Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055128.t1 | XP_013449031.1 | 94 | 839 | 49 | 1 | 1 | 839 | 1 | 838 | 0.00E+00 | 1486.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055128.t1 | A0A072U1M6 | 94.0 | 839 | 49 | 1 | 1 | 839 | 1 | 838 | 0.0e+00 | 1486.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055128 | MS.gene07138 | 0.803462 | 3.45E-49 | -1.69E-46 |
| MS.gene055128 | MS.gene071428 | 0.801895 | 7.26E-49 | -1.69E-46 |
| MS.gene055128 | MS.gene29884 | 0.817717 | 2.85E-52 | -1.69E-46 |
| MS.gene055128 | MS.gene94795 | 0.844846 | 5.87E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055128.t1 | MTR_7g065880 | 93.683 | 839 | 52 | 1 | 1 | 839 | 1 | 838 | 0.0 | 1575 |
| MS.gene055128.t1 | MTR_7g065880 | 93.430 | 761 | 49 | 1 | 1 | 761 | 1 | 760 | 0.0 | 1423 |
| MS.gene055128.t1 | MTR_4g019900 | 47.206 | 877 | 361 | 27 | 42 | 839 | 74 | 927 | 0.0 | 577 |
| MS.gene055128.t1 | MTR_2g097850 | 33.828 | 337 | 178 | 9 | 525 | 839 | 602 | 915 | 6.35e-50 | 190 |
| MS.gene055128.t1 | MTR_4g064997 | 34.890 | 364 | 190 | 12 | 509 | 839 | 527 | 876 | 1.14e-49 | 189 |
| MS.gene055128.t1 | MTR_1g073360 | 36.800 | 125 | 66 | 4 | 689 | 802 | 436 | 558 | 1.47e-16 | 84.3 |
| MS.gene055128.t1 | MTR_1g073360 | 36.800 | 125 | 66 | 4 | 689 | 802 | 471 | 593 | 1.60e-16 | 84.3 |
| MS.gene055128.t1 | MTR_5g010160 | 29.966 | 297 | 167 | 12 | 531 | 802 | 272 | 552 | 6.13e-15 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055128.t1 | AT5G01030 | 37.037 | 432 | 210 | 12 | 421 | 839 | 362 | 744 | 2.71e-64 | 230 |
| MS.gene055128.t1 | AT5G01030 | 37.037 | 432 | 210 | 12 | 421 | 839 | 362 | 744 | 2.71e-64 | 230 |
| MS.gene055128.t1 | AT5G01030 | 37.037 | 432 | 210 | 12 | 421 | 839 | 362 | 744 | 2.71e-64 | 230 |
| MS.gene055128.t1 | AT2G29510 | 29.709 | 515 | 296 | 12 | 361 | 839 | 355 | 839 | 1.48e-47 | 182 |
| MS.gene055128.t1 | AT5G59020 | 29.574 | 470 | 255 | 16 | 421 | 839 | 336 | 780 | 2.01e-47 | 181 |
| MS.gene055128.t1 | AT2G37930 | 32.161 | 398 | 189 | 14 | 451 | 839 | 246 | 571 | 6.07e-42 | 162 |
| MS.gene055128.t1 | AT2G37930 | 32.161 | 398 | 189 | 14 | 451 | 839 | 246 | 571 | 6.07e-42 | 162 |
| MS.gene055128.t1 | AT2G37930 | 32.161 | 398 | 189 | 14 | 451 | 839 | 218 | 543 | 7.87e-42 | 161 |
| MS.gene055128.t1 | AT2G37930 | 32.484 | 314 | 141 | 11 | 451 | 761 | 246 | 491 | 1.91e-32 | 132 |
| MS.gene055128.t1 | AT1G04490 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.52e-19 | 91.7 |
| MS.gene055128.t1 | AT1G04490 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.52e-19 | 91.7 |
| MS.gene055128.t1 | AT1G04490 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.52e-19 | 91.7 |
