AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049294

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049294.t1 MTR_3g096050 99.162 358 3 0 1 358 1 358 0.0 740
MS.gene049294.t1 MTR_3g096070 82.123 358 41 1 1 358 1 335 0.0 600
MS.gene049294.t1 MTR_3g096050 98.092 262 5 0 1 262 1 262 0.0 533
MS.gene049294.t1 MTR_2g072790 58.501 347 143 1 12 358 9 354 9.58e-159 449
MS.gene049294.t1 MTR_3g092900 37.429 350 210 6 14 358 18 363 1.63e-71 227
MS.gene049294.t1 MTR_5g098170 36.571 350 214 5 14 358 17 363 1.67e-68 219
MS.gene049294.t1 MTR_0591s0010 35.920 348 208 7 20 358 36 377 1.12e-66 215
MS.gene049294.t1 MTR_8g068750 33.913 345 219 5 20 358 36 377 7.14e-66 213
MS.gene049294.t1 MTR_7g118320 33.623 345 220 4 20 358 21 362 8.18e-66 212
MS.gene049294.t1 MTR_1g096310 36.267 375 210 11 2 358 9 372 7.15e-63 205
MS.gene049294.t1 MTR_8g068690 34.251 327 206 5 20 340 35 358 7.70e-63 205
MS.gene049294.t1 MTR_7g118300 33.807 352 227 4 10 358 27 375 7.74e-63 205
MS.gene049294.t1 MTR_7g012020 36.314 369 216 9 2 358 8 369 1.82e-62 204
MS.gene049294.t1 MTR_8g068870 33.333 354 221 7 14 358 16 363 1.84e-62 204
MS.gene049294.t1 MTR_1g036490 35.457 361 217 9 9 358 15 370 6.40e-62 202
MS.gene049294.t1 MTR_1g036460 35.278 360 219 7 9 358 15 370 3.15e-61 201
MS.gene049294.t1 MTR_7g011900 36.658 371 212 11 2 358 9 370 1.25e-60 199
MS.gene049294.t1 MTR_7g011990 36.261 353 203 8 17 358 26 367 3.94e-60 198
MS.gene049294.t1 MTR_7g012070 34.584 373 222 9 2 358 9 375 3.07e-59 196
MS.gene049294.t1 MTR_1g036510 35.556 360 218 8 9 358 29 384 9.27e-59 195
MS.gene049294.t1 MTR_2g055940 35.246 366 219 10 3 358 6 363 1.78e-58 193
MS.gene049294.t1 MTR_7g012040 35.310 371 216 12 2 358 8 368 3.38e-58 193
MS.gene049294.t1 MTR_3g021430 35.756 344 198 8 29 358 23 357 1.18e-57 191
MS.gene049294.t1 MTR_6g078850 33.728 338 213 5 14 343 34 368 1.82e-57 194
MS.gene049294.t1 MTR_7g012090 37.288 295 170 6 73 358 87 375 4.98e-56 187
MS.gene049294.t1 MTR_3g021440 37.543 293 170 6 73 358 84 370 6.17e-56 187
MS.gene049294.t1 MTR_0017s0100 33.427 356 224 9 7 355 16 365 7.63e-52 176
MS.gene049294.t1 MTR_8g068730 32.121 330 183 7 20 343 36 330 1.34e-51 175
MS.gene049294.t1 MTR_8g068570 34.069 317 167 8 20 327 36 319 3.75e-51 173
MS.gene049294.t1 MTR_8g024160 35.606 264 167 3 95 358 68 328 4.69e-51 173
MS.gene049294.t1 MTR_4g038440 32.303 356 228 9 7 355 16 365 6.02e-48 166
MS.gene049294.t1 MTR_0079s0070 32.827 329 211 8 31 355 9 331 3.48e-47 163
MS.gene049294.t1 MTR_8g068690 33.992 253 159 4 20 266 35 285 2.82e-46 159
MS.gene049294.t1 MTR_7g012020 36.431 269 161 6 2 262 8 274 8.48e-43 150
MS.gene049294.t1 MTR_1g050220 31.138 334 170 8 17 342 6 287 4.42e-40 143
MS.gene049294.t1 MTR_8g068600 34.348 230 143 4 37 260 27 254 3.18e-39 140
MS.gene049294.t1 MTR_1g036510 35.249 261 159 6 9 261 29 287 1.29e-37 137
MS.gene049294.t1 MTR_3g083620 30.091 329 213 11 32 354 40 357 4.98e-37 137
MS.gene049294.t1 MTR_8g068740 31.274 259 138 6 20 272 36 260 3.44e-36 132
MS.gene049294.t1 MTR_1g076940 28.274 336 221 10 31 355 32 358 9.76e-36 133
MS.gene049294.t1 MTR_7g014570 29.014 355 233 11 10 357 9 351 1.11e-35 133
MS.gene049294.t1 MTR_7g012020 34.286 245 151 6 2 238 8 250 1.86e-33 125
MS.gene049294.t1 MTR_4g088340 27.941 340 220 9 29 357 7 332 6.66e-33 125
MS.gene049294.t1 MTR_4g038440 32.819 259 164 6 7 259 16 270 8.05e-33 123
MS.gene049294.t1 MTR_7g014510 29.878 328 209 10 31 350 32 346 1.11e-32 125
MS.gene049294.t1 MTR_7g024520 28.319 339 213 11 29 356 29 348 1.89e-32 124
MS.gene049294.t1 MTR_4g088345 29.254 335 222 9 29 357 30 355 3.33e-32 124
MS.gene049294.t1 MTR_5g074600 27.812 320 217 8 31 343 32 344 4.36e-32 124
MS.gene049294.t1 MTR_4g079160 29.429 350 222 12 12 346 4 343 4.40e-32 124
MS.gene049294.t1 MTR_7g024500 28.529 340 211 11 29 356 29 348 1.10e-31 122
MS.gene049294.t1 MTR_4g033015 30.460 348 220 11 24 357 23 362 3.08e-31 121
MS.gene049294.t1 MTR_5g074680 28.022 364 242 12 2 357 8 359 4.63e-31 121
MS.gene049294.t1 MTR_5g074580 28.409 352 228 12 2 343 8 345 4.97e-31 120
MS.gene049294.t1 MTR_4g088200 28.783 337 222 11 31 357 32 360 5.32e-31 120
MS.gene049294.t1 MTR_4g033200 30.172 348 221 11 24 357 23 362 4.28e-30 118
MS.gene049294.t1 MTR_8g068620 46.364 110 58 1 150 259 2 110 2.86e-28 107
MS.gene049294.t1 MTR_1g036510 33.193 238 149 6 9 238 29 264 4.93e-28 110
MS.gene049294.t1 MTR_4g088190 29.412 340 219 10 31 357 32 363 5.16e-28 112
MS.gene049294.t1 MTR_4g033150 28.614 339 222 10 31 357 32 362 1.45e-26 108
MS.gene049294.t1 MTR_5g074540 26.149 348 223 12 2 343 7 326 1.80e-26 108
MS.gene049294.t1 MTR_5g074610 27.586 319 190 10 31 343 28 311 3.36e-25 104
MS.gene049294.t1 MTR_4g033170 28.267 329 218 11 24 343 23 342 1.58e-21 94.7
MS.gene049294.t1 MTR_1g076930 26.582 237 162 7 29 259 7 237 1.09e-18 84.7
MS.gene049294.t1 MTR_4g033085 27.964 329 219 11 24 343 23 342 1.33e-18 86.3
MS.gene049294.t1 MTR_8g068760 35.000 100 64 1 259 358 135 233 6.76e-12 65.1
MS.gene049294.t1 MTR_0794s0020 28.571 224 145 8 31 245 32 249 2.69e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049294.t1 AT3G53140 57.835 351 144 1 12 358 9 359 2.85e-152 433
MS.gene049294.t1 AT5G54160 40.719 334 189 6 14 343 18 346 5.22e-76 239
MS.gene049294.t1 AT1G33030 35.277 343 213 7 23 358 10 350 1.99e-58 193
MS.gene049294.t1 AT1G51990 34.812 293 184 4 53 340 54 344 1.40e-57 191
MS.gene049294.t1 AT1G51990 35.154 293 183 4 53 340 54 344 5.59e-57 189
MS.gene049294.t1 AT1G77520 31.519 349 224 7 22 358 36 381 9.35e-53 179
MS.gene049294.t1 AT1G77530 33.807 352 212 10 22 358 36 381 6.03e-44 156
MS.gene049294.t1 AT1G21100 32.500 360 230 9 8 358 18 373 5.39e-41 148
MS.gene049294.t1 AT5G53810 32.716 324 202 8 29 339 39 359 2.22e-40 146
MS.gene049294.t1 AT1G63140 31.034 348 227 7 22 358 36 381 6.19e-40 145
MS.gene049294.t1 AT1G63140 31.034 348 227 7 22 358 56 401 1.26e-39 145
MS.gene049294.t1 AT1G21120 32.500 360 230 10 8 358 18 373 1.51e-39 144
MS.gene049294.t1 AT1G21130 31.944 360 232 9 8 358 18 373 1.99e-39 144
MS.gene049294.t1 AT1G21120 32.500 360 230 10 8 358 66 421 7.91e-39 143
MS.gene049294.t1 AT1G21110 31.944 360 232 9 8 358 18 373 1.18e-38 142
MS.gene049294.t1 AT1G76790 31.198 359 230 9 12 358 12 365 3.20e-38 140
MS.gene049294.t1 AT5G37170 38.660 194 115 4 167 358 43 234 5.03e-38 136
MS.gene049294.t1 AT5G37170 39.362 188 110 4 173 358 1 186 1.38e-37 134
MS.gene049294.t1 AT5G37170 38.660 194 115 4 167 358 143 334 6.13e-37 136
MS.gene049294.t1 AT1G62900 38.220 191 117 1 168 358 16 205 1.27e-34 126
MS.gene049294.t1 AT1G33030 34.661 251 156 6 23 266 10 259 2.55e-34 127
MS.gene049294.t1 AT1G33030 35.246 244 150 6 23 259 10 252 2.57e-34 127
MS.gene049294.t1 AT4G35160 30.028 363 233 10 1 348 15 371 3.18e-34 130
MS.gene049294.t1 AT4G35150 27.171 357 208 9 1 348 1 314 5.31e-31 120
MS.gene049294.t1 AT1G63140 31.727 249 157 7 22 259 56 302 1.83e-23 99.4
MS.gene049294.t1 AT1G21130 30.851 282 181 8 8 278 18 296 3.32e-22 95.5
MS.gene049294.t1 AT1G77530 31.878 229 141 7 22 238 36 261 3.16e-16 78.2
MS.gene049294.t1 AT1G63140 29.694 229 148 7 21 238 55 281 4.87e-14 72.0

Find 100 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCGAGGCTTGCCATTT+TGG 0.196493 3.3:-79667466 MS.gene049294:CDS
GTTGATGTTGGTGGCAATTC+TGG 0.233978 3.3:-79666426 MS.gene049294:CDS
TGAAAATACCCGAAGCTATA+TGG 0.308849 3.3:-79667392 MS.gene049294:CDS
TCCGCCATTGGGACGGACTA+TGG 0.310272 3.3:+79667326 None:intergenic
TAAAACAAACTCATTTCTTC+TGG 0.323627 3.3:+79666531 None:intergenic
AATTCAAGTACAGGCAAATA+AGG 0.328492 3.3:+79663399 None:intergenic
TCCACCTTGCCATATAGCTT+CGG 0.328569 3.3:+79667383 None:intergenic
TGGAGATGCTATCTTCATTA+AGG 0.373040 3.3:-79666070 MS.gene049294:intron
TTGATGCCTTTGAGTATGTT+TGG 0.379016 3.3:+79666372 None:intergenic
CCACCTTGCCATATAGCTTC+GGG 0.392994 3.3:+79667384 None:intergenic
GCAAGCCTCGCTTCACTTTG+AGG 0.394145 3.3:+79667474 None:intergenic
AAAATTGATTCTTTGTGAAC+CGG 0.399849 3.3:-79663589 MS.gene049294:CDS
AAGTTGTTACAAGGCTCTTC+CGG 0.400003 3.3:-79663619 MS.gene049294:CDS
CAGGCAAATAAGGATCAATA+TGG 0.400215 3.3:+79663409 None:intergenic
TCTTTGTGAACCGGTGTTGC+CGG 0.403316 3.3:-79663580 MS.gene049294:CDS
CATTGTTGGCGGCTGACATA+TGG 0.414881 3.3:-79663527 MS.gene049294:CDS
TTCAGCGTCTCCTCCGCCAT+TGG 0.420478 3.3:+79667314 None:intergenic
AAGTTGTTTGAATTCTTCTT+CGG 0.424797 3.3:+79663467 None:intergenic
TAAAAGAACAAGAGCATTGT+TGG 0.438527 3.3:-79663541 MS.gene049294:CDS
TTATTTAAACCTGATGGTGC+TGG 0.448459 3.3:+79667142 None:intergenic
AACGGCCATGCTCGCAGGTA+CGG 0.451973 3.3:+79666639 None:intergenic
TAGTAAACAATAATGGAGAA+TGG 0.453157 3.3:-79667516 None:intergenic
AGTAAACAATAATGGAGAAT+GGG 0.454231 3.3:-79667515 None:intergenic
TCAGCGTCTCCTCCGCCATT+GGG 0.454837 3.3:+79667315 None:intergenic
AATGACAATGTATAGAACTA+AGG 0.459777 3.3:-79663502 MS.gene049294:CDS
CCTGCGAGCATGGCCGTTGG+TGG 0.463499 3.3:-79666634 MS.gene049294:CDS
AATGTGTGCAAGTTCCAAAA+TGG 0.463723 3.3:+79667452 None:intergenic
AAACAACTTGGCATTTCTGC+TGG 0.463760 3.3:-79663453 MS.gene049294:CDS
GAGAATTATGATGGCTTCAA+AGG 0.465146 3.3:-79666462 MS.gene049294:CDS
TTACTCTCATCGGTCTGCTC+CGG 0.470793 3.3:+79663561 None:intergenic
TACAAGGCTCTTCCGGTGGC+CGG 0.475763 3.3:-79663612 MS.gene049294:CDS
TGATGCACTTGAATCAGTTC+CGG 0.476408 3.3:-79666094 MS.gene049294:CDS
AGAATTTGAGAGGCAGAGAG+TGG 0.478385 3.3:+79667351 None:intergenic
CCACCAACGGCCATGCTCGC+AGG 0.480027 3.3:+79666634 None:intergenic
TAGTATAAGTGGTGAGCAAA+CGG 0.493082 3.3:+79667274 None:intergenic
GCATATGCATATTGCACAAA+GGG 0.496481 3.3:-79666555 MS.gene049294:CDS
CATTTATGAAATTCAAGTAC+AGG 0.499673 3.3:+79663390 None:intergenic
GAAATGTTGGAGAATTATGA+TGG 0.500624 3.3:-79666471 MS.gene049294:CDS
ACGGCCATGCTCGCAGGTAC+GGG 0.509344 3.3:+79666640 None:intergenic
TCTTCTGCACCTCAATATCC+AGG 0.511364 3.3:-79666327 MS.gene049294:intron
GACTAATTACCTGGATATTG+AGG 0.516427 3.3:+79666318 None:intergenic
GGCCTTGCAAAGTTGTTACA+AGG 0.518740 3.3:-79663628 MS.gene049294:CDS
AGGTGCAGAAGAGATCATAT+CGG 0.519685 3.3:+79666338 None:intergenic
TTCTCGAACGGTTCCACAGT+TGG 0.522298 3.3:+79666594 None:intergenic
TCCAACATTTCCCTCATGTA+GGG 0.523535 3.3:+79666483 None:intergenic
TCTCCGTGCAGCTTCTCGAA+CGG 0.525123 3.3:+79666582 None:intergenic
GCCCTACATGAGGGAAATGT+TGG 0.530544 3.3:-79666484 MS.gene049294:CDS
CTGCGAGCATGGCCGTTGGT+GGG 0.530884 3.3:-79666633 MS.gene049294:CDS
TGCAGTGGACAGTGTTAACA+TGG 0.535443 3.3:-79663671 MS.gene049294:intron
TCGGTCTGCTCCGGCAACAC+CGG 0.535499 3.3:+79663570 None:intergenic
GGGCAATGACATCCCGGACA+TGG 0.544215 3.3:+79666503 None:intergenic
CAGGTCAGACCATCATCATC+GGG 0.545460 3.3:+79667180 None:intergenic
CGTCTCCTCCGCCATTGGGA+CGG 0.546520 3.3:+79667319 None:intergenic
GCTCTTGTTCCCGATGATGA+TGG 0.547808 3.3:-79667189 MS.gene049294:CDS
AGGACCCGTACCTGCGAGCA+TGG 0.558958 3.3:-79666644 MS.gene049294:CDS
ATGACAATGTATAGAACTAA+GGG 0.561414 3.3:-79663501 MS.gene049294:CDS
GCACTTGAATCAGTTCCGGC+TGG 0.561424 3.3:-79666090 MS.gene049294:CDS
GGTGCAGAAGAGATCATATC+GGG 0.566072 3.3:+79666339 None:intergenic
AGCCTTGTAACAACTTTGCA+AGG 0.570449 3.3:+79663626 None:intergenic
ACAGGTCAGACCATCATCAT+CGG 0.570773 3.3:+79667179 None:intergenic
CATGTAGGGCAATGACATCC+CGG 0.570892 3.3:+79666497 None:intergenic
GCCGTTGGTGGGAGACGCAG+TGG 0.570986 3.3:-79666622 MS.gene049294:CDS
CTCCAACATTTCCCTCATGT+AGG 0.575549 3.3:+79666482 None:intergenic
TCCATAGTCCGTCCCAATGG+CGG 0.577664 3.3:-79667327 MS.gene049294:CDS
ACTTGAGCAGCAATGGTGAA+AGG 0.580995 3.3:-79667239 MS.gene049294:CDS
GTTGAGGACTTGAGCAGCAA+TGG 0.582872 3.3:-79667246 MS.gene049294:CDS
AGCTTTACCGACATCGGTGA+GGG 0.585301 3.3:+79667209 None:intergenic
CTCTCCATAGTCCGTCCCAA+TGG 0.588927 3.3:-79667330 MS.gene049294:CDS
AAGTACTCCCTCACCGATGT+CGG 0.589045 3.3:-79667216 MS.gene049294:CDS
GAAGAAGAATTCAAACAACT+TGG 0.589425 3.3:-79663465 MS.gene049294:CDS
GTGGAGACTCTAGTTGATGT+TGG 0.592031 3.3:-79666438 MS.gene049294:CDS
AAGAACAAGAGCATTGTTGG+CGG 0.593672 3.3:-79663538 MS.gene049294:CDS
GTTGGTGGGAGACGCAGTGG+AGG 0.598693 3.3:-79666619 MS.gene049294:CDS
CAAATAAGGATCAATATGGA+AGG 0.598974 3.3:+79663413 None:intergenic
GGATGTCATTGCCCTACATG+AGG 0.599139 3.3:-79666494 MS.gene049294:CDS
AAATATCCAAACATACTCAA+AGG 0.599530 3.3:-79666378 MS.gene049294:CDS
ATAGTCCGTCCCAATGGCGG+AGG 0.606262 3.3:-79667324 MS.gene049294:CDS
AACAAGAGCTTTACCGACAT+CGG 0.606967 3.3:+79667203 None:intergenic
TCCACTGCGTCTCCCACCAA+CGG 0.608024 3.3:+79666621 None:intergenic
TTATGATGGCTTCAAAGGTG+TGG 0.610913 3.3:-79666457 MS.gene049294:CDS
ATGAAGATAGCATCTCCAGC+CGG 0.613987 3.3:+79666075 None:intergenic
TTGTTACAAGGCTCTTCCGG+TGG 0.614903 3.3:-79663616 MS.gene049294:CDS
GACAGATGAAGAATTCAAGA+AGG 0.615326 3.3:-79663649 MS.gene049294:CDS
GATGTCATTGCCCTACATGA+GGG 0.616477 3.3:-79666493 MS.gene049294:CDS
GACTATGGAGAGAATTTGAG+AGG 0.637733 3.3:+79667341 None:intergenic
AGCATATGCATATTGCACAA+AGG 0.638121 3.3:-79666556 MS.gene049294:CDS
GAACCGTTCGAGAAGCTGCA+CGG 0.649830 3.3:-79666585 MS.gene049294:CDS
GTACCTGCGAGCATGGCCGT+TGG 0.655083 3.3:-79666637 MS.gene049294:CDS
ATACCCGAAGCTATATGGCA+AGG 0.657615 3.3:-79667387 MS.gene049294:CDS
GAGCTTTACCGACATCGGTG+AGG 0.661236 3.3:+79667208 None:intergenic
TGAGCAAACGGAGGATACGT+TGG 0.661794 3.3:+79667286 None:intergenic
GAGACTCTAGTTGATGTTGG+TGG 0.662906 3.3:-79666435 MS.gene049294:CDS
GGAGAATGGGAAAGTTGCTG+TGG 0.664770 3.3:-79667502 MS.gene049294:CDS
AGAACAGCATTAAGGGACGT+AGG 0.670135 3.3:+79667420 None:intergenic
CGCAGTGGAGGATCCAACTG+TGG 0.674969 3.3:-79666607 MS.gene049294:CDS
CCCGAAGCTATATGGCAAGG+TGG 0.684266 3.3:-79667384 MS.gene049294:CDS
TAAAGCCTCAAAGTGAAGCG+AGG 0.698513 3.3:-79667479 MS.gene049294:CDS
TATAAGTGGTGAGCAAACGG+AGG 0.715321 3.3:+79667277 None:intergenic
TATATAGGTATAACACACGT+CGG 0.727621 3.3:-79666120 MS.gene049294:intron
ATAGGTATAACACACGTCGG+TGG 0.737739 3.3:-79666117 MS.gene049294:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAGAATAATACAAA+AGG - chr3.3:79665163-79665182 MS.gene049294:intron 10.0%
!! AAAATTTACATCATAATTTA+AGG - chr3.3:79666419-79666438 MS.gene049294:CDS 10.0%
!! AAATTTACATCATAATTTAA+GGG - chr3.3:79666420-79666439 MS.gene049294:CDS 10.0%
!! ACAGTTATTATAATTATTAT+TGG - chr3.3:79663910-79663929 MS.gene049294:intron 10.0%
!! CAGTTATTATAATTATTATT+GGG - chr3.3:79663911-79663930 MS.gene049294:intron 10.0%
!!! ATAACCAAAATTTTATTATT+AGG - chr3.3:79664979-79664998 MS.gene049294:intron 10.0%
!!! TTACTTTTTTGTTTTTTTTT+GGG - chr3.3:79665088-79665107 MS.gene049294:intron 10.0%
!!! TTTTTTAAATTAGACTAATT+AGG + chr3.3:79664629-79664648 None:intergenic 10.0%
!! AAGAAGAAAAAAAAGATTAA+TGG - chr3.3:79663869-79663888 MS.gene049294:intron 15.0%
!! AATTTACATCATAATTTAAG+GGG - chr3.3:79666421-79666440 MS.gene049294:CDS 15.0%
!! AGAAGAAAAAAAAGATTAAT+GGG - chr3.3:79663870-79663889 MS.gene049294:intron 15.0%
!! ATAAAAAAGTAAATAGATAG+TGG + chr3.3:79664961-79664980 None:intergenic 15.0%
!!! CTTACTTTTTTGTTTTTTTT+TGG - chr3.3:79665087-79665106 MS.gene049294:intron 15.0%
!!! GATACTTTAGTTTTTTTTTA+AGG - chr3.3:79667058-79667077 MS.gene049294:intron 15.0%
!!! TACTCCTAATAATAAAATTT+TGG + chr3.3:79664986-79665005 None:intergenic 15.0%
!!! TATTTTTTATAAGAAACTAG+CGG + chr3.3:79666625-79666644 None:intergenic 15.0%
!!! TTCAATTTATTTAACTTTTG+TGG - chr3.3:79664746-79664765 MS.gene049294:intron 15.0%
!!! TTTTTTTTTTCTCTTTTCAT+TGG - chr3.3:79666032-79666051 MS.gene049294:intron 15.0%
!! AAAAAAAAAAGTTGTCACAT+AGG + chr3.3:79666022-79666041 None:intergenic 20.0%
!! AATTTAATAAAATTAGTCCG+TGG + chr3.3:79664706-79664725 None:intergenic 20.0%
!! ATAAGTTTATTTAAACCTGA+TGG + chr3.3:79663760-79663779 None:intergenic 20.0%
!! GAAGAAAAAAAAGATTAATG+GGG - chr3.3:79663871-79663890 MS.gene049294:intron 20.0%
!! GTAAAATAAGCAAGATTATA+AGG + chr3.3:79667021-79667040 None:intergenic 20.0%
!! TACAAAATCAACTTATAAGT+CGG + chr3.3:79664079-79664098 None:intergenic 20.0%
!! TATAATAACTGTGTATTTGT+TGG + chr3.3:79663902-79663921 None:intergenic 20.0%
!! TATGTTTGAACATTAGTTAT+TGG + chr3.3:79665024-79665043 None:intergenic 20.0%
!!! AAAATATTTTGGAGATAAGT+AGG + chr3.3:79664876-79664895 None:intergenic 20.0%
!!! ACGAACTTGTTATAATATAT+GGG + chr3.3:79664140-79664159 None:intergenic 20.0%
!!! AGGTAATTAGTCTATTTTTT+GGG - chr3.3:79664586-79664605 MS.gene049294:intron 20.0%
!!! GCTAAAGTTGAAAAATATTT+TGG + chr3.3:79664887-79664906 None:intergenic 20.0%
!!! TAATGATGATCTTGTTTTTT+TGG + chr3.3:79666731-79666750 None:intergenic 20.0%
!!! TAATTTTGTGGAAATGAATA+TGG - chr3.3:79663952-79663971 MS.gene049294:intron 20.0%
!!! TTTTAATTTATCTAAGGTGT+TGG + chr3.3:79665142-79665161 None:intergenic 20.0%
! AAAATGCGTAGTTATTGTTA+GGG + chr3.3:79666168-79666187 None:intergenic 25.0%
! AAAGAATAATACAAAAGGTC+AGG - chr3.3:79665168-79665187 MS.gene049294:intron 25.0%
! AAATATCCAAACATACTCAA+AGG - chr3.3:79664515-79664534 MS.gene049294:intron 25.0%
! AAGAATAATACAAAAGGTCA+GGG - chr3.3:79665169-79665188 MS.gene049294:intron 25.0%
! AAGCAAGATTATAAGGAATA+TGG + chr3.3:79667014-79667033 None:intergenic 25.0%
! AAGTTGTTTGAATTCTTCTT+CGG + chr3.3:79667429-79667448 None:intergenic 25.0%
! AATACAGTACTCACTAAATA+CGG - chr3.3:79666965-79666984 MS.gene049294:intron 25.0%
! AATGACAATGTATAGAACTA+AGG - chr3.3:79667391-79667410 MS.gene049294:CDS 25.0%
! AGTTAGATTGACAAATATAG+AGG - chr3.3:79664653-79664672 MS.gene049294:intron 25.0%
! ATGACAATGTATAGAACTAA+GGG - chr3.3:79667392-79667411 MS.gene049294:CDS 25.0%
! ATGTCTTTGTAATAGAAAAC+TGG - chr3.3:79666293-79666312 MS.gene049294:intron 25.0%
! CAAAAAATAGACTAATTACC+TGG + chr3.3:79664587-79664606 None:intergenic 25.0%
! CATTTATGAAATTCAAGTAC+AGG + chr3.3:79667506-79667525 None:intergenic 25.0%
! CTCAACAAAAATAGTATAAG+TGG + chr3.3:79663633-79663652 None:intergenic 25.0%
! TAAAACAAACTCATTTCTTC+TGG + chr3.3:79664365-79664384 None:intergenic 25.0%
! TAAAATGCGTAGTTATTGTT+AGG + chr3.3:79666169-79666188 None:intergenic 25.0%
! TCAAAAAAAATCAAACGTAC+AGG - chr3.3:79664229-79664248 MS.gene049294:intron 25.0%
! TTAAATCTTGGTTTCTATGA+CGG + chr3.3:79665313-79665332 None:intergenic 25.0%
! TTTAGACGAGATTTAAACTA+TGG - chr3.3:79666197-79666216 MS.gene049294:intron 25.0%
!! AAAATTGATTCTTTGTGAAC+CGG - chr3.3:79667304-79667323 MS.gene049294:CDS 25.0%
!! AATTTTTAAACCAACCAGAA+AGG - chr3.3:79665234-79665253 MS.gene049294:intron 25.0%
!! GATCTTTCTTTTCACTTATT+TGG + chr3.3:79666656-79666675 None:intergenic 25.0%
!! TAGCAACCATTTTGTATTAT+GGG + chr3.3:79665053-79665072 None:intergenic 25.0%
!! TTAGCAACCATTTTGTATTA+TGG + chr3.3:79665054-79665073 None:intergenic 25.0%
!! TTCACAAAGAATCAATTTTC+CGG + chr3.3:79667303-79667322 None:intergenic 25.0%
!! TTTTCATTGGTCAAAAACAA+TGG - chr3.3:79666045-79666064 MS.gene049294:intron 25.0%
!!! ACTAAGAGTACTTAATTTTG+TGG - chr3.3:79663940-79663959 MS.gene049294:intron 25.0%
!!! ATTGGACAATTTTATTTGGT+TGG + chr3.3:79665579-79665598 None:intergenic 25.0%
!!! CACGAACTTGTTATAATATA+TGG + chr3.3:79664141-79664160 None:intergenic 25.0%
!!! CACTTATACTATTTTTGTTG+AGG - chr3.3:79663631-79663650 MS.gene049294:CDS 25.0%
!!! CAGGTAATTAGTCTATTTTT+TGG - chr3.3:79664585-79664604 MS.gene049294:intron 25.0%
!!! CATATCTCTATTTTTGAGAA+GGG + chr3.3:79664933-79664952 None:intergenic 25.0%
!!! CATTGGAATCTTTAATTTGT+TGG + chr3.3:79665485-79665504 None:intergenic 25.0%
!!! CTGGTTGGTTTAAAAATTTT+TGG + chr3.3:79665232-79665251 None:intergenic 25.0%
!!! GTATAATTATTGTTTTGCAG+TGG - chr3.3:79667207-79667226 MS.gene049294:CDS 25.0%
!!! TCATATCTCTATTTTTGAGA+AGG + chr3.3:79664934-79664953 None:intergenic 25.0%
!!! TTGGACAATTTTATTTGGTT+GGG + chr3.3:79665578-79665597 None:intergenic 25.0%
!!! TTGTTTTATTTGTGACAATG+AGG - chr3.3:79666329-79666348 MS.gene049294:CDS 25.0%
AAATAAAATTGTCCAATCCG+AGG - chr3.3:79665582-79665601 MS.gene049294:intron 30.0%
AACCAAAAAACTAACATGGT+CGG + chr3.3:79664680-79664699 None:intergenic 30.0%
AATTCAAGTACAGGCAAATA+AGG + chr3.3:79667497-79667516 None:intergenic 30.0%
AGACTAATTAGGTTCCAAAA+TGG + chr3.3:79664618-79664637 None:intergenic 30.0%
ATAATACAACCAACTCAAAG+GGG - chr3.3:79665257-79665276 MS.gene049294:intron 30.0%
ATTCGGATATATTCTGAGTT+TGG + chr3.3:79665881-79665900 None:intergenic 30.0%
CAAATAAGGATCAATATGGA+AGG + chr3.3:79667483-79667502 None:intergenic 30.0%
GAAATGTTGGAGAATTATGA+TGG - chr3.3:79664422-79664441 MS.gene049294:intron 30.0%
GAAGAAGAATTCAAACAACT+TGG - chr3.3:79667428-79667447 MS.gene049294:CDS 30.0%
GACAAACCAAAAAACTAACA+TGG + chr3.3:79664684-79664703 None:intergenic 30.0%
GAGATCTTATATCATTTCAC+CGG - chr3.3:79666810-79666829 MS.gene049294:intron 30.0%
GAGGAAATCATATCTTACTA+TGG + chr3.3:79664911-79664930 None:intergenic 30.0%
GATAATACAACCAACTCAAA+GGG - chr3.3:79665256-79665275 MS.gene049294:intron 30.0%
GTCATAGAAACCAAGATTTA+AGG - chr3.3:79665312-79665331 MS.gene049294:intron 30.0%
GTTCGACACTATTCTAATTT+GGG + chr3.3:79665517-79665536 None:intergenic 30.0%
TAAATCTTGGTTTCTATGAC+GGG + chr3.3:79665312-79665331 None:intergenic 30.0%
TACACGATTTAATCTCAACA+AGG - chr3.3:79665644-79665663 MS.gene049294:intron 30.0%
TATATAGGTATAACACACGT+CGG - chr3.3:79664773-79664792 MS.gene049294:intron 30.0%
TATTCGTTCACCTTAAATCT+TGG + chr3.3:79665325-79665344 None:intergenic 30.0%
TGTTCGACACTATTCTAATT+TGG + chr3.3:79665518-79665537 None:intergenic 30.0%
TTCGACACTATTCTAATTTG+GGG + chr3.3:79665516-79665535 None:intergenic 30.0%
TTCGGATATATTCTGAGTTT+GGG + chr3.3:79665880-79665899 None:intergenic 30.0%
! AACTTTTGTGGCATGTATAT+AGG - chr3.3:79664758-79664777 MS.gene049294:intron 30.0%
! ATAGGTTAAGTTGTCTCATT+TGG + chr3.3:79666004-79666023 None:intergenic 30.0%
! TCTTGTTCTTTTACTCTCAT+CGG + chr3.3:79667345-79667364 None:intergenic 30.0%
!! CATTTTGAGAACAGCATTAA+GGG + chr3.3:79663483-79663502 None:intergenic 30.0%
!! TAAAAGAACAAGAGCATTGT+TGG - chr3.3:79667352-79667371 MS.gene049294:CDS 30.0%
!! TCATTTTGAGAACAGCATTA+AGG + chr3.3:79663484-79663503 None:intergenic 30.0%
!! TCGGATTGGACAATTTTATT+TGG + chr3.3:79665583-79665602 None:intergenic 30.0%
!! TGGACAATTTTATTTGGTTG+GGG + chr3.3:79665577-79665596 None:intergenic 30.0%
!!! TTAGTTTTTTGGTTTGTCCA+CGG - chr3.3:79664686-79664705 MS.gene049294:intron 30.0%
AAATTGGATAGACAGCTTTG+TGG - chr3.3:79666592-79666611 MS.gene049294:CDS 35.0%
AATGTGTGCAAGTTCCAAAA+TGG + chr3.3:79663444-79663463 None:intergenic 35.0%
ACGATTTAATCTCAACAAGG+TGG - chr3.3:79665647-79665666 MS.gene049294:intron 35.0%
AGCATATGCATATTGCACAA+AGG - chr3.3:79664337-79664356 MS.gene049294:intron 35.0%
ATTGGTCAAAAACAATGGAG+TGG - chr3.3:79666050-79666069 MS.gene049294:intron 35.0%
CAGGCAAATAAGGATCAATA+TGG + chr3.3:79667487-79667506 None:intergenic 35.0%
CATCAGCCCATAATACAAAA+TGG - chr3.3:79665044-79665063 MS.gene049294:intron 35.0%
CTGAAAACTAGCTGACAATA+GGG - chr3.3:79666873-79666892 MS.gene049294:intron 35.0%
GACAGATGAAGAATTCAAGA+AGG - chr3.3:79667244-79667263 MS.gene049294:CDS 35.0%
GACTAATTACCTGGATATTG+AGG + chr3.3:79664578-79664597 None:intergenic 35.0%
GAGAATTATGATGGCTTCAA+AGG - chr3.3:79664431-79664450 MS.gene049294:intron 35.0%
GCATATGCATATTGCACAAA+GGG - chr3.3:79664338-79664357 MS.gene049294:intron 35.0%
GGATAATACAACCAACTCAA+AGG - chr3.3:79665255-79665274 MS.gene049294:intron 35.0%
GTAATAGAAAACTGGTGTAG+TGG - chr3.3:79666301-79666320 MS.gene049294:intron 35.0%
GTTGGTTGTATTATCCTTTC+TGG + chr3.3:79665251-79665270 None:intergenic 35.0%
TAGTATAAGTGGTGAGCAAA+CGG + chr3.3:79663622-79663641 None:intergenic 35.0%
TGAAAATACCCGAAGCTATA+TGG - chr3.3:79663501-79663520 MS.gene049294:CDS 35.0%
TGGAGATGCTATCTTCATTA+AGG - chr3.3:79664823-79664842 MS.gene049294:intron 35.0%
TTGATGCCTTTGAGTATGTT+TGG + chr3.3:79664524-79664543 None:intergenic 35.0%
TTGATTTATCCCCTTTGAGT+TGG + chr3.3:79665269-79665288 None:intergenic 35.0%
TTGGTCAAAAACAATGGAGT+GGG - chr3.3:79666051-79666070 MS.gene049294:intron 35.0%
! GTTGTATTATCCTTTCTGGT+TGG + chr3.3:79665247-79665266 None:intergenic 35.0%
! TTATTTAAACCTGATGGTGC+TGG + chr3.3:79663754-79663773 None:intergenic 35.0%
!! ATTTATCTAAGGTGTTGGAG+TGG + chr3.3:79665137-79665156 None:intergenic 35.0%
!! CGTGTAGCTTTAGATTTAGT+TGG + chr3.3:79665630-79665649 None:intergenic 35.0%
!! TTCAGACTTACTTGCTTTTG+TGG + chr3.3:79665726-79665745 None:intergenic 35.0%
!! TTGTTTTATGCTTCCATGTC+CGG - chr3.3:79664377-79664396 MS.gene049294:intron 35.0%
!! TTTATCTAAGGTGTTGGAGT+GGG + chr3.3:79665136-79665155 None:intergenic 35.0%
!!! AATTTGGGGTTGCTTTTCAT+TGG + chr3.3:79665502-79665521 None:intergenic 35.0%
!!! ATCTCTATTTTTGAGAAGGG+AGG + chr3.3:79664930-79664949 None:intergenic 35.0%
!!! TTGTGGTGGTTTTTTTGTTG+TGG + chr3.3:79665709-79665728 None:intergenic 35.0%
!!! TTTTTGGGTCACTACCATTT+TGG - chr3.3:79664601-79664620 MS.gene049294:intron 35.0%
AAACAACTTGGCATTTCTGC+TGG - chr3.3:79667440-79667459 MS.gene049294:CDS 40.0%
AACAACATGGAAGCTTGTCA+TGG + chr3.3:79665766-79665785 None:intergenic 40.0%
AACAAGAGCTTTACCGACAT+CGG + chr3.3:79663693-79663712 None:intergenic 40.0%
AAGTTGTTACAAGGCTCTTC+CGG - chr3.3:79667274-79667293 MS.gene049294:CDS 40.0%
ACAACATGGAAGCTTGTCAT+GGG + chr3.3:79665765-79665784 None:intergenic 40.0%
ACGTGTTCAACACAATCAAG+TGG - chr3.3:79666838-79666857 MS.gene049294:intron 40.0%
AGGTGCAGAAGAGATCATAT+CGG + chr3.3:79664558-79664577 None:intergenic 40.0%
CAAGGTGGCTTATGTATTCA+TGG + chr3.3:79665678-79665697 None:intergenic 40.0%
GACTATGGAGAGAATTTGAG+AGG + chr3.3:79663555-79663574 None:intergenic 40.0%
GCTGAAAACTAGCTGACAAT+AGG - chr3.3:79666872-79666891 MS.gene049294:intron 40.0%
GGATATATTCTGAGTTTGGG+TGG + chr3.3:79665877-79665896 None:intergenic 40.0%
GGTTGCTCATAAGTTAGCAA+AGG + chr3.3:79666902-79666921 None:intergenic 40.0%
TCCAACATTTCCCTCATGTA+GGG + chr3.3:79664413-79664432 None:intergenic 40.0%
TCTTCCACGATTCAACAACA+TGG + chr3.3:79665779-79665798 None:intergenic 40.0%
TGATGCACTTGAATCAGTTC+CGG - chr3.3:79664799-79664818 MS.gene049294:intron 40.0%
TGCTCATAAGTTAGCAAAGG+TGG + chr3.3:79666899-79666918 None:intergenic 40.0%
TTATGATGGCTTCAAAGGTG+TGG - chr3.3:79664436-79664455 MS.gene049294:intron 40.0%
! AGATTTAGTTGGCTTCCTGT+TGG + chr3.3:79665619-79665638 None:intergenic 40.0%
! AGCCTTGTAACAACTTTGCA+AGG + chr3.3:79667270-79667289 None:intergenic 40.0%
! GAGATTGATAGCTCAGACAT+GGG + chr3.3:79665916-79665935 None:intergenic 40.0%
! GCTTCTGTGTCATTATGACT+TGG + chr3.3:79665429-79665448 None:intergenic 40.0%
! TGAGATTGATAGCTCAGACA+TGG + chr3.3:79665917-79665936 None:intergenic 40.0%
! TGTTTTATGCTTCCATGTCC+GGG - chr3.3:79664378-79664397 MS.gene049294:intron 40.0%
! TTTGTTGTGGTTCGATCTCA+AGG + chr3.3:79665696-79665715 None:intergenic 40.0%
!! AAGAACAAGAGCATTGTTGG+CGG - chr3.3:79667355-79667374 MS.gene049294:CDS 40.0%
!! AGACTTACTTGCTTTTGTGG+TGG + chr3.3:79665723-79665742 None:intergenic 40.0%
!! TGTGTTGAACACGTTTTGAC+CGG + chr3.3:79666832-79666851 None:intergenic 40.0%
!!! GACCGACCATGTTAGTTTTT+TGG - chr3.3:79664675-79664694 MS.gene049294:intron 40.0%
ACAGGTCAGACCATCATCAT+CGG + chr3.3:79663717-79663736 None:intergenic 45.0%
ACTTGAGCAGCAATGGTGAA+AGG - chr3.3:79663654-79663673 MS.gene049294:CDS 45.0%
AGAACAGCATTAAGGGACGT+AGG + chr3.3:79663476-79663495 None:intergenic 45.0%
AGAATTTGAGAGGCAGAGAG+TGG + chr3.3:79663545-79663564 None:intergenic 45.0%
AGTTAGAGACTGGAACGAGT+TGG - chr3.3:79665381-79665400 MS.gene049294:intron 45.0%
ATACCCGAAGCTATATGGCA+AGG - chr3.3:79663506-79663525 MS.gene049294:CDS 45.0%
ATAGGTATAACACACGTCGG+TGG - chr3.3:79664776-79664795 MS.gene049294:intron 45.0%
ATGAAGATAGCATCTCCAGC+CGG + chr3.3:79664821-79664840 None:intergenic 45.0%
CACAATCAAGTGGCTCAACT+AGG - chr3.3:79666848-79666867 MS.gene049294:intron 45.0%
CTCCAACATTTCCCTCATGT+AGG + chr3.3:79664414-79664433 None:intergenic 45.0%
CTGGACGAAAAATGATGCAC+AGG + chr3.3:79663735-79663754 None:intergenic 45.0%
GATGTCATTGCCCTACATGA+GGG - chr3.3:79664400-79664419 MS.gene049294:intron 45.0%
GCTTCCATGTTGTTGAATCG+TGG - chr3.3:79665772-79665791 MS.gene049294:intron 45.0%
GGCCTTGCAAAGTTGTTACA+AGG - chr3.3:79667265-79667284 MS.gene049294:CDS 45.0%
GGTGCAGAAGAGATCATATC+GGG + chr3.3:79664557-79664576 None:intergenic 45.0%
GGTGGCTTATGTATTCATGG+TGG + chr3.3:79665675-79665694 None:intergenic 45.0%
GTTAGAGACTGGAACGAGTT+GGG - chr3.3:79665382-79665401 MS.gene049294:intron 45.0%
TAAAGCCTCAAAGTGAAGCG+AGG - chr3.3:79663414-79663433 MS.gene049294:CDS 45.0%
TATAAGTGGTGAGCAAACGG+AGG + chr3.3:79663619-79663638 None:intergenic 45.0%
TCCACCTTGCCATATAGCTT+CGG + chr3.3:79663513-79663532 None:intergenic 45.0%
TCTTCTGCACCTCAATATCC+AGG - chr3.3:79664566-79664585 MS.gene049294:intron 45.0%
TGCACGAAGACAAGCAAATG+AGG + chr3.3:79666923-79666942 None:intergenic 45.0%
TGCAGTGGACAGTGTTAACA+TGG - chr3.3:79667222-79667241 MS.gene049294:CDS 45.0%
TTAGAGACTGGAACGAGTTG+GGG - chr3.3:79665383-79665402 MS.gene049294:intron 45.0%
TTCTGCAACACACACAACGA+CGG - chr3.3:79665841-79665860 MS.gene049294:intron 45.0%
! AGAATCAATTTTCCGGCCAC+CGG + chr3.3:79667296-79667315 None:intergenic 45.0%
! AGTTGGCTTCCTGTTGGATT+TGG + chr3.3:79665613-79665632 None:intergenic 45.0%
! ATTTTTCGTCCAGCACCATC+AGG - chr3.3:79663742-79663761 MS.gene049294:intron 45.0%
! GAGACTCTAGTTGATGTTGG+TGG - chr3.3:79664458-79664477 MS.gene049294:intron 45.0%
! GCTTCCTGTTGGATTTGGTT+TGG + chr3.3:79665608-79665627 None:intergenic 45.0%
! GTGGAGACTCTAGTTGATGT+TGG - chr3.3:79664455-79664474 MS.gene049294:intron 45.0%
! TGGGGTTGATCACAACTTGT+TGG + chr3.3:79665559-79665578 None:intergenic 45.0%
!! GTTGATGTTGGTGGCAATTC+TGG - chr3.3:79664467-79664486 MS.gene049294:intron 45.0%
!! TGTTGGATTTGGTTTGGCCT+CGG + chr3.3:79665602-79665621 None:intergenic 45.0%
!! ACAAAAAAAAAAAAAAAAAT+TGG - chr3.3:79666576-79666595 MS.gene049294:CDS 5.0%
!!! TTTTTATTTTAATTTATCTA+AGG + chr3.3:79665148-79665167 None:intergenic 5.0%
AACTCGTGCTGCAGGTTTGT+TGG + chr3.3:79665365-79665384 None:intergenic 50.0%
AAGTACTCCCTCACCGATGT+CGG - chr3.3:79663677-79663696 MS.gene049294:intron 50.0%
AGCTTTACCGACATCGGTGA+GGG + chr3.3:79663687-79663706 None:intergenic 50.0%
ATAGCTCAGACATGGGTTCG+TGG + chr3.3:79665909-79665928 None:intergenic 50.0%
CAGGTCAGACCATCATCATC+GGG + chr3.3:79663716-79663735 None:intergenic 50.0%
CATGTAGGGCAATGACATCC+CGG + chr3.3:79664399-79664418 None:intergenic 50.0%
CCACCTTGCCATATAGCTTC+GGG + chr3.3:79663512-79663531 None:intergenic 50.0%
CGTGGAAGACATTGAACCCA+TGG - chr3.3:79665790-79665809 MS.gene049294:intron 50.0%
GAGGCCAAACCAAATCCAAC+AGG - chr3.3:79665601-79665620 MS.gene049294:intron 50.0%
GCCCTACATGAGGGAAATGT+TGG - chr3.3:79664409-79664428 MS.gene049294:intron 50.0%
GCTCTTGTTCCCGATGATGA+TGG - chr3.3:79663704-79663723 MS.gene049294:intron 50.0%
GGAGAATGGGAAAGTTGCTG+TGG - chr3.3:79663391-79663410 MS.gene049294:CDS 50.0%
GGATGTCATTGCCCTACATG+AGG - chr3.3:79664399-79664418 MS.gene049294:intron 50.0%
GTTGAGGACTTGAGCAGCAA+TGG - chr3.3:79663647-79663666 MS.gene049294:CDS 50.0%
GTTGTGGTTCGATCTCAAGG+TGG + chr3.3:79665693-79665712 None:intergenic 50.0%
TGAGCAAACGGAGGATACGT+TGG + chr3.3:79663610-79663629 None:intergenic 50.0%
TTACTCTCATCGGTCTGCTC+CGG + chr3.3:79667335-79667354 None:intergenic 50.0%
TTCTCGAACGGTTCCACAGT+TGG + chr3.3:79664302-79664321 None:intergenic 50.0%
TTGTTACAAGGCTCTTCCGG+TGG - chr3.3:79667277-79667296 MS.gene049294:CDS 50.0%
! AACTGTTGCTGTTGTTCGCG+TGG + chr3.3:79665823-79665842 None:intergenic 50.0%
! ACTCGTGCTGCAGGTTTGTT+GGG + chr3.3:79665364-79665383 None:intergenic 50.0%
! GCTGTTGTTCGCGTGGTTTT+GGG + chr3.3:79665816-79665835 None:intergenic 50.0%
! GTCATGGGTCTCGTTTGTTG+TGG + chr3.3:79665750-79665769 None:intergenic 50.0%
! TGCTGTTGTTCGCGTGGTTT+TGG + chr3.3:79665817-79665836 None:intergenic 50.0%
! TGTTGGGTTGTGCTTGTGGT+GGG + chr3.3:79665348-79665367 None:intergenic 50.0%
! TTGTTGGGTTGTGCTTGTGG+TGG + chr3.3:79665349-79665368 None:intergenic 50.0%
!! ATGGGTTCGTGGCACTGATT+CGG + chr3.3:79665898-79665917 None:intergenic 50.0%
!! GATTTGGTTTGGCCTCGGAT+TGG + chr3.3:79665597-79665616 None:intergenic 50.0%
!! GGTTTGTTGGGTTGTGCTTG+TGG + chr3.3:79665352-79665371 None:intergenic 50.0%
!! TCTTTGTGAACCGGTGTTGC+CGG - chr3.3:79667313-79667332 MS.gene049294:CDS 50.0%
!! TGAAGCGAGGCTTGCCATTT+TGG - chr3.3:79663427-79663446 MS.gene049294:CDS 50.0%
CAGTCTCTAACTCGTGCTGC+AGG + chr3.3:79665373-79665392 None:intergenic 55.0%
CCCGAAGCTATATGGCAAGG+TGG - chr3.3:79663509-79663528 MS.gene049294:CDS 55.0%
CTCTCCATAGTCCGTCCCAA+TGG - chr3.3:79663563-79663582 MS.gene049294:CDS 55.0%
CTGCAGCACGAGTTAGAGAC+TGG - chr3.3:79665371-79665390 MS.gene049294:intron 55.0%
GAACCGTTCGAGAAGCTGCA+CGG - chr3.3:79664308-79664327 MS.gene049294:intron 55.0%
GAGCTTTACCGACATCGGTG+AGG + chr3.3:79663688-79663707 None:intergenic 55.0%
GCAAGCCTCGCTTCACTTTG+AGG + chr3.3:79663422-79663441 None:intergenic 55.0%
GCACTTGAATCAGTTCCGGC+TGG - chr3.3:79664803-79664822 MS.gene049294:intron 55.0%
TCCATAGTCCGTCCCAATGG+CGG - chr3.3:79663566-79663585 MS.gene049294:CDS 55.0%
TCTCCGTGCAGCTTCTCGAA+CGG + chr3.3:79664314-79664333 None:intergenic 55.0%
!!! TTCGCGTGGTTTTGGGCCAT+GGG + chr3.3:79665809-79665828 None:intergenic 55.0%
AACGGCCATGCTCGCAGGTA+CGG + chr3.3:79664257-79664276 None:intergenic 60.0%
ATAGTCCGTCCCAATGGCGG+AGG - chr3.3:79663569-79663588 MS.gene049294:CDS 60.0%
CGCAGTGGAGGATCCAACTG+TGG - chr3.3:79664286-79664305 MS.gene049294:intron 60.0%
GGGCAATGACATCCCGGACA+TGG + chr3.3:79664393-79664412 None:intergenic 60.0%
TACAAGGCTCTTCCGGTGGC+CGG - chr3.3:79667281-79667300 MS.gene049294:CDS 60.0%
TCAGCGTCTCCTCCGCCATT+GGG + chr3.3:79663581-79663600 None:intergenic 60.0%
TCCACTGCGTCTCCCACCAA+CGG + chr3.3:79664275-79664294 None:intergenic 60.0%
TTCAGCGTCTCCTCCGCCAT+TGG + chr3.3:79663582-79663601 None:intergenic 60.0%
!! TCCGCCATTGGGACGGACTA+TGG + chr3.3:79663570-79663589 None:intergenic 60.0%
!!! GTTCGCGTGGTTTTGGGCCA+TGG + chr3.3:79665810-79665829 None:intergenic 60.0%
ACGGCCATGCTCGCAGGTAC+GGG + chr3.3:79664256-79664275 None:intergenic 65.0%
AGGACCCGTACCTGCGAGCA+TGG - chr3.3:79664249-79664268 MS.gene049294:intron 65.0%
CGTCTCCTCCGCCATTGGGA+CGG + chr3.3:79663577-79663596 None:intergenic 65.0%
CTGCGAGCATGGCCGTTGGT+GGG - chr3.3:79664260-79664279 MS.gene049294:intron 65.0%
GTACCTGCGAGCATGGCCGT+TGG - chr3.3:79664256-79664275 MS.gene049294:intron 65.0%
TCGGTCTGCTCCGGCAACAC+CGG + chr3.3:79667326-79667345 None:intergenic 65.0%
! GTTGGTGGGAGACGCAGTGG+AGG - chr3.3:79664274-79664293 MS.gene049294:intron 65.0%
CCACCAACGGCCATGCTCGC+AGG + chr3.3:79664262-79664281 None:intergenic 70.0%
CCTGCGAGCATGGCCGTTGG+TGG - chr3.3:79664259-79664278 MS.gene049294:intron 70.0%
! GCCGTTGGTGGGAGACGCAG+TGG - chr3.3:79664271-79664290 MS.gene049294:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 79663389 79667526 79663389 ID=MS.gene049294
chr3.3 mRNA 79663389 79667526 79663389 ID=MS.gene049294.t1;Parent=MS.gene049294
chr3.3 exon 79667152 79667526 79667152 ID=MS.gene049294.t1.exon1;Parent=MS.gene049294.t1
chr3.3 CDS 79667152 79667526 79667152 ID=cds.MS.gene049294.t1;Parent=MS.gene049294.t1
chr3.3 exon 79666328 79666664 79666328 ID=MS.gene049294.t1.exon2;Parent=MS.gene049294.t1
chr3.3 CDS 79666328 79666664 79666328 ID=cds.MS.gene049294.t1;Parent=MS.gene049294.t1
chr3.3 exon 79666071 79666135 79666071 ID=MS.gene049294.t1.exon3;Parent=MS.gene049294.t1
chr3.3 CDS 79666071 79666135 79666071 ID=cds.MS.gene049294.t1;Parent=MS.gene049294.t1
chr3.3 exon 79663389 79663688 79663389 ID=MS.gene049294.t1.exon4;Parent=MS.gene049294.t1
chr3.3 CDS 79663389 79663688 79663389 ID=cds.MS.gene049294.t1;Parent=MS.gene049294.t1
Gene Sequence

>MS.gene049294

ATGGAGAATGGGAAAGTTGCTGTGGTAAAGCCTCAAAGTGAAGCGAGGCTTGCCATTTTGGAACTTGCACACATTATGAGTGTTCCTACGTCCCTTAATGCTGTTCTCAAAATGAAAATACCCGAAGCTATATGGCAAGGTGGAAAGAACACTCCACTCTCTGCCTCTCAAATTCTCTCCATAGTCCGTCCCAATGGCGGAGGAGACGCTGAAAATCTCCAACGTATCCTCCGTTTGCTCACCACTTATACTATTTTTGTTGAGGACTTGAGCAGCAATGGTGAAAGGAAGTACTCCCTCACCGATGTCGGTAAAGCTCTTGTTCCCGATGATGATGGTCTGACCTGTGCATCATTTTTCGTCCAGCACCATCAGGTTTAAATAAACTTATATACAAATGTTTTTTCTTTTTTATGTTTCTTAAATATAAAATATATAACAAAATGAAATTAAAATATACGACTTTTTCAACAACAGAAAAAGAAGAAAAAAAAGATTAATGGGGATATTCCAACAAATACACAGTTATTATAATTATTATTGGGTTAAATACTAAGAGTACTTAATTTTGTGGAAATGAATATGGTATAAAACTCAACAGTACTATTAGATGTGATCGAAGACATACTAAAAAGAAACACGAGTTTGACATAAAAACTTAAAATATTTAATTTATAAAGAAGATCTCCGACTTATAAGTTGATTTTGTAAAGATAAATTATGTTCTTATCAAAACATGATAGCTATGCCCATATATTATAACAAGTTCGTGCAAAACTTACAAGTTGATTTTTGTATAAACTCATGCAAAACTTTGTTGAGAAAGTACATCTAATAATCTCAAAAAAAATCAAACGTACAGGACCCGTACCTGCGAGCATGGCCGTTGGTGGGAGACGCAGTGGAGGATCCAACTGTGGAACCGTTCGAGAAGCTGCACGGAGAAGCAGCATATGCATATTGCACAAAGGGACCAGAAGAAATGAGTTTGTTTTATGCTTCCATGTCCGGGATGTCATTGCCCTACATGAGGGAAATGTTGGAGAATTATGATGGCTTCAAAGGTGTGGAGACTCTAGTTGATGTTGGTGGCAATTCTGGTGTGAGTCTCAACATGATTATGAACAAATATCCAAACATACTCAAAGGCATCAATTTTGATCTTCCCGATATGATCTCTTCTGCACCTCAATATCCAGGTAATTAGTCTATTTTTTGGGTCACTACCATTTTGGAACCTAATTAGTCTAATTTAAAAAAATAAAGTTAGATTGACAAATATAGAGGACCGACCATGTTAGTTTTTTGGTTTGTCCACGGACTAATTTTATTAAATTTGAGATTACGAACAAATTTATTCAATTTATTTAACTTTTGTGGCATGTATATAGGTATAACACACGTCGGTGGTGATGCACTTGAATCAGTTCCGGCTGGAGATGCTATCTTCATTAAGGTGTCTCTTTCACTACATTAGTATTTTACCTACTTATCTCCAAAATATTTTTCAACTTTAGCACCATAGTAAGATATGATTTCCTCCCTTCTCAAAAATAGAGATATGATTTTCCACTATCTATTTACTTTTTTATAACCAAAATTTTATTATTAGGAGTAAACTAAACATAGTTGCCAATAACTAATGTTCAAACATACATCAGCCCATAATACAAAATGGTTGCTAAGATACTATTGTTACTTACTTTTTTGTTTTTTTTTGGGTAAATATGATGCAGATGATAAACCCACTCCAACACCTTAGATAAATTAAAATAAAAAAAAGAATAATACAAAAGGTCAGGGACATAAATCTGACTCAATGAAAAGTAAAAAAATGACACCAAAAATTTTTAAACCAACCAGAAAGGATAATACAACCAACTCAAAGGGGATAAATCAATCAGACAAAGCAAAAAGTTACCCGTCATAGAAACCAAGATTTAAGGTGAACGAATACCCACCACAAGCACAACCCAACAAACCTGCAGCACGAGTTAGAGACTGGAACGAGTTGGGGCTCAAACTAGTTACAACAAACCAAGTCATAATGACACAGAAGCAACAACAACTAAGATCGAATTCACTGTTAAAAACCAACAAATTAAAGATTCCAATGAAAAGCAACCCCAAATTAGAATAGTGTCGAACATCATCATAGTGTATAATACCAACAAGTTGTGATCAACCCCAACCAAATAAAATTGTCCAATCCGAGGCCAAACCAAATCCAACAGGAAGCCAACTAAATCTAAAGCTACACGATTTAATCTCAACAAGGTGGAACCACCATGAATACATAAGCCACCTTGAGATCGAACCACAACAAAAAAACCACCACAAAAGCAAGTAAGTCTGAATCCACAACAAACGAGACCCATGACAAGCTTCCATGTTGTTGAATCGTGGAAGACATTGAACCCATGGCCCAAAACCACGCGAACAACAGCAACAGTTCTGCAACACACACAACGACGGCAACAAACAACCACCCAAACTCAGAATATATCCGAATCAGTGCCACGAACCCATGTCTGAGCTATCAATCTCATAATATACTGCATATTTTTTAACGTTAGACTATTATAGCAATAAAAGTAGTGTTATTTGAACAACCAAATGAGACAACTTAACCTATGTGACAACTTTTTTTTTTCTCTTTTCATTGGTCAAAAACAATGGAGTGGGAAAAAAAAAAAAGAGAATAAGAGTATAATGTGAGTATGAGAGAGAAAGTTGTCAAAAAAATTGTTAAAAAGTGATTGTACAAATATCATTTCCCTAACAATAACTACGCATTTTACATTTTTCTTTAGACGAGATTTAAACTATGGCACGTCGTCTATATGTATTTTATACTTCTACACTGCTTATAAGTCAATTAATTATGATTCGTTTGTTATAAGTATGTCTTTGTAATAGAAAACTGGTGTAGTGGTACAATTGTTTTATTTGTGACAATGAGGTTGCTCTTCTTAAAAAAAAAATAAGTATGTCTTTGTAAGCTTAACAATTTAATTACTTTTTAAAATTAAAATTTACATCATAATTTAAGGGGAAAAAACTAAATAGAAATTTCAGTCATTCTTTTTTAAATTAATTTTTCTTGAGTAGTATAGATAAAAAAAATTAAATGAAAAATTTAAACTCGTTAATAAAAATGAAAAAGATAAATTAAAATAATTCAAATACAAAAAAAAAAAAAAAAATTGGATAGACAGCTTTGTGGCGTGTTTCCGCTAGTTTCTTATAAAAAATACATATTTACCAAATAAGTGAAAAGAAAGATCATCATTCGATTTGATGCTCAACTCTTTTAATCGAGTGAAATTGAGTTTACTGCCAAAAAAACAAGATCATCATTAAAAAAAACTAATTAATTAATGCATATTTTACAGTACATCATTTTCTTTTTTTAAAAGAAGAGATCTTATATCATTTCACCGGTCAAAACGTGTTCAACACAATCAAGTGGCTCAACTAGGAGCTGAAAACTAGCTGACAATAGGGCCACCTTTGCTAACTTATGAGCAACCTCATTTGCTTGTCTTCGTGCAAACTCAACACTAGAGTTTTCATAATACAGTACTCACTAAATACGGATTTACATTCATTAATAATAGCACCATATTCCTTATAATCTTGCTTATTTTACATTACATCATATCATTTGATACTTTAGTTTTTTTTTAAGGAGATACTTTAGATATTTAAAACTCTTTAATTATAACTTTTTAATTCTATCAATTATAATTTTGTCAAAAAAAAAATCTATCAATTATAATTAATAGTTTTTTTTAGAGAATCAATTATGATTAATAGTATAATTATTGTTTTGCAGTGGACAGTGTTAACATGGACAGATGAAGAATTCAAGAAGGCCTTGCAAAGTTGTTACAAGGCTCTTCCGGTGGCCGGAAAATTGATTCTTTGTGAACCGGTGTTGCCGGAGCAGACCGATGAGAGTAAAAGAACAAGAGCATTGTTGGCGGCTGACATATGGATAATGACAATGTATAGAACTAAGGGAAAACACAGAACCGAAGAAGAATTCAAACAACTTGGCATTTCTGCTGGTTTTAAAAGTTTTCGTGCCTTCCATATTGATCCTTATTTGCCTGTACTTGAATTTCATAAATGA
Protein sequence

>MS.gene049294.t1

MENGKVAVVKPQSEARLAILELAHIMSVPTSLNAVLKMKIPEAIWQGGKNTPLSASQILSIVRPNGGGDAENLQRILRLLTTYTIFVEDLSSNGERKYSLTDVGKALVPDDDGLTCASFFVQHHQDPYLRAWPLVGDAVEDPTVEPFEKLHGEAAYAYCTKGPEEMSLFYASMSGMSLPYMREMLENYDGFKGVETLVDVGGNSGVSLNMIMNKYPNILKGINFDLPDMISSAPQYPGITHVGGDALESVPAGDAIFIKWTVLTWTDEEFKKALQSCYKALPVAGKLILCEPVLPEQTDESKRTRALLAADIWIMTMYRTKGKHRTEEEFKQLGISAGFKSFRAFHIDPYLPVLEFHK