AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054945

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054945.t1 MTR_3g096050 99.441 358 2 0 1 358 1 358 0.0 741
MS.gene054945.t1 MTR_3g096070 82.402 358 40 1 1 358 1 335 0.0 600
MS.gene054945.t1 MTR_3g096050 98.473 262 4 0 1 262 1 262 0.0 533
MS.gene054945.t1 MTR_2g072790 58.790 347 142 1 12 358 9 354 5.99e-159 449
MS.gene054945.t1 MTR_3g092900 37.429 350 210 6 14 358 18 363 2.11e-71 227
MS.gene054945.t1 MTR_5g098170 36.286 350 215 5 14 358 17 363 2.71e-68 219
MS.gene054945.t1 MTR_0591s0010 36.207 348 207 7 20 358 36 377 8.46e-67 215
MS.gene054945.t1 MTR_8g068750 34.203 345 218 5 20 358 36 377 4.96e-66 213
MS.gene054945.t1 MTR_7g118320 33.913 345 219 4 20 358 21 362 5.62e-66 213
MS.gene054945.t1 MTR_8g068690 34.557 327 205 5 20 340 35 358 4.10e-63 206
MS.gene054945.t1 MTR_1g096310 36.267 375 210 11 2 358 9 372 9.54e-63 205
MS.gene054945.t1 MTR_8g068870 33.616 354 220 7 14 358 16 363 1.11e-62 204
MS.gene054945.t1 MTR_7g118300 33.523 352 228 4 10 358 27 375 1.47e-62 204
MS.gene054945.t1 MTR_7g012020 36.314 369 216 9 2 358 8 369 2.01e-62 204
MS.gene054945.t1 MTR_1g036490 35.457 361 217 9 9 358 15 370 9.50e-62 202
MS.gene054945.t1 MTR_1g036460 35.734 361 216 9 9 358 15 370 3.98e-61 201
MS.gene054945.t1 MTR_7g011900 36.658 371 212 11 2 358 9 370 1.30e-60 199
MS.gene054945.t1 MTR_7g011990 36.261 353 203 8 17 358 26 367 4.98e-60 197
MS.gene054945.t1 MTR_7g012070 34.316 373 223 9 2 358 9 375 4.56e-59 195
MS.gene054945.t1 MTR_1g036510 35.556 360 218 8 9 358 29 384 1.22e-58 194
MS.gene054945.t1 MTR_2g055940 35.246 366 219 10 3 358 6 363 2.48e-58 193
MS.gene054945.t1 MTR_7g012040 35.310 371 216 12 2 358 8 368 3.28e-58 193
MS.gene054945.t1 MTR_6g078850 34.024 338 212 5 14 343 34 368 9.79e-58 195
MS.gene054945.t1 MTR_3g021430 38.567 293 167 6 73 358 71 357 1.49e-57 191
MS.gene054945.t1 MTR_7g012090 37.288 295 170 6 73 358 87 375 5.08e-56 187
MS.gene054945.t1 MTR_3g021440 37.543 293 170 6 73 358 84 370 6.23e-56 187
MS.gene054945.t1 MTR_8g068730 32.424 330 182 7 20 343 36 330 7.62e-52 176
MS.gene054945.t1 MTR_0017s0100 33.146 356 225 9 7 355 16 365 1.19e-51 176
MS.gene054945.t1 MTR_8g068570 34.385 317 166 8 20 327 36 319 2.67e-51 173
MS.gene054945.t1 MTR_8g024160 35.606 264 167 3 95 358 68 328 4.50e-51 173
MS.gene054945.t1 MTR_4g038440 32.022 356 229 9 7 355 16 365 8.26e-48 166
MS.gene054945.t1 MTR_0079s0070 32.523 329 212 8 31 355 9 331 5.71e-47 162
MS.gene054945.t1 MTR_8g068690 34.387 253 158 4 20 266 35 285 1.71e-46 160
MS.gene054945.t1 MTR_7g012020 36.431 269 161 6 2 262 8 274 9.82e-43 150
MS.gene054945.t1 MTR_1g050220 31.138 334 170 8 17 342 6 287 6.12e-40 143
MS.gene054945.t1 MTR_8g068600 34.783 230 142 4 37 260 27 254 2.16e-39 141
MS.gene054945.t1 MTR_1g036510 35.249 261 159 6 9 261 29 287 1.42e-37 137
MS.gene054945.t1 MTR_3g083620 29.787 329 214 11 32 354 40 357 7.53e-37 136
MS.gene054945.t1 MTR_8g068740 31.660 259 137 6 20 272 36 260 2.17e-36 133
MS.gene054945.t1 MTR_1g076940 27.976 336 222 10 31 355 32 358 1.51e-35 133
MS.gene054945.t1 MTR_7g014570 28.732 355 234 11 10 357 9 351 1.69e-35 132
MS.gene054945.t1 MTR_7g012020 34.286 245 151 6 2 238 8 250 2.29e-33 124
MS.gene054945.t1 MTR_4g088340 27.647 340 221 9 29 357 7 332 1.07e-32 125
MS.gene054945.t1 MTR_4g038440 32.432 259 165 6 7 259 16 270 1.31e-32 123
MS.gene054945.t1 MTR_7g014510 29.573 328 210 10 31 350 32 346 1.78e-32 124
MS.gene054945.t1 MTR_7g024520 28.024 339 214 11 29 356 29 348 3.42e-32 124
MS.gene054945.t1 MTR_4g088345 28.955 335 223 9 29 357 30 355 5.73e-32 123
MS.gene054945.t1 MTR_4g079160 29.143 350 223 12 12 346 4 343 5.98e-32 123
MS.gene054945.t1 MTR_5g074600 27.500 320 218 8 31 343 32 344 7.26e-32 123
MS.gene054945.t1 MTR_7g024500 28.235 340 212 11 29 356 29 348 1.79e-31 122
MS.gene054945.t1 MTR_4g033015 30.172 348 221 11 24 357 23 362 4.53e-31 121
MS.gene054945.t1 MTR_5g074680 27.747 364 243 12 2 357 8 359 7.93e-31 120
MS.gene054945.t1 MTR_5g074580 28.125 352 229 12 2 343 8 345 8.01e-31 120
MS.gene054945.t1 MTR_4g088200 28.487 337 223 11 31 357 32 360 9.40e-31 120
MS.gene054945.t1 MTR_4g033200 29.885 348 222 11 24 357 23 362 6.82e-30 117
MS.gene054945.t1 MTR_8g068620 46.364 110 58 1 150 259 2 110 3.01e-28 107
MS.gene054945.t1 MTR_1g036510 33.193 238 149 6 9 238 29 264 6.43e-28 110
MS.gene054945.t1 MTR_4g088190 29.118 340 220 10 31 357 32 363 8.96e-28 112
MS.gene054945.t1 MTR_4g033150 28.319 339 223 10 31 357 32 362 2.11e-26 108
MS.gene054945.t1 MTR_5g074540 25.862 348 224 12 2 343 7 326 3.07e-26 107
MS.gene054945.t1 MTR_5g074610 27.273 319 191 10 31 343 28 311 5.65e-25 103
MS.gene054945.t1 MTR_4g033170 27.964 329 219 11 24 343 23 342 2.64e-21 94.0
MS.gene054945.t1 MTR_1g076930 26.160 237 163 7 29 259 7 237 1.75e-18 84.0
MS.gene054945.t1 MTR_4g033085 27.660 329 220 11 24 343 23 342 2.12e-18 85.5
MS.gene054945.t1 MTR_8g068760 35.000 100 64 1 259 358 135 233 6.51e-12 65.1
MS.gene054945.t1 MTR_0794s0020 28.125 224 146 8 31 245 32 249 4.51e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054945.t1 AT3G53140 57.550 351 145 1 12 358 9 359 4.45e-152 432
MS.gene054945.t1 AT5G54160 40.719 334 189 6 14 343 18 346 6.98e-76 238
MS.gene054945.t1 AT1G33030 34.985 343 214 7 23 358 10 350 4.06e-58 192
MS.gene054945.t1 AT1G51990 34.812 293 184 4 53 340 54 344 1.39e-57 191
MS.gene054945.t1 AT1G51990 35.154 293 183 4 53 340 54 344 5.65e-57 189
MS.gene054945.t1 AT1G77520 31.805 349 223 7 22 358 36 381 5.45e-53 179
MS.gene054945.t1 AT1G77530 34.091 352 211 10 22 358 36 381 3.97e-44 156
MS.gene054945.t1 AT1G21100 32.778 360 229 9 8 358 18 373 4.16e-41 148
MS.gene054945.t1 AT5G53810 33.025 324 201 8 29 339 39 359 1.29e-40 147
MS.gene054945.t1 AT1G63140 31.322 348 226 7 22 358 36 381 4.30e-40 145
MS.gene054945.t1 AT1G63140 31.322 348 226 7 22 358 56 401 8.32e-40 145
MS.gene054945.t1 AT1G21120 32.778 360 229 10 8 358 18 373 1.15e-39 144
MS.gene054945.t1 AT1G21130 32.222 360 231 9 8 358 18 373 1.30e-39 144
MS.gene054945.t1 AT1G21120 32.778 360 229 10 8 358 66 421 5.51e-39 144
MS.gene054945.t1 AT1G21110 32.222 360 231 9 8 358 18 373 8.35e-39 142
MS.gene054945.t1 AT1G76790 31.476 359 229 9 12 358 12 365 2.18e-38 140
MS.gene054945.t1 AT5G37170 38.660 194 115 4 167 358 43 234 5.13e-38 136
MS.gene054945.t1 AT5G37170 39.362 188 110 4 173 358 1 186 1.31e-37 134
MS.gene054945.t1 AT5G37170 38.660 194 115 4 167 358 143 334 6.33e-37 136
MS.gene054945.t1 AT1G62900 38.220 191 117 1 168 358 16 205 1.35e-34 126
MS.gene054945.t1 AT1G33030 34.263 251 157 6 23 266 10 259 4.25e-34 127
MS.gene054945.t1 AT1G33030 34.836 244 151 6 23 259 10 252 4.56e-34 127
MS.gene054945.t1 AT4G35160 29.752 363 234 10 1 348 15 371 6.31e-34 129
MS.gene054945.t1 AT4G35150 26.891 357 209 9 1 348 1 314 1.00e-30 119
MS.gene054945.t1 AT1G63140 32.129 249 156 7 22 259 56 302 1.15e-23 99.8
MS.gene054945.t1 AT1G21130 31.206 282 180 8 8 278 18 296 2.42e-22 95.9
MS.gene054945.t1 AT1G77530 32.314 229 140 7 22 238 36 261 2.11e-16 78.6
MS.gene054945.t1 AT1G63140 30.131 229 147 7 21 238 55 281 3.21e-14 72.8

Find 100 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCGAGGCTTGCCATTT+TGG 0.196493 3.1:-76511324 MS.gene054945:CDS
GTTGATGTTGGTGGCAATTC+TGG 0.233978 3.1:-76510284 MS.gene054945:CDS
TCCGCCATTGGGACGGACTA+TGG 0.310272 3.1:+76511184 None:intergenic
TAAAACAAACTCATTTCTTC+TGG 0.323627 3.1:+76510389 None:intergenic
AATTCAAGTACAGGCAAATA+AGG 0.328492 3.1:+76507190 None:intergenic
TGAAAGTACCTGAAGCTATA+TGG 0.371128 3.1:-76511250 MS.gene054945:CDS
CCACCTTGCCATATAGCTTC+AGG 0.378883 3.1:+76511242 None:intergenic
TTGATGCCTTTGAGTATGTT+TGG 0.379016 3.1:+76510230 None:intergenic
GCAAGCCTCGCTTCACTTTG+AGG 0.394145 3.1:+76511332 None:intergenic
AAAATTGATTCTTTGTGAAC+CGG 0.399849 3.1:-76507380 MS.gene054945:CDS
CAGGCAAATAAGGATCAATA+TGG 0.400215 3.1:+76507200 None:intergenic
TCTTTGTGAACCGGTGTTGC+CGG 0.403316 3.1:-76507371 MS.gene054945:CDS
TGGGGATGCTATCTTCATTA+AGG 0.409531 3.1:-76509896 MS.gene054945:intron
CATTGTTGGCGGCTGACATA+TGG 0.414881 3.1:-76507318 MS.gene054945:CDS
TTCAGCGTCTCCTCCGCCAT+TGG 0.420478 3.1:+76511172 None:intergenic
AAGTTGTTTGAATTCTTCTT+CGG 0.424797 3.1:+76507258 None:intergenic
TAAAAGAACAAGAGCATTGT+TGG 0.438527 3.1:-76507332 MS.gene054945:CDS
TTATTTAAACCTGATGGTGC+TGG 0.448459 3.1:+76511000 None:intergenic
AACGGCCATGCTCGCAGGTA+CGG 0.451973 3.1:+76510497 None:intergenic
TAGTAAACAATAATGGAGAA+TGG 0.453157 3.1:-76511374 None:intergenic
AGTAAACAATAATGGAGAAT+GGG 0.454231 3.1:-76511373 None:intergenic
TCAGCGTCTCCTCCGCCATT+GGG 0.454837 3.1:+76511173 None:intergenic
AATGACAATGTATAGAACTA+AGG 0.459777 3.1:-76507293 MS.gene054945:CDS
CACTTGAATCAGTTCCGGCT+GGG 0.462198 3.1:-76509915 MS.gene054945:CDS
CCTGCGAGCATGGCCGTTGG+TGG 0.463499 3.1:-76510492 MS.gene054945:CDS
AATGTGTGCAAGTTCCAAAA+TGG 0.463723 3.1:+76511310 None:intergenic
AAACAACTTGGCATTTCTGC+TGG 0.463760 3.1:-76507244 MS.gene054945:CDS
GAGAATTATGATGGCTTCAA+AGG 0.465146 3.1:-76510320 MS.gene054945:CDS
TTACTCTCATCGGTCTGCTC+CGG 0.470793 3.1:+76507352 None:intergenic
TGATGCACTTGAATCAGTTC+CGG 0.476408 3.1:-76509920 MS.gene054945:CDS
AGAATTTGAGAGGCAGAGAG+TGG 0.478385 3.1:+76511209 None:intergenic
CCACCAACGGCCATGCTCGC+AGG 0.480027 3.1:+76510492 None:intergenic
TAGTATAAGTGGTGAGCAAA+CGG 0.493082 3.1:+76511132 None:intergenic
GCATATGCATATTGCACAAA+GGG 0.496481 3.1:-76510413 MS.gene054945:CDS
CATTTATGAAATTCAAGTAC+AGG 0.499673 3.1:+76507181 None:intergenic
GAAATGTTGGAGAATTATGA+TGG 0.500624 3.1:-76510329 MS.gene054945:CDS
TACAAGGCTCTTCCAGTGGC+CGG 0.508003 3.1:-76507403 MS.gene054945:CDS
ACGGCCATGCTCGCAGGTAC+GGG 0.509344 3.1:+76510498 None:intergenic
TCTTCTGCACCTCAATATCC+AGG 0.511364 3.1:-76510185 MS.gene054945:intron
GCACTTGAATCAGTTCCGGC+TGG 0.511694 3.1:-76509916 MS.gene054945:CDS
GACTAATTACCTGGATATTG+AGG 0.516427 3.1:+76510176 None:intergenic
GGCCTTGCAAAGTTGTTACA+AGG 0.518740 3.1:-76507419 MS.gene054945:CDS
AGGTGCAGAAGAGATCATAT+CGG 0.519685 3.1:+76510196 None:intergenic
TTCTCGAACGGTTCCACAGT+TGG 0.522298 3.1:+76510452 None:intergenic
TCCAACATTTCCCTCATGTA+GGG 0.523535 3.1:+76510341 None:intergenic
TCTCCGTGCAGCTTCTCGAA+CGG 0.525123 3.1:+76510440 None:intergenic
GCCCTACATGAGGGAAATGT+TGG 0.530544 3.1:-76510342 MS.gene054945:CDS
CTGCGAGCATGGCCGTTGGT+GGG 0.530884 3.1:-76510491 MS.gene054945:CDS
TGCAGTGGACAGTGTTAACA+TGG 0.535443 3.1:-76507462 MS.gene054945:intron
TCGGTCTGCTCCGGCAACAC+CGG 0.535499 3.1:+76507361 None:intergenic
GGGCAATGACATCCCGGACA+TGG 0.544215 3.1:+76510361 None:intergenic
CAGGTCAGACCATCATCATC+GGG 0.545460 3.1:+76511038 None:intergenic
CGTCTCCTCCGCCATTGGGA+CGG 0.546520 3.1:+76511177 None:intergenic
GCTCTTGTTCCCGATGATGA+TGG 0.547808 3.1:-76511047 MS.gene054945:CDS
AGGACCCGTACCTGCGAGCA+TGG 0.558958 3.1:-76510502 MS.gene054945:CDS
ATGACAATGTATAGAACTAA+GGG 0.561414 3.1:-76507292 MS.gene054945:CDS
GGTGCAGAAGAGATCATATC+GGG 0.566072 3.1:+76510197 None:intergenic
AGCCTTGTAACAACTTTGCA+AGG 0.570449 3.1:+76507417 None:intergenic
ACAGGTCAGACCATCATCAT+CGG 0.570773 3.1:+76511037 None:intergenic
CATGTAGGGCAATGACATCC+CGG 0.570892 3.1:+76510355 None:intergenic
GCCGTTGGTGGGAGACGCAG+TGG 0.570986 3.1:-76510480 MS.gene054945:CDS
ACTTGAATCAGTTCCGGCTG+GGG 0.571520 3.1:-76509914 MS.gene054945:CDS
CTCCAACATTTCCCTCATGT+AGG 0.575549 3.1:+76510340 None:intergenic
TCCATAGTCCGTCCCAATGG+CGG 0.577664 3.1:-76511185 MS.gene054945:CDS
ACTTGAGCAGCAATGGTGAA+AGG 0.580995 3.1:-76511097 MS.gene054945:CDS
GTTGAGGACTTGAGCAGCAA+TGG 0.582872 3.1:-76511104 MS.gene054945:CDS
AGCTTTACCGACATCGGTGA+GGG 0.585301 3.1:+76511067 None:intergenic
CTCTCCATAGTCCGTCCCAA+TGG 0.588927 3.1:-76511188 MS.gene054945:CDS
AAGTACTCCCTCACCGATGT+CGG 0.589045 3.1:-76511074 MS.gene054945:CDS
GAAGAAGAATTCAAACAACT+TGG 0.589425 3.1:-76507256 MS.gene054945:CDS
GTGGAGACTCTAGTTGATGT+TGG 0.592031 3.1:-76510296 MS.gene054945:CDS
GTACCTGAAGCTATATGGCA+AGG 0.593518 3.1:-76511245 MS.gene054945:CDS
AAGAACAAGAGCATTGTTGG+CGG 0.593672 3.1:-76507329 MS.gene054945:CDS
GTTGGTGGGAGACGCAGTGG+AGG 0.598693 3.1:-76510477 MS.gene054945:CDS
CAAATAAGGATCAATATGGA+AGG 0.598974 3.1:+76507204 None:intergenic
GGATGTCATTGCCCTACATG+AGG 0.599139 3.1:-76510352 MS.gene054945:CDS
AAATATCCAAACATACTCAA+AGG 0.599530 3.1:-76510236 MS.gene054945:CDS
ATAGTCCGTCCCAATGGCGG+AGG 0.606262 3.1:-76511182 MS.gene054945:CDS
AACAAGAGCTTTACCGACAT+CGG 0.606967 3.1:+76511061 None:intergenic
TCCACTGCGTCTCCCACCAA+CGG 0.608024 3.1:+76510479 None:intergenic
ATGAAGATAGCATCCCCAGC+CGG 0.608469 3.1:+76509901 None:intergenic
TTATGATGGCTTCAAAGGTG+TGG 0.610913 3.1:-76510315 MS.gene054945:CDS
GACAGATGAAGAATTCAAGA+AGG 0.615326 3.1:-76507440 MS.gene054945:CDS
GATGTCATTGCCCTACATGA+GGG 0.616477 3.1:-76510351 MS.gene054945:CDS
TTGTTACAAGGCTCTTCCAG+TGG 0.616923 3.1:-76507407 MS.gene054945:CDS
GACTATGGAGAGAATTTGAG+AGG 0.637733 3.1:+76511199 None:intergenic
AGCATATGCATATTGCACAA+AGG 0.638121 3.1:-76510414 MS.gene054945:CDS
GAACCGTTCGAGAAGCTGCA+CGG 0.649830 3.1:-76510443 MS.gene054945:CDS
GTACCTGCGAGCATGGCCGT+TGG 0.655083 3.1:-76510495 MS.gene054945:CDS
GAGCTTTACCGACATCGGTG+AGG 0.661236 3.1:+76511066 None:intergenic
TGAGCAAACGGAGGATACGT+TGG 0.661794 3.1:+76511144 None:intergenic
GAGACTCTAGTTGATGTTGG+TGG 0.662906 3.1:-76510293 MS.gene054945:CDS
GGAGAATGGGAAAGTTGCTG+TGG 0.664770 3.1:-76511360 MS.gene054945:CDS
AGAACAGCATTAAGGGACGT+AGG 0.670135 3.1:+76511278 None:intergenic
CGCAGTGGAGGATCCAACTG+TGG 0.674969 3.1:-76510465 MS.gene054945:CDS
CCTGAAGCTATATGGCAAGG+TGG 0.693132 3.1:-76511242 MS.gene054945:CDS
TAAAGCCTCAAAGTGAAGCG+AGG 0.698513 3.1:-76511337 MS.gene054945:CDS
TATAAGTGGTGAGCAAACGG+AGG 0.715321 3.1:+76511135 None:intergenic
TATATAGGTATAACACACGT+CGG 0.727621 3.1:-76509946 MS.gene054945:intron
ATAGGTATAACACACGTCGG+TGG 0.737739 3.1:-76509943 MS.gene054945:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTACATCATAATTTA+AGG - chr3.1:76510261-76510280 MS.gene054945:CDS 10.0%
!! AAATTTACATCATAATTTAA+GGG - chr3.1:76510262-76510281 MS.gene054945:CDS 10.0%
!! ACAGTTATTATAATTATTAT+TGG - chr3.1:76507701-76507720 MS.gene054945:intron 10.0%
!! CAGTTATTATAATTATTATT+GGG - chr3.1:76507702-76507721 MS.gene054945:intron 10.0%
!!! ATAACCAAAATTTTATTATT+AGG - chr3.1:76508802-76508821 MS.gene054945:intron 10.0%
!!! TTTTTTAAATTAGACTAATT+AGG + chr3.1:76508420-76508439 None:intergenic 10.0%
!! AAGAAGAAAAAAAAGATTAA+TGG - chr3.1:76507660-76507679 MS.gene054945:intron 15.0%
!! AATTTACATCATAATTTAAG+GGG - chr3.1:76510263-76510282 MS.gene054945:CDS 15.0%
!! TCCTTAAAAAAATATATTAG+TGG - chr3.1:76508476-76508495 MS.gene054945:intron 15.0%
!! TTAGACTATTATAACAATAA+GGG - chr3.1:76509804-76509823 MS.gene054945:intron 15.0%
!!! AAAGTATCAAATGATATTTT+TGG + chr3.1:76510904-76510923 None:intergenic 15.0%
!!! ACTTACTTTTTTGTTTTTTT+GGG - chr3.1:76508909-76508928 MS.gene054945:intron 15.0%
!!! CTAATATATTTTTTTAAGGA+TGG + chr3.1:76508476-76508495 None:intergenic 15.0%
!!! TACTCCTAATAATAAAATTT+TGG + chr3.1:76508809-76508828 None:intergenic 15.0%
!!! TACTTACTTTTTTGTTTTTT+TGG - chr3.1:76508908-76508927 MS.gene054945:intron 15.0%
!!! TATTTTTTATAAGAAACTAG+CGG + chr3.1:76510464-76510483 None:intergenic 15.0%
!!! TCCACTAATATATTTTTTTA+AGG + chr3.1:76508480-76508499 None:intergenic 15.0%
!!! TTCAAATTATTTAACTTTTG+TGG - chr3.1:76508569-76508588 MS.gene054945:intron 15.0%
!! AAAAAAAAATACAAAAGGTC+AGG - chr3.1:76508991-76509010 MS.gene054945:intron 20.0%
!! AAAAAAAATACAAAAGGTCA+GGG - chr3.1:76508992-76509011 MS.gene054945:intron 20.0%
!! AATTTAATAAAATTAGTCCG+TGG + chr3.1:76508529-76508548 None:intergenic 20.0%
!! ATAAAAAAGTAAGTAGATAG+TGG + chr3.1:76508784-76508803 None:intergenic 20.0%
!! ATAAGTTTATTTAAACCTGA+TGG + chr3.1:76507551-76507570 None:intergenic 20.0%
!! GTAAAATAAGCAAGATTATA+AGG + chr3.1:76510853-76510872 None:intergenic 20.0%
!! GTTAGACTATTATAACAATA+AGG - chr3.1:76509803-76509822 MS.gene054945:intron 20.0%
!! TACAAAATCAACTTATAAGT+CGG + chr3.1:76507870-76507889 None:intergenic 20.0%
!! TAGACTATTATAACAATAAG+GGG - chr3.1:76509805-76509824 MS.gene054945:intron 20.0%
!! TATAATAACTGTGTATTTGT+TGG + chr3.1:76507693-76507712 None:intergenic 20.0%
!! TATGTTTGAACATTAGTTAT+TGG + chr3.1:76508847-76508866 None:intergenic 20.0%
!!! AAAATATTTTGGAGATAAGT+AGG + chr3.1:76508699-76508718 None:intergenic 20.0%
!!! ACGAACTTGTTATAATATAT+GGG + chr3.1:76507931-76507950 None:intergenic 20.0%
!!! AGGTAATTAGTCTATTTTTT+GGG - chr3.1:76508377-76508396 MS.gene054945:intron 20.0%
!!! GATACTTTAGATTTTCTTTA+AGG - chr3.1:76510916-76510935 MS.gene054945:intron 20.0%
!!! GCTAAAGTTGAAAAATATTT+TGG + chr3.1:76508710-76508729 None:intergenic 20.0%
!!! TAATGATGATCTTGTTTTTT+TGG + chr3.1:76510569-76510588 None:intergenic 20.0%
!!! TAATTTTGTGGAAATGAATA+TGG - chr3.1:76507743-76507762 MS.gene054945:intron 20.0%
!!! TATATTTTTTTAAGGATGGT+CGG + chr3.1:76508472-76508491 None:intergenic 20.0%
!!! TTTTAATTTATCTAAGGTGT+TGG + chr3.1:76508967-76508986 None:intergenic 20.0%
!!! TTTTTTTTCTCTCTTTTCAT+TGG - chr3.1:76509873-76509892 MS.gene054945:intron 20.0%
! AAAAATCAGACAAGGAAAAA+GGG - chr3.1:76509222-76509241 MS.gene054945:intron 25.0%
! AAATATCCAAACATACTCAA+AGG - chr3.1:76508306-76508325 MS.gene054945:intron 25.0%
! AAGCAAGATTATAAGGAATA+TGG + chr3.1:76510846-76510865 None:intergenic 25.0%
! AAGTTGTTTGAATTCTTCTT+CGG + chr3.1:76511287-76511306 None:intergenic 25.0%
! AATGACAATGTATAGAACTA+AGG - chr3.1:76511249-76511268 MS.gene054945:CDS 25.0%
! ATGACAATGTATAGAACTAA+GGG - chr3.1:76511250-76511269 MS.gene054945:CDS 25.0%
! CAAAAAATAGACTAATTACC+TGG + chr3.1:76508378-76508397 None:intergenic 25.0%
! CATTTATGAAATTCAAGTAC+AGG + chr3.1:76511364-76511383 None:intergenic 25.0%
! CTCAACAAAAATAGTATAAG+TGG + chr3.1:76507424-76507443 None:intergenic 25.0%
! GTTAGATTGACAAATATTAG+AGG - chr3.1:76508445-76508464 MS.gene054945:intron 25.0%
! TAAAACAAACTCATTTCTTC+TGG + chr3.1:76508156-76508175 None:intergenic 25.0%
! TCAAAAAAAATCAAACGTAC+AGG - chr3.1:76508020-76508039 MS.gene054945:intron 25.0%
! TTAAATCTTGGTTTCTATGA+CGG + chr3.1:76509145-76509164 None:intergenic 25.0%
! TTCATAGTACTCACTAAATT+CGG - chr3.1:76510797-76510816 MS.gene054945:intron 25.0%
!! ATAAGTTAAGTTGTCTCATT+TGG + chr3.1:76509847-76509866 None:intergenic 25.0%
!! GATCTTTCTTTTCACTTATT+TGG + chr3.1:76510495-76510514 None:intergenic 25.0%
!! TAGCAACCATTTTGTATTAT+GGG + chr3.1:76508876-76508895 None:intergenic 25.0%
!! TTAGCAACCATTTTGTATTA+TGG + chr3.1:76508877-76508896 None:intergenic 25.0%
!! TTTTCATTGGTCAAAAACAA+TGG - chr3.1:76509886-76509905 MS.gene054945:intron 25.0%
!!! ACTAAGAGTACTTAATTTTG+TGG - chr3.1:76507731-76507750 MS.gene054945:intron 25.0%
!!! ATTGGACAATTTTATTTGGT+TGG + chr3.1:76509397-76509416 None:intergenic 25.0%
!!! CACGAACTTGTTATAATATA+TGG + chr3.1:76507932-76507951 None:intergenic 25.0%
!!! CACTTATACTATTTTTGTTG+AGG - chr3.1:76507422-76507441 MS.gene054945:CDS 25.0%
!!! CAGGTAATTAGTCTATTTTT+TGG - chr3.1:76508376-76508395 MS.gene054945:intron 25.0%
!!! CATATCTCTATTTTTGAGAA+GGG + chr3.1:76508756-76508775 None:intergenic 25.0%
!!! GTATAATTATTGTTTTGCAG+TGG - chr3.1:76511065-76511084 MS.gene054945:CDS 25.0%
!!! TCATATCTCTATTTTTGAGA+AGG + chr3.1:76508757-76508776 None:intergenic 25.0%
!!! TTGGACAATTTTATTTGGTT+GGG + chr3.1:76509396-76509415 None:intergenic 25.0%
!!! TTGTTTTATTTGTGACAATG+AGG - chr3.1:76510171-76510190 MS.gene054945:intron 25.0%
AAAATCAACTTATAAGTCGG+AGG + chr3.1:76507867-76507886 None:intergenic 30.0%
AAATAAAATTGTCCAATCCG+AGG - chr3.1:76509400-76509419 MS.gene054945:intron 30.0%
AACCAAAAAACTAACATGGT+CGG + chr3.1:76508503-76508522 None:intergenic 30.0%
AATTCAAGTACAGGCAAATA+AGG + chr3.1:76511355-76511374 None:intergenic 30.0%
AGACTAATTAGGTTCCAAAA+TGG + chr3.1:76508409-76508428 None:intergenic 30.0%
ATAATACAACCAACTCAAAG+GGG - chr3.1:76509085-76509104 MS.gene054945:intron 30.0%
CAAAAATCAGACAAGGAAAA+AGG - chr3.1:76509221-76509240 MS.gene054945:intron 30.0%
CAAATAAGGATCAATATGGA+AGG + chr3.1:76511341-76511360 None:intergenic 30.0%
CAGTATATTATGCAGTACTT+CGG + chr3.1:76509770-76509789 None:intergenic 30.0%
GAAATGTTGGAGAATTATGA+TGG - chr3.1:76508213-76508232 MS.gene054945:intron 30.0%
GAAGAAGAATTCAAACAACT+TGG - chr3.1:76511286-76511305 MS.gene054945:CDS 30.0%
GACAAACCAAAAAACTAACA+TGG + chr3.1:76508507-76508526 None:intergenic 30.0%
GAGGAAATCATATCTTACTA+TGG + chr3.1:76508734-76508753 None:intergenic 30.0%
GATAATACAACCAACTCAAA+GGG - chr3.1:76509084-76509103 MS.gene054945:intron 30.0%
GTCATAGAAACCAAGATTTA+AGG - chr3.1:76509144-76509163 MS.gene054945:intron 30.0%
TAAATCTTGGTTTCTATGAC+GGG + chr3.1:76509144-76509163 None:intergenic 30.0%
TATATAGGTATAACACACGT+CGG - chr3.1:76508596-76508615 MS.gene054945:intron 30.0%
TATTCGTTCACCTTAAATCT+TGG + chr3.1:76509157-76509176 None:intergenic 30.0%
TTCGATCACATCTAATAGTA+CGG + chr3.1:76507781-76507800 None:intergenic 30.0%
! AACTTTTGTGGCATGTATAT+AGG - chr3.1:76508581-76508600 MS.gene054945:intron 30.0%
! CAACTAAATCTAAAGCTACA+CGG - chr3.1:76509446-76509465 MS.gene054945:intron 30.0%
! CTTTTTCCTTGTCTGATTTT+TGG + chr3.1:76509223-76509242 None:intergenic 30.0%
! TCTTGTTCTTTTACTCTCAT+CGG + chr3.1:76511203-76511222 None:intergenic 30.0%
!! CATTTTGAGAACAGCATTAA+GGG + chr3.1:76507274-76507293 None:intergenic 30.0%
!! TAAAAGAACAAGAGCATTGT+TGG - chr3.1:76511210-76511229 MS.gene054945:CDS 30.0%
!! TCATTTTGAGAACAGCATTA+AGG + chr3.1:76507275-76507294 None:intergenic 30.0%
!! TCGGATTGGACAATTTTATT+TGG + chr3.1:76509401-76509420 None:intergenic 30.0%
!! TGGACAATTTTATTTGGTTG+GGG + chr3.1:76509395-76509414 None:intergenic 30.0%
!!! AAGTTTTAAACCAACCAGAA+AGG - chr3.1:76509062-76509081 MS.gene054945:intron 30.0%
!!! CTGGTTGGTTTAAAACTTTT+TGG + chr3.1:76509060-76509079 None:intergenic 30.0%
!!! TTAGTTTTTTGGTTTGTCCA+CGG - chr3.1:76508509-76508528 MS.gene054945:intron 30.0%
AAATTGGATAGACAGCTTTG+TGG - chr3.1:76510431-76510450 MS.gene054945:CDS 35.0%
AACTCAGAATATATCCGGAT+CGG - chr3.1:76509699-76509718 MS.gene054945:intron 35.0%
AATGTGTGCAAGTTCCAAAA+TGG + chr3.1:76507235-76507254 None:intergenic 35.0%
ACCCAAACTCAGAATATATC+CGG - chr3.1:76509694-76509713 MS.gene054945:intron 35.0%
ACGTGTTCAATACAATCAAG+TGG - chr3.1:76510675-76510694 MS.gene054945:intron 35.0%
AGCATATGCATATTGCACAA+AGG - chr3.1:76508128-76508147 MS.gene054945:intron 35.0%
ATCCGGATATATTCTGAGTT+TGG + chr3.1:76509699-76509718 None:intergenic 35.0%
CAGGCAAATAAGGATCAATA+TGG + chr3.1:76511345-76511364 None:intergenic 35.0%
CATCAGCCCATAATACAAAA+TGG - chr3.1:76508867-76508886 MS.gene054945:intron 35.0%
CTGAAAACTAGCTGACAATA+GGG - chr3.1:76510710-76510729 MS.gene054945:intron 35.0%
GACAGATGAAGAATTCAAGA+AGG - chr3.1:76511102-76511121 MS.gene054945:CDS 35.0%
GACTAATTACCTGGATATTG+AGG + chr3.1:76508369-76508388 None:intergenic 35.0%
GAGAATTATGATGGCTTCAA+AGG - chr3.1:76508222-76508241 MS.gene054945:intron 35.0%
GCATATGCATATTGCACAAA+GGG - chr3.1:76508129-76508148 MS.gene054945:intron 35.0%
GGATAATACAACCAACTCAA+AGG - chr3.1:76509083-76509102 MS.gene054945:intron 35.0%
GTAATAGAAAACTCGTGTAG+TGG - chr3.1:76510143-76510162 MS.gene054945:intron 35.0%
GTTGGTTGTATTATCCTTTC+TGG + chr3.1:76509079-76509098 None:intergenic 35.0%
TACACGGTTTAATCTCAACA+AGG - chr3.1:76509462-76509481 MS.gene054945:intron 35.0%
TAGTATAAGTGGTGAGCAAA+CGG + chr3.1:76507413-76507432 None:intergenic 35.0%
TATTATGCAGTACTTCGGTT+TGG + chr3.1:76509765-76509784 None:intergenic 35.0%
TCCAGTCTCTAACTTGATTT+GGG + chr3.1:76509267-76509286 None:intergenic 35.0%
TCCGGATATATTCTGAGTTT+GGG + chr3.1:76509698-76509717 None:intergenic 35.0%
TTCCAGTCTCTAACTTGATT+TGG + chr3.1:76509268-76509287 None:intergenic 35.0%
TTGATGCCTTTGAGTATGTT+TGG + chr3.1:76508315-76508334 None:intergenic 35.0%
TTGATTTATCCCCTTTGAGT+TGG + chr3.1:76509097-76509116 None:intergenic 35.0%
! GTTGTATTATCCTTTCTGGT+TGG + chr3.1:76509075-76509094 None:intergenic 35.0%
! TTATTTAAACCTGATGGTGC+TGG + chr3.1:76507545-76507564 None:intergenic 35.0%
!! ATTTATCTAAGGTGTTGGAG+TGG + chr3.1:76508962-76508981 None:intergenic 35.0%
!! CGTGTAGCTTTAGATTTAGT+TGG + chr3.1:76509448-76509467 None:intergenic 35.0%
!! TGAAAGTACCTGAAGCTATA+TGG - chr3.1:76507292-76507311 MS.gene054945:CDS 35.0%
!! TTCAGACTTACTTGCTTTTG+TGG + chr3.1:76509544-76509563 None:intergenic 35.0%
!! TTGTTTTATGCTTCCATGTC+CGG - chr3.1:76508168-76508187 MS.gene054945:intron 35.0%
!! TTTATCTAAGGTGTTGGAGT+GGG + chr3.1:76508961-76508980 None:intergenic 35.0%
!!! ATCTCTATTTTTGAGAAGGG+AGG + chr3.1:76508753-76508772 None:intergenic 35.0%
!!! TTGTGGTGGTTTTTTTGTTG+TGG + chr3.1:76509527-76509546 None:intergenic 35.0%
!!! TTTTTGGGTCACTACCATTT+TGG - chr3.1:76508392-76508411 MS.gene054945:intron 35.0%
AAACAACTTGGCATTTCTGC+TGG - chr3.1:76511298-76511317 MS.gene054945:CDS 40.0%
AACAACATGGAAGCTTGTCA+TGG + chr3.1:76509584-76509603 None:intergenic 40.0%
AACAAGAGCTTTACCGACAT+CGG + chr3.1:76507484-76507503 None:intergenic 40.0%
AATCAGACAAGGAAAAAGGG+TGG - chr3.1:76509225-76509244 MS.gene054945:intron 40.0%
ACAACATGGAAGCTTGTCAT+GGG + chr3.1:76509583-76509602 None:intergenic 40.0%
ACGGTTTAATCTCAACAAGG+TGG - chr3.1:76509465-76509484 MS.gene054945:intron 40.0%
AGGTGCAGAAGAGATCATAT+CGG + chr3.1:76508349-76508368 None:intergenic 40.0%
CACGAACCAAAAATCAGACA+AGG - chr3.1:76509214-76509233 MS.gene054945:intron 40.0%
GACTATGGAGAGAATTTGAG+AGG + chr3.1:76507346-76507365 None:intergenic 40.0%
GCTGAAAACTAGCTGACAAT+AGG - chr3.1:76510709-76510728 MS.gene054945:intron 40.0%
GGATATATTCTGAGTTTGGG+TGG + chr3.1:76509695-76509714 None:intergenic 40.0%
GGTTGCTCATAAGTTAGCAA+AGG + chr3.1:76510739-76510758 None:intergenic 40.0%
TACAATCAAGTGGCTCAACT+AGG - chr3.1:76510685-76510704 MS.gene054945:intron 40.0%
TCCAACATTTCCCTCATGTA+GGG + chr3.1:76508204-76508223 None:intergenic 40.0%
TCCCAAATCAAGTTAGAGAC+TGG - chr3.1:76509263-76509282 MS.gene054945:intron 40.0%
TCTTCCACGATTCAACAACA+TGG + chr3.1:76509597-76509616 None:intergenic 40.0%
TGATGCACTTGAATCAGTTC+CGG - chr3.1:76508622-76508641 MS.gene054945:intron 40.0%
TGCTCATAAGTTAGCAAAGG+TGG + chr3.1:76510736-76510755 None:intergenic 40.0%
TGGGGATGCTATCTTCATTA+AGG - chr3.1:76508646-76508665 MS.gene054945:intron 40.0%
TTATGATGGCTTCAAAGGTG+TGG - chr3.1:76508227-76508246 MS.gene054945:intron 40.0%
! AGATTTAGTTGGCTTCCTGT+TGG + chr3.1:76509437-76509456 None:intergenic 40.0%
! AGCCTTGTAACAACTTTGCA+AGG + chr3.1:76511128-76511147 None:intergenic 40.0%
! GAGATTGATAGCTCAGACAT+GGG + chr3.1:76509734-76509753 None:intergenic 40.0%
! GCTTCTGTGTCATTATGACT+TGG + chr3.1:76509321-76509340 None:intergenic 40.0%
! TGAGATTGATAGCTCAGACA+TGG + chr3.1:76509735-76509754 None:intergenic 40.0%
! TGTTTTATGCTTCCATGTCC+GGG - chr3.1:76508169-76508188 MS.gene054945:intron 40.0%
! TTTGTTGTGGTTCGATCTCA+GGG + chr3.1:76509514-76509533 None:intergenic 40.0%
!! AAGAACAAGAGCATTGTTGG+CGG - chr3.1:76511213-76511232 MS.gene054945:CDS 40.0%
!! AGACTTACTTGCTTTTGTGG+TGG + chr3.1:76509541-76509560 None:intergenic 40.0%
!! TTTTGTTGTGGTTCGATCTC+AGG + chr3.1:76509515-76509534 None:intergenic 40.0%
!!! GACCGACCATGTTAGTTTTT+TGG - chr3.1:76508498-76508517 MS.gene054945:intron 40.0%
AACTGTTACTGTTGTTCGCG+TGG + chr3.1:76509641-76509660 None:intergenic 45.0%
ACAGGTCAGACCATCATCAT+CGG + chr3.1:76507508-76507527 None:intergenic 45.0%
ACTTGAGCAGCAATGGTGAA+AGG - chr3.1:76507445-76507464 MS.gene054945:CDS 45.0%
AGAACAGCATTAAGGGACGT+AGG + chr3.1:76507267-76507286 None:intergenic 45.0%
AGAATTTGAGAGGCAGAGAG+TGG + chr3.1:76507336-76507355 None:intergenic 45.0%
AGTTAGAGACTGGAACGAGT+TGG - chr3.1:76509273-76509292 MS.gene054945:intron 45.0%
ATAGGTATAACACACGTCGG+TGG - chr3.1:76508599-76508618 MS.gene054945:intron 45.0%
CAGGGTGGCTTATGTATTCA+TGG + chr3.1:76509496-76509515 None:intergenic 45.0%
CTCCAACATTTCCCTCATGT+AGG + chr3.1:76508205-76508224 None:intergenic 45.0%
CTGGACGAAAAATGATGCAC+AGG + chr3.1:76507526-76507545 None:intergenic 45.0%
GATGTCATTGCCCTACATGA+GGG - chr3.1:76508191-76508210 MS.gene054945:intron 45.0%
GCTTCCATGTTGTTGAATCG+TGG - chr3.1:76509590-76509609 MS.gene054945:intron 45.0%
GGCCTTGCAAAGTTGTTACA+AGG - chr3.1:76511123-76511142 MS.gene054945:CDS 45.0%
GGTGCAGAAGAGATCATATC+GGG + chr3.1:76508348-76508367 None:intergenic 45.0%
GGTGGCTTATGTATTCATGG+TGG + chr3.1:76509493-76509512 None:intergenic 45.0%
GTACCTGAAGCTATATGGCA+AGG - chr3.1:76507297-76507316 MS.gene054945:CDS 45.0%
GTTAGAGACTGGAACGAGTT+GGG - chr3.1:76509274-76509293 MS.gene054945:intron 45.0%
TAAAGCCTCAAAGTGAAGCG+AGG - chr3.1:76507205-76507224 MS.gene054945:CDS 45.0%
TATAAGTGGTGAGCAAACGG+AGG + chr3.1:76507410-76507429 None:intergenic 45.0%
TCTTCTGCACCTCAATATCC+AGG - chr3.1:76508357-76508376 MS.gene054945:intron 45.0%
TGCACGAAGACAAGCAAATG+AGG + chr3.1:76510760-76510779 None:intergenic 45.0%
TGCAGTGGACAGTGTTAACA+TGG - chr3.1:76511080-76511099 MS.gene054945:CDS 45.0%
TTAGAGACTGGAACGAGTTG+GGG - chr3.1:76509275-76509294 MS.gene054945:intron 45.0%
TTCTGCAACACACACAACGA+CGG - chr3.1:76509659-76509678 MS.gene054945:intron 45.0%
TTGTTACAAGGCTCTTCCAG+TGG - chr3.1:76511135-76511154 MS.gene054945:CDS 45.0%
! ACTGTTGTTCGCGTGGTTTT+GGG + chr3.1:76509634-76509653 None:intergenic 45.0%
! AGAATCAATTTTCCGGCCAC+TGG + chr3.1:76511154-76511173 None:intergenic 45.0%
! AGTTGGCTTCCTGTTGGATT+TGG + chr3.1:76509431-76509450 None:intergenic 45.0%
! ATTTTTCGTCCAGCACCATC+AGG - chr3.1:76507533-76507552 MS.gene054945:intron 45.0%
! GAGACTCTAGTTGATGTTGG+TGG - chr3.1:76508249-76508268 MS.gene054945:intron 45.0%
! GCTTCCTGTTGGATTTGGTT+TGG + chr3.1:76509426-76509445 None:intergenic 45.0%
! GTGGAGACTCTAGTTGATGT+TGG - chr3.1:76508246-76508265 MS.gene054945:intron 45.0%
! TACTGTTGTTCGCGTGGTTT+TGG + chr3.1:76509635-76509654 None:intergenic 45.0%
! TGGGGTTGATCACAACTAGT+TGG + chr3.1:76509377-76509396 None:intergenic 45.0%
!! GTTGATGTTGGTGGCAATTC+TGG - chr3.1:76508258-76508277 MS.gene054945:intron 45.0%
!! TGTTGGATTTGGTTTGGCCT+CGG + chr3.1:76509420-76509439 None:intergenic 45.0%
!!! TGATTTTTGGTTCGTGCTGC+AGG + chr3.1:76509210-76509229 None:intergenic 45.0%
!! AAATACAAAAAAAAAAAAAT+TGG - chr3.1:76510415-76510434 MS.gene054945:CDS 5.0%
!! ATTAAAAAAAAAAATACAAA+AGG - chr3.1:76508986-76509005 MS.gene054945:intron 5.0%
!!! TTTTAATTTTAATTTATCTA+AGG + chr3.1:76508973-76508992 None:intergenic 5.0%
AAGTACTCCCTCACCGATGT+CGG - chr3.1:76507468-76507487 MS.gene054945:intron 50.0%
ACTTGAATCAGTTCCGGCTG+GGG - chr3.1:76508628-76508647 MS.gene054945:intron 50.0%
AGCTTTACCGACATCGGTGA+GGG + chr3.1:76507478-76507497 None:intergenic 50.0%
ATAGCTCAGACATGGGTTCG+TGG + chr3.1:76509727-76509746 None:intergenic 50.0%
ATGAAGATAGCATCCCCAGC+CGG + chr3.1:76508644-76508663 None:intergenic 50.0%
CACTTGAATCAGTTCCGGCT+GGG - chr3.1:76508627-76508646 MS.gene054945:intron 50.0%
CAGGTCAGACCATCATCATC+GGG + chr3.1:76507507-76507526 None:intergenic 50.0%
CATGTAGGGCAATGACATCC+CGG + chr3.1:76508190-76508209 None:intergenic 50.0%
CATTGTTGGCGGCTGACATA+TGG - chr3.1:76511224-76511243 MS.gene054945:CDS 50.0%
CCACCTTGCCATATAGCTTC+AGG + chr3.1:76507303-76507322 None:intergenic 50.0%
CCTGAAGCTATATGGCAAGG+TGG - chr3.1:76507300-76507319 MS.gene054945:CDS 50.0%
CGTGGAAGACATTGAAGCCA+TGG - chr3.1:76509608-76509627 MS.gene054945:intron 50.0%
GAGGCCAAACCAAATCCAAC+AGG - chr3.1:76509419-76509438 MS.gene054945:intron 50.0%
GCCCTACATGAGGGAAATGT+TGG - chr3.1:76508200-76508219 MS.gene054945:intron 50.0%
GCTCTTGTTCCCGATGATGA+TGG - chr3.1:76507495-76507514 MS.gene054945:intron 50.0%
GGAGAATGGGAAAGTTGCTG+TGG - chr3.1:76507182-76507201 MS.gene054945:CDS 50.0%
GGATGTCATTGCCCTACATG+AGG - chr3.1:76508190-76508209 MS.gene054945:intron 50.0%
GTTGAGGACTTGAGCAGCAA+TGG - chr3.1:76507438-76507457 MS.gene054945:CDS 50.0%
TGAGCAAACGGAGGATACGT+TGG + chr3.1:76507401-76507420 None:intergenic 50.0%
TTACTCTCATCGGTCTGCTC+CGG + chr3.1:76511193-76511212 None:intergenic 50.0%
TTCTCGAACGGTTCCACAGT+TGG + chr3.1:76508093-76508112 None:intergenic 50.0%
! GTCATGGGTCTCGTTTGTTG+TGG + chr3.1:76509568-76509587 None:intergenic 50.0%
! GTTCGTGCTGCAGGTTTGTT+GGG + chr3.1:76509201-76509220 None:intergenic 50.0%
!! GATTTGGTTTGGCCTCGGAT+TGG + chr3.1:76509415-76509434 None:intergenic 50.0%
!! TGAAGCGAGGCTTGCCATTT+TGG - chr3.1:76507218-76507237 MS.gene054945:CDS 50.0%
!! TGCTGCAGGTTTGTTGGGTT+GGG + chr3.1:76509196-76509215 None:intergenic 50.0%
CTCTCCATAGTCCGTCCCAA+TGG - chr3.1:76507354-76507373 MS.gene054945:CDS 55.0%
GAACCGTTCGAGAAGCTGCA+CGG - chr3.1:76508099-76508118 MS.gene054945:intron 55.0%
GAGCTTTACCGACATCGGTG+AGG + chr3.1:76507479-76507498 None:intergenic 55.0%
GCAAGCCTCGCTTCACTTTG+AGG + chr3.1:76507213-76507232 None:intergenic 55.0%
GCACTTGAATCAGTTCCGGC+TGG - chr3.1:76508626-76508645 MS.gene054945:intron 55.0%
GGTTCGTGCTGCAGGTTTGT+TGG + chr3.1:76509202-76509221 None:intergenic 55.0%
GTTGTGGTTCGATCTCAGGG+TGG + chr3.1:76509511-76509530 None:intergenic 55.0%
TACAAGGCTCTTCCAGTGGC+CGG - chr3.1:76511139-76511158 MS.gene054945:CDS 55.0%
TCCATAGTCCGTCCCAATGG+CGG - chr3.1:76507357-76507376 MS.gene054945:CDS 55.0%
TCTCCGTGCAGCTTCTCGAA+CGG + chr3.1:76508105-76508124 None:intergenic 55.0%
! GGTTGGGTTGTGCTTGTGGT+GGG + chr3.1:76509180-76509199 None:intergenic 55.0%
!! GTGCTGCAGGTTTGTTGGGT+TGG + chr3.1:76509197-76509216 None:intergenic 55.0%
!! GTTGGGTTGGGTTGTGCTTG+TGG + chr3.1:76509184-76509203 None:intergenic 55.0%
AACGGCCATGCTCGCAGGTA+CGG + chr3.1:76508048-76508067 None:intergenic 60.0%
ATAGTCCGTCCCAATGGCGG+AGG - chr3.1:76507360-76507379 MS.gene054945:CDS 60.0%
CGCAGTGGAGGATCCAACTG+TGG - chr3.1:76508077-76508096 MS.gene054945:intron 60.0%
GGGCAATGACATCCCGGACA+TGG + chr3.1:76508184-76508203 None:intergenic 60.0%
TCAGCGTCTCCTCCGCCATT+GGG + chr3.1:76507372-76507391 None:intergenic 60.0%
TCCACTGCGTCTCCCACCAA+CGG + chr3.1:76508066-76508085 None:intergenic 60.0%
TTCAGCGTCTCCTCCGCCAT+TGG + chr3.1:76507373-76507392 None:intergenic 60.0%
! GGGTTGGGTTGTGCTTGTGG+TGG + chr3.1:76509181-76509200 None:intergenic 60.0%
!! ATGGGTTCGTGGCACCGATC+CGG + chr3.1:76509716-76509735 None:intergenic 60.0%
!! TCCGCCATTGGGACGGACTA+TGG + chr3.1:76507361-76507380 None:intergenic 60.0%
!!! GTTCGCGTGGTTTTGGGCCA+TGG + chr3.1:76509628-76509647 None:intergenic 60.0%
ACGGCCATGCTCGCAGGTAC+GGG + chr3.1:76508047-76508066 None:intergenic 65.0%
AGGACCCGTACCTGCGAGCA+TGG - chr3.1:76508040-76508059 MS.gene054945:intron 65.0%
CGTCTCCTCCGCCATTGGGA+CGG + chr3.1:76507368-76507387 None:intergenic 65.0%
CTGCGAGCATGGCCGTTGGT+GGG - chr3.1:76508051-76508070 MS.gene054945:intron 65.0%
GTACCTGCGAGCATGGCCGT+TGG - chr3.1:76508047-76508066 MS.gene054945:intron 65.0%
TCGGTCTGCTCCGGCAACAC+CGG + chr3.1:76511184-76511203 None:intergenic 65.0%
! GTTGGTGGGAGACGCAGTGG+AGG - chr3.1:76508065-76508084 MS.gene054945:intron 65.0%
CCACCAACGGCCATGCTCGC+AGG + chr3.1:76508053-76508072 None:intergenic 70.0%
CCTGCGAGCATGGCCGTTGG+TGG - chr3.1:76508050-76508069 MS.gene054945:intron 70.0%
! GCCGTTGGTGGGAGACGCAG+TGG - chr3.1:76508062-76508081 MS.gene054945:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 76507180 76511384 76507180 ID=MS.gene054945
chr3.1 mRNA 76507180 76511384 76507180 ID=MS.gene054945.t1;Parent=MS.gene054945
chr3.1 exon 76511010 76511384 76511010 ID=MS.gene054945.t1.exon1;Parent=MS.gene054945.t1
chr3.1 CDS 76511010 76511384 76511010 ID=cds.MS.gene054945.t1;Parent=MS.gene054945.t1
chr3.1 exon 76510186 76510522 76510186 ID=MS.gene054945.t1.exon2;Parent=MS.gene054945.t1
chr3.1 CDS 76510186 76510522 76510186 ID=cds.MS.gene054945.t1;Parent=MS.gene054945.t1
chr3.1 exon 76509897 76509961 76509897 ID=MS.gene054945.t1.exon3;Parent=MS.gene054945.t1
chr3.1 CDS 76509897 76509961 76509897 ID=cds.MS.gene054945.t1;Parent=MS.gene054945.t1
chr3.1 exon 76507180 76507479 76507180 ID=MS.gene054945.t1.exon4;Parent=MS.gene054945.t1
chr3.1 CDS 76507180 76507479 76507180 ID=cds.MS.gene054945.t1;Parent=MS.gene054945.t1
Gene Sequence

>MS.gene054945

ATGGAGAATGGGAAAGTTGCTGTGGTAAAGCCTCAAAGTGAAGCGAGGCTTGCCATTTTGGAACTTGCACACATTATGAGTGTTCCTACGTCCCTTAATGCTGTTCTCAAAATGAAAGTACCTGAAGCTATATGGCAAGGTGGAAAGAACACTCCACTCTCTGCCTCTCAAATTCTCTCCATAGTCCGTCCCAATGGCGGAGGAGACGCTGAAAATCTCCAACGTATCCTCCGTTTGCTCACCACTTATACTATTTTTGTTGAGGACTTGAGCAGCAATGGTGAAAGGAAGTACTCCCTCACCGATGTCGGTAAAGCTCTTGTTCCCGATGATGATGGTCTGACCTGTGCATCATTTTTCGTCCAGCACCATCAGGTTTAAATAAACTTATATACAAATGTTTTTTCTTTTTTATGTTTCTTAAATATAAAATATATAACAAAATGAAATTAAAATATACGACTTTTTCAACAACAGAAAAAGAAGAAAAAAAAGATTAATGGAGATATTCCAACAAATACACAGTTATTATAATTATTATTGGGTTAAATACTAAGAGTACTTAATTTTGTGGAAATGAATATGGTATAAAACTCAACCGTACTATTAGATGTGATCGAAGACATACTAAAAAGAAACACGAGTTTGACATAAAAACTTAAAATATTTAATTTATAAAGAAGACCTCCGACTTATAAGTTGATTTTGTAAAGATAAATTATGTTCTTATCAAAACATGATAGCTATGCCCATATATTATAACAAGTTCGTGCAAAACTTACAAGTTGATTTTTGTATAAACTCATGCAAAACTTTGTTGAGAAAGTACATCTAATAATCTCAAAAAAAATCAAACGTACAGGACCCGTACCTGCGAGCATGGCCGTTGGTGGGAGACGCAGTGGAGGATCCAACTGTGGAACCGTTCGAGAAGCTGCACGGAGAAGCAGCATATGCATATTGCACAAAGGGACCAGAAGAAATGAGTTTGTTTTATGCTTCCATGTCCGGGATGTCATTGCCCTACATGAGGGAAATGTTGGAGAATTATGATGGCTTCAAAGGTGTGGAGACTCTAGTTGATGTTGGTGGCAATTCTGGTGTGAGTCTCAACATGATTATGAACAAATATCCAAACATACTCAAAGGCATCAATTTTGATCTTCCCGATATGATCTCTTCTGCACCTCAATATCCAGGTAATTAGTCTATTTTTTGGGTCACTACCATTTTGGAACCTAATTAGTCTAATTTAAAAAAATAAAGTTAGATTGACAAATATTAGAGGACCGACCATCCTTAAAAAAATATATTAGTGGACCGACCATGTTAGTTTTTTGGTTTGTCCACGGACTAATTTTATTAAATTCGAGATAACGAACAAATTTATTCAAATTATTTAACTTTTGTGGCATGTATATAGGTATAACACACGTCGGTGGTGATGCACTTGAATCAGTTCCGGCTGGGGATGCTATCTTCATTAAGGTGTCTCTTTCACTGCATTAGTATTTTACCTACTTATCTCCAAAATATTTTTCAACTTTAGCACCATAGTAAGATATGATTTCCTCCCTTCTCAAAAATAGAGATATGATTTTCCACTATCTACTTACTTTTTTATAACCAAAATTTTATTATTAGGAGTAAACTAAACATAGTTGCCAATAACTAATGTTCAAACATACATCAGCCCATAATACAAAATGGTTGCTAAGATACTATTGTTACTTACTTTTTTGTTTTTTTGGGTAAATAAATATGATGCAGATGATAAACCCACTCCAACACCTTAGATAAATTAAAATTAAAAAAAAAAATACAAAAGGTCAGGGACATAAATGAAATCTGACTCAATGAAAAGTAAAAAAATGACACCAAAAAGTTTTAAACCAACCAGAAAGGATAATACAACCAACTCAAAGGGGATAAATCAAACAATCAGACAAAGCAAAAAGTTGCCCGTCATAGAAACCAAGATTTAAGGTGAACGAATACCCACCACAAGCACAACCCAACCCAACAAACCTGCAGCACGAACCAAAAATCAGACAAGGAAAAAGGGTGGTATGTTAACTCGTATTCCCAAATCAAGTTAGAGACTGGAACGAGTTGGGGCTCAAACTAGTTACAACAAACCAAGTCATAATGACACAGAAGCAACAACAACTAAGATCGAATTCACTGTTACAAACCAACTAGTTGTGATCAACCCCAACCAAATAAAATTGTCCAATCCGAGGCCAAACCAAATCCAACAGGAAGCCAACTAAATCTAAAGCTACACGGTTTAATCTCAACAAGGTGGAACCACCATGAATACATAAGCCACCCTGAGATCGAACCACAACAAAAAAACCACCACAAAAGCAAGTAAGTCTGAATCCACAACAAACGAGACCCATGACAAGCTTCCATGTTGTTGAATCGTGGAAGACATTGAAGCCATGGCCCAAAACCACGCGAACAACAGTAACAGTTCTGCAACACACACAACGACGGCAAGAAACAACCACCCAAACTCAGAATATATCCGGATCGGTGCCACGAACCCATGTCTGAGCTATCAATCTCATATCGAACCAAACCGAAGTACTGCATAATATACTGCATATTTTTTAACGTTAGACTATTATAACAATAAGGGGAGTGTTATTTGAACAACCAAATGAGACAACTTAACTTATGATAACTTTTTTTTCTCTCTTTTCATTGGTCAAAAACAATGGAGTGCGAAAAAGAAAGAGAGAGAATAAGAGTATAATGTGAGTATGAGAAAGAAAGTTGTCAAAAAAATTGTTAGAAAGTGATTGTACAAATATCATTTCTCTAGCAATAACTACGCATTTTACATTTTTCTTTAGACGAGATTTAAACTATGACACGTCGTCTATATGTATTTTATACTTCTACACTACTTATAAGTCAATTAATCATGATTCGTTTGTTATAAGTATGTCTTTGTAATAGAAAACTCGTGTAGTGGTACAATTGTTTTATTTGTGACAATGAGGTTGCTCATCTTAAAAAAAAAATAAGTATGTCTTTGTAAGCTTAACAATTTAATTACTTTTTAAAATTAAAATTTACATCATAATTTAAGGGGAAAAAAACTAAATAGAAATTTCAGTCATTCTTTTTTAAATTAATTTTTCTTGAGTAGTATAGATAAAAAAAATTAAATGAAAAATTTAAACTCGTTAATAAAATTGAAACAGATAAATTAAAATAATTCAAATACAAAAAAAAAAAAATTGGATAGACAGCTTTGTGGCGTGTTTCCGCTAGTTTCTTATAAAAAATACATATTTACCAAATAAGTGAAAAGAAAGATCATCATTCGATTTGATGCTCAACTCTTTTAATCGAGTGAAATTGAGTTTCTGCCAAAAAAACAAGATCATCATTAAAAACACTAATTAATTAATGCATATTTTACAGTACATCATTTTCTTTTTTTAAAAGAAGAGATCTTATATCATTTCACTAGTCAAAACGTGTTCAATACAATCAAGTGGCTCAACTAGGAGCTGAAAACTAGCTGACAATAGGGCCACCTTTGCTAACTTATGAGCAACCTCATTTGCTTGTCTTCGTGCAAACTCAACACTAGAGTTTTCATAGTACTCACTAAATTCGGATTTACATTCATTAATAATAGCACCATATTCCTTATAATCTTGCTTATTTTACAGTACATCATATCATTTGATACTTGTAACCAAAAATATCATTTGATACTTTAGATTTTCTTTAAGGAGATACTTTAGATATTTAAAACTCTTTAATTATAACTTTTTAATTCTATCAATTATAATTTTGTCGAAAAAAAAATCTATCAATTATAATTAATAGTTTTTTTTAGAGAATCAATTATGATTAATAGTATAATTATTGTTTTGCAGTGGACAGTGTTAACATGGACAGATGAAGAATTCAAGAAGGCCTTGCAAAGTTGTTACAAGGCTCTTCCAGTGGCCGGAAAATTGATTCTTTGTGAACCGGTGTTGCCGGAGCAGACCGATGAGAGTAAAAGAACAAGAGCATTGTTGGCGGCTGACATATGGATAATGACAATGTATAGAACTAAGGGAAAACACAGAACCGAAGAAGAATTCAAACAACTTGGCATTTCTGCTGGTTTTAAAAGTTTTCGTGCCTTCCATATTGATCCTTATTTGCCTGTACTTGAATTTCATAAATGA
Protein sequence

>MS.gene054945.t1

MENGKVAVVKPQSEARLAILELAHIMSVPTSLNAVLKMKVPEAIWQGGKNTPLSASQILSIVRPNGGGDAENLQRILRLLTTYTIFVEDLSSNGERKYSLTDVGKALVPDDDGLTCASFFVQHHQDPYLRAWPLVGDAVEDPTVEPFEKLHGEAAYAYCTKGPEEMSLFYASMSGMSLPYMREMLENYDGFKGVETLVDVGGNSGVSLNMIMNKYPNILKGINFDLPDMISSAPQYPGITHVGGDALESVPAGDAIFIKWTVLTWTDEEFKKALQSCYKALPVAGKLILCEPVLPEQTDESKRTRALLAADIWIMTMYRTKGKHRTEEEFKQLGISAGFKSFRAFHIDPYLPVLEFHK