| MS.gene055128.t1 | AT1G04490 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.52e-19 | 91.7 |
| MS.gene055128.t1 | AT1G04490 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.52e-19 | 91.7 |
| MS.gene055128.t1 | AT1G04490 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.52e-19 | 91.7 |
| MS.gene055128.t1 | AT1G04490 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.52e-19 | 91.7 |
| MS.gene055128.t1 | AT1G04490 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.52e-19 | 91.7 |
| MS.gene055128.t1 | AT1G63520 | 32.704 | 159 | 86 | 5 | 698 | 839 | 374 | 528 | 6.31e-19 | 91.7 |
| MS.gene055128.t1 | AT2G33360 | 39.474 | 114 | 64 | 3 | 696 | 805 | 321 | 433 | 1.24e-17 | 87.0 |
| MS.gene055128.t1 | AT2G33360 | 39.474 | 114 | 64 | 3 | 696 | 805 | 476 | 588 | 1.90e-17 | 87.4 |
| MS.gene055128.t1 | AT1G04490 | 43.836 | 73 | 34 | 3 | 690 | 761 | 282 | 348 | 2.46e-11 | 66.6 |
| MS.gene055128.t1 | AT4G11450 | 36.571 | 175 | 76 | 7 | 653 | 802 | 459 | 623 | 5.61e-11 | 66.6 |
Find 123 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCGAAAGCTCGTTGAATT+TGG | 0.167331 | 7.4:+39053713 | None:intergenic |
| TAACTTGGTTTCATTGCTTC+TGG | 0.235662 | 7.4:+39054522 | None:intergenic |
| CATATGACCAGCAATATTAT+AGG | 0.235960 | 7.4:+39053454 | None:intergenic |
| GTGAAAGATTATGTCCTATT+TGG | 0.240721 | 7.4:-39053371 | MS.gene055128:CDS |
| CAAGAGAAGGCTTTAAATTT+CGG | 0.250149 | 7.4:-39054982 | MS.gene055128:CDS |
| AGACACAGCCTTATTCAATT+TGG | 0.253495 | 7.4:-39052823 | MS.gene055128:CDS |
| TTGATTCATCGATGGAAATT+AGG | 0.256495 | 7.4:-39053101 | MS.gene055128:CDS |
| CCACAAGAAAATGATATTTC+TGG | 0.274527 | 7.4:-39053191 | MS.gene055128:CDS |
| AACGAGCTTTCGAACAAATA+AGG | 0.281272 | 7.4:-39053705 | MS.gene055128:CDS |
| GTTAAACAATGTCGAAATTC+TGG | 0.285725 | 7.4:-39054799 | MS.gene055128:CDS |
| TGAGGTTATTAGATCCTATA+TGG | 0.299017 | 7.4:-39053799 | MS.gene055128:CDS |
| CAATGGCTCCAAATTGAATA+AGG | 0.307531 | 7.4:+39052815 | None:intergenic |
| ACTGGCATGGAGCTTTGTTT+TGG | 0.319741 | 7.4:+39053929 | None:intergenic |
| TATCTCAAACGTTCTGATAA+AGG | 0.322490 | 7.4:-39055018 | MS.gene055128:CDS |
| CAATTCTAGCAAAGATAATA+AGG | 0.335895 | 7.4:-39053858 | MS.gene055128:CDS |
| TTCGAAAGCTCGTTGAATTT+GGG | 0.342345 | 7.4:+39053714 | None:intergenic |
| TAAATTTCGGTGTTCTTGAT+TGG | 0.342716 | 7.4:-39054969 | MS.gene055128:CDS |
| AATTCTTGCGGTTGTTGATC+CGG | 0.361333 | 7.4:+39053332 | None:intergenic |
| TCTCCTAATGTATCAATTTG+TGG | 0.364459 | 7.4:+39055123 | None:intergenic |
| CTTCATTGCTATCGAACAAT+TGG | 0.364653 | 7.4:+39054917 | None:intergenic |
| GATCAACTCCAACGCCAAAT+AGG | 0.368836 | 7.4:+39053357 | None:intergenic |
| AGGTAGAAGTTTAAGTTTCA+AGG | 0.381821 | 7.4:-39053966 | MS.gene055128:CDS |
| TATCGGTGTCAAACTGCTTT+CGG | 0.381907 | 7.4:+39053742 | None:intergenic |
| TCTGGAACTCACTTTCTTCT+CGG | 0.390789 | 7.4:+39054540 | None:intergenic |
| CGAAATTTAAAGCCTTCTCT+TGG | 0.396747 | 7.4:+39054983 | None:intergenic |
| AAACCACAAATTGATACATT+AGG | 0.401357 | 7.4:-39055126 | MS.gene055128:CDS |
| GATAAAGCAAATCAGAAAAT+CGG | 0.403253 | 7.4:-39055219 | MS.gene055128:CDS |
| TAGAGATACTTTCATTGAAA+AGG | 0.403936 | 7.4:-39054104 | MS.gene055128:CDS |
| GACTGTGGAGGTTGGGATGT+TGG | 0.405281 | 7.4:-39053068 | MS.gene055128:CDS |
| CTAAGAAATCAATGTTCTAC+TGG | 0.414611 | 7.4:-39054064 | MS.gene055128:CDS |
| ATATTTATTTGCTATCTCCT+TGG | 0.418849 | 7.4:+39052665 | None:intergenic |
| CTGAGGTCTCAAGTCTATAT+CGG | 0.418992 | 7.4:+39055245 | None:intergenic |
| AAAGAGAGAAGTCTTAATTC+CGG | 0.424140 | 7.4:-39054619 | MS.gene055128:CDS |
| TGTGATCAACAGTGAAAGAA+AGG | 0.424770 | 7.4:-39053621 | MS.gene055128:CDS |
| TGAAAGTATCTCTATTAGAT+TGG | 0.425685 | 7.4:+39054113 | None:intergenic |
| CCACTGATCCATCCTTAACT+TGG | 0.426124 | 7.4:+39054507 | None:intergenic |
| AGCATTACAGTTATACTTCC+AGG | 0.429390 | 7.4:-39053164 | MS.gene055128:CDS |
| GATGCTTTATTCTTCCATAT+AGG | 0.432118 | 7.4:+39053785 | None:intergenic |
| TTACTCATATCCAAGGTGTT+TGG | 0.434001 | 7.4:+39052699 | None:intergenic |
| CCGTTAGAACGAAAAGATAA+AGG | 0.436569 | 7.4:-39054577 | MS.gene055128:CDS |
| GGATATGCCTATAATATTGC+TGG | 0.440636 | 7.4:-39053461 | MS.gene055128:CDS |
| AGCTTAGCTTCGGCTTGAAT+CGG | 0.448701 | 7.4:-39053991 | MS.gene055128:CDS |
| GTACTTTAAACTCTATCAAC+AGG | 0.451412 | 7.4:+39052618 | None:intergenic |
| CATCATCTTCAACAGCTAGA+AGG | 0.453562 | 7.4:-39054867 | MS.gene055128:CDS |
| GACATCTTATTCGAGCGATC+AGG | 0.456004 | 7.4:+39054142 | None:intergenic |
| TCTGAAAATCAGCTTAGCTT+CGG | 0.462662 | 7.4:-39054001 | MS.gene055128:CDS |
| GAGAGCACAGAATGAAATCA+AGG | 0.464392 | 7.4:-39054759 | MS.gene055128:CDS |
| GCTTCGCCGGAGAAGGATGA+TGG | 0.465656 | 7.4:-39053572 | MS.gene055128:CDS |
| CGAAGCAAAACAATGTCTCT+TGG | 0.472535 | 7.4:+39054439 | None:intergenic |
| GAGTAGAATCCTTCCTTCAA+TGG | 0.473209 | 7.4:+39052798 | None:intergenic |
| GAAGCAATGAAACCAAGTTA+AGG | 0.473362 | 7.4:-39054519 | MS.gene055128:CDS |
| GAACTTCAAGGGACAGTGTA+TGG | 0.473366 | 7.4:-39053393 | MS.gene055128:CDS |
| ATCAAAGGACAAGAACTTCA+AGG | 0.484905 | 7.4:-39053405 | MS.gene055128:CDS |
| TGATTTGCTTTATCTTTCTG+AGG | 0.485518 | 7.4:+39055228 | None:intergenic |
| AGCAAAGATAATAAGGTGAA+TGG | 0.486197 | 7.4:-39053851 | MS.gene055128:CDS |
| GAAGAAGATTCAAATATCAA+TGG | 0.493349 | 7.4:+39053890 | None:intergenic |
| AATATGTGACTGTGGAGGTT+GGG | 0.499358 | 7.4:-39053075 | MS.gene055128:CDS |
| TGATGTTAACTTGCTGAAGA+AGG | 0.499777 | 7.4:-39053258 | MS.gene055128:CDS |
| TAGTTTAGCTTCGCCGGAGA+AGG | 0.500667 | 7.4:-39053579 | MS.gene055128:CDS |
| CAAAGGCAGTTATGCAGTCT+AGG | 0.501241 | 7.4:-39055194 | MS.gene055128:CDS |
| AAGCACATGTCTAATTTGCC+AGG | 0.504603 | 7.4:-39055042 | MS.gene055128:CDS |
| CGATGAAGCTATAAGCATGC+AGG | 0.504951 | 7.4:-39054668 | MS.gene055128:CDS |
| GTTGAATTTGGGCTACCTAT+CGG | 0.506386 | 7.4:+39053725 | None:intergenic |
| TCAAACTGCTTTCGGATGAA+TGG | 0.508231 | 7.4:+39053750 | None:intergenic |
| GAAGCAAGATCGGTCGCAGA+AGG | 0.511831 | 7.4:+39054238 | None:intergenic |
| ATTCAATTTGGAGCCATTGA+AGG | 0.514991 | 7.4:-39052811 | MS.gene055128:CDS |
| GCGGTAGATGGACGAGCCAC+TGG | 0.515731 | 7.4:-39053502 | MS.gene055128:CDS |
| GAATATGTGACTGTGGAGGT+TGG | 0.516800 | 7.4:-39053076 | MS.gene055128:CDS |
| ATGAAGAGACATCATCATCA+AGG | 0.520342 | 7.4:-39054900 | MS.gene055128:CDS |
| AAACACCTTGGATATGAGTA+AGG | 0.521884 | 7.4:-39052697 | MS.gene055128:CDS |
| CAGCTTCCATCATCCTTCTC+CGG | 0.525212 | 7.4:+39053566 | None:intergenic |
| GCAAGAATTCGTCAAGAGAA+AGG | 0.528788 | 7.4:-39053318 | MS.gene055128:CDS |
| GGAGAAGGCTCTCCTTTGTT+CGG | 0.529112 | 7.4:+39053125 | None:intergenic |
| TCAAGGGAATTTGAGTCCAA+TGG | 0.531644 | 7.4:-39054742 | MS.gene055128:CDS |
| GATGAATAGTTTAGCTTCGC+CGG | 0.534341 | 7.4:-39053585 | MS.gene055128:CDS |
| GAAGCTATTGATTGAGAAAG+CGG | 0.535570 | 7.4:+39054376 | None:intergenic |
| CTATTTCTGACACTCTCAGT+TGG | 0.535664 | 7.4:+39054028 | None:intergenic |
| TAGTTCCTTACTCATATCCA+AGG | 0.539509 | 7.4:+39052692 | None:intergenic |
| ATGCCAGTTAGTGCAAAATC+CGG | 0.539511 | 7.4:-39053914 | MS.gene055128:CDS |
| ATATATTTCACTTCCTGAGG+AGG | 0.541445 | 7.4:-39054311 | MS.gene055128:CDS |
| ATCATATATTTCACTTCCTG+AGG | 0.551540 | 7.4:-39054314 | MS.gene055128:CDS |
| GATTATGTCCTATTTGGCGT+TGG | 0.552499 | 7.4:-39053365 | MS.gene055128:CDS |
| AGTTGAAATTTCTCAAGGTG+AGG | 0.553244 | 7.4:+39053002 | None:intergenic |
| AGATTCAAATATCAATGGAC+CGG | 0.553999 | 7.4:+39053895 | None:intergenic |
| TCAGAACGTTTGAGATAACC+TGG | 0.557520 | 7.4:+39055024 | None:intergenic |
| TTCTGAAGAAGAAGCAAGAT+CGG | 0.558134 | 7.4:+39054228 | None:intergenic |
| AGAAGTTTAAGTTTCAAGGA+GGG | 0.560404 | 7.4:-39053962 | MS.gene055128:CDS |
| CAATGAAACCAAGTTAAGGA+TGG | 0.567602 | 7.4:-39054515 | MS.gene055128:CDS |
| TCAAAGGACAAGAACTTCAA+GGG | 0.569610 | 7.4:-39053404 | MS.gene055128:CDS |
| AATTTGGAGCCATTGAAGGA+AGG | 0.569729 | 7.4:-39052807 | MS.gene055128:CDS |
| AAATATATGATGAGCCACTC+AGG | 0.573287 | 7.4:+39054326 | None:intergenic |
| AAAGATAAAGGTGTGTCAGT+TGG | 0.576688 | 7.4:-39054565 | MS.gene055128:CDS |
| GAGTAAGGAACTAAATTCCA+AGG | 0.585371 | 7.4:-39052682 | MS.gene055128:CDS |
| AGAGCACAGAATGAAATCAA+GGG | 0.585380 | 7.4:-39054758 | MS.gene055128:CDS |
| TTTCTCTTGACGAATTCTTG+CGG | 0.587979 | 7.4:+39053320 | None:intergenic |
| CAAGAAACTACCAAACACCT+TGG | 0.590783 | 7.4:-39052709 | MS.gene055128:CDS |
| TTGATCACAAAATGAAACAA+TGG | 0.590971 | 7.4:+39053635 | None:intergenic |
| CCAAGTTAAGGATGGATCAG+TGG | 0.592342 | 7.4:-39054507 | MS.gene055128:CDS |
| CATCGATGAATCAACGGAGA+AGG | 0.596877 | 7.4:+39053110 | None:intergenic |
| GGCGAAGCATGTAAGCCACC+TGG | 0.597285 | 7.4:+39053146 | None:intergenic |
| AAATCAGAAAATCGGCGCAA+AGG | 0.598918 | 7.4:-39055211 | MS.gene055128:CDS |
| TGGCGTTGGAGTTGATCAGC+CGG | 0.599915 | 7.4:-39053351 | MS.gene055128:CDS |
| TTACATGCTTCGCCGAACAA+AGG | 0.601458 | 7.4:-39053137 | MS.gene055128:CDS |
| ACTCTATCAACAGGAGAGAG+TGG | 0.611352 | 7.4:+39052627 | None:intergenic |
| AGGATCTAATAACCTCATGA+AGG | 0.612100 | 7.4:+39053805 | None:intergenic |
| GTTAAGGATGGATCAGTGGA+AGG | 0.614791 | 7.4:-39054503 | MS.gene055128:CDS |
| TAGAAGTTTAAGTTTCAAGG+AGG | 0.616245 | 7.4:-39053963 | MS.gene055128:CDS |
| AAGCAAGATCGGTCGCAGAA+GGG | 0.617306 | 7.4:+39054239 | None:intergenic |
| TGAAGAGACATCATCATCAA+GGG | 0.624031 | 7.4:-39054899 | MS.gene055128:CDS |
| CTTCTCCGTTGATTCATCGA+TGG | 0.624117 | 7.4:-39053109 | MS.gene055128:CDS |
| AATTTCCATCGATGAATCAA+CGG | 0.628997 | 7.4:+39053104 | None:intergenic |
| GATGAAGCTATAAGCATGCA+GGG | 0.633512 | 7.4:-39054667 | MS.gene055128:CDS |
| GAAAGCAGTTTGACACCGAT+AGG | 0.633974 | 7.4:-39053740 | MS.gene055128:CDS |
| ATTCATCGATGGAAATTAGG+CGG | 0.635874 | 7.4:-39053098 | MS.gene055128:CDS |
| AGCTGTTGAAGATGATGCTG+TGG | 0.655824 | 7.4:+39054873 | None:intergenic |
| AAGTTCAACAACGCAACATG+AGG | 0.658263 | 7.4:-39055073 | MS.gene055128:CDS |
| ACATATCAAGCACCTTCATG+AGG | 0.665636 | 7.4:-39053817 | MS.gene055128:CDS |
| CTATCAACAGGAGAGAGTGG+TGG | 0.667905 | 7.4:+39052630 | None:intergenic |
| AGCTTCGGCTTGAATCGGAT+AGG | 0.680158 | 7.4:-39053986 | MS.gene055128:CDS |
| ATTACAGTTATACTTCCAGG+TGG | 0.686522 | 7.4:-39053161 | MS.gene055128:CDS |
| TGGAACAAAGAAAAGAACTG+TGG | 0.688657 | 7.4:-39053482 | MS.gene055128:CDS |
| TTAGGCGGAATATGTGACTG+TGG | 0.699237 | 7.4:-39053083 | MS.gene055128:CDS |
| GGCGGAATATGTGACTGTGG+AGG | 0.752049 | 7.4:-39053080 | MS.gene055128:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGCAACTAACAATAAAAAA+TGG | - | chr7.4:39054213-39054232 | MS.gene055128:CDS | 20.0% |
| !!! | AAAAAGCTTGATGATAAAAA+AGG | - | chr7.4:39053034-39053053 | MS.gene055128:CDS | 20.0% |
| ! | AAACCACAAATTGATACATT+AGG | - | chr7.4:39052749-39052768 | MS.gene055128:CDS | 25.0% |
| ! | AATCACTTCAAAAAGAGAAA+AGG | - | chr7.4:39053173-39053192 | MS.gene055128:CDS | 25.0% |
| ! | CAAAAAGTTGAAATTTCTCA+AGG | + | chr7.4:39054881-39054900 | None:intergenic | 25.0% |
| ! | CAATTCTAGCAAAGATAATA+AGG | - | chr7.4:39054017-39054036 | MS.gene055128:CDS | 25.0% |
| ! | GAAGAAGATTCAAATATCAA+TGG | + | chr7.4:39053988-39054007 | None:intergenic | 25.0% |
| ! | GATAAAGCAAATCAGAAAAT+CGG | - | chr7.4:39052656-39052675 | MS.gene055128:CDS | 25.0% |
| ! | TAGAGATACTTTCATTGAAA+AGG | - | chr7.4:39053771-39053790 | MS.gene055128:CDS | 25.0% |
| ! | TCATTCTTGTCATAAATTTC+AGG | - | chr7.4:39055016-39055035 | MS.gene055128:CDS | 25.0% |
| ! | TTGATCACAAAATGAAACAA+TGG | + | chr7.4:39054243-39054262 | None:intergenic | 25.0% |
| !! | AAGTTAACATCATTTTCACA+AGG | + | chr7.4:39054609-39054628 | None:intergenic | 25.0% |
| !! | AGTTAACATCATTTTCACAA+GGG | + | chr7.4:39054608-39054627 | None:intergenic | 25.0% |
| !! | GAAATTTCAACTTTTTGTTC+AGG | - | chr7.4:39054884-39054903 | MS.gene055128:CDS | 25.0% |
| !! | TTTTCTTGATTTCATCAAGA+AGG | + | chr7.4:39054350-39054369 | None:intergenic | 25.0% |
| !!! | AGAATGTTTTTGATCAACAT+CGG | + | chr7.4:39053407-39053426 | None:intergenic | 25.0% |
| !!! | ATATTTATTTGCTATCTCCT+TGG | + | chr7.4:39055213-39055232 | None:intergenic | 25.0% |
| !!! | TGAAAGTATCTCTATTAGAT+TGG | + | chr7.4:39053765-39053784 | None:intergenic | 25.0% |
| AAAGAGAGAAGTCTTAATTC+CGG | - | chr7.4:39053256-39053275 | MS.gene055128:CDS | 30.0% | |
| AAGAAAAAACATCCAAGAGA+AGG | - | chr7.4:39052880-39052899 | MS.gene055128:intron | 30.0% | |
| AATTTCCATCGATGAATCAA+CGG | + | chr7.4:39054774-39054793 | None:intergenic | 30.0% | |
| AGATTCAAATATCAATGGAC+CGG | + | chr7.4:39053983-39054002 | None:intergenic | 30.0% | |
| AGCAAAGATAATAAGGTGAA+TGG | - | chr7.4:39054024-39054043 | MS.gene055128:CDS | 30.0% | |
| ATCATATATTTCACTTCCTG+AGG | - | chr7.4:39053561-39053580 | MS.gene055128:CDS | 30.0% | |
| CATATGACCAGCAATATTAT+AGG | + | chr7.4:39054424-39054443 | None:intergenic | 30.0% | |
| CCACAAGAAAATGATATTTC+TGG | - | chr7.4:39054684-39054703 | MS.gene055128:CDS | 30.0% | |
| CTAAGAAATCAATGTTCTAC+TGG | - | chr7.4:39053811-39053830 | MS.gene055128:CDS | 30.0% | |
| CTCAAAAATCACTGAATCAA+AGG | - | chr7.4:39054455-39054474 | MS.gene055128:CDS | 30.0% | |
| GATGAAATCAAGAAAAAGAG+CGG | - | chr7.4:39054354-39054373 | MS.gene055128:CDS | 30.0% | |
| GTGAAAGATTATGTCCTATT+TGG | - | chr7.4:39054504-39054523 | MS.gene055128:CDS | 30.0% | |
| GTTAAACAATGTCGAAATTC+TGG | - | chr7.4:39053076-39053095 | MS.gene055128:CDS | 30.0% | |
| TATCTCAAACGTTCTGATAA+AGG | - | chr7.4:39052857-39052876 | MS.gene055128:intron | 30.0% | |
| TCTCCTAATGTATCAATTTG+TGG | + | chr7.4:39052755-39052774 | None:intergenic | 30.0% | |
| TCTTGTCATAAATTTCAGGA+AGG | - | chr7.4:39055020-39055039 | MS.gene055128:CDS | 30.0% | |
| TGAGGTTATