AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06417

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06417.t1 MTR_3g096050 99.441 358 2 0 1 358 1 358 0.0 741
MS.gene06417.t1 MTR_3g096070 82.402 358 40 1 1 358 1 335 0.0 600
MS.gene06417.t1 MTR_3g096050 98.473 262 4 0 1 262 1 262 0.0 533
MS.gene06417.t1 MTR_2g072790 58.790 347 142 1 12 358 9 354 5.99e-159 449
MS.gene06417.t1 MTR_3g092900 37.429 350 210 6 14 358 18 363 2.11e-71 227
MS.gene06417.t1 MTR_5g098170 36.286 350 215 5 14 358 17 363 2.71e-68 219
MS.gene06417.t1 MTR_0591s0010 36.207 348 207 7 20 358 36 377 8.46e-67 215
MS.gene06417.t1 MTR_8g068750 34.203 345 218 5 20 358 36 377 4.96e-66 213
MS.gene06417.t1 MTR_7g118320 33.913 345 219 4 20 358 21 362 5.62e-66 213
MS.gene06417.t1 MTR_8g068690 34.557 327 205 5 20 340 35 358 4.10e-63 206
MS.gene06417.t1 MTR_1g096310 36.267 375 210 11 2 358 9 372 9.54e-63 205
MS.gene06417.t1 MTR_8g068870 33.616 354 220 7 14 358 16 363 1.11e-62 204
MS.gene06417.t1 MTR_7g118300 33.523 352 228 4 10 358 27 375 1.47e-62 204
MS.gene06417.t1 MTR_7g012020 36.314 369 216 9 2 358 8 369 2.01e-62 204
MS.gene06417.t1 MTR_1g036490 35.457 361 217 9 9 358 15 370 9.50e-62 202
MS.gene06417.t1 MTR_1g036460 35.734 361 216 9 9 358 15 370 3.98e-61 201
MS.gene06417.t1 MTR_7g011900 36.658 371 212 11 2 358 9 370 1.30e-60 199
MS.gene06417.t1 MTR_7g011990 36.261 353 203 8 17 358 26 367 4.98e-60 197
MS.gene06417.t1 MTR_7g012070 34.316 373 223 9 2 358 9 375 4.56e-59 195
MS.gene06417.t1 MTR_1g036510 35.556 360 218 8 9 358 29 384 1.22e-58 194
MS.gene06417.t1 MTR_2g055940 35.246 366 219 10 3 358 6 363 2.48e-58 193
MS.gene06417.t1 MTR_7g012040 35.310 371 216 12 2 358 8 368 3.28e-58 193
MS.gene06417.t1 MTR_6g078850 34.024 338 212 5 14 343 34 368 9.79e-58 195
MS.gene06417.t1 MTR_3g021430 38.567 293 167 6 73 358 71 357 1.49e-57 191
MS.gene06417.t1 MTR_7g012090 37.288 295 170 6 73 358 87 375 5.08e-56 187
MS.gene06417.t1 MTR_3g021440 37.543 293 170 6 73 358 84 370 6.23e-56 187
MS.gene06417.t1 MTR_8g068730 32.424 330 182 7 20 343 36 330 7.62e-52 176
MS.gene06417.t1 MTR_0017s0100 33.146 356 225 9 7 355 16 365 1.19e-51 176
MS.gene06417.t1 MTR_8g068570 34.385 317 166 8 20 327 36 319 2.67e-51 173
MS.gene06417.t1 MTR_8g024160 35.606 264 167 3 95 358 68 328 4.50e-51 173
MS.gene06417.t1 MTR_4g038440 32.022 356 229 9 7 355 16 365 8.26e-48 166
MS.gene06417.t1 MTR_0079s0070 32.523 329 212 8 31 355 9 331 5.71e-47 162
MS.gene06417.t1 MTR_8g068690 34.387 253 158 4 20 266 35 285 1.71e-46 160
MS.gene06417.t1 MTR_7g012020 36.431 269 161 6 2 262 8 274 9.82e-43 150
MS.gene06417.t1 MTR_1g050220 31.138 334 170 8 17 342 6 287 6.12e-40 143
MS.gene06417.t1 MTR_8g068600 34.783 230 142 4 37 260 27 254 2.16e-39 141
MS.gene06417.t1 MTR_1g036510 35.249 261 159 6 9 261 29 287 1.42e-37 137
MS.gene06417.t1 MTR_3g083620 29.787 329 214 11 32 354 40 357 7.53e-37 136
MS.gene06417.t1 MTR_8g068740 31.660 259 137 6 20 272 36 260 2.17e-36 133
MS.gene06417.t1 MTR_1g076940 27.976 336 222 10 31 355 32 358 1.51e-35 133
MS.gene06417.t1 MTR_7g014570 28.732 355 234 11 10 357 9 351 1.69e-35 132
MS.gene06417.t1 MTR_7g012020 34.286 245 151 6 2 238 8 250 2.29e-33 124
MS.gene06417.t1 MTR_4g088340 27.647 340 221 9 29 357 7 332 1.07e-32 125
MS.gene06417.t1 MTR_4g038440 32.432 259 165 6 7 259 16 270 1.31e-32 123
MS.gene06417.t1 MTR_7g014510 29.573 328 210 10 31 350 32 346 1.78e-32 124
MS.gene06417.t1 MTR_7g024520 28.024 339 214 11 29 356 29 348 3.42e-32 124
MS.gene06417.t1 MTR_4g088345 28.955 335 223 9 29 357 30 355 5.73e-32 123
MS.gene06417.t1 MTR_4g079160 29.143 350 223 12 12 346 4 343 5.98e-32 123
MS.gene06417.t1 MTR_5g074600 27.500 320 218 8 31 343 32 344 7.26e-32 123
MS.gene06417.t1 MTR_7g024500 28.235 340 212 11 29 356 29 348 1.79e-31 122
MS.gene06417.t1 MTR_4g033015 30.172 348 221 11 24 357 23 362 4.53e-31 121
MS.gene06417.t1 MTR_5g074680 27.747 364 243 12 2 357 8 359 7.93e-31 120
MS.gene06417.t1 MTR_5g074580 28.125 352 229 12 2 343 8 345 8.01e-31 120
MS.gene06417.t1 MTR_4g088200 28.487 337 223 11 31 357 32 360 9.40e-31 120
MS.gene06417.t1 MTR_4g033200 29.885 348 222 11 24 357 23 362 6.82e-30 117
MS.gene06417.t1 MTR_8g068620 46.364 110 58 1 150 259 2 110 3.01e-28 107
MS.gene06417.t1 MTR_1g036510 33.193 238 149 6 9 238 29 264 6.43e-28 110
MS.gene06417.t1 MTR_4g088190 29.118 340 220 10 31 357 32 363 8.96e-28 112
MS.gene06417.t1 MTR_4g033150 28.319 339 223 10 31 357 32 362 2.11e-26 108
MS.gene06417.t1 MTR_5g074540 25.862 348 224 12 2 343 7 326 3.07e-26 107
MS.gene06417.t1 MTR_5g074610 27.273 319 191 10 31 343 28 311 5.65e-25 103
MS.gene06417.t1 MTR_4g033170 27.964 329 219 11 24 343 23 342 2.64e-21 94.0
MS.gene06417.t1 MTR_1g076930 26.160 237 163 7 29 259 7 237 1.75e-18 84.0
MS.gene06417.t1 MTR_4g033085 27.660 329 220 11 24 343 23 342 2.12e-18 85.5
MS.gene06417.t1 MTR_8g068760 35.000 100 64 1 259 358 135 233 6.51e-12 65.1
MS.gene06417.t1 MTR_0794s0020 28.125 224 146 8 31 245 32 249 4.51e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06417.t1 AT3G53140 57.550 351 145 1 12 358 9 359 4.45e-152 432
MS.gene06417.t1 AT5G54160 40.719 334 189 6 14 343 18 346 6.98e-76 238
MS.gene06417.t1 AT1G33030 34.985 343 214 7 23 358 10 350 4.06e-58 192
MS.gene06417.t1 AT1G51990 34.812 293 184 4 53 340 54 344 1.39e-57 191
MS.gene06417.t1 AT1G51990 35.154 293 183 4 53 340 54 344 5.65e-57 189
MS.gene06417.t1 AT1G77520 31.805 349 223 7 22 358 36 381 5.45e-53 179
MS.gene06417.t1 AT1G77530 34.091 352 211 10 22 358 36 381 3.97e-44 156
MS.gene06417.t1 AT1G21100 32.778 360 229 9 8 358 18 373 4.16e-41 148
MS.gene06417.t1 AT5G53810 33.025 324 201 8 29 339 39 359 1.29e-40 147
MS.gene06417.t1 AT1G63140 31.322 348 226 7 22 358 36 381 4.30e-40 145
MS.gene06417.t1 AT1G63140 31.322 348 226 7 22 358 56 401 8.32e-40 145
MS.gene06417.t1 AT1G21120 32.778 360 229 10 8 358 18 373 1.15e-39 144
MS.gene06417.t1 AT1G21130 32.222 360 231 9 8 358 18 373 1.30e-39 144
MS.gene06417.t1 AT1G21120 32.778 360 229 10 8 358 66 421 5.51e-39 144
MS.gene06417.t1 AT1G21110 32.222 360 231 9 8 358 18 373 8.35e-39 142
MS.gene06417.t1 AT1G76790 31.476 359 229 9 12 358 12 365 2.18e-38 140
MS.gene06417.t1 AT5G37170 38.660 194 115 4 167 358 43 234 5.13e-38 136
MS.gene06417.t1 AT5G37170 39.362 188 110 4 173 358 1 186 1.31e-37 134
MS.gene06417.t1 AT5G37170 38.660 194 115 4 167 358 143 334 6.33e-37 136
MS.gene06417.t1 AT1G62900 38.220 191 117 1 168 358 16 205 1.35e-34 126
MS.gene06417.t1 AT1G33030 34.263 251 157 6 23 266 10 259 4.25e-34 127
MS.gene06417.t1 AT1G33030 34.836 244 151 6 23 259 10 252 4.56e-34 127
MS.gene06417.t1 AT4G35160 29.752 363 234 10 1 348 15 371 6.31e-34 129
MS.gene06417.t1 AT4G35150 26.891 357 209 9 1 348 1 314 1.00e-30 119
MS.gene06417.t1 AT1G63140 32.129 249 156 7 22 259 56 302 1.15e-23 99.8
MS.gene06417.t1 AT1G21130 31.206 282 180 8 8 278 18 296 2.42e-22 95.9
MS.gene06417.t1 AT1G77530 32.314 229 140 7 22 238 36 261 2.11e-16 78.6
MS.gene06417.t1 AT1G63140 30.131 229 147 7 21 238 55 281 3.21e-14 72.8

Find 100 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCGAGGCTTGCCATTT+TGG 0.196493 3.2:-80239296 MS.gene06417:CDS
GTTGATGTTGGTGGCAATTC+TGG 0.233978 3.2:-80238256 MS.gene06417:CDS
TCCGCCATTGGGACGGACTA+TGG 0.310272 3.2:+80239156 None:intergenic
TAAAACAAACTCATTTCTTC+TGG 0.323627 3.2:+80238361 None:intergenic
AATTCAAGTACAGGCAAATA+AGG 0.328492 3.2:+80235163 None:intergenic
TGAAAGTACCTGAAGCTATA+TGG 0.371128 3.2:-80239222 MS.gene06417:CDS
CCACCTTGCCATATAGCTTC+AGG 0.378883 3.2:+80239214 None:intergenic
TTGATGCCTTTGAGTATGTT+TGG 0.379016 3.2:+80238202 None:intergenic
GCAAGCCTCGCTTCACTTTG+AGG 0.394145 3.2:+80239304 None:intergenic
AAAATTGATTCTTTGTGAAC+CGG 0.399849 3.2:-80235353 MS.gene06417:CDS
CAGGCAAATAAGGATCAATA+TGG 0.400215 3.2:+80235173 None:intergenic
TCTTTGTGAACCGGTGTTGC+CGG 0.403316 3.2:-80235344 MS.gene06417:CDS
TGGGGATGCTATCTTCATTA+AGG 0.409531 3.2:-80237868 MS.gene06417:intron
CATTGTTGGCGGCTGACATA+TGG 0.414881 3.2:-80235291 MS.gene06417:CDS
TTCAGCGTCTCCTCCGCCAT+TGG 0.420478 3.2:+80239144 None:intergenic
AAGTTGTTTGAATTCTTCTT+CGG 0.424797 3.2:+80235231 None:intergenic
TAAAAGAACAAGAGCATTGT+TGG 0.438527 3.2:-80235305 MS.gene06417:CDS
TTATTTAAACCTGATGGTGC+TGG 0.448459 3.2:+80238972 None:intergenic
AACGGCCATGCTCGCAGGTA+CGG 0.451973 3.2:+80238469 None:intergenic
TAGTAAACAATAATGGAGAA+TGG 0.453157 3.2:-80239346 None:intergenic
AGTAAACAATAATGGAGAAT+GGG 0.454231 3.2:-80239345 None:intergenic
TCAGCGTCTCCTCCGCCATT+GGG 0.454837 3.2:+80239145 None:intergenic
AATGACAATGTATAGAACTA+AGG 0.459777 3.2:-80235266 MS.gene06417:CDS
CACTTGAATCAGTTCCGGCT+GGG 0.462198 3.2:-80237887 MS.gene06417:CDS
CCTGCGAGCATGGCCGTTGG+TGG 0.463499 3.2:-80238464 MS.gene06417:CDS
AATGTGTGCAAGTTCCAAAA+TGG 0.463723 3.2:+80239282 None:intergenic
AAACAACTTGGCATTTCTGC+TGG 0.463760 3.2:-80235217 MS.gene06417:CDS
GAGAATTATGATGGCTTCAA+AGG 0.465146 3.2:-80238292 MS.gene06417:CDS
TTACTCTCATCGGTCTGCTC+CGG 0.470793 3.2:+80235325 None:intergenic
TGATGCACTTGAATCAGTTC+CGG 0.476408 3.2:-80237892 MS.gene06417:CDS
AGAATTTGAGAGGCAGAGAG+TGG 0.478385 3.2:+80239181 None:intergenic
CCACCAACGGCCATGCTCGC+AGG 0.480027 3.2:+80238464 None:intergenic
TAGTATAAGTGGTGAGCAAA+CGG 0.493082 3.2:+80239104 None:intergenic
GCATATGCATATTGCACAAA+GGG 0.496481 3.2:-80238385 MS.gene06417:CDS
CATTTATGAAATTCAAGTAC+AGG 0.499673 3.2:+80235154 None:intergenic
GAAATGTTGGAGAATTATGA+TGG 0.500624 3.2:-80238301 MS.gene06417:CDS
TACAAGGCTCTTCCAGTGGC+CGG 0.508003 3.2:-80235376 MS.gene06417:CDS
ACGGCCATGCTCGCAGGTAC+GGG 0.509344 3.2:+80238470 None:intergenic
TCTTCTGCACCTCAATATCC+AGG 0.511364 3.2:-80238157 MS.gene06417:intron
GCACTTGAATCAGTTCCGGC+TGG 0.511694 3.2:-80237888 MS.gene06417:CDS
GACTAATTACCTGGATATTG+AGG 0.516427 3.2:+80238148 None:intergenic
GGCCTTGCAAAGTTGTTACA+AGG 0.518740 3.2:-80235392 MS.gene06417:CDS
AGGTGCAGAAGAGATCATAT+CGG 0.519685 3.2:+80238168 None:intergenic
TTCTCGAACGGTTCCACAGT+TGG 0.522298 3.2:+80238424 None:intergenic
TCCAACATTTCCCTCATGTA+GGG 0.523535 3.2:+80238313 None:intergenic
TCTCCGTGCAGCTTCTCGAA+CGG 0.525123 3.2:+80238412 None:intergenic
GCCCTACATGAGGGAAATGT+TGG 0.530544 3.2:-80238314 MS.gene06417:CDS
CTGCGAGCATGGCCGTTGGT+GGG 0.530884 3.2:-80238463 MS.gene06417:CDS
TGCAGTGGACAGTGTTAACA+TGG 0.535443 3.2:-80235435 MS.gene06417:intron
TCGGTCTGCTCCGGCAACAC+CGG 0.535499 3.2:+80235334 None:intergenic
GGGCAATGACATCCCGGACA+TGG 0.544215 3.2:+80238333 None:intergenic
CAGGTCAGACCATCATCATC+GGG 0.545460 3.2:+80239010 None:intergenic
CGTCTCCTCCGCCATTGGGA+CGG 0.546520 3.2:+80239149 None:intergenic
GCTCTTGTTCCCGATGATGA+TGG 0.547808 3.2:-80239019 MS.gene06417:CDS
AGGACCCGTACCTGCGAGCA+TGG 0.558958 3.2:-80238474 MS.gene06417:CDS
ATGACAATGTATAGAACTAA+GGG 0.561414 3.2:-80235265 MS.gene06417:CDS
GGTGCAGAAGAGATCATATC+GGG 0.566072 3.2:+80238169 None:intergenic
AGCCTTGTAACAACTTTGCA+AGG 0.570449 3.2:+80235390 None:intergenic
ACAGGTCAGACCATCATCAT+CGG 0.570773 3.2:+80239009 None:intergenic
CATGTAGGGCAATGACATCC+CGG 0.570892 3.2:+80238327 None:intergenic
GCCGTTGGTGGGAGACGCAG+TGG 0.570986 3.2:-80238452 MS.gene06417:CDS
ACTTGAATCAGTTCCGGCTG+GGG 0.571520 3.2:-80237886 MS.gene06417:CDS
CTCCAACATTTCCCTCATGT+AGG 0.575549 3.2:+80238312 None:intergenic
TCCATAGTCCGTCCCAATGG+CGG 0.577664 3.2:-80239157 MS.gene06417:CDS
ACTTGAGCAGCAATGGTGAA+AGG 0.580995 3.2:-80239069 MS.gene06417:CDS
GTTGAGGACTTGAGCAGCAA+TGG 0.582872 3.2:-80239076 MS.gene06417:CDS
AGCTTTACCGACATCGGTGA+GGG 0.585301 3.2:+80239039 None:intergenic
CTCTCCATAGTCCGTCCCAA+TGG 0.588927 3.2:-80239160 MS.gene06417:CDS
AAGTACTCCCTCACCGATGT+CGG 0.589045 3.2:-80239046 MS.gene06417:CDS
GAAGAAGAATTCAAACAACT+TGG 0.589425 3.2:-80235229 MS.gene06417:CDS
GTGGAGACTCTAGTTGATGT+TGG 0.592031 3.2:-80238268 MS.gene06417:CDS
GTACCTGAAGCTATATGGCA+AGG 0.593518 3.2:-80239217 MS.gene06417:CDS
AAGAACAAGAGCATTGTTGG+CGG 0.593672 3.2:-80235302 MS.gene06417:CDS
GTTGGTGGGAGACGCAGTGG+AGG 0.598693 3.2:-80238449 MS.gene06417:CDS
CAAATAAGGATCAATATGGA+AGG 0.598974 3.2:+80235177 None:intergenic
GGATGTCATTGCCCTACATG+AGG 0.599139 3.2:-80238324 MS.gene06417:CDS
AAATATCCAAACATACTCAA+AGG 0.599530 3.2:-80238208 MS.gene06417:CDS
ATAGTCCGTCCCAATGGCGG+AGG 0.606262 3.2:-80239154 MS.gene06417:CDS
AACAAGAGCTTTACCGACAT+CGG 0.606967 3.2:+80239033 None:intergenic
TCCACTGCGTCTCCCACCAA+CGG 0.608024 3.2:+80238451 None:intergenic
ATGAAGATAGCATCCCCAGC+CGG 0.608469 3.2:+80237873 None:intergenic
TTATGATGGCTTCAAAGGTG+TGG 0.610913 3.2:-80238287 MS.gene06417:CDS
GACAGATGAAGAATTCAAGA+AGG 0.615326 3.2:-80235413 MS.gene06417:CDS
GATGTCATTGCCCTACATGA+GGG 0.616477 3.2:-80238323 MS.gene06417:CDS
TTGTTACAAGGCTCTTCCAG+TGG 0.616923 3.2:-80235380 MS.gene06417:CDS
GACTATGGAGAGAATTTGAG+AGG 0.637733 3.2:+80239171 None:intergenic
AGCATATGCATATTGCACAA+AGG 0.638121 3.2:-80238386 MS.gene06417:CDS
GAACCGTTCGAGAAGCTGCA+CGG 0.649830 3.2:-80238415 MS.gene06417:CDS
GTACCTGCGAGCATGGCCGT+TGG 0.655083 3.2:-80238467 MS.gene06417:CDS
GAGCTTTACCGACATCGGTG+AGG 0.661236 3.2:+80239038 None:intergenic
TGAGCAAACGGAGGATACGT+TGG 0.661794 3.2:+80239116 None:intergenic
GAGACTCTAGTTGATGTTGG+TGG 0.662906 3.2:-80238265 MS.gene06417:CDS
GGAGAATGGGAAAGTTGCTG+TGG 0.664770 3.2:-80239332 MS.gene06417:CDS
AGAACAGCATTAAGGGACGT+AGG 0.670135 3.2:+80239250 None:intergenic
CGCAGTGGAGGATCCAACTG+TGG 0.674969 3.2:-80238437 MS.gene06417:CDS
CCTGAAGCTATATGGCAAGG+TGG 0.693132 3.2:-80239214 MS.gene06417:CDS
TAAAGCCTCAAAGTGAAGCG+AGG 0.698513 3.2:-80239309 MS.gene06417:CDS
TATAAGTGGTGAGCAAACGG+AGG 0.715321 3.2:+80239107 None:intergenic
TATATAGGTATAACACACGT+CGG 0.727621 3.2:-80237918 MS.gene06417:intron
ATAGGTATAACACACGTCGG+TGG 0.737739 3.2:-80237915 MS.gene06417:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTACATCATAATTTA+AGG - chr3.2:80238233-80238252 MS.gene06417:CDS 10.0%
!! AAATTTACATCATAATTTAA+GGG - chr3.2:80238234-80238253 MS.gene06417:CDS 10.0%
!! ACAGTTATTATAATTATTAT+TGG - chr3.2:80235674-80235693 MS.gene06417:intron 10.0%
!! CAGTTATTATAATTATTATT+GGG - chr3.2:80235675-80235694 MS.gene06417:intron 10.0%
!!! ATAACCAAAATTTTATTATT+AGG - chr3.2:80236775-80236794 MS.gene06417:intron 10.0%
!!! TTTTTTAAATTAGACTAATT+AGG + chr3.2:80236393-80236412 None:intergenic 10.0%
!! AAGAAGAAAAAAAAGATTAA+TGG - chr3.2:80235633-80235652 MS.gene06417:intron 15.0%
!! AATTTACATCATAATTTAAG+GGG - chr3.2:80238235-80238254 MS.gene06417:CDS 15.0%
!! TCCTTAAAAAAATATATTAG+TGG - chr3.2:80236449-80236468 MS.gene06417:intron 15.0%
!! TTAGACTATTATAACAATAA+GGG - chr3.2:80237776-80237795 MS.gene06417:intron 15.0%
!!! AAAGTATCAAATGATATTTT+TGG + chr3.2:80238876-80238895 None:intergenic 15.0%
!!! ACTTACTTTTTTGTTTTTTT+GGG - chr3.2:80236882-80236901 MS.gene06417:intron 15.0%
!!! CTAATATATTTTTTTAAGGA+TGG + chr3.2:80236449-80236468 None:intergenic 15.0%
!!! TACTCCTAATAATAAAATTT+TGG + chr3.2:80236782-80236801 None:intergenic 15.0%
!!! TACTTACTTTTTTGTTTTTT+TGG - chr3.2:80236881-80236900 MS.gene06417:intron 15.0%
!!! TATTTTTTATAAGAAACTAG+CGG + chr3.2:80238436-80238455 None:intergenic 15.0%
!!! TCCACTAATATATTTTTTTA+AGG + chr3.2:80236453-80236472 None:intergenic 15.0%
!!! TTCAAATTATTTAACTTTTG+TGG - chr3.2:80236542-80236561 MS.gene06417:intron 15.0%
!! AAAAAAAAATACAAAAGGTC+AGG - chr3.2:80236963-80236982 MS.gene06417:intron 20.0%
!! AAAAAAAATACAAAAGGTCA+GGG - chr3.2:80236964-80236983 MS.gene06417:intron 20.0%
!! AATTTAATAAAATTAGTCCG+TGG + chr3.2:80236502-80236521 None:intergenic 20.0%
!! ATAAAAAAGTAAGTAGATAG+TGG + chr3.2:80236757-80236776 None:intergenic 20.0%
!! ATAAGTTTATTTAAACCTGA+TGG + chr3.2:80235524-80235543 None:intergenic 20.0%
!! GTAAAATAAGCAAGATTATA+AGG + chr3.2:80238825-80238844 None:intergenic 20.0%
!! GTTAGACTATTATAACAATA+AGG - chr3.2:80237775-80237794 MS.gene06417:intron 20.0%
!! TACAAAATCAACTTATAAGT+CGG + chr3.2:80235843-80235862 None:intergenic 20.0%
!! TAGACTATTATAACAATAAG+GGG - chr3.2:80237777-80237796 MS.gene06417:intron 20.0%
!! TATAATAACTGTGTATTTGT+TGG + chr3.2:80235666-80235685 None:intergenic 20.0%
!! TATGTTTGAACATTAGTTAT+TGG + chr3.2:80236820-80236839 None:intergenic 20.0%
!!! AAAATATTTTGGAGATAAGT+AGG + chr3.2:80236672-80236691 None:intergenic 20.0%
!!! ACGAACTTGTTATAATATAT+GGG + chr3.2:80235904-80235923 None:intergenic 20.0%
!!! AGGTAATTAGTCTATTTTTT+GGG - chr3.2:80236350-80236369 MS.gene06417:intron 20.0%
!!! GATACTTTAGATTTTCTTTA+AGG - chr3.2:80238888-80238907 MS.gene06417:intron 20.0%
!!! GCTAAAGTTGAAAAATATTT+TGG + chr3.2:80236683-80236702 None:intergenic 20.0%
!!! TAATGATGATCTTGTTTTTT+TGG + chr3.2:80238541-80238560 None:intergenic 20.0%
!!! TAATTTTGTGGAAATGAATA+TGG - chr3.2:80235716-80235735 MS.gene06417:intron 20.0%
!!! TATATTTTTTTAAGGATGGT+CGG + chr3.2:80236445-80236464 None:intergenic 20.0%
!!! TTTTAATTTATCTAAGGTGT+TGG + chr3.2:80236940-80236959 None:intergenic 20.0%
!!! TTTTTTTTCTCTCTTTTCAT+TGG - chr3.2:80237845-80237864 MS.gene06417:intron 20.0%
! AAAAATCAGACAAGGAAAAA+GGG - chr3.2:80237194-80237213 MS.gene06417:intron 25.0%
! AAATATCCAAACATACTCAA+AGG - chr3.2:80236279-80236298 MS.gene06417:intron 25.0%
! AAGCAAGATTATAAGGAATA+TGG + chr3.2:80238818-80238837 None:intergenic 25.0%
! AAGTTGTTTGAATTCTTCTT+CGG + chr3.2:80239259-80239278 None:intergenic 25.0%
! AATGACAATGTATAGAACTA+AGG - chr3.2:80239221-80239240 MS.gene06417:CDS 25.0%
! ATGACAATGTATAGAACTAA+GGG - chr3.2:80239222-80239241 MS.gene06417:CDS 25.0%
! CAAAAAATAGACTAATTACC+TGG + chr3.2:80236351-80236370 None:intergenic 25.0%
! CATTTATGAAATTCAAGTAC+AGG + chr3.2:80239336-80239355 None:intergenic 25.0%
! CTCAACAAAAATAGTATAAG+TGG + chr3.2:80235397-80235416 None:intergenic 25.0%
! GTTAGATTGACAAATATTAG+AGG - chr3.2:80236418-80236437 MS.gene06417:intron 25.0%
! TAAAACAAACTCATTTCTTC+TGG + chr3.2:80236129-80236148 None:intergenic 25.0%
! TCAAAAAAAATCAAACGTAC+AGG - chr3.2:80235993-80236012 MS.gene06417:intron 25.0%
! TTAAATCTTGGTTTCTATGA+CGG + chr3.2:80237117-80237136 None:intergenic 25.0%
! TTCATAGTACTCACTAAATT+CGG - chr3.2:80238769-80238788 MS.gene06417:intron 25.0%
!! ATAAGTTAAGTTGTCTCATT+TGG + chr3.2:80237819-80237838 None:intergenic 25.0%
!! GATCTTTCTTTTCACTTATT+TGG + chr3.2:80238467-80238486 None:intergenic 25.0%
!! TAGCAACCATTTTGTATTAT+GGG + chr3.2:80236849-80236868 None:intergenic 25.0%
!! TTAGCAACCATTTTGTATTA+TGG + chr3.2:80236850-80236869 None:intergenic 25.0%
!! TTCACAAAGAATCAATTTTC+CGG + chr3.2:80239133-80239152 None:intergenic 25.0%
!! TTTTCATTGGTCAAAAACAA+TGG - chr3.2:80237858-80237877 MS.gene06417:intron 25.0%
!!! ACTAAGAGTACTTAATTTTG+TGG - chr3.2:80235704-80235723 MS.gene06417:intron 25.0%
!!! ATATCTCTATTTTTGAGAAG+GGG + chr3.2:80236728-80236747 None:intergenic 25.0%
!!! ATTGGACAATTTTATTTGGT+TGG + chr3.2:80237369-80237388 None:intergenic 25.0%
!!! CACGAACTTGTTATAATATA+TGG + chr3.2:80235905-80235924 None:intergenic 25.0%
!!! CACTTATACTATTTTTGTTG+AGG - chr3.2:80235395-80235414 MS.gene06417:CDS 25.0%
!!! CAGGTAATTAGTCTATTTTT+TGG - chr3.2:80236349-80236368 MS.gene06417:intron 25.0%
!!! CATATCTCTATTTTTGAGAA+GGG + chr3.2:80236729-80236748 None:intergenic 25.0%
!!! GTATAATTATTGTTTTGCAG+TGG - chr3.2:80239037-80239056 MS.gene06417:CDS 25.0%
!!! TCATATCTCTATTTTTGAGA+AGG + chr3.2:80236730-80236749 None:intergenic 25.0%
!!! TTGGACAATTTTATTTGGTT+GGG + chr3.2:80237368-80237387 None:intergenic 25.0%
!!! TTGTTTTATTTGTGACAATG+AGG - chr3.2:80238143-80238162 MS.gene06417:intron 25.0%
AAAATCAACTTATAAGTCGG+AGG + chr3.2:80235840-80235859 None:intergenic 30.0%
AAATAAAATTGTCCAATCCG+AGG - chr3.2:80237372-80237391 MS.gene06417:intron 30.0%
AACCAAAAAACTAACATGGT+CGG + chr3.2:80236476-80236495 None:intergenic 30.0%
AATTCAAGTACAGGCAAATA+AGG + chr3.2:80239327-80239346 None:intergenic 30.0%
AGACTAATTAGGTTCCAAAA+TGG + chr3.2:80236382-80236401 None:intergenic 30.0%
ATAATACAACCAACTCAAAG+GGG - chr3.2:80237057-80237076 MS.gene06417:intron 30.0%
CAAAAATCAGACAAGGAAAA+AGG - chr3.2:80237193-80237212 MS.gene06417:intron 30.0%
CAAATAAGGATCAATATGGA+AGG + chr3.2:80239313-80239332 None:intergenic 30.0%
CAGTATATTATGCAGTACTT+CGG + chr3.2:80237742-80237761 None:intergenic 30.0%
GAAATGTTGGAGAATTATGA+TGG - chr3.2:80236186-80236205 MS.gene06417:intron 30.0%
GAAGAAGAATTCAAACAACT+TGG - chr3.2:80239258-80239277 MS.gene06417:CDS 30.0%
GACAAACCAAAAAACTAACA+TGG + chr3.2:80236480-80236499 None:intergenic 30.0%
GATAATACAACCAACTCAAA+GGG - chr3.2:80237056-80237075 MS.gene06417:intron 30.0%
GTCATAGAAACCAAGATTTA+AGG - chr3.2:80237116-80237135 MS.gene06417:intron 30.0%
TAAATCTTGGTTTCTATGAC+GGG + chr3.2:80237116-80237135 None:intergenic 30.0%
TATATAGGTATAACACACGT+CGG - chr3.2:80236569-80236588 MS.gene06417:intron 30.0%
TATTCGTTCACCTTAAATCT+TGG + chr3.2:80237129-80237148 None:intergenic 30.0%
TTCGATCACATCTAATAGTA+CGG + chr3.2:80235754-80235773 None:intergenic 30.0%
! AACTTTTGTGGCATGTATAT+AGG - chr3.2:80236554-80236573 MS.gene06417:intron 30.0%
! CAACTAAATCTAAAGCTACA+CGG - chr3.2:80237418-80237437 MS.gene06417:intron 30.0%
! CTTTTTCCTTGTCTGATTTT+TGG + chr3.2:80237195-80237214 None:intergenic 30.0%
! TCTTGTTCTTTTACTCTCAT+CGG + chr3.2:80239175-80239194 None:intergenic 30.0%
!! CATTTTGAGAACAGCATTAA+GGG + chr3.2:80235247-80235266 None:intergenic 30.0%
!! TAAAAGAACAAGAGCATTGT+TGG - chr3.2:80239182-80239201 MS.gene06417:CDS 30.0%
!! TCATTTTGAGAACAGCATTA+AGG + chr3.2:80235248-80235267 None:intergenic 30.0%
!! TCGGATTGGACAATTTTATT+TGG + chr3.2:80237373-80237392 None:intergenic 30.0%
!! TGGACAATTTTATTTGGTTG+GGG + chr3.2:80237367-80237386 None:intergenic 30.0%
!!! AAGTTTTAAACCAACCAGAA+AGG - chr3.2:80237034-80237053 MS.gene06417:intron 30.0%
!!! CTGGTTGGTTTAAAACTTTT+TGG + chr3.2:80237032-80237051 None:intergenic 30.0%
!!! TATCTCTATTTTTGAGAAGG+GGG + chr3.2:80236727-80236746 None:intergenic 30.0%
!!! TTAGTTTTTTGGTTTGTCCA+CGG - chr3.2:80236482-80236501 MS.gene06417:intron 30.0%
AAATTGGATAGACAGCTTTG+TGG - chr3.2:80238403-80238422 MS.gene06417:CDS 35.0%
AACTCAGAATATATCCGGAT+CGG - chr3.2:80237671-80237690 MS.gene06417:intron 35.0%
AATGTGTGCAAGTTCCAAAA+TGG + chr3.2:80235208-80235227 None:intergenic 35.0%
ACCCAAACTCAGAATATATC+CGG - chr3.2:80237666-80237685 MS.gene06417:intron 35.0%
ACGTGTTCAATACAATCAAG+TGG - chr3.2:80238647-80238666 MS.gene06417:intron 35.0%
AGCATATGCATATTGCACAA+AGG - chr3.2:80236101-80236120 MS.gene06417:intron 35.0%
ATCCGGATATATTCTGAGTT+TGG + chr3.2:80237671-80237690 None:intergenic 35.0%
CAGGCAAATAAGGATCAATA+TGG + chr3.2:80239317-80239336 None:intergenic 35.0%
CATCAGCCCATAATACAAAA+TGG - chr3.2:80236840-80236859 MS.gene06417:intron 35.0%
CTGAAAACTAGCTGACAATA+GGG - chr3.2:80238682-80238701 MS.gene06417:intron 35.0%
GACAGATGAAGAATTCAAGA+AGG - chr3.2:80239074-80239093 MS.gene06417:CDS 35.0%
GACTAATTACCTGGATATTG+AGG + chr3.2:80236342-80236361 None:intergenic 35.0%
GAGAATTATGATGGCTTCAA+AGG - chr3.2:80236195-80236214 MS.gene06417:intron 35.0%
GCATATGCATATTGCACAAA+GGG - chr3.2:80236102-80236121 MS.gene06417:intron 35.0%
GGATAATACAACCAACTCAA+AGG - chr3.2:80237055-80237074 MS.gene06417:intron 35.0%
GGGGAAATCATATCTTACTA+TGG + chr3.2:80236707-80236726 None:intergenic 35.0%
GTAATAGAAAACTCGTGTAG+TGG - chr3.2:80238115-80238134 MS.gene06417:intron 35.0%
GTTGGTTGTATTATCCTTTC+TGG + chr3.2:80237051-80237070 None:intergenic 35.0%
TACACGGTTTAATCTCAACA+AGG - chr3.2:80237434-80237453 MS.gene06417:intron 35.0%
TAGTATAAGTGGTGAGCAAA+CGG + chr3.2:80235386-80235405 None:intergenic 35.0%
TATTATGCAGTACTTCGGTT+TGG + chr3.2:80237737-80237756 None:intergenic 35.0%
TCCAGTCTCTAACTTGATTT+GGG + chr3.2:80237239-80237258 None:intergenic 35.0%
TCCGGATATATTCTGAGTTT+GGG + chr3.2:80237670-80237689 None:intergenic 35.0%
TTCCAGTCTCTAACTTGATT+TGG + chr3.2:80237240-80237259 None:intergenic 35.0%
TTGATGCCTTTGAGTATGTT+TGG + chr3.2:80236288-80236307 None:intergenic 35.0%
TTGATTTATCCCCTTTGAGT+TGG + chr3.2:80237069-80237088 None:intergenic 35.0%
! GTTGTATTATCCTTTCTGGT+TGG + chr3.2:80237047-80237066 None:intergenic 35.0%
! TTATTTAAACCTGATGGTGC+TGG + chr3.2:80235518-80235537 None:intergenic 35.0%
!! ATTTATCTAAGGTGTTGGAG+TGG + chr3.2:80236935-80236954 None:intergenic 35.0%
!! CGTGTAGCTTTAGATTTAGT+TGG + chr3.2:80237420-80237439 None:intergenic 35.0%
!! TGAAAGTACCTGAAGCTATA+TGG - chr3.2:80235265-80235284 MS.gene06417:CDS 35.0%
!! TTCAGACTTACTTGCTTTTG+TGG + chr3.2:80237516-80237535 None:intergenic 35.0%
!! TTGTTTTATGCTTCCATGTC+CGG - chr3.2:80236141-80236160 MS.gene06417:intron 35.0%
!! TTTATCTAAGGTGTTGGAGT+GGG + chr3.2:80236934-80236953 None:intergenic 35.0%
!!! ATCTCTATTTTTGAGAAGGG+GGG + chr3.2:80236726-80236745 None:intergenic 35.0%
!!! TTGTGGTGGTTTTTTTGTTG+TGG + chr3.2:80237499-80237518 None:intergenic 35.0%
!!! TTTTTGGGTCACTACCATTT+TGG - chr3.2:80236365-80236384 MS.gene06417:intron 35.0%
AAACAACTTGGCATTTCTGC+TGG - chr3.2:80239270-80239289 MS.gene06417:CDS 40.0%
AACAACATGGAAGCTTGTCA+TGG + chr3.2:80237556-80237575 None:intergenic 40.0%
AACAAGAGCTTTACCGACAT+CGG + chr3.2:80235457-80235476 None:intergenic 40.0%
AATCAGACAAGGAAAAAGGG+TGG - chr3.2:80237197-80237216 MS.gene06417:intron 40.0%
ACAACATGGAAGCTTGTCAT+GGG + chr3.2:80237555-80237574 None:intergenic 40.0%
ACGGTTTAATCTCAACAAGG+TGG - chr3.2:80237437-80237456 MS.gene06417:intron 40.0%
AGGTGCAGAAGAGATCATAT+CGG + chr3.2:80236322-80236341 None:intergenic 40.0%
CACGAACCAAAAATCAGACA+AGG - chr3.2:80237186-80237205 MS.gene06417:intron 40.0%
GACTATGGAGAGAATTTGAG+AGG + chr3.2:80235319-80235338 None:intergenic 40.0%
GCTGAAAACTAGCTGACAAT+AGG - chr3.2:80238681-80238700 MS.gene06417:intron 40.0%
GGATATATTCTGAGTTTGGG+TGG + chr3.2:80237667-80237686 None:intergenic 40.0%
GGTTGCTCATAAGTTAGCAA+AGG + chr3.2:80238711-80238730 None:intergenic 40.0%
TACAATCAAGTGGCTCAACT+AGG - chr3.2:80238657-80238676 MS.gene06417:intron 40.0%
TCCAACATTTCCCTCATGTA+GGG + chr3.2:80236177-80236196 None:intergenic 40.0%
TCCCAAATCAAGTTAGAGAC+TGG - chr3.2:80237235-80237254 MS.gene06417:intron 40.0%
TCTTCCACGATTCAACAACA+TGG + chr3.2:80237569-80237588 None:intergenic 40.0%
TGATGCACTTGAATCAGTTC+CGG - chr3.2:80236595-80236614 MS.gene06417:intron 40.0%
TGCTCATAAGTTAGCAAAGG+TGG + chr3.2:80238708-80238727 None:intergenic 40.0%
TGGGGATGCTATCTTCATTA+AGG - chr3.2:80236619-80236638 MS.gene06417:intron 40.0%
TTATGATGGCTTCAAAGGTG+TGG - chr3.2:80236200-80236219 MS.gene06417:intron 40.0%
! AGATTTAGTTGGCTTCCTGT+TGG + chr3.2:80237409-80237428 None:intergenic 40.0%
! AGCCTTGTAACAACTTTGCA+AGG + chr3.2:80239100-80239119 None:intergenic 40.0%
! GAGATTGATAGCTCAGACAT+GGG + chr3.2:80237706-80237725 None:intergenic 40.0%
! GCTTCTGTGTCATTATGACT+TGG + chr3.2:80237293-80237312 None:intergenic 40.0%
! TGAGATTGATAGCTCAGACA+TGG + chr3.2:80237707-80237726 None:intergenic 40.0%
! TGTTTTATGCTTCCATGTCC+GGG - chr3.2:80236142-80236161 MS.gene06417:intron 40.0%
! TTTGTTGTGGTTCGATCTCA+GGG + chr3.2:80237486-80237505 None:intergenic 40.0%
!! AAGAACAAGAGCATTGTTGG+CGG - chr3.2:80239185-80239204 MS.gene06417:CDS 40.0%
!! AGACTTACTTGCTTTTGTGG+TGG + chr3.2:80237513-80237532 None:intergenic 40.0%
!! TTTTGTTGTGGTTCGATCTC+AGG + chr3.2:80237487-80237506 None:intergenic 40.0%
!!! GACCGACCATGTTAGTTTTT+TGG - chr3.2:80236471-80236490 MS.gene06417:intron 40.0%
AACTGTTACTGTTGTTCGCG+TGG + chr3.2:80237613-80237632 None:intergenic 45.0%
ACAGGTCAGACCATCATCAT+CGG + chr3.2:80235481-80235500 None:intergenic 45.0%
ACTTGAGCAGCAATGGTGAA+AGG - chr3.2:80235418-80235437 MS.gene06417:CDS 45.0%
AGAACAGCATTAAGGGACGT+AGG + chr3.2:80235240-80235259 None:intergenic 45.0%
AGAATTTGAGAGGCAGAGAG+TGG + chr3.2:80235309-80235328 None:intergenic 45.0%
AGTTAGAGACTGGAACGAGT+TGG - chr3.2:80237245-80237264 MS.gene06417:intron 45.0%
ATAGGTATAACACACGTCGG+TGG - chr3.2:80236572-80236591 MS.gene06417:intron 45.0%
CAGGGTGGCTTATGTATTCA+TGG + chr3.2:80237468-80237487 None:intergenic 45.0%
CTCCAACATTTCCCTCATGT+AGG + chr3.2:80236178-80236197 None:intergenic 45.0%
CTGGACGAAAAATGATGCAC+AGG + chr3.2:80235499-80235518 None:intergenic 45.0%
GATGTCATTGCCCTACATGA+GGG - chr3.2:80236164-80236183 MS.gene06417:intron 45.0%
GCTTCCATGTTGTTGAATCG+TGG - chr3.2:80237562-80237581 MS.gene06417:intron 45.0%
GGCCTTGCAAAGTTGTTACA+AGG - chr3.2:80239095-80239114 MS.gene06417:CDS 45.0%
GGTGCAGAAGAGATCATATC+GGG + chr3.2:80236321-80236340 None:intergenic 45.0%
GGTGGCTTATGTATTCATGG+TGG + chr3.2:80237465-80237484 None:intergenic 45.0%
GTACCTGAAGCTATATGGCA+AGG - chr3.2:80235270-80235289 MS.gene06417:CDS 45.0%
GTTAGAGACTGGAACGAGTT+GGG - chr3.2:80237246-80237265 MS.gene06417:intron 45.0%
TAAAGCCTCAAAGTGAAGCG+AGG - chr3.2:80235178-80235197 MS.gene06417:CDS 45.0%
TATAAGTGGTGAGCAAACGG+AGG + chr3.2:80235383-80235402 None:intergenic 45.0%
TCTTCTGCACCTCAATATCC+AGG - chr3.2:80236330-80236349 MS.gene06417:intron 45.0%
TGCACGAAGACAAGCAAATG+AGG + chr3.2:80238732-80238751 None:intergenic 45.0%
TGCAGTGGACAGTGTTAACA+TGG - chr3.2:80239052-80239071 MS.gene06417:CDS 45.0%
TTAGAGACTGGAACGAGTTG+GGG - chr3.2:80237247-80237266 MS.gene06417:intron 45.0%
TTCTGCAACACACACAACGA+CGG - chr3.2:80237631-80237650 MS.gene06417:intron 45.0%
TTGTTACAAGGCTCTTCCAG+TGG - chr3.2:80239107-80239126 MS.gene06417:CDS 45.0%
! ACTGTTGTTCGCGTGGTTTT+GGG + chr3.2:80237606-80237625 None:intergenic 45.0%
! AGAATCAATTTTCCGGCCAC+TGG + chr3.2:80239126-80239145 None:intergenic 45.0%
! AGTTGGCTTCCTGTTGGATT+TGG + chr3.2:80237403-80237422 None:intergenic 45.0%
! ATTTTTCGTCCAGCACCATC+AGG - chr3.2:80235506-80235525 MS.gene06417:intron 45.0%
! GAGACTCTAGTTGATGTTGG+TGG - chr3.2:80236222-80236241 MS.gene06417:intron 45.0%
! GCTTCCTGTTGGATTTGGTT+TGG + chr3.2:80237398-80237417 None:intergenic 45.0%
! GTGGAGACTCTAGTTGATGT+TGG - chr3.2:80236219-80236238 MS.gene06417:intron 45.0%
! TACTGTTGTTCGCGTGGTTT+TGG + chr3.2:80237607-80237626 None:intergenic 45.0%
! TGGGGTTGATCACAACTAGT+TGG + chr3.2:80237349-80237368 None:intergenic 45.0%
!! GTTGATGTTGGTGGCAATTC+TGG - chr3.2:80236231-80236250 MS.gene06417:intron 45.0%
!! TGTTGGATTTGGTTTGGCCT+CGG + chr3.2:80237392-80237411 None:intergenic 45.0%
!!! TGATTTTTGGTTCGTGCTGC+AGG + chr3.2:80237182-80237201 None:intergenic 45.0%
!! AAATACAAAAAAAAAAAAAT+TGG - chr3.2:80238387-80238406 MS.gene06417:CDS 5.0%
!! AATTAAAAAAAAAATACAAA+AGG - chr3.2:80236958-80236977 MS.gene06417:intron 5.0%
!!! TTTTAATTTTAATTTATCTA+AGG + chr3.2:80236946-80236965 None:intergenic 5.0%
AAGTACTCCCTCACCGATGT+CGG - chr3.2:80235441-80235460 MS.gene06417:intron 50.0%
ACTTGAATCAGTTCCGGCTG+GGG - chr3.2:80236601-80236620 MS.gene06417:intron 50.0%
AGCTTTACCGACATCGGTGA+GGG + chr3.2:80235451-80235470 None:intergenic 50.0%
ATAGCTCAGACATGGGTTCG+TGG + chr3.2:80237699-80237718 None:intergenic 50.0%
ATGAAGATAGCATCCCCAGC+CGG + chr3.2:80236617-80236636 None:intergenic 50.0%
CACTTGAATCAGTTCCGGCT+GGG - chr3.2:80236600-80236619 MS.gene06417:intron 50.0%
CAGGTCAGACCATCATCATC+GGG + chr3.2:80235480-80235499 None:intergenic 50.0%
CATGTAGGGCAATGACATCC+CGG + chr3.2:80236163-80236182 None:intergenic 50.0%
CATTGTTGGCGGCTGACATA+TGG - chr3.2:80239196-80239215 MS.gene06417:CDS 50.0%
CCACCTTGCCATATAGCTTC+AGG + chr3.2:80235276-80235295 None:intergenic 50.0%
CCTGAAGCTATATGGCAAGG+TGG - chr3.2:80235273-80235292 MS.gene06417:CDS 50.0%
CGTGGAAGACATTGAAGCCA+TGG - chr3.2:80237580-80237599 MS.gene06417:intron 50.0%
GAGGCCAAACCAAATCCAAC+AGG - chr3.2:80237391-80237410 MS.gene06417:intron 50.0%
GCCCTACATGAGGGAAATGT+TGG - chr3.2:80236173-80236192 MS.gene06417:intron 50.0%
GCTCTTGTTCCCGATGATGA+TGG - chr3.2:80235468-80235487 MS.gene06417:intron 50.0%
GGAGAATGGGAAAGTTGCTG+TGG - chr3.2:80235155-80235174 MS.gene06417:CDS 50.0%
GGATGTCATTGCCCTACATG+AGG - chr3.2:80236163-80236182 MS.gene06417:intron 50.0%
GTTGAGGACTTGAGCAGCAA+TGG - chr3.2:80235411-80235430 MS.gene06417:CDS 50.0%
TGAGCAAACGGAGGATACGT+TGG + chr3.2:80235374-80235393 None:intergenic 50.0%
TTACTCTCATCGGTCTGCTC+CGG + chr3.2:80239165-80239184 None:intergenic 50.0%
TTCTCGAACGGTTCCACAGT+TGG + chr3.2:80236066-80236085 None:intergenic 50.0%
! GTCATGGGTCTCGTTTGTTG+TGG + chr3.2:80237540-80237559 None:intergenic 50.0%
! GTTCGTGCTGCAGGTTTGTT+GGG + chr3.2:80237173-80237192 None:intergenic 50.0%
!! GATTTGGTTTGGCCTCGGAT+TGG + chr3.2:80237387-80237406 None:intergenic 50.0%
!! TGAAGCGAGGCTTGCCATTT+TGG - chr3.2:80235191-80235210 MS.gene06417:CDS 50.0%
!! TGCTGCAGGTTTGTTGGGTT+GGG + chr3.2:80237168-80237187 None:intergenic 50.0%
CTCTCCATAGTCCGTCCCAA+TGG - chr3.2:80235327-80235346 MS.gene06417:CDS 55.0%
GAACCGTTCGAGAAGCTGCA+CGG - chr3.2:80236072-80236091 MS.gene06417:intron 55.0%
GAGCTTTACCGACATCGGTG+AGG + chr3.2:80235452-80235471 None:intergenic 55.0%
GCAAGCCTCGCTTCACTTTG+AGG + chr3.2:80235186-80235205 None:intergenic 55.0%
GCACTTGAATCAGTTCCGGC+TGG - chr3.2:80236599-80236618 MS.gene06417:intron 55.0%
GGTTCGTGCTGCAGGTTTGT+TGG + chr3.2:80237174-80237193 None:intergenic 55.0%
GTTGTGGTTCGATCTCAGGG+TGG + chr3.2:80237483-80237502 None:intergenic 55.0%
TACAAGGCTCTTCCAGTGGC+CGG - chr3.2:80239111-80239130 MS.gene06417:CDS 55.0%
TCCATAGTCCGTCCCAATGG+CGG - chr3.2:80235330-80235349 MS.gene06417:CDS 55.0%
TCTCCGTGCAGCTTCTCGAA+CGG + chr3.2:80236078-80236097 None:intergenic 55.0%
! GGTTGGGTTGTGCTTGTGGT+GGG + chr3.2:80237152-80237171 None:intergenic 55.0%
!! GTGCTGCAGGTTTGTTGGGT+TGG + chr3.2:80237169-80237188 None:intergenic 55.0%
!! GTTGGGTTGGGTTGTGCTTG+TGG + chr3.2:80237156-80237175 None:intergenic 55.0%
AACGGCCATGCTCGCAGGTA+CGG + chr3.2:80236021-80236040 None:intergenic 60.0%
ATAGTCCGTCCCAATGGCGG+AGG - chr3.2:80235333-80235352 MS.gene06417:CDS 60.0%
CGCAGTGGAGGATCCAACTG+TGG - chr3.2:80236050-80236069 MS.gene06417:intron 60.0%
GGGCAATGACATCCCGGACA+TGG + chr3.2:80236157-80236176 None:intergenic 60.0%
TCAGCGTCTCCTCCGCCATT+GGG + chr3.2:80235345-80235364 None:intergenic 60.0%
TCCACTGCGTCTCCCACCAA+CGG + chr3.2:80236039-80236058 None:intergenic 60.0%
TTCAGCGTCTCCTCCGCCAT+TGG + chr3.2:80235346-80235365 None:intergenic 60.0%
! GGGTTGGGTTGTGCTTGTGG+TGG + chr3.2:80237153-80237172 None:intergenic 60.0%
!! ATGGGTTCGTGGCACCGATC+CGG + chr3.2:80237688-80237707 None:intergenic 60.0%
!! TCCGCCATTGGGACGGACTA+TGG + chr3.2:80235334-80235353 None:intergenic 60.0%
!!! GTTCGCGTGGTTTTGGGCCA+TGG + chr3.2:80237600-80237619 None:intergenic 60.0%
ACGGCCATGCTCGCAGGTAC+GGG + chr3.2:80236020-80236039 None:intergenic 65.0%
AGGACCCGTACCTGCGAGCA+TGG - chr3.2:80236013-80236032 MS.gene06417:intron 65.0%
CGTCTCCTCCGCCATTGGGA+CGG + chr3.2:80235341-80235360 None:intergenic 65.0%
CTGCGAGCATGGCCGTTGGT+GGG - chr3.2:80236024-80236043 MS.gene06417:intron 65.0%
GTACCTGCGAGCATGGCCGT+TGG - chr3.2:80236020-80236039 MS.gene06417:intron 65.0%
TCGGTCTGCTCCGGCAACAC+CGG + chr3.2:80239156-80239175 None:intergenic 65.0%
! GTTGGTGGGAGACGCAGTGG+AGG - chr3.2:80236038-80236057 MS.gene06417:intron 65.0%
CCACCAACGGCCATGCTCGC+AGG + chr3.2:80236026-80236045 None:intergenic 70.0%
CCTGCGAGCATGGCCGTTGG+TGG - chr3.2:80236023-80236042 MS.gene06417:intron 70.0%
! GCCGTTGGTGGGAGACGCAG+TGG - chr3.2:80236035-80236054 MS.gene06417:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 80235153 80239356 80235153 ID=MS.gene06417
chr3.2 mRNA 80235153 80239356 80235153 ID=MS.gene06417.t1;Parent=MS.gene06417
chr3.2 exon 80238982 80239356 80238982 ID=MS.gene06417.t1.exon1;Parent=MS.gene06417.t1
chr3.2 CDS 80238982 80239356 80238982 ID=cds.MS.gene06417.t1;Parent=MS.gene06417.t1
chr3.2 exon 80238158 80238494 80238158 ID=MS.gene06417.t1.exon2;Parent=MS.gene06417.t1
chr3.2 CDS 80238158 80238494 80238158 ID=cds.MS.gene06417.t1;Parent=MS.gene06417.t1
chr3.2 exon 80237869 80237933 80237869 ID=MS.gene06417.t1.exon3;Parent=MS.gene06417.t1
chr3.2 CDS 80237869 80237933 80237869 ID=cds.MS.gene06417.t1;Parent=MS.gene06417.t1
chr3.2 exon 80235153 80235452 80235153 ID=MS.gene06417.t1.exon4;Parent=MS.gene06417.t1
chr3.2 CDS 80235153 80235452 80235153 ID=cds.MS.gene06417.t1;Parent=MS.gene06417.t1
Gene Sequence

>MS.gene06417

ATGGAGAATGGGAAAGTTGCTGTGGTAAAGCCTCAAAGTGAAGCGAGGCTTGCCATTTTGGAACTTGCACACATTATGAGTGTTCCTACGTCCCTTAATGCTGTTCTCAAAATGAAAGTACCTGAAGCTATATGGCAAGGTGGAAAGAACACTCCACTCTCTGCCTCTCAAATTCTCTCCATAGTCCGTCCCAATGGCGGAGGAGACGCTGAAAATCTCCAACGTATCCTCCGTTTGCTCACCACTTATACTATTTTTGTTGAGGACTTGAGCAGCAATGGTGAAAGGAAGTACTCCCTCACCGATGTCGGTAAAGCTCTTGTTCCCGATGATGATGGTCTGACCTGTGCATCATTTTTCGTCCAGCACCATCAGGTTTAAATAAACTTATATACAAATGTTTTTTCTTTTTTATGTTTCTTAAATATAAAATATATAACAAAATGAAATTAAAATATACGACTTTTTCAACAACAGAAAAAGAAGAAAAAAAAGATTAATGGAGATATTCCAACAAATACACAGTTATTATAATTATTATTGGGTTAAATACTAAGAGTACTTAATTTTGTGGAAATGAATATGGTATAAAACTCAACCGTACTATTAGATGTGATCGAAGACATACTAAAAAGAAACACGAGTCTGACATAAAAACTTAAAATATTTAATTTATAAAGAAGACCTCCGACTTATAAGTTGATTTTGTAAAGATAAATTATGTTCTTATCAAAACATGATAGCTATGCCCATATATTATAACAAGTTCGTGCAAAACTTACAAGTTGATTTTTGTATAAACTCATGCAAAACTTTGTTGAGAAAGTACATCTAATAATCTCAAAAAAAATCAAACGTACAGGACCCGTACCTGCGAGCATGGCCGTTGGTGGGAGACGCAGTGGAGGATCCAACTGTGGAACCGTTCGAGAAGCTGCACGGAGAAGCAGCATATGCATATTGCACAAAGGGACCAGAAGAAATGAGTTTGTTTTATGCTTCCATGTCCGGGATGTCATTGCCCTACATGAGGGAAATGTTGGAGAATTATGATGGCTTCAAAGGTGTGGAGACTCTAGTTGATGTTGGTGGCAATTCTGGTGTGAGTCTCAACATGATTATGAACAAATATCCAAACATACTCAAAGGCATCAATTTTGATCTTCCCGATATGATCTCTTCTGCACCTCAATATCCAGGTAATTAGTCTATTTTTTGGGTCACTACCATTTTGGAACCTAATTAGTCTAATTTAAAAAAATAAAGTTAGATTGACAAATATTAGAGGACCGACCATCCTTAAAAAAATATATTAGTGGACCGACCATGTTAGTTTTTTGGTTTGTCCACGGACTAATTTTATTAAATTCGAGATAACGAACAAATTTATTCAAATTATTTAACTTTTGTGGCATGTATATAGGTATAACACACGTCGGTGGTGATGCACTTGAATCAGTTCCGGCTGGGGATGCTATCTTCATTAAGGTGTCTCTTTCACTGCATTAGTATTTTACCTACTTATCTCCAAAATATTTTTCAACTTTAGCACCATAGTAAGATATGATTTCCCCCCTTCTCAAAAATAGAGATATGATTTTCCACTATCTACTTACTTTTTTATAACCAAAATTTTATTATTAGGAGTAAACTAAACATAGTTGCCAATAACTAATGTTCAAACATACATCAGCCCATAATACAAAATGGTTGCTAAGATACTATTGTTACTTACTTTTTTGTTTTTTTGGGTAAATAAATATGATGCAGATGATAAACCCACTCCAACACCTTAGATAAATTAAAATTAAAAAAAAAATACAAAAGGTCAGGGACATAAATGAAATCTGACTCAATGAAAAGTAAAAAAATGACACCAAAAAGTTTTAAACCAACCAGAAAGGATAATACAACCAACTCAAAGGGGATAAATCAAACAATCAGACAAAGCAAAAAGTTGCCCGTCATAGAAACCAAGATTTAAGGTGAACGAATACCCACCACAAGCACAACCCAACCCAACAAACCTGCAGCACGAACCAAAAATCAGACAAGGAAAAAGGGTGGTATGTTAACTCGTATTCCCAAATCAAGTTAGAGACTGGAACGAGTTGGGGCTCAAACTAGTTACAACAAACCAAGTCATAATGACACAGAAGCAACAACAACTAAGATCGAATTCACTGTTACAAACCAACTAGTTGTGATCAACCCCAACCAAATAAAATTGTCCAATCCGAGGCCAAACCAAATCCAACAGGAAGCCAACTAAATCTAAAGCTACACGGTTTAATCTCAACAAGGTGGAACCACCATGAATACATAAGCCACCCTGAGATCGAACCACAACAAAAAAACCACCACAAAAGCAAGTAAGTCTGAATCCACAACAAACGAGACCCATGACAAGCTTCCATGTTGTTGAATCGTGGAAGACATTGAAGCCATGGCCCAAAACCACGCGAACAACAGTAACAGTTCTGCAACACACACAACGACGGCAAGAAACAACCACCCAAACTCAGAATATATCCGGATCGGTGCCACGAACCCATGTCTGAGCTATCAATCTCATATCGAACCAAACCGAAGTACTGCATAATATACTGCATATTTTTTAACGTTAGACTATTATAACAATAAGGGGAGTGTTATTTGAACAACCAAATGAGACAACTTAACTTATGATAACTTTTTTTTCTCTCTTTTCATTGGTCAAAAACAATGGAGTGCGAAAAAGAAAGAGAGAGAATAAGAGTATAATGTGAGTATGAGAAAGAAAGTTGTCAAAAAAATTGTTAGAAAGTGATTGTACAAATATCATTTCTCTAGCAATAACTACGCATTTTACATTTTTCTTTAGACGAGATTTAAACTATGACACGTCGTCTATATGTATTTTATACTTCTACACTACTTATAAGTCAATTAATCATGATTCGTTTGTTATAAGTATGTCTTTGTAATAGAAAACTCGTGTAGTGGTACAATTGTTTTATTTGTGACAATGAGGTTGCTCTTCTTAAAAAAAAAATAAGTATGTCTTTGTAAGCTTAACAATTTAATTACTTTTTAAAATTAAAATTTACATCATAATTTAAGGGGAAAAAAACTAAATAGAAATTTCAGTCATTCTTTTTTAAATTAATTTTTCTTGAGTAGTATAGATAAAAAAAATTAAATGAAAAATTTAAACTCGTTAATAAAATTGAAACAGATAAATTAAAATAATTCAAATACAAAAAAAAAAAAATTGGATAGACAGCTTTGTGGCGTGTTTCCGCTAGTTTCTTATAAAAAATACATATTTACCAAATAAGTGAAAAGAAAGATCATCATTCGATTTGATGCTCAACTCTTTTAATCGAGTGAAATTGAGTTTCTGCCAAAAAAACAAGATCATCATTAAAAACACTAATTAATTAATGCATATTTTACAGTACATCATTTTCTTTTTTTAAAAGAAGAGATCTTATATCATTTCACTAGTCAAAACGTGTTCAATACAATCAAGTGGCTCAACTAGGAGCTGAAAACTAGCTGACAATAGGGCCACCTTTGCTAACTTATGAGCAACCTCATTTGCTTGTCTTCGTGCAAACTCAACACTAGAGTTTTCATAGTACTCACTAAATTCGGATTTACATTCATTAATAATAGCACCATATTCCTTATAATCTTGCTTATTTTACAGTACATCATATCATTTGATACTTGTAACCAAAAATATCATTTGATACTTTAGATTTTCTTTAAGGAGATACTTTAGATATTTAAAACTCTTTAATTATAACTTTTTAATTCTATCAATTATAATTTTGTCGAAAAAAAAATCTATCAATTATAATTAATAGTTTTTTTTAGAGAATCAATTATGATTAATAGTATAATTATTGTTTTGCAGTGGACAGTGTTAACATGGACAGATGAAGAATTCAAGAAGGCCTTGCAAAGTTGTTACAAGGCTCTTCCAGTGGCCGGAAAATTGATTCTTTGTGAACCGGTGTTGCCGGAGCAGACCGATGAGAGTAAAAGAACAAGAGCATTGTTGGCGGCTGACATATGGATAATGACAATGTATAGAACTAAGGGAAAACACAGAACCGAAGAAGAATTCAAACAACTTGGCATTTCTGCTGGTTTTAAAAGTTTTCGTGCCTTCCATATTGATCCTTATTTGCCTGTACTTGAATTTCATAAATGA
Protein sequence

>MS.gene06417.t1

MENGKVAVVKPQSEARLAILELAHIMSVPTSLNAVLKMKVPEAIWQGGKNTPLSASQILSIVRPNGGGDAENLQRILRLLTTYTIFVEDLSSNGERKYSLTDVGKALVPDDDGLTCASFFVQHHQDPYLRAWPLVGDAVEDPTVEPFEKLHGEAAYAYCTKGPEEMSLFYASMSGMSLPYMREMLENYDGFKGVETLVDVGGNSGVSLNMIMNKYPNILKGINFDLPDMISSAPQYPGITHVGGDALESVPAGDAIFIKWTVLTWTDEEFKKALQSCYKALPVAGKLILCEPVLPEQTDESKRTRALLAADIWIMTMYRTKGKHRTEEEFKQLGISAGFKSFRAFHIDPYLPVLEFHK