTAATT+AGG | + | chr7.1:62526303-62526322 | MS.gene30033:intron | 25.0% |
| !! | AACTTTTCAATATAACCTAG+GGG | - | chr7.1:62527405-62527424 | None:intergenic | 25.0% |
| !! | AGTATTGTGATTCAGTATTT+TGG | - | chr7.1:62527303-62527322 | None:intergenic | 25.0% |
| !! | ATCATTTTCTTTTACTTCCT+TGG | - | chr7.1:62528759-62528778 | None:intergenic | 25.0% |
| !! | ATTTAAGTTTATCAAGTCTG+GGG | - | chr7.1:62528388-62528407 | None:intergenic | 25.0% |
| !! | CAACTTTTCAATATAACCTA+GGG | - | chr7.1:62527406-62527425 | None:intergenic | 25.0% |
| !! | CAATTTAAGTTTATCAAGTC+TGG | - | chr7.1:62528390-62528409 | None:intergenic | 25.0% |
| !! | GAGAAAGTTAGAGAATTTTA+TGG | + | chr7.1:62528859-62528878 | MS.gene30033:CDS | 25.0% |
| !! | GAGACATTTTTATATCGAAA+AGG | - | chr7.1:62526955-62526974 | None:intergenic | 25.0% |
| !! | TAGAGAATTTTATGGAAGAA+TGG | + | chr7.1:62528867-62528886 | MS.gene30033:CDS | 25.0% |
| !! | TTATGTTATTTGTAACTCCT+TGG | + | chr7.1:62526196-62526215 | MS.gene30033:intron | 25.0% |
| !!! | ATTTGATTTTATGAAGCTAG+TGG | + | chr7.1:62526456-62526475 | MS.gene30033:intron | 25.0% |
| !!! | CATATTTTAACAGAAGATCT+TGG | - | chr7.1:62527143-62527162 | None:intergenic | 25.0% |
| !!! | CGTAATTTTAATTTGACTCT+TGG | + | chr7.1:62527630-62527649 | MS.gene30033:intron | 25.0% |
| !!! | GCTTTTTGGATATTTTAAAG+TGG | - | chr7.1:62526749-62526768 | None:intergenic | 25.0% |
| ACATATGCTATGAAGTTTGT+TGG | + | chr7.1:62528212-62528231 | MS.gene30033:CDS | 30.0% | |
| ACATGGTTTCTTTCTATTTC+AGG | + | chr7.1:62528135-62528154 | MS.gene30033:intron | 30.0% | |
| ACCTTTCATTCAAAACATCT+GGG | - | chr7.1:62526161-62526180 | None:intergenic | 30.0% | |
| AGAAATGTAGAACACAGAAA+TGG | - | chr7.1:62527859-62527878 | None:intergenic | 30.0% | |
| AGAATTATGAGATCATCATG+AGG | - | chr7.1:62526117-62526136 | None:intergenic | 30.0% | |
| ATAAGTAAGGAAAGAGAGAA+AGG | - | chr7.1:62528112-62528131 | None:intergenic | 30.0% | |
| ATTCTTCACTTAGCTTATCA+TGG | + | chr7.1:62527743-62527762 | MS.gene30033:intron | 30.0% | |
| ATTGCTGAATTAAACCATTG+AGG | - | chr7.1:62526573-62526592 | None:intergenic | 30.0% | |
| ATTTGTAACTCCTTGGAAAA+AGG | + | chr7.1:62526203-62526222 | MS.gene30033:intron | 30.0% | |
| CCTAGGTTATATTGAAAAGT+TGG | + | chr7.1:62527404-62527423 | MS.gene30033:intron | 30.0% | |
| CTAGATCAGGATTATATAAC+TGG | + | chr7.1:62528477-62528496 | MS.gene30033:CDS | 30.0% | |
| CTCAAGGATAGTTATGAAAT+TGG | + | chr7.1:62526861-62526880 | MS.gene30033:intron | 30.0% | |
| CTTATTTAAGGAACTCTCAA+TGG | + | chr7.1:62526403-62526422 | MS.gene30033:intron | 30.0% | |
| CTTTAATTACCGTAATTAGG+TGG | + | chr7.1:62526306-62526325 | MS.gene30033:intron | 30.0% | |
| CTTTCCTTACTTATGTTACA+TGG | + | chr7.1:62528118-62528137 | MS.gene30033:intron | 30.0% | |
| GAAACCATGTAACATAAGTA+AGG | - | chr7.1:62528125-62528144 | None:intergenic | 30.0% | |
| GACATGAAAATGTGTAGAAA+AGG | - | chr7.1:62527442-62527461 | None:intergenic | 30.0% | |
| GGATTTCAAACATTGAAAAG+AGG | - | chr7.1:62527791-62527810 | None:intergenic | 30.0% | |
| TACCTTTCATTCAAAACATC+TGG | - | chr7.1:62526162-62526181 | None:intergenic | 30.0% | |
| TGAATTAAACCATTGAGGTT+TGG | - | chr7.1:62526568-62526587 | None:intergenic | 30.0% | |
| TTGTCAAGATTCAATTAGTG+TGG | - | chr7.1:62526891-62526910 | None:intergenic | 30.0% | |
| ! | AAAATTCAGTGTTGAATGAC+TGG | + | chr7.1:62528639-62528658 | MS.gene30033:CDS | 30.0% |
| ! | AATAGTCATACACAGCTTTT+TGG | - | chr7.1:62526763-62526782 | None:intergenic | 30.0% |
| ! | AGAATTTTATGGAAGAATGG+AGG | + | chr7.1:62528870-62528889 | MS.gene30033:CDS | 30.0% |
| ! | ATACACCAAAACCTTTTCAT+AGG | + | chr7.1:62526789-62526808 | MS.gene30033:intron | 30.0% |
| ! | ATGGATTTTCATTTCATCAG+AGG | - | chr7.1:62526514-62526533 | None:intergenic | 30.0% |
| ! | CACATTTTCATGTCTTTTCT+TGG | + | chr7.1:62527448-62527467 | MS.gene30033:intron | 30.0% |
| ! | CCAACTTTTCAATATAACCT+AGG | - | chr7.1:62527407-62527426 | None:intergenic | 30.0% |
| ! | GTTGTTACTTAGGATAAAAG+TGG | - | chr7.1:62527112-62527131 | None:intergenic | 30.0% |
| ! | TGATACTTTGTTTGAGAGAT+TGG | + | chr7.1:62527173-62527192 | MS.gene30033:intron | 30.0% |
| ! | TTTAAGTTTATCAAGTCTGG+GGG | - | chr7.1:62528387-62528406 | None:intergenic | 30.0% |
| !! | AGTTTTTCAACAAGTCTTCT+AGG | + | chr7.1:62526929-62526948 | MS.gene30033:intron | 30.0% |
| !! | ATTAGTTGATGAGAGTTACA+TGG | + | chr7.1:62528592-62528611 | MS.gene30033:CDS | 30.0% |
| !! | GGTAGAATTTGTTGTTACTT+AGG | - | chr7.1:62527122-62527141 | None:intergenic | 30.0% |
| AAAAGTTGTACCTGGTAGTA+TGG | + | chr7.1:62528346-62528365 | MS.gene30033:CDS | 35.0% | |
| AAACATTGAAAAGAGGAGAG+TGG | - | chr7.1:62527784-62527803 | None:intergenic | 35.0% | |
| AAATATTCAAGCTAGTGACG+AGG | + | chr7.1:62528514-62528533 | MS.gene30033:CDS | 35.0% | |
| AAATGTGTAGAAAAGGGACT+TGG | - | chr7.1:62527435-62527454 | None:intergenic | 35.0% | |
| AATGGCTTAGTGAAGACATT+TGG | + | chr7.1:62526421-62526440 | MS.gene30033:intron | 35.0% | |
| ACCTTCCATAAGATCAAAAG+TGG | - | chr7.1:62528921-62528940 | None:intergenic | 35.0% | |
| AGAAAATTGGAGTTGAGACA+TGG | + | chr7.1:62528954-62528973 | MS.gene30033:CDS | 35.0% | |
| AGATGAAGTTGTGAATATGC+TGG | + | chr7.1:62528682-62528701 | MS.gene30033:CDS | 35.0% | |
| AGTGTACTAAAAGTTGTACC+TGG | + | chr7.1:62528338-62528357 | MS.gene30033:CDS | 35.0% | |
| ATTAAGGGAGACCTATGAAA+AGG | - | chr7.1:62526803-62526822 | None:intergenic | 35.0% | |
| CAGATTTGATGAGAATGACA+TGG | + | chr7.1:62528430-62528449 | MS.gene30033:CDS | 35.0% | |
| CCACCACATATGAACTTATA+TGG | - | chr7.1:62526604-62526623 | None:intergenic | 35.0% | |
| CCATATAAGTTCATATGTGG+TGG | + | chr7.1:62526601-62526620 | MS.gene30033:intron | 35.0% | |
| CCTTCCATAAGATCAAAAGT+GGG | - | chr7.1:62528920-62528939 | None:intergenic | 35.0% | |
| CTTATCATGGTCTATGAGTT+TGG | + | chr7.1:62527756-62527775 | MS.gene30033:intron | 35.0% | |
| CTTGGAAAAAGGAAGGAAAT+GGG | + | chr7.1:62526214-62526233 | MS.gene30033:intron | 35.0% | |
| GAAAATGATTGCATGCAAAG+TGG | + | chr7.1:62528770-62528789 | MS.gene30033:CDS | 35.0% | |
| GAAAATTGGAGTTGAGACAT+GGG | + | chr7.1:62528955-62528974 | MS.gene30033:CDS | 35.0% | |
| GAGCCATATAAGTTCATATG+TGG | + | chr7.1:62526598-62526617 | MS.gene30033:intron | 35.0% | |
| GGTTTCTTTCTATTTCAGGA+TGG | + | chr7.1:62528139-62528158 | MS.gene30033:intron | 35.0% | |
| GTTTAAACTATGTCTGACGA+GGG | - | chr7.1:62527611-62527630 | None:intergenic | 35.0% | |
| TAAGTGAAGAATCACCACAA+AGG | - | chr7.1:62527735-62527754 | None:intergenic | 35.0% | |
| TATGCTAGAGAAATCCTGAA+AGG | + | chr7.1:62528830-62528849 | MS.gene30033:CDS | 35.0% | |
| TGGTACAAGCAAAACAGAAT+TGG | - | chr7.1:62528243-62528262 | None:intergenic | 35.0% | |
| ! | AACTCATATGCTCTAGCTTA+AGG | - | chr7.1:62526378-62526397 | None:intergenic | 35.0% |
| ! | ACTCATATGCTCTAGCTTAA+GGG | - | chr7.1:62526377-62526396 | None:intergenic | 35.0% |
| ! | GAGTTTGTTCCACCTAATTA+CGG | - | chr7.1:62526318-62526337 | None:intergenic | 35.0% |
| ! | TATTTCAGGATGGTCTTAAG+AGG | + | chr7.1:62528149-62528168 | MS.gene30033:intron | 35.0% |
| ! | TTTTGAATGTTTCAGGGATC+TGG | + | chr7.1:62529162-62529181 | MS.gene30033:intron | 35.0% |
| ! | TTTTGATCTTATGGAAGGTG+AGG | + | chr7.1:62528922-62528941 | MS.gene30033:CDS | 35.0% |
| !! | CACAGAAATGGATTAGAAAC+TGG | - | chr7.1:62527847-62527866 | None:intergenic | 35.0% |
| !! | GAGGTATTGACAGAGAAAAT+TGG | + | chr7.1:62528941-62528960 | MS.gene30033:CDS | 35.0% |
| !! | TACGATTCTGATTGATTTGC+TGG | - | chr7.1:62528266-62528285 | None:intergenic | 35.0% |
| !! | TCCCAGATGTTTTGAATGAA+AGG | + | chr7.1:62526157-62526176 | MS.gene30033:CDS | 35.0% |
| !! | TGATCTCATAATTCTAGAGC+TGG | + | chr7.1:62526122-62526141 | MS.gene30033:CDS | 35.0% |
| !!! | TGGATATTTTAAAGTGGCCT+GGG | - | chr7.1:62526743-62526762 | None:intergenic | 35.0% |
| !!! | TTGGATATTTTAAAGTGGCC+TGG | - | chr7.1:62526744-62526763 | None:intergenic | 35.0% |
| AAAAATGTCTCCTCCTGACT+TGG | + | chr7.1:62526964-62526983 | MS.gene30033:intron | 40.0% | |
| AAAGGTTCCTCATACCTTTG+TGG | + | chr7.1:62527718-62527737 | MS.gene30033:intron | 40.0% | |
| AAAGTGGGATGCATTTCATC+TGG | - | chr7.1:62528905-62528924 | None:intergenic | 40.0% | |
| AAGATCTACAGCCCTATATC+AGG | + | chr7.1:62529065-62529084 | MS.gene30033:CDS | 40.0% | |
| AATGACATTAGAAAGCCGAG+TGG | + | chr7.1:62527256-62527275 | MS.gene30033:intron | 40.0% | |
| ACACTTAGACATATGTCACC+TGG | + | chr7.1:62526054-62526073 | MS.gene30033:CDS | 40.0% | |
| ACCTCTAAGCAACAAAGGAA+GGG | - | chr7.1:62527564-62527583 | None:intergenic | 40.0% | |
| ACTTGGCAAAAATTTGGCAC+TGG | + | chr7.1:62526981-62527000 | MS.gene30033:intron | 40.0% | |
| ACTTTCTCTTACCTCCTTTC+AGG | - | chr7.1:62528847-62528866 | None:intergenic | 40.0% | |
| AGGTGTCTTCATGCATTTGA+AGG | + | chr7.1:62527528-62527547 | MS.gene30033:intron | 40.0% | |
| ATTGGATCATCATTAGCCGA+CGG | - | chr7.1:62529244-62529263 | None:intergenic | 40.0% | |
| ATTGTCTACACCAACTTCCT+AGG | - | chr7.1:62527344-62527363 | None:intergenic | 40.0% | |
| CATCATGAGGTCCAAAATCA+GGG | - | chr7.1:62526104-62526123 | None:intergenic | 40.0% | |
| CCTTGGAAAAAGGAAGGAAA+TGG | + | chr7.1:62526213-62526232 | MS.gene30033:intron | 40.0% | |
| CGTTTAAACTATGTCTGACG+AGG | - | chr7.1:62527612-62527631 | None:intergenic | 40.0% | |
| CTGTGGAGATCAATGGATAT+TGG | + | chr7.1:62528567-62528586 | MS.gene30033:CDS | 40.0% | |
| GAAACATCTCCAAACCTCAA+TGG | + | chr7.1:62526556-62526575 | MS.gene30033:intron | 40.0% | |
| GAACTTGTAGGAGTTTCAAG+AGG | + | chr7.1:62527003-62527022 | MS.gene30033:intron | 40.0% | |
| GAAGACACCTTGGAAAACTT+GGG | - | chr7.1:62527518-62527537 | None:intergenic | 40.0% | |
| GAGAATCACGAATCTAGATC+AGG | + | chr7.1:62528464-62528483 | MS.gene30033:CDS | 40.0% | |
| GAGTTACATGGACATGATTC+TGG | + | chr7.1:62528604-62528623 | MS.gene30033:CDS | 40.0% | |
| GTAACTCCTTGGAAAAAGGA+AGG | + | chr7.1:62526207-62526226 | MS.gene30033:intron | 40.0% | |
| GTGAATATGCTGGAATCAGA+TGG | + | chr7.1:62528692-62528711 | MS.gene30033:CDS | 40.0% | |
| TAAGGAAAGAGAGAAAGGCA+GGG | - | chr7.1:62528107-62528126 | None:intergenic | 40.0% | |
| TCAAATGCATGAAGACACCT+TGG | - | chr7.1:62527528-62527547 | None:intergenic | 40.0% | |
| TCAATAAGCTCCATACTACC+AGG | - | chr7.1:62528359-62528378 | None:intergenic | 40.0% | |
| TCATCATGAGGTCCAAAATC+AGG | - | chr7.1:62526105-62526124 | None:intergenic | 40.0% | |
| TGAAGACACCTTGGAAAACT+TGG | - | chr7.1:62527519-62527538 | None:intergenic | 40.0% | |
| TGGTAGTATGGAGCTTATTG+AGG | + | chr7.1:62528358-62528377 | MS.gene30033:CDS | 40.0% | |
| TTGGAAAACTTGGGAAAGGA+AGG | - | chr7.1:62527509-62527528 | None:intergenic | 40.0% | |
| TTGTCTACACCAACTTCCTA+GGG | - | chr7.1:62527343-62527362 | None:intergenic | 40.0% | |
| ! | AATTTGGCACTGGAACTTGT+AGG | + | chr7.1:62526991-62527010 | MS.gene30033:intron | 40.0% |
| ! | ACTAGTTTGAAAACTCCCCT+AGG | + | chr7.1:62527387-62527406 | MS.gene30033:intron | 40.0% |
| ! | AGAATCACCACAAAGGTATG+AGG | - | chr7.1:62527728-62527747 | None:intergenic | 40.0% |
| ! | CAAATTTTTGCCAAGTCAGG+AGG | - | chr7.1:62526977-62526996 | None:intergenic | 40.0% |
| ! | CCAAAGTCGACTCTTATCAA+AGG | + | chr7.1:62527700-62527719 | MS.gene30033:intron | 40.0% |
| ! | CCATTTCCTTCCTTTTTCCA+AGG | - | chr7.1:62526216-62526235 | None:intergenic | 40.0% |
| ! | CCTTTGATAAGAGTCGACTT+TGG | - | chr7.1:62527703-62527722 | None:intergenic | 40.0% |
| ! | GGAGACCTATGAAAAGGTTT+TGG | - | chr7.1:62526797-62526816 | None:intergenic | 40.0% |
| ! | GTTGCATATCACCCTGATTT+TGG | + | chr7.1:62526090-62526109 | MS.gene30033:CDS | 40.0% |
| ! | TGCCAAATTTTTGCCAAGTC+AGG | - | chr7.1:62526980-62526999 | None:intergenic | 40.0% |
| ! | TTCCTTTCCCAAGTTTTCCA+AGG | + | chr7.1:62527508-62527527 | MS.gene30033:intron | 40.0% |
| !! | CCCACTTTTGATCTTATGGA+AGG | + | chr7.1:62528917-62528936 | MS.gene30033:CDS | 40.0% |
| !! | CTCCTGACTTGGCAAAAATT+TGG | + | chr7.1:62526975-62526994 | MS.gene30033:intron | 40.0% |
| !! | GATTCTGATTGATTTGCTGG+TGG | - | chr7.1:62528263-62528282 | None:intergenic | 40.0% |
| !! | GCATCCCACTTTTGATCTTA+TGG | + | chr7.1:62528913-62528932 | MS.gene30033:CDS | 40.0% |
| !!! | GAGAGCATTGTGCATCTTTT+TGG | + | chr7.1:62527663-62527682 | MS.gene30033:intron | 40.0% |
| AAACCTTCTGCAGAAAGACC+TGG | - | chr7.1:62529193-62529212 | None:intergenic | 45.0% | |
| AACTTGTCAAGCTATGCCCT+AGG | + | chr7.1:62527324-62527343 | MS.gene30033:intron | 45.0% | |
| AAGCTAGTGACGAGGAGTTA+AGG | + | chr7.1:62528522-62528541 | MS.gene30033:CDS | 45.0% | |
| AGCTAGTGACGAGGAGTTAA+GGG | + | chr7.1:62528523-62528542 | MS.gene30033:CDS | 45.0% | |
| AGGTGACCTCTAAGCAACAA+AGG | - | chr7.1:62527569-62527588 | None:intergenic | 45.0% | |
| ATTGCATGCAAAGTGGTGTG+TGG | + | chr7.1:62528777-62528796 | MS.gene30033:CDS | 45.0% | |
| CAAAGAACTGCATCTTCGTC+AGG | - | chr7.1:62528179-62528198 | None:intergenic | 45.0% | |
| CAATGCCTTGCAAGTACCTT+CGG | - | chr7.1:62528722-62528741 | None:intergenic | 45.0% | |
| CACCTTGGAAAACTTGGGAA+AGG | - | chr7.1:62527513-62527532 | None:intergenic | 45.0% | |
| CTTTCAGCTGTGGAGATCAA+TGG | + | chr7.1:62528560-62528579 | MS.gene30033:CDS | 45.0% | |
| GACCTCTAAGCAACAAAGGA+AGG | - | chr7.1:62527565-62527584 | None:intergenic | 45.0% | |
| GCAACAGAAATCGATGATCC+AGG | - | chr7.1:62526075-62526094 | None:intergenic | 45.0% | |
| GCATTCTGTTGCTCTTCTCA+AGG | + | chr7.1:62526845-62526864 | MS.gene30033:intron | 45.0% | |
| GCTAGAGAAATCCTGAAAGG+AGG | + | chr7.1:62528833-62528852 | MS.gene30033:CDS | 45.0% | |
| GGGCAAAGTCTAATACTGAC+AGG | - | chr7.1:62526723-62526742 | None:intergenic | 45.0% | |
| GTAAGGAAAGAGAGAAAGGC+AGG | - | chr7.1:62528108-62528127 | None:intergenic | 45.0% | |
| GTCAGTATTAGACTTTGCCC+AGG | + | chr7.1:62526723-62526742 | MS.gene30033:intron | 45.0% | |
| TCTAAGTGAAGCTGACCACT+CGG | - | chr7.1:62527274-62527293 | None:intergenic | 45.0% | |
| TCTTCATGTCCTCCTTGAGT+TGG | + | chr7.1:62527473-62527492 | MS.gene30033:intron | 45.0% | |
| TGGAAGGCAATGAAGAGACA+CGG | - | chr7.1:62528991-62529010 | None:intergenic | 45.0% | |
| TGTGGAAGTTGGATGAGAAG+CGG | + | chr7.1:62528795-62528814 | MS.gene30033:CDS | 45.0% | |
| TTGCTTGCATGTGTATGCCA+AGG | + | chr7.1:62528739-62528758 | MS.gene30033:CDS | 45.0% | |
| ! | GGAATCAGATGGATTTCCGA+AGG | + | chr7.1:62528703-62528722 | MS.gene30033:CDS | 45.0% |
| ! | TTTCAGAGAGCGTGCGAAAT+GGG | + | chr7.1:62529036-62529055 | MS.gene30033:CDS | 45.0% |
| !! | ACTGACAGGTGAGCCATTTT+TGG | - | chr7.1:62526709-62526728 | None:intergenic | 45.0% |
| !! | GATTTCCGAAGGTACTTGCA+AGG | + | chr7.1:62528714-62528733 | MS.gene30033:CDS | 45.0% |
| !! | TTTTCAGAGAGCGTGCGAAA+TGG | + | chr7.1:62529035-62529054 | MS.gene30033:CDS | 45.0% |
| !!! | CTGACAGGTGAGCCATTTTT+GGG | - | chr7.1:62526708-62526727 | None:intergenic | 45.0% |
| !! | CTAATTAAAAAATATATTAA+GGG | - | chr7.1:62526818-62526837 | None:intergenic | 5.0% |
| !! | TCTAATTAAAAAATATATTA+AGG | - | chr7.1:62526819-62526838 | None:intergenic | 5.0% |
| !!! | AAAATTTTAATTAAAAGAAA+TGG | - | chr7.1:62527812-62527831 | None:intergenic | 5.0% |
| AGGCAATGAAGAGACACGGA+AGG | - | chr7.1:62528987-62529006 | None:intergenic | 50.0% | |
| AGGGCAAAGAGAGCCTTTGA+GGG | - | chr7.1:62527592-62527611 | None:intergenic | 50.0% | |
| AGTGACGAGGAGTTAAGGGT+TGG | + | chr7.1:62528527-62528546 | MS.gene30033:CDS | 50.0% | |
| ATTGCAGGCTCTTTCAGCTG+TGG | + | chr7.1:62528550-62528569 | MS.gene30033:CDS | 50.0% | |
| CAAGCTATGCCCTAGGAAGT+TGG | + | chr7.1:62527331-62527350 | MS.gene30033:intron | 50.0% | |
| CACTCGAAAGACACAACCGT+CGG | + | chr7.1:62529225-62529244 | MS.gene30033:CDS | 50.0% | |
| CTACATGCACCAACTCAAGG+AGG | - | chr7.1:62527485-62527504 | None:intergenic | 50.0% | |
| GCAAAGTGGTGTGTGGAAGT+TGG | + | chr7.1:62528784-62528803 | MS.gene30033:CDS | 50.0% | |
| GGACTACATGCACCAACTCA+AGG | - | chr7.1:62527488-62527507 | None:intergenic | 50.0% | |
| GGAGTTAAGGGTTGGATTGC+AGG | + | chr7.1:62528535-62528554 | MS.gene30033:CDS | 50.0% | |
| GTACCAGGTCTTTCTGCAGA+AGG | + | chr7.1:62529187-62529206 | MS.gene30033:CDS | 50.0% | |
| GTGGAAGTTGGATGAGAAGC+GGG | + | chr7.1:62528796-62528815 | MS.gene30033:CDS | 50.0% | |
| TTAGAGGTCACCTCCCTCAA+AGG | + | chr7.1:62527576-62527595 | MS.gene30033:intron | 50.0% | |
| TTCAGGGATCTGGATGTACC+AGG | + | chr7.1:62529172-62529191 | MS.gene30033:intron | 50.0% | |
| ! | CGCACGCTCTCTGAAAAGAA+TGG | - | chr7.1:62529032-62529051 | None:intergenic | 50.0% |
| ! | GCCCTTCCTTTGTTGCTTAG+AGG | + | chr7.1:62527560-62527579 | MS.gene30033:intron | 50.0% |
| !! | AGAATGGAGAAGCGTTCAGC+TGG | - | chr7.1:62529016-62529035 | None:intergenic | 50.0% |
| AAGCGTTCAGCTGGAGTGGA+AGG | - | chr7.1:62529007-62529026 | None:intergenic | 55.0% | |
| ACAGCAGACTTCAGGAGGAG+CGG | + | chr7.1:62526029-62526048 | MS.gene30033:CDS | 55.0% | |
| CCAGAACCACAGCAGACTTC+AGG | + | chr7.1:62526021-62526040 | MS.gene30033:CDS | 55.0% | |
| CCTGAAGTCTGCTGTGGTTC+TGG | - | chr7.1:62526024-62526043 | None:intergenic | 55.0% | |
| GAACCACAGCAGACTTCAGG+AGG | + | chr7.1:62526024-62526043 | MS.gene30033:CDS | 55.0% | |
| GAGGGCAAAGAGAGCCTTTG+AGG | - | chr7.1:62527593-62527612 | None:intergenic | 55.0% | |
| ! | GAGAGCGTGCGAAATGGGAA+TGG | + | chr7.1:62529041-62529060 | MS.gene30033:CDS | 55.0% |
| ! | GCAAAGAGAGCCTTTGAGGG+AGG | - | chr7.1:62527589-62527608 | None:intergenic | 55.0% |
| GCTCCTCCTGAAGTCTGCTG+TGG | - | chr7.1:62526030-62526049 | None:intergenic | 60.0% | |
| !! | GGAGAAGCGTTCAGCTGGAG+TGG | - | chr7.1:62529011-62529030 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 62526015 | 62529279 | 62526015 | ID=MS.gene30033 |
| chr7.1 | mRNA | 62526015 | 62529279 | 62526015 | ID=MS.gene30033.t1;Parent=MS.gene30033 |
| chr7.1 | exon | 62526015 | 62526178 | 62526015 | ID=MS.gene30033.t1.exon1;Parent=MS.gene30033.t1 |
| chr7.1 | CDS | 62526015 | 62526178 | 62526015 | ID=cds.MS.gene30033.t1;Parent=MS.gene30033.t1 |
| chr7.1 | exon | 62528157 | 62529086 | 62528157 | ID=MS.gene30033.t1.exon2;Parent=MS.gene30033.t1 |
| chr7.1 | CDS | 62528157 | 62529086 | 62528157 | ID=cds.MS.gene30033.t1;Parent=MS.gene30033.t1 |
| chr7.1 | exon | 62529177 | 62529279 | 62529177 | ID=MS.gene30033.t1.exon3;Parent=MS.gene30033.t1 |
| chr7.1 | CDS | 62529177 | 62529279 | 62529177 | ID=cds.MS.gene30033.t1;Parent=MS.gene30033.t1 |
| Gene Sequence |
| Protein sequence |
