Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054945.t1 | XP_003602595.1 | 99.4 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 9.40E-207 | 729.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054945.t1 | Q6T1F5 | 39.3 | 351 | 206 | 5 | 12 | 358 | 18 | 365 | 4.5e-64 | 246.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054945.t1 | B7FIM0 | 99.4 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 6.8e-207 | 729.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049294 | MS.gene054945 | 0.898884 | 3.42E-77 | -1.69E-46 |
MS.gene054945 | MS.gene06416 | 0.810828 | 9.49E-51 | -1.69E-46 |
MS.gene054945 | MS.gene06417 | 0.999618 | 0.00E+00 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054945.t1 | MTR_3g096050 | 99.441 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 0.0 | 741 |
MS.gene054945.t1 | MTR_3g096070 | 82.402 | 358 | 40 | 1 | 1 | 358 | 1 | 335 | 0.0 | 600 |
MS.gene054945.t1 | MTR_3g096050 | 98.473 | 262 | 4 | 0 | 1 | 262 | 1 | 262 | 0.0 | 533 |
MS.gene054945.t1 | MTR_2g072790 | 58.790 | 347 | 142 | 1 | 12 | 358 | 9 | 354 | 5.99e-159 | 449 |
MS.gene054945.t1 | MTR_3g092900 | 37.429 | 350 | 210 | 6 | 14 | 358 | 18 | 363 | 2.11e-71 | 227 |
MS.gene054945.t1 | MTR_5g098170 | 36.286 | 350 | 215 | 5 | 14 | 358 | 17 | 363 | 2.71e-68 | 219 |
MS.gene054945.t1 | MTR_0591s0010 | 36.207 | 348 | 207 | 7 | 20 | 358 | 36 | 377 | 8.46e-67 | 215 |
MS.gene054945.t1 | MTR_8g068750 | 34.203 | 345 | 218 | 5 | 20 | 358 | 36 | 377 | 4.96e-66 | 213 |
MS.gene054945.t1 | MTR_7g118320 | 33.913 | 345 | 219 | 4 | 20 | 358 | 21 | 362 | 5.62e-66 | 213 |
MS.gene054945.t1 | MTR_8g068690 | 34.557 | 327 | 205 | 5 | 20 | 340 | 35 | 358 | 4.10e-63 | 206 |
MS.gene054945.t1 | MTR_1g096310 | 36.267 | 375 | 210 | 11 | 2 | 358 | 9 | 372 | 9.54e-63 | 205 |
MS.gene054945.t1 | MTR_8g068870 | 33.616 | 354 | 220 | 7 | 14 | 358 | 16 | 363 | 1.11e-62 | 204 |
MS.gene054945.t1 | MTR_7g118300 | 33.523 | 352 | 228 | 4 | 10 | 358 | 27 | 375 | 1.47e-62 | 204 |
MS.gene054945.t1 | MTR_7g012020 | 36.314 | 369 | 216 | 9 | 2 | 358 | 8 | 369 | 2.01e-62 | 204 |
MS.gene054945.t1 | MTR_1g036490 | 35.457 | 361 | 217 | 9 | 9 | 358 | 15 | 370 | 9.50e-62 | 202 |
MS.gene054945.t1 | MTR_1g036460 | 35.734 | 361 | 216 | 9 | 9 | 358 | 15 | 370 | 3.98e-61 | 201 |
MS.gene054945.t1 | MTR_7g011900 | 36.658 | 371 | 212 | 11 | 2 | 358 | 9 | 370 | 1.30e-60 | 199 |
MS.gene054945.t1 | MTR_7g011990 | 36.261 | 353 | 203 | 8 | 17 | 358 | 26 | 367 | 4.98e-60 | 197 |
MS.gene054945.t1 | MTR_7g012070 | 34.316 | 373 | 223 | 9 | 2 | 358 | 9 | 375 | 4.56e-59 | 195 |
MS.gene054945.t1 | MTR_1g036510 | 35.556 | 360 | 218 | 8 | 9 | 358 | 29 | 384 | 1.22e-58 | 194 |
MS.gene054945.t1 | MTR_2g055940 | 35.246 | 366 | 219 | 10 | 3 | 358 | 6 | 363 | 2.48e-58 | 193 |
MS.gene054945.t1 | MTR_7g012040 | 35.310 | 371 | 216 | 12 | 2 | 358 | 8 | 368 | 3.28e-58 | 193 |
MS.gene054945.t1 | MTR_6g078850 | 34.024 | 338 | 212 | 5 | 14 | 343 | 34 | 368 | 9.79e-58 | 195 |
MS.gene054945.t1 | MTR_3g021430 | 38.567 | 293 | 167 | 6 | 73 | 358 | 71 | 357 | 1.49e-57 | 191 |
MS.gene054945.t1 | MTR_7g012090 | 37.288 | 295 | 170 | 6 | 73 | 358 | 87 | 375 | 5.08e-56 | 187 |
MS.gene054945.t1 | MTR_3g021440 | 37.543 | 293 | 170 | 6 | 73 | 358 | 84 | 370 | 6.23e-56 | 187 |
MS.gene054945.t1 | MTR_8g068730 | 32.424 | 330 | 182 | 7 | 20 | 343 | 36 | 330 | 7.62e-52 | 176 |
MS.gene054945.t1 | MTR_0017s0100 | 33.146 | 356 | 225 | 9 | 7 | 355 | 16 | 365 | 1.19e-51 | 176 |
MS.gene054945.t1 | MTR_8g068570 | 34.385 | 317 | 166 | 8 | 20 | 327 | 36 | 319 | 2.67e-51 | 173 |
MS.gene054945.t1 | MTR_8g024160 | 35.606 | 264 | 167 | 3 | 95 | 358 | 68 | 328 | 4.50e-51 | 173 |
MS.gene054945.t1 | MTR_4g038440 | 32.022 | 356 | 229 | 9 | 7 | 355 | 16 | 365 | 8.26e-48 | 166 |
MS.gene054945.t1 | MTR_0079s0070 | 32.523 | 329 | 212 | 8 | 31 | 355 | 9 | 331 | 5.71e-47 | 162 |
MS.gene054945.t1 | MTR_8g068690 | 34.387 | 253 | 158 | 4 | 20 | 266 | 35 | 285 | 1.71e-46 | 160 |
MS.gene054945.t1 | MTR_7g012020 | 36.431 | 269 | 161 | 6 | 2 | 262 | 8 | 274 | 9.82e-43 | 150 |
MS.gene054945.t1 | MTR_1g050220 | 31.138 | 334 | 170 | 8 | 17 | 342 | 6 | 287 | 6.12e-40 | 143 |
MS.gene054945.t1 | MTR_8g068600 | 34.783 | 230 | 142 | 4 | 37 | 260 | 27 | 254 | 2.16e-39 | 141 |
MS.gene054945.t1 | MTR_1g036510 | 35.249 | 261 | 159 | 6 | 9 | 261 | 29 | 287 | 1.42e-37 | 137 |
MS.gene054945.t1 | MTR_3g083620 | 29.787 | 329 | 214 | 11 | 32 | 354 | 40 | 357 | 7.53e-37 | 136 |
MS.gene054945.t1 | MTR_8g068740 | 31.660 | 259 | 137 | 6 | 20 | 272 | 36 | 260 | 2.17e-36 | 133 |
MS.gene054945.t1 | MTR_1g076940 | 27.976 | 336 | 222 | 10 | 31 | 355 | 32 | 358 | 1.51e-35 | 133 |
MS.gene054945.t1 | MTR_7g014570 | 28.732 | 355 | 234 | 11 | 10 | 357 | 9 | 351 | 1.69e-35 | 132 |
MS.gene054945.t1 | MTR_7g012020 | 34.286 | 245 | 151 | 6 | 2 | 238 | 8 | 250 | 2.29e-33 | 124 |
MS.gene054945.t1 | MTR_4g088340 | 27.647 | 340 | 221 | 9 | 29 | 357 | 7 | 332 | 1.07e-32 | 125 |
MS.gene054945.t1 | MTR_4g038440 | 32.432 | 259 | 165 | 6 | 7 | 259 | 16 | 270 | 1.31e-32 | 123 |
MS.gene054945.t1 | MTR_7g014510 | 29.573 | 328 | 210 | 10 | 31 | 350 | 32 | 346 | 1.78e-32 | 124 |
MS.gene054945.t1 | MTR_7g024520 | 28.024 | 339 | 214 | 11 | 29 | 356 | 29 | 348 | 3.42e-32 | 124 |
MS.gene054945.t1 | MTR_4g088345 | 28.955 | 335 | 223 | 9 | 29 | 357 | 30 | 355 | 5.73e-32 | 123 |
MS.gene054945.t1 | MTR_4g079160 | 29.143 | 350 | 223 | 12 | 12 | 346 | 4 | 343 | 5.98e-32 | 123 |
MS.gene054945.t1 | MTR_5g074600 | 27.500 | 320 | 218 | 8 | 31 | 343 | 32 | 344 | 7.26e-32 | 123 |
MS.gene054945.t1 | MTR_7g024500 | 28.235 | 340 | 212 | 11 | 29 | 356 | 29 | 348 | 1.79e-31 | 122 |
MS.gene054945.t1 | MTR_4g033015 | 30.172 | 348 | 221 | 11 | 24 | 357 | 23 | 362 | 4.53e-31 | 121 |
MS.gene054945.t1 | MTR_5g074680 | 27.747 | 364 | 243 | 12 | 2 | 357 | 8 | 359 | 7.93e-31 | 120 |
MS.gene054945.t1 | MTR_5g074580 | 28.125 | 352 | 229 | 12 | 2 | 343 | 8 | 345 | 8.01e-31 | 120 |
MS.gene054945.t1 | MTR_4g088200 | 28.487 | 337 | 223 | 11 | 31 | 357 | 32 | 360 | 9.40e-31 | 120 |
MS.gene054945.t1 | MTR_4g033200 | 29.885 | 348 | 222 | 11 | 24 | 357 | 23 | 362 | 6.82e-30 | 117 |
MS.gene054945.t1 | MTR_8g068620 | 46.364 | 110 | 58 | 1 | 150 | 259 | 2 | 110 | 3.01e-28 | 107 |
MS.gene054945.t1 | MTR_1g036510 | 33.193 | 238 | 149 | 6 | 9 | 238 | 29 | 264 | 6.43e-28 | 110 |
MS.gene054945.t1 | MTR_4g088190 | 29.118 | 340 | 220 | 10 | 31 | 357 | 32 | 363 | 8.96e-28 | 112 |
MS.gene054945.t1 | MTR_4g033150 | 28.319 | 339 | 223 | 10 | 31 | 357 | 32 | 362 | 2.11e-26 | 108 |
MS.gene054945.t1 | MTR_5g074540 | 25.862 | 348 | 224 | 12 | 2 | 343 | 7 | 326 | 3.07e-26 | 107 |
MS.gene054945.t1 | MTR_5g074610 | 27.273 | 319 | 191 | 10 | 31 | 343 | 28 | 311 | 5.65e-25 | 103 |
MS.gene054945.t1 | MTR_4g033170 | 27.964 | 329 | 219 | 11 | 24 | 343 | 23 | 342 | 2.64e-21 | 94.0 |
MS.gene054945.t1 | MTR_1g076930 | 26.160 | 237 | 163 | 7 | 29 | 259 | 7 | 237 | 1.75e-18 | 84.0 |
MS.gene054945.t1 | MTR_4g033085 | 27.660 | 329 | 220 | 11 | 24 | 343 | 23 | 342 | 2.12e-18 | 85.5 |
MS.gene054945.t1 | MTR_8g068760 | 35.000 | 100 | 64 | 1 | 259 | 358 | 135 | 233 | 6.51e-12 | 65.1 |
MS.gene054945.t1 | MTR_0794s0020 | 28.125 | 224 | 146 | 8 | 31 | 245 | 32 | 249 | 4.51e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054945.t1 | AT3G53140 | 57.550 | 351 | 145 | 1 | 12 | 358 | 9 | 359 | 4.45e-152 | 432 |
MS.gene054945.t1 | AT5G54160 | 40.719 | 334 | 189 | 6 | 14 | 343 | 18 | 346 | 6.98e-76 | 238 |
MS.gene054945.t1 | AT1G33030 | 34.985 | 343 | 214 | 7 | 23 | 358 | 10 | 350 | 4.06e-58 | 192 |
MS.gene054945.t1 | AT1G51990 | 34.812 | 293 | 184 | 4 | 53 | 340 | 54 | 344 | 1.39e-57 | 191 |
MS.gene054945.t1 | AT1G51990 | 35.154 | 293 | 183 | 4 | 53 | 340 | 54 | 344 | 5.65e-57 | 189 |
MS.gene054945.t1 | AT1G77520 | 31.805 | 349 | 223 | 7 | 22 | 358 | 36 | 381 | 5.45e-53 | 179 |
MS.gene054945.t1 | AT1G77530 | 34.091 | 352 | 211 | 10 | 22 | 358 | 36 | 381 | 3.97e-44 | 156 |
MS.gene054945.t1 | AT1G21100 | 32.778 | 360 | 229 | 9 | 8 | 358 | 18 | 373 | 4.16e-41 | 148 |
MS.gene054945.t1 | AT5G53810 | 33.025 | 324 | 201 | 8 | 29 | 339 | 39 | 359 | 1.29e-40 | 147 |
MS.gene054945.t1 | AT1G63140 | 31.322 | 348 | 226 | 7 | 22 | 358 | 36 | 381 | 4.30e-40 | 145 |
MS.gene054945.t1 | AT1G63140 | 31.322 | 348 | 226 | 7 | 22 | 358 | 56 | 401 | 8.32e-40 | 145 |
MS.gene054945.t1 | AT1G21120 | 32.778 | 360 | 229 | 10 | 8 | 358 | 18 | 373 | 1.15e-39 | 144 |
MS.gene054945.t1 | AT1G21130 | 32.222 | 360 | 231 | 9 | 8 | 358 | 18 | 373 | 1.30e-39 | 144 |
MS.gene054945.t1 | AT1G21120 | 32.778 | 360 | 229 | 10 | 8 | 358 | 66 | 421 | 5.51e-39 | 144 |
MS.gene054945.t1 | AT1G21110 | 32.222 | 360 | 231 | 9 | 8 | 358 | 18 | 373 | 8.35e-39 | 142 |
MS.gene054945.t1 | AT1G76790 | 31.476 | 359 | 229 | 9 | 12 | 358 | 12 | 365 | 2.18e-38 | 140 |
MS.gene054945.t1 | AT5G37170 | 38.660 | 194 | 115 | 4 | 167 | 358 | 43 | 234 | 5.13e-38 | 136 |
MS.gene054945.t1 | AT5G37170 | 39.362 | 188 | 110 | 4 | 173 | 358 | 1 | 186 | 1.31e-37 | 134 |
MS.gene054945.t1 | AT5G37170 | 38.660 | 194 | 115 | 4 | 167 | 358 | 143 | 334 | 6.33e-37 | 136 |
MS.gene054945.t1 | AT1G62900 | 38.220 | 191 | 117 | 1 | 168 | 358 | 16 | 205 | 1.35e-34 | 126 |
MS.gene054945.t1 | AT1G33030 | 34.263 | 251 | 157 | 6 | 23 | 266 | 10 | 259 | 4.25e-34 | 127 |
MS.gene054945.t1 | AT1G33030 | 34.836 | 244 | 151 | 6 | 23 | 259 | 10 | 252 | 4.56e-34 | 127 |
MS.gene054945.t1 | AT4G35160 | 29.752 | 363 | 234 | 10 | 1 | 348 | 15 | 371 | 6.31e-34 | 129 |
MS.gene054945.t1 | AT4G35150 | 26.891 | 357 | 209 | 9 | 1 | 348 | 1 | 314 | 1.00e-30 | 119 |
MS.gene054945.t1 | AT1G63140 | 32.129 | 249 | 156 | 7 | 22 | 259 | 56 | 302 | 1.15e-23 | 99.8 |
MS.gene054945.t1 | AT1G21130 | 31.206 | 282 | 180 | 8 | 8 | 278 | 18 | 296 | 2.42e-22 | 95.9 |
MS.gene054945.t1 | AT1G77530 | 32.314 | 229 | 140 | 7 | 22 | 238 | 36 | 261 | 2.11e-16 | 78.6 |
MS.gene054945.t1 | AT1G63140 | 30.131 | 229 | 147 | 7 | 21 | 238 | 55 | 281 | 3.21e-14 | 72.8 |
Find 100 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAGCGAGGCTTGCCATTT+TGG | 0.196493 | 3.1:-76511324 | MS.gene054945:CDS |
GTTGATGTTGGTGGCAATTC+TGG | 0.233978 | 3.1:-76510284 | MS.gene054945:CDS |
TCCGCCATTGGGACGGACTA+TGG | 0.310272 | 3.1:+76511184 | None:intergenic |
TAAAACAAACTCATTTCTTC+TGG | 0.323627 | 3.1:+76510389 | None:intergenic |
AATTCAAGTACAGGCAAATA+AGG | 0.328492 | 3.1:+76507190 | None:intergenic |
TGAAAGTACCTGAAGCTATA+TGG | 0.371128 | 3.1:-76511250 | MS.gene054945:CDS |
CCACCTTGCCATATAGCTTC+AGG | 0.378883 | 3.1:+76511242 | None:intergenic |
TTGATGCCTTTGAGTATGTT+TGG | 0.379016 | 3.1:+76510230 | None:intergenic |
GCAAGCCTCGCTTCACTTTG+AGG | 0.394145 | 3.1:+76511332 | None:intergenic |
AAAATTGATTCTTTGTGAAC+CGG | 0.399849 | 3.1:-76507380 | MS.gene054945:CDS |
CAGGCAAATAAGGATCAATA+TGG | 0.400215 | 3.1:+76507200 | None:intergenic |
TCTTTGTGAACCGGTGTTGC+CGG | 0.403316 | 3.1:-76507371 | MS.gene054945:CDS |
TGGGGATGCTATCTTCATTA+AGG | 0.409531 | 3.1:-76509896 | MS.gene054945:intron |
CATTGTTGGCGGCTGACATA+TGG | 0.414881 | 3.1:-76507318 | MS.gene054945:CDS |
TTCAGCGTCTCCTCCGCCAT+TGG | 0.420478 | 3.1:+76511172 | None:intergenic |
AAGTTGTTTGAATTCTTCTT+CGG | 0.424797 | 3.1:+76507258 | None:intergenic |
TAAAAGAACAAGAGCATTGT+TGG | 0.438527 | 3.1:-76507332 | MS.gene054945:CDS |
TTATTTAAACCTGATGGTGC+TGG | 0.448459 | 3.1:+76511000 | None:intergenic |
AACGGCCATGCTCGCAGGTA+CGG | 0.451973 | 3.1:+76510497 | None:intergenic |
TAGTAAACAATAATGGAGAA+TGG | 0.453157 | 3.1:-76511374 | None:intergenic |
AGTAAACAATAATGGAGAAT+GGG | 0.454231 | 3.1:-76511373 | None:intergenic |
TCAGCGTCTCCTCCGCCATT+GGG | 0.454837 | 3.1:+76511173 | None:intergenic |
AATGACAATGTATAGAACTA+AGG | 0.459777 | 3.1:-76507293 | MS.gene054945:CDS |
CACTTGAATCAGTTCCGGCT+GGG | 0.462198 | 3.1:-76509915 | MS.gene054945:CDS |
CCTGCGAGCATGGCCGTTGG+TGG | 0.463499 | 3.1:-76510492 | MS.gene054945:CDS |
AATGTGTGCAAGTTCCAAAA+TGG | 0.463723 | 3.1:+76511310 | None:intergenic |
AAACAACTTGGCATTTCTGC+TGG | 0.463760 | 3.1:-76507244 | MS.gene054945:CDS |
GAGAATTATGATGGCTTCAA+AGG | 0.465146 | 3.1:-76510320 | MS.gene054945:CDS |
TTACTCTCATCGGTCTGCTC+CGG | 0.470793 | 3.1:+76507352 | None:intergenic |
TGATGCACTTGAATCAGTTC+CGG | 0.476408 | 3.1:-76509920 | MS.gene054945:CDS |
AGAATTTGAGAGGCAGAGAG+TGG | 0.478385 | 3.1:+76511209 | None:intergenic |
CCACCAACGGCCATGCTCGC+AGG | 0.480027 | 3.1:+76510492 | None:intergenic |
TAGTATAAGTGGTGAGCAAA+CGG | 0.493082 | 3.1:+76511132 | None:intergenic |
GCATATGCATATTGCACAAA+GGG | 0.496481 | 3.1:-76510413 | MS.gene054945:CDS |
CATTTATGAAATTCAAGTAC+AGG | 0.499673 | 3.1:+76507181 | None:intergenic |
GAAATGTTGGAGAATTATGA+TGG | 0.500624 | 3.1:-76510329 | MS.gene054945:CDS |
TACAAGGCTCTTCCAGTGGC+CGG | 0.508003 | 3.1:-76507403 | MS.gene054945:CDS |
ACGGCCATGCTCGCAGGTAC+GGG | 0.509344 | 3.1:+76510498 | None:intergenic |
TCTTCTGCACCTCAATATCC+AGG | 0.511364 | 3.1:-76510185 | MS.gene054945:intron |
GCACTTGAATCAGTTCCGGC+TGG | 0.511694 | 3.1:-76509916 | MS.gene054945:CDS |
GACTAATTACCTGGATATTG+AGG | 0.516427 | 3.1:+76510176 | None:intergenic |
GGCCTTGCAAAGTTGTTACA+AGG | 0.518740 | 3.1:-76507419 | MS.gene054945:CDS |
AGGTGCAGAAGAGATCATAT+CGG | 0.519685 | 3.1:+76510196 | None:intergenic |
TTCTCGAACGGTTCCACAGT+TGG | 0.522298 | 3.1:+76510452 | None:intergenic |
TCCAACATTTCCCTCATGTA+GGG | 0.523535 | 3.1:+76510341 | None:intergenic |
TCTCCGTGCAGCTTCTCGAA+CGG | 0.525123 | 3.1:+76510440 | None:intergenic |
GCCCTACATGAGGGAAATGT+TGG | 0.530544 | 3.1:-76510342 | MS.gene054945:CDS |
CTGCGAGCATGGCCGTTGGT+GGG | 0.530884 | 3.1:-76510491 | MS.gene054945:CDS |
TGCAGTGGACAGTGTTAACA+TGG | 0.535443 | 3.1:-76507462 | MS.gene054945:intron |
TCGGTCTGCTCCGGCAACAC+CGG | 0.535499 | 3.1:+76507361 | None:intergenic |
GGGCAATGACATCCCGGACA+TGG | 0.544215 | 3.1:+76510361 | None:intergenic |
CAGGTCAGACCATCATCATC+GGG | 0.545460 | 3.1:+76511038 | None:intergenic |
CGTCTCCTCCGCCATTGGGA+CGG | 0.546520 | 3.1:+76511177 | None:intergenic |
GCTCTTGTTCCCGATGATGA+TGG | 0.547808 | 3.1:-76511047 | MS.gene054945:CDS |
AGGACCCGTACCTGCGAGCA+TGG | 0.558958 | 3.1:-76510502 | MS.gene054945:CDS |
ATGACAATGTATAGAACTAA+GGG | 0.561414 | 3.1:-76507292 | MS.gene054945:CDS |
GGTGCAGAAGAGATCATATC+GGG | 0.566072 | 3.1:+76510197 | None:intergenic |
AGCCTTGTAACAACTTTGCA+AGG | 0.570449 | 3.1:+76507417 | None:intergenic |
ACAGGTCAGACCATCATCAT+CGG | 0.570773 | 3.1:+76511037 | None:intergenic |
CATGTAGGGCAATGACATCC+CGG | 0.570892 | 3.1:+76510355 | None:intergenic |
GCCGTTGGTGGGAGACGCAG+TGG | 0.570986 | 3.1:-76510480 | MS.gene054945:CDS |
ACTTGAATCAGTTCCGGCTG+GGG | 0.571520 | 3.1:-76509914 | MS.gene054945:CDS |
CTCCAACATTTCCCTCATGT+AGG | 0.575549 | 3.1:+76510340 | None:intergenic |
TCCATAGTCCGTCCCAATGG+CGG | 0.577664 | 3.1:-76511185 | MS.gene054945:CDS |
ACTTGAGCAGCAATGGTGAA+AGG | 0.580995 | 3.1:-76511097 | MS.gene054945:CDS |
GTTGAGGACTTGAGCAGCAA+TGG | 0.582872 | 3.1:-76511104 | MS.gene054945:CDS |
AGCTTTACCGACATCGGTGA+GGG | 0.585301 | 3.1:+76511067 | None:intergenic |
CTCTCCATAGTCCGTCCCAA+TGG | 0.588927 | 3.1:-76511188 | MS.gene054945:CDS |
AAGTACTCCCTCACCGATGT+CGG | 0.589045 | 3.1:-76511074 | MS.gene054945:CDS |
GAAGAAGAATTCAAACAACT+TGG | 0.589425 | 3.1:-76507256 | MS.gene054945:CDS |
GTGGAGACTCTAGTTGATGT+TGG | 0.592031 | 3.1:-76510296 | MS.gene054945:CDS |
GTACCTGAAGCTATATGGCA+AGG | 0.593518 | 3.1:-76511245 | MS.gene054945:CDS |
AAGAACAAGAGCATTGTTGG+CGG | 0.593672 | 3.1:-76507329 | MS.gene054945:CDS |
GTTGGTGGGAGACGCAGTGG+AGG | 0.598693 | 3.1:-76510477 | MS.gene054945:CDS |
CAAATAAGGATCAATATGGA+AGG | 0.598974 | 3.1:+76507204 | None:intergenic |
GGATGTCATTGCCCTACATG+AGG | 0.599139 | 3.1:-76510352 | MS.gene054945:CDS |
AAATATCCAAACATACTCAA+AGG | 0.599530 | 3.1:-76510236 | MS.gene054945:CDS |
ATAGTCCGTCCCAATGGCGG+AGG | 0.606262 | 3.1:-76511182 | MS.gene054945:CDS |
AACAAGAGCTTTACCGACAT+CGG | 0.606967 | 3.1:+76511061 | None:intergenic |
TCCACTGCGTCTCCCACCAA+CGG | 0.608024 | 3.1:+76510479 | None:intergenic |
ATGAAGATAGCATCCCCAGC+CGG | 0.608469 | 3.1:+76509901 | None:intergenic |
TTATGATGGCTTCAAAGGTG+TGG | 0.610913 | 3.1:-76510315 | MS.gene054945:CDS |
GACAGATGAAGAATTCAAGA+AGG | 0.615326 | 3.1:-76507440 | MS.gene054945:CDS |
GATGTCATTGCCCTACATGA+GGG | 0.616477 | 3.1:-76510351 | MS.gene054945:CDS |
TTGTTACAAGGCTCTTCCAG+TGG | 0.616923 | 3.1:-76507407 | MS.gene054945:CDS |
GACTATGGAGAGAATTTGAG+AGG | 0.637733 | 3.1:+76511199 | None:intergenic |
AGCATATGCATATTGCACAA+AGG | 0.638121 | 3.1:-76510414 | MS.gene054945:CDS |
GAACCGTTCGAGAAGCTGCA+CGG | 0.649830 | 3.1:-76510443 | MS.gene054945:CDS |
GTACCTGCGAGCATGGCCGT+TGG | 0.655083 | 3.1:-76510495 | MS.gene054945:CDS |
GAGCTTTACCGACATCGGTG+AGG | 0.661236 | 3.1:+76511066 | None:intergenic |
TGAGCAAACGGAGGATACGT+TGG | 0.661794 | 3.1:+76511144 | None:intergenic |
GAGACTCTAGTTGATGTTGG+TGG | 0.662906 | 3.1:-76510293 | MS.gene054945:CDS |
GGAGAATGGGAAAGTTGCTG+TGG | 0.664770 | 3.1:-76511360 | MS.gene054945:CDS |
AGAACAGCATTAAGGGACGT+AGG | 0.670135 | 3.1:+76511278 | None:intergenic |
CGCAGTGGAGGATCCAACTG+TGG | 0.674969 | 3.1:-76510465 | MS.gene054945:CDS |
CCTGAAGCTATATGGCAAGG+TGG | 0.693132 | 3.1:-76511242 | MS.gene054945:CDS |
TAAAGCCTCAAAGTGAAGCG+AGG | 0.698513 | 3.1:-76511337 | MS.gene054945:CDS |
TATAAGTGGTGAGCAAACGG+AGG | 0.715321 | 3.1:+76511135 | None:intergenic |
TATATAGGTATAACACACGT+CGG | 0.727621 | 3.1:-76509946 | MS.gene054945:intron |
ATAGGTATAACACACGTCGG+TGG | 0.737739 | 3.1:-76509943 | MS.gene054945:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTTACATCATAATTTA+AGG | - | chr3.1:76510261-76510280 | MS.gene054945:CDS | 10.0% |
!! | AAATTTACATCATAATTTAA+GGG | - | chr3.1:76510262-76510281 | MS.gene054945:CDS | 10.0% |
!! | ACAGTTATTATAATTATTAT+TGG | - | chr3.1:76507701-76507720 | MS.gene054945:intron | 10.0% |
!! | CAGTTATTATAATTATTATT+GGG | - | chr3.1:76507702-76507721 | MS.gene054945:intron | 10.0% |
!!! | ATAACCAAAATTTTATTATT+AGG | - | chr3.1:76508802-76508821 | MS.gene054945:intron | 10.0% |
!!! | TTTTTTAAATTAGACTAATT+AGG | + | chr3.1:76508420-76508439 | None:intergenic | 10.0% |
!! | AAGAAGAAAAAAAAGATTAA+TGG | - | chr3.1:76507660-76507679 | MS.gene054945:intron | 15.0% |
!! | AATTTACATCATAATTTAAG+GGG | - | chr3.1:76510263-76510282 | MS.gene054945:CDS | 15.0% |
!! | TCCTTAAAAAAATATATTAG+TGG | - | chr3.1:76508476-76508495 | MS.gene054945:intron | 15.0% |
!! | TTAGACTATTATAACAATAA+GGG | - | chr3.1:76509804-76509823 | MS.gene054945:intron | 15.0% |
!!! | AAAGTATCAAATGATATTTT+TGG | + | chr3.1:76510904-76510923 | None:intergenic | 15.0% |
!!! | ACTTACTTTTTTGTTTTTTT+GGG | - | chr3.1:76508909-76508928 | MS.gene054945:intron | 15.0% |
!!! | CTAATATATTTTTTTAAGGA+TGG | + | chr3.1:76508476-76508495 | None:intergenic | 15.0% |
!!! | TACTCCTAATAATAAAATTT+TGG | + | chr3.1:76508809-76508828 | None:intergenic | 15.0% |
!!! | TACTTACTTTTTTGTTTTTT+TGG | - | chr3.1:76508908-76508927 | MS.gene054945:intron | 15.0% |
!!! | TATTTTTTATAAGAAACTAG+CGG | + | chr3.1:76510464-76510483 | None:intergenic | 15.0% |
!!! | TCCACTAATATATTTTTTTA+AGG | + | chr3.1:76508480-76508499 | None:intergenic | 15.0% |
!!! | TTCAAATTATTTAACTTTTG+TGG | - | chr3.1:76508569-76508588 | MS.gene054945:intron | 15.0% |
!! | AAAAAAAAATACAAAAGGTC+AGG | - | chr3.1:76508991-76509010 | MS.gene054945:intron | 20.0% |
!! | AAAAAAAATACAAAAGGTCA+GGG | - | chr3.1:76508992-76509011 | MS.gene054945:intron | 20.0% |
!! | AATTTAATAAAATTAGTCCG+TGG | + | chr3.1:76508529-76508548 | None:intergenic | 20.0% |
!! | ATAAAAAAGTAAGTAGATAG+TGG | + | chr3.1:76508784-76508803 | None:intergenic | 20.0% |
!! | ATAAGTTTATTTAAACCTGA+TGG | + | chr3.1:76507551-76507570 | None:intergenic | 20.0% |
!! | GTAAAATAAGCAAGATTATA+AGG | + | chr3.1:76510853-76510872 | None:intergenic | 20.0% |
!! | GTTAGACTATTATAACAATA+AGG | - | chr3.1:76509803-76509822 | MS.gene054945:intron | 20.0% |
!! | TACAAAATCAACTTATAAGT+CGG | + | chr3.1:76507870-76507889 | None:intergenic | 20.0% |
!! | TAGACTATTATAACAATAAG+GGG | - | chr3.1:76509805-76509824 | MS.gene054945:intron | 20.0% |
!! | TATAATAACTGTGTATTTGT+TGG | + | chr3.1:76507693-76507712 | None:intergenic | 20.0% |
!! | TATGTTTGAACATTAGTTAT+TGG | + | chr3.1:76508847-76508866 | None:intergenic | 20.0% |
!!! | AAAATATTTTGGAGATAAGT+AGG | + | chr3.1:76508699-76508718 | None:intergenic | 20.0% |
!!! | ACGAACTTGTTATAATATAT+GGG | + | chr3.1:76507931-76507950 | None:intergenic | 20.0% |
!!! | AGGTAATTAGTCTATTTTTT+GGG | - | chr3.1:76508377-76508396 | MS.gene054945:intron | 20.0% |
!!! | GATACTTTAGATTTTCTTTA+AGG | - | chr3.1:76510916-76510935 | MS.gene054945:intron | 20.0% |
!!! | GCTAAAGTTGAAAAATATTT+TGG | + | chr3.1:76508710-76508729 | None:intergenic | 20.0% |
!!! | TAATGATGATCTTGTTTTTT+TGG | + | chr3.1:76510569-76510588 | None:intergenic | 20.0% |
!!! | TAATTTTGTGGAAATGAATA+TGG | - | chr3.1:76507743-76507762 | MS.gene054945:intron | 20.0% |
!!! | TATATTTTTTTAAGGATGGT+CGG | + | chr3.1:76508472-76508491 | None:intergenic | 20.0% |
!!! | TTTTAATTTATCTAAGGTGT+TGG | + | chr3.1:76508967-76508986 | None:intergenic | 20.0% |
!!! | TTTTTTTTCTCTCTTTTCAT+TGG | - | chr3.1:76509873-76509892 | MS.gene054945:intron | 20.0% |
! | AAAAATCAGACAAGGAAAAA+GGG | - | chr3.1:76509222-76509241 | MS.gene054945:intron | 25.0% |
! | AAATATCCAAACATACTCAA+AGG | - | chr3.1:76508306-76508325 | MS.gene054945:intron | 25.0% |
! | AAGCAAGATTATAAGGAATA+TGG | + | chr3.1:76510846-76510865 | None:intergenic | 25.0% |
! | AAGTTGTTTGAATTCTTCTT+CGG | + | chr3.1:76511287-76511306 | None:intergenic | 25.0% |
! | AATGACAATGTATAGAACTA+AGG | - | chr3.1:76511249-76511268 | MS.gene054945:CDS | 25.0% |
! | ATGACAATGTATAGAACTAA+GGG | - | chr3.1:76511250-76511269 | MS.gene054945:CDS | 25.0% |
! | CAAAAAATAGACTAATTACC+TGG | + | chr3.1:76508378-76508397 | None:intergenic | 25.0% |
! | CATTTATGAAATTCAAGTAC+AGG | + | chr3.1:76511364-76511383 | None:intergenic | 25.0% |
! | CTCAACAAAAATAGTATAAG+TGG | + | chr3.1:76507424-76507443 | None:intergenic | 25.0% |
! | GTTAGATTGACAAATATTAG+AGG | - | chr3.1:76508445-76508464 | MS.gene054945:intron | 25.0% |
! | TAAAACAAACTCATTTCTTC+TGG | + | chr3.1:76508156-76508175 | None:intergenic | 25.0% |
! | TCAAAAAAAATCAAACGTAC+AGG | - | chr3.1:76508020-76508039 | MS.gene054945:intron | 25.0% |
! | TTAAATCTTGGTTTCTATGA+CGG | + | chr3.1:76509145-76509164 | None:intergenic | 25.0% |
! | TTCATAGTACTCACTAAATT+CGG | - | chr3.1:76510797-76510816 | MS.gene054945:intron | 25.0% |
!! | ATAAGTTAAGTTGTCTCATT+TGG | + | chr3.1:76509847-76509866 | None:intergenic | 25.0% |
!! | GATCTTTCTTTTCACTTATT+TGG | + | chr3.1:76510495-76510514 | None:intergenic | 25.0% |
!! | TAGCAACCATTTTGTATTAT+GGG | + | chr3.1:76508876-76508895 | None:intergenic | 25.0% |
!! | TTAGCAACCATTTTGTATTA+TGG | + | chr3.1:76508877-76508896 | None:intergenic | 25.0% |
!! | TTTTCATTGGTCAAAAACAA+TGG | - | chr3.1:76509886-76509905 | MS.gene054945:intron | 25.0% |
!!! | ACTAAGAGTACTTAATTTTG+TGG | - | chr3.1:76507731-76507750 | MS.gene054945:intron | 25.0% |
!!! | ATTGGACAATTTTATTTGGT+TGG | + | chr3.1:76509397-76509416 | None:intergenic | 25.0% |
!!! | CACGAACTTGTTATAATATA+TGG | + | chr3.1:76507932-76507951 | None:intergenic | 25.0% |
!!! | CACTTATACTATTTTTGTTG+AGG | - | chr3.1:76507422-76507441 | MS.gene054945:CDS | 25.0% |
!!! | CAGGTAATTAGTCTATTTTT+TGG | - | chr3.1:76508376-76508395 | MS.gene054945:intron | 25.0% |
!!! | CATATCTCTATTTTTGAGAA+GGG | + | chr3.1:76508756-76508775 | None:intergenic | 25.0% |
!!! | GTATAATTATTGTTTTGCAG+TGG | - | chr3.1:76511065-76511084 | MS.gene054945:CDS | 25.0% |
!!! | TCATATCTCTATTTTTGAGA+AGG | + | chr3.1:76508757-76508776 | None:intergenic | 25.0% |
!!! | TTGGACAATTTTATTTGGTT+GGG | + | chr3.1:76509396-76509415 | None:intergenic | 25.0% |
!!! | TTGTTTTATTTGTGACAATG+AGG | - | chr3.1:76510171-76510190 | MS.gene054945:intron | 25.0% |
AAAATCAACTTATAAGTCGG+AGG | + | chr3.1:76507867-76507886 | None:intergenic | 30.0% | |
AAATAAAATTGTCCAATCCG+AGG | - | chr3.1:76509400-76509419 | MS.gene054945:intron | 30.0% | |
AACCAAAAAACTAACATGGT+CGG | + | chr3.1:76508503-76508522 | None:intergenic | 30.0% | |
AATTCAAGTACAGGCAAATA+AGG | + | chr3.1:76511355-76511374 | None:intergenic | 30.0% | |
AGACTAATTAGGTTCCAAAA+TGG | + | chr3.1:76508409-76508428 | None:intergenic | 30.0% | |
ATAATACAACCAACTCAAAG+GGG | - | chr3.1:76509085-76509104 | MS.gene054945:intron | 30.0% | |
CAAAAATCAGACAAGGAAAA+AGG | - | chr3.1:76509221-76509240 | MS.gene054945:intron | 30.0% | |
CAAATAAGGATCAATATGGA+AGG | + | chr3.1:76511341-76511360 | None:intergenic | 30.0% | |
CAGTATATTATGCAGTACTT+CGG | + | chr3.1:76509770-76509789 | None:intergenic | 30.0% | |
GAAATGTTGGAGAATTATGA+TGG | - | chr3.1:76508213-76508232 | MS.gene054945:intron | 30.0% | |
GAAGAAGAATTCAAACAACT+TGG | - | chr3.1:76511286-76511305 | MS.gene054945:CDS | 30.0% | |
GACAAACCAAAAAACTAACA+TGG | + | chr3.1:76508507-76508526 | None:intergenic | 30.0% | |
GAGGAAATCATATCTTACTA+TGG | + | chr3.1:76508734-76508753 | None:intergenic | 30.0% | |
GATAATACAACCAACTCAAA+GGG | - | chr3.1:76509084-76509103 | MS.gene054945:intron | 30.0% | |
GTCATAGAAACCAAGATTTA+AGG | - | chr3.1:76509144-76509163 | MS.gene054945:intron | 30.0% | |
TAAATCTTGGTTTCTATGAC+GGG | + | chr3.1:76509144-76509163 | None:intergenic | 30.0% | |
TATATAGGTATAACACACGT+CGG | - | chr3.1:76508596-76508615 | MS.gene054945:intron | 30.0% | |
TATTCGTTCACCTTAAATCT+TGG | + | chr3.1:76509157-76509176 | None:intergenic | 30.0% | |
TTCGATCACATCTAATAGTA+CGG | + | chr3.1:76507781-76507800 | None:intergenic | 30.0% | |
! | AACTTTTGTGGCATGTATAT+AGG | - | chr3.1:76508581-76508600 | MS.gene054945:intron | 30.0% |
! | CAACTAAATCTAAAGCTACA+CGG | - | chr3.1:76509446-76509465 | MS.gene054945:intron | 30.0% |
! | CTTTTTCCTTGTCTGATTTT+TGG | + | chr3.1:76509223-76509242 | None:intergenic | 30.0% |
! | TCTTGTTCTTTTACTCTCAT+CGG | + | chr3.1:76511203-76511222 | None:intergenic | 30.0% |
!! | CATTTTGAGAACAGCATTAA+GGG | + | chr3.1:76507274-76507293 | None:intergenic | 30.0% |
!! | TAAAAGAACAAGAGCATTGT+TGG | - | chr3.1:76511210-76511229 | MS.gene054945:CDS | 30.0% |
!! | TCATTTTGAGAACAGCATTA+AGG | + | chr3.1:76507275-76507294 | None:intergenic | 30.0% |
!! | TCGGATTGGACAATTTTATT+TGG | + | chr3.1:76509401-76509420 | None:intergenic | 30.0% |
!! | TGGACAATTTTATTTGGTTG+GGG | + | chr3.1:76509395-76509414 | None:intergenic | 30.0% |
!!! | AAGTTTTAAACCAACCAGAA+AGG | - | chr3.1:76509062-76509081 | MS.gene054945:intron | 30.0% |
!!! | CTGGTTGGTTTAAAACTTTT+TGG | + | chr3.1:76509060-76509079 | None:intergenic | 30.0% |
!!! | TTAGTTTTTTGGTTTGTCCA+CGG | - | chr3.1:76508509-76508528 | MS.gene054945:intron | 30.0% |
AAATTGGATAGACAGCTTTG+TGG | - | chr3.1:76510431-76510450 | MS.gene054945:CDS | 35.0% | |
AACTCAGAATATATCCGGAT+CGG | - | chr3.1:76509699-76509718 | MS.gene054945:intron | 35.0% | |
AATGTGTGCAAGTTCCAAAA+TGG | + | chr3.1:76507235-76507254 | None:intergenic | 35.0% | |
ACCCAAACTCAGAATATATC+CGG | - | chr3.1:76509694-76509713 | MS.gene054945:intron | 35.0% | |
ACGTGTTCAATACAATCAAG+TGG | - | chr3.1:76510675-76510694 | MS.gene054945:intron | 35.0% | |
AGCATATGCATATTGCACAA+AGG | - | chr3.1:76508128-76508147 | MS.gene054945:intron | 35.0% | |
ATCCGGATATATTCTGAGTT+TGG | + | chr3.1:76509699-76509718 | None:intergenic | 35.0% | |
CAGGCAAATAAGGATCAATA+TGG | + | chr3.1:76511345-76511364 | None:intergenic | 35.0% | |
CATCAGCCCATAATACAAAA+TGG | - | chr3.1:76508867-76508886 | MS.gene054945:intron | 35.0% | |
CTGAAAACTAGCTGACAATA+GGG | - | chr3.1:76510710-76510729 | MS.gene054945:intron | 35.0% | |
GACAGATGAAGAATTCAAGA+AGG | - | chr3.1:76511102-76511121 | MS.gene054945:CDS | 35.0% | |
GACTAATTACCTGGATATTG+AGG | + | chr3.1:76508369-76508388 | None:intergenic | 35.0% | |
GAGAATTATGATGGCTTCAA+AGG | - | chr3.1:76508222-76508241 | MS.gene054945:intron | 35.0% | |
GCATATGCATATTGCACAAA+GGG | - | chr3.1:76508129-76508148 | MS.gene054945:intron | 35.0% | |
GGATAATACAACCAACTCAA+AGG | - | chr3.1:76509083-76509102 | MS.gene054945:intron | 35.0% | |
GTAATAGAAAACTCGTGTAG+TGG | - | chr3.1:76510143-76510162 | MS.gene054945:intron | 35.0% | |
GTTGGTTGTATTATCCTTTC+TGG | + | chr3.1:76509079-76509098 | None:intergenic | 35.0% | |
TACACGGTTTAATCTCAACA+AGG | - | chr3.1:76509462-76509481 | MS.gene054945:intron | 35.0% | |
TAGTATAAGTGGTGAGCAAA+CGG | + | chr3.1:76507413-76507432 | None:intergenic | 35.0% | |
TATTATGCAGTACTTCGGTT+TGG | + | chr3.1:76509765-76509784 | None:intergenic | 35.0% | |
TCCAGTCTCTAACTTGATTT+GGG | + | chr3.1:76509267-76509286 | None:intergenic | 35.0% | |
TCCGGATATATTCTGAGTTT+GGG | + | chr3.1:76509698-76509717 | None:intergenic | 35.0% | |
TTCCAGTCTCTAACTTGATT+TGG | + | chr3.1:76509268-76509287 | None:intergenic | 35.0% | |
TTGATGCCTTTGAGTATGTT+TGG | + | chr3.1:76508315-76508334 | None:intergenic | 35.0% | |
TTGATTTATCCCCTTTGAGT+TGG | + | chr3.1:76509097-76509116 | None:intergenic | 35.0% | |
! | GTTGTATTATCCTTTCTGGT+TGG | + | chr3.1:76509075-76509094 | None:intergenic | 35.0% |
! | TTATTTAAACCTGATGGTGC+TGG | + | chr3.1:76507545-76507564 | None:intergenic | 35.0% |
!! | ATTTATCTAAGGTGTTGGAG+TGG | + | chr3.1:76508962-76508981 | None:intergenic | 35.0% |
!! | CGTGTAGCTTTAGATTTAGT+TGG | + | chr3.1:76509448-76509467 | None:intergenic | 35.0% |
!! | TGAAAGTACCTGAAGCTATA+TGG | - | chr3.1:76507292-76507311 | MS.gene054945:CDS | 35.0% |
!! | TTCAGACTTACTTGCTTTTG+TGG | + | chr3.1:76509544-76509563 | None:intergenic | 35.0% |
!! | TTGTTTTATGCTTCCATGTC+CGG | - | chr3.1:76508168-76508187 | MS.gene054945:intron | 35.0% |
!! | TTTATCTAAGGTGTTGGAGT+GGG | + | chr3.1:76508961-76508980 | None:intergenic | 35.0% |
!!! | ATCTCTATTTTTGAGAAGGG+AGG | + | chr3.1:76508753-76508772 | None:intergenic | 35.0% |
!!! | TTGTGGTGGTTTTTTTGTTG+TGG | + | chr3.1:76509527-76509546 | None:intergenic | 35.0% |
!!! | TTTTTGGGTCACTACCATTT+TGG | - | chr3.1:76508392-76508411 | MS.gene054945:intron | 35.0% |
AAACAACTTGGCATTTCTGC+TGG | - | chr3.1:76511298-76511317 | MS.gene054945:CDS | 40.0% | |
AACAACATGGAAGCTTGTCA+TGG | + | chr3.1:76509584-76509603 | None:intergenic | 40.0% | |
AACAAGAGCTTTACCGACAT+CGG | + | chr3.1:76507484-76507503 | None:intergenic | 40.0% | |
AATCAGACAAGGAAAAAGGG+TGG | - | chr3.1:76509225-76509244 | MS.gene054945:intron | 40.0% | |
ACAACATGGAAGCTTGTCAT+GGG | + | chr3.1:76509583-76509602 | None:intergenic | 40.0% | |
ACGGTTTAATCTCAACAAGG+TGG | - | chr3.1:76509465-76509484 | MS.gene054945:intron | 40.0% | |
AGGTGCAGAAGAGATCATAT+CGG | + | chr3.1:76508349-76508368 | None:intergenic | 40.0% | |
CACGAACCAAAAATCAGACA+AGG | - | chr3.1:76509214-76509233 | MS.gene054945:intron | 40.0% | |
GACTATGGAGAGAATTTGAG+AGG | + | chr3.1:76507346-76507365 | None:intergenic | 40.0% | |
GCTGAAAACTAGCTGACAAT+AGG | - | chr3.1:76510709-76510728 | MS.gene054945:intron | 40.0% | |
GGATATATTCTGAGTTTGGG+TGG | + | chr3.1:76509695-76509714 | None:intergenic | 40.0% | |
GGTTGCTCATAAGTTAGCAA+AGG | + | chr3.1:76510739-76510758 | None:intergenic | 40.0% | |
TACAATCAAGTGGCTCAACT+AGG | - | chr3.1:76510685-76510704 | MS.gene054945:intron | 40.0% | |
TCCAACATTTCCCTCATGTA+GGG | + | chr3.1:76508204-76508223 | None:intergenic | 40.0% | |
TCCCAAATCAAGTTAGAGAC+TGG | - | chr3.1:76509263-76509282 | MS.gene054945:intron | 40.0% | |
TCTTCCACGATTCAACAACA+TGG | + | chr3.1:76509597-76509616 | None:intergenic | 40.0% | |
TGATGCACTTGAATCAGTTC+CGG | - | chr3.1:76508622-76508641 | MS.gene054945:intron | 40.0% | |
TGCTCATAAGTTAGCAAAGG+TGG | + | chr3.1:76510736-76510755 | None:intergenic | 40.0% | |
TGGGGATGCTATCTTCATTA+AGG | - | chr3.1:76508646-76508665 | MS.gene054945:intron | 40.0% | |
TTATGATGGCTTCAAAGGTG+TGG | - | chr3.1:76508227-76508246 | MS.gene054945:intron | 40.0% | |
! | AGATTTAGTTGGCTTCCTGT+TGG | + | chr3.1:76509437-76509456 | None:intergenic | 40.0% |
! | AGCCTTGTAACAACTTTGCA+AGG | + | chr3.1:76511128-76511147 | None:intergenic | 40.0% |
! | GAGATTGATAGCTCAGACAT+GGG | + | chr3.1:76509734-76509753 | None:intergenic | 40.0% |
! | GCTTCTGTGTCATTATGACT+TGG | + | chr3.1:76509321-76509340 | None:intergenic | 40.0% |
! | TGAGATTGATAGCTCAGACA+TGG | + | chr3.1:76509735-76509754 | None:intergenic | 40.0% |
! | TGTTTTATGCTTCCATGTCC+GGG | - | chr3.1:76508169-76508188 | MS.gene054945:intron | 40.0% |
! | TTTGTTGTGGTTCGATCTCA+GGG | + | chr3.1:76509514-76509533 | None:intergenic | 40.0% |
!! | AAGAACAAGAGCATTGTTGG+CGG | - | chr3.1:76511213-76511232 | MS.gene054945:CDS | 40.0% |
!! | AGACTTACTTGCTTTTGTGG+TGG | + | chr3.1:76509541-76509560 | None:intergenic | 40.0% |
!! | TTTTGTTGTGGTTCGATCTC+AGG | + | chr3.1:76509515-76509534 | None:intergenic | 40.0% |
!!! | GACCGACCATGTTAGTTTTT+TGG | - | chr3.1:76508498-76508517 | MS.gene054945:intron | 40.0% |
AACTGTTACTGTTGTTCGCG+TGG | + | chr3.1:76509641-76509660 | None:intergenic | 45.0% | |
ACAGGTCAGACCATCATCAT+CGG | + | chr3.1:76507508-76507527 | None:intergenic | 45.0% | |
ACTTGAGCAGCAATGGTGAA+AGG | - | chr3.1:76507445-76507464 | MS.gene054945:CDS | 45.0% | |
AGAACAGCATTAAGGGACGT+AGG | + | chr3.1:76507267-76507286 | None:intergenic | 45.0% | |
AGAATTTGAGAGGCAGAGAG+TGG | + | chr3.1:76507336-76507355 | None:intergenic | 45.0% | |
AGTTAGAGACTGGAACGAGT+TGG | - | chr3.1:76509273-76509292 | MS.gene054945:intron | 45.0% | |
ATAGGTATAACACACGTCGG+TGG | - | chr3.1:76508599-76508618 | MS.gene054945:intron | 45.0% | |
CAGGGTGGCTTATGTATTCA+TGG | + | chr3.1:76509496-76509515 | None:intergenic | 45.0% | |
CTCCAACATTTCCCTCATGT+AGG | + | chr3.1:76508205-76508224 | None:intergenic | 45.0% | |
CTGGACGAAAAATGATGCAC+AGG | + | chr3.1:76507526-76507545 | None:intergenic | 45.0% | |
GATGTCATTGCCCTACATGA+GGG | - | chr3.1:76508191-76508210 | MS.gene054945:intron | 45.0% | |
GCTTCCATGTTGTTGAATCG+TGG | - | chr3.1:76509590-76509609 | MS.gene054945:intron | 45.0% | |
GGCCTTGCAAAGTTGTTACA+AGG | - | chr3.1:76511123-76511142 | MS.gene054945:CDS | 45.0% | |
GGTGCAGAAGAGATCATATC+GGG | + | chr3.1:76508348-76508367 | None:intergenic | 45.0% | |
GGTGGCTTATGTATTCATGG+TGG | + | chr3.1:76509493-76509512 | None:intergenic | 45.0% | |
GTACCTGAAGCTATATGGCA+AGG | - | chr3.1:76507297-76507316 | MS.gene054945:CDS | 45.0% | |
GTTAGAGACTGGAACGAGTT+GGG | - | chr3.1:76509274-76509293 | MS.gene054945:intron | 45.0% | |
TAAAGCCTCAAAGTGAAGCG+AGG | - | chr3.1:76507205-76507224 | MS.gene054945:CDS | 45.0% | |
TATAAGTGGTGAGCAAACGG+AGG | + | chr3.1:76507410-76507429 | None:intergenic | 45.0% | |
TCTTCTGCACCTCAATATCC+AGG | - | chr3.1:76508357-76508376 | MS.gene054945:intron | 45.0% | |
TGCACGAAGACAAGCAAATG+AGG | + | chr3.1:76510760-76510779 | None:intergenic | 45.0% | |
TGCAGTGGACAGTGTTAACA+TGG | - | chr3.1:76511080-76511099 | MS.gene054945:CDS | 45.0% | |
TTAGAGACTGGAACGAGTTG+GGG | - | chr3.1:76509275-76509294 | MS.gene054945:intron | 45.0% | |
TTCTGCAACACACACAACGA+CGG | - | chr3.1:76509659-76509678 | MS.gene054945:intron | 45.0% | |
TTGTTACAAGGCTCTTCCAG+TGG | - | chr3.1:76511135-76511154 | MS.gene054945:CDS | 45.0% | |
! | ACTGTTGTTCGCGTGGTTTT+GGG | + | chr3.1:76509634-76509653 | None:intergenic | 45.0% |
! | AGAATCAATTTTCCGGCCAC+TGG | + | chr3.1:76511154-76511173 | None:intergenic | 45.0% |
! | AGTTGGCTTCCTGTTGGATT+TGG | + | chr3.1:76509431-76509450 | None:intergenic | 45.0% |
! | ATTTTTCGTCCAGCACCATC+AGG | - | chr3.1:76507533-76507552 | MS.gene054945:intron | 45.0% |
! | GAGACTCTAGTTGATGTTGG+TGG | - | chr3.1:76508249-76508268 | MS.gene054945:intron | 45.0% |
! | GCTTCCTGTTGGATTTGGTT+TGG | + | chr3.1:76509426-76509445 | None:intergenic | 45.0% |
! | GTGGAGACTCTAGTTGATGT+TGG | - | chr3.1:76508246-76508265 | MS.gene054945:intron | 45.0% |
! | TACTGTTGTTCGCGTGGTTT+TGG | + | chr3.1:76509635-76509654 | None:intergenic | 45.0% |
! | TGGGGTTGATCACAACTAGT+TGG | + | chr3.1:76509377-76509396 | None:intergenic | 45.0% |
!! | GTTGATGTTGGTGGCAATTC+TGG | - | chr3.1:76508258-76508277 | MS.gene054945:intron | 45.0% |
!! | TGTTGGATTTGGTTTGGCCT+CGG | + | chr3.1:76509420-76509439 | None:intergenic | 45.0% |
!!! | TGATTTTTGGTTCGTGCTGC+AGG | + | chr3.1:76509210-76509229 | None:intergenic | 45.0% |
!! | AAATACAAAAAAAAAAAAAT+TGG | - | chr3.1:76510415-76510434 | MS.gene054945:CDS | 5.0% |
!! | ATTAAAAAAAAAAATACAAA+AGG | - | chr3.1:76508986-76509005 | MS.gene054945:intron | 5.0% |
!!! | TTTTAATTTTAATTTATCTA+AGG | + | chr3.1:76508973-76508992 | None:intergenic | 5.0% |
AAGTACTCCCTCACCGATGT+CGG | - | chr3.1:76507468-76507487 | MS.gene054945:intron | 50.0% | |
ACTTGAATCAGTTCCGGCTG+GGG | - | chr3.1:76508628-76508647 | MS.gene054945:intron | 50.0% | |
AGCTTTACCGACATCGGTGA+GGG | + | chr3.1:76507478-76507497 | None:intergenic | 50.0% | |
ATAGCTCAGACATGGGTTCG+TGG | + | chr3.1:76509727-76509746 | None:intergenic | 50.0% | |
ATGAAGATAGCATCCCCAGC+CGG | + | chr3.1:76508644-76508663 | None:intergenic | 50.0% | |
CACTTGAATCAGTTCCGGCT+GGG | - | chr3.1:76508627-76508646 | MS.gene054945:intron | 50.0% | |
CAGGTCAGACCATCATCATC+GGG | + | chr3.1:76507507-76507526 | None:intergenic | 50.0% | |
CATGTAGGGCAATGACATCC+CGG | + | chr3.1:76508190-76508209 | None:intergenic | 50.0% | |
CATTGTTGGCGGCTGACATA+TGG | - | chr3.1:76511224-76511243 | MS.gene054945:CDS | 50.0% | |
CCACCTTGCCATATAGCTTC+AGG | + | chr3.1:76507303-76507322 | None:intergenic | 50.0% | |
CCTGAAGCTATATGGCAAGG+TGG | - | chr3.1:76507300-76507319 | MS.gene054945:CDS | 50.0% | |
CGTGGAAGACATTGAAGCCA+TGG | - | chr3.1:76509608-76509627 | MS.gene054945:intron | 50.0% | |
GAGGCCAAACCAAATCCAAC+AGG | - | chr3.1:76509419-76509438 | MS.gene054945:intron | 50.0% | |
GCCCTACATGAGGGAAATGT+TGG | - | chr3.1:76508200-76508219 | MS.gene054945:intron | 50.0% | |
GCTCTTGTTCCCGATGATGA+TGG | - | chr3.1:76507495-76507514 | MS.gene054945:intron | 50.0% | |
GGAGAATGGGAAAGTTGCTG+TGG | - | chr3.1:76507182-76507201 | MS.gene054945:CDS | 50.0% | |
GGATGTCATTGCCCTACATG+AGG | - | chr3.1:76508190-76508209 | MS.gene054945:intron | 50.0% | |
GTTGAGGACTTGAGCAGCAA+TGG | - | chr3.1:76507438-76507457 | MS.gene054945:CDS | 50.0% | |
TGAGCAAACGGAGGATACGT+TGG | + | chr3.1:76507401-76507420 | None:intergenic | 50.0% | |
TTACTCTCATCGGTCTGCTC+CGG | + | chr3.1:76511193-76511212 | None:intergenic | 50.0% | |
TTCTCGAACGGTTCCACAGT+TGG | + | chr3.1:76508093-76508112 | None:intergenic | 50.0% | |
! | GTCATGGGTCTCGTTTGTTG+TGG | + | chr3.1:76509568-76509587 | None:intergenic | 50.0% |
! | GTTCGTGCTGCAGGTTTGTT+GGG | + | chr3.1:76509201-76509220 | None:intergenic | 50.0% |
!! | GATTTGGTTTGGCCTCGGAT+TGG | + | chr3.1:76509415-76509434 | None:intergenic | 50.0% |
!! | TGAAGCGAGGCTTGCCATTT+TGG | - | chr3.1:76507218-76507237 | MS.gene054945:CDS | 50.0% |
!! | TGCTGCAGGTTTGTTGGGTT+GGG | + | chr3.1:76509196-76509215 | None:intergenic | 50.0% |
CTCTCCATAGTCCGTCCCAA+TGG | - | chr3.1:76507354-76507373 | MS.gene054945:CDS | 55.0% | |
GAACCGTTCGAGAAGCTGCA+CGG | - | chr3.1:76508099-76508118 | MS.gene054945:intron | 55.0% | |
GAGCTTTACCGACATCGGTG+AGG | + | chr3.1:76507479-76507498 | None:intergenic | 55.0% | |
GCAAGCCTCGCTTCACTTTG+AGG | + | chr3.1:76507213-76507232 | None:intergenic | 55.0% | |
GCACTTGAATCAGTTCCGGC+TGG | - | chr3.1:76508626-76508645 | MS.gene054945:intron | 55.0% | |
GGTTCGTGCTGCAGGTTTGT+TGG | + | chr3.1:76509202-76509221 | None:intergenic | 55.0% | |
GTTGTGGTTCGATCTCAGGG+TGG | + | chr3.1:76509511-76509530 | None:intergenic | 55.0% | |
TACAAGGCTCTTCCAGTGGC+CGG | - | chr3.1:76511139-76511158 | MS.gene054945:CDS | 55.0% | |
TCCATAGTCCGTCCCAATGG+CGG | - | chr3.1:76507357-76507376 | MS.gene054945:CDS | 55.0% | |
TCTCCGTGCAGCTTCTCGAA+CGG | + | chr3.1:76508105-76508124 | None:intergenic | 55.0% | |
! | GGTTGGGTTGTGCTTGTGGT+GGG | + | chr3.1:76509180-76509199 | None:intergenic | 55.0% |
!! | GTGCTGCAGGTTTGTTGGGT+TGG | + | chr3.1:76509197-76509216 | None:intergenic | 55.0% |
!! | GTTGGGTTGGGTTGTGCTTG+TGG | + | chr3.1:76509184-76509203 | None:intergenic | 55.0% |
AACGGCCATGCTCGCAGGTA+CGG | + | chr3.1:76508048-76508067 | None:intergenic | 60.0% | |
ATAGTCCGTCCCAATGGCGG+AGG | - | chr3.1:76507360-76507379 | MS.gene054945:CDS | 60.0% | |
CGCAGTGGAGGATCCAACTG+TGG | - | chr3.1:76508077-76508096 | MS.gene054945:intron | 60.0% | |
GGGCAATGACATCCCGGACA+TGG | + | chr3.1:76508184-76508203 | None:intergenic | 60.0% | |
TCAGCGTCTCCTCCGCCATT+GGG | + | chr3.1:76507372-76507391 | None:intergenic | 60.0% | |
TCCACTGCGTCTCCCACCAA+CGG | + | chr3.1:76508066-76508085 | None:intergenic | 60.0% | |
TTCAGCGTCTCCTCCGCCAT+TGG | + | chr3.1:76507373-76507392 | None:intergenic | 60.0% | |
! | GGGTTGGGTTGTGCTTGTGG+TGG | + | chr3.1:76509181-76509200 | None:intergenic | 60.0% |
!! | ATGGGTTCGTGGCACCGATC+CGG | + | chr3.1:76509716-76509735 | None:intergenic | 60.0% |
!! | TCCGCCATTGGGACGGACTA+TGG | + | chr3.1:76507361-76507380 | None:intergenic | 60.0% |
!!! | GTTCGCGTGGTTTTGGGCCA+TGG | + | chr3.1:76509628-76509647 | None:intergenic | 60.0% |
ACGGCCATGCTCGCAGGTAC+GGG | + | chr3.1:76508047-76508066 | None:intergenic | 65.0% | |
AGGACCCGTACCTGCGAGCA+TGG | - | chr3.1:76508040-76508059 | MS.gene054945:intron | 65.0% | |
CGTCTCCTCCGCCATTGGGA+CGG | + | chr3.1:76507368-76507387 | None:intergenic | 65.0% | |
CTGCGAGCATGGCCGTTGGT+GGG | - | chr3.1:76508051-76508070 | MS.gene054945:intron | 65.0% | |
GTACCTGCGAGCATGGCCGT+TGG | - | chr3.1:76508047-76508066 | MS.gene054945:intron | 65.0% | |
TCGGTCTGCTCCGGCAACAC+CGG | + | chr3.1:76511184-76511203 | None:intergenic | 65.0% | |
! | GTTGGTGGGAGACGCAGTGG+AGG | - | chr3.1:76508065-76508084 | MS.gene054945:intron | 65.0% |
CCACCAACGGCCATGCTCGC+AGG | + | chr3.1:76508053-76508072 | None:intergenic | 70.0% | |
CCTGCGAGCATGGCCGTTGG+TGG | - | chr3.1:76508050-76508069 | MS.gene054945:intron | 70.0% | |
! | GCCGTTGGTGGGAGACGCAG+TGG | - | chr3.1:76508062-76508081 | MS.gene054945:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 76507180 | 76511384 | 76507180 | ID=MS.gene054945 |
chr3.1 | mRNA | 76507180 | 76511384 | 76507180 | ID=MS.gene054945.t1;Parent=MS.gene054945 |
chr3.1 | exon | 76511010 | 76511384 | 76511010 | ID=MS.gene054945.t1.exon1;Parent=MS.gene054945.t1 |
chr3.1 | CDS | 76511010 | 76511384 | 76511010 | ID=cds.MS.gene054945.t1;Parent=MS.gene054945.t1 |
chr3.1 | exon | 76510186 | 76510522 | 76510186 | ID=MS.gene054945.t1.exon2;Parent=MS.gene054945.t1 |
chr3.1 | CDS | 76510186 | 76510522 | 76510186 | ID=cds.MS.gene054945.t1;Parent=MS.gene054945.t1 |
chr3.1 | exon | 76509897 | 76509961 | 76509897 | ID=MS.gene054945.t1.exon3;Parent=MS.gene054945.t1 |
chr3.1 | CDS | 76509897 | 76509961 | 76509897 | ID=cds.MS.gene054945.t1;Parent=MS.gene054945.t1 |
chr3.1 | exon | 76507180 | 76507479 | 76507180 | ID=MS.gene054945.t1.exon4;Parent=MS.gene054945.t1 |
chr3.1 | CDS | 76507180 | 76507479 | 76507180 | ID=cds.MS.gene054945.t1;Parent=MS.gene054945.t1 |
Gene Sequence |
Protein sequence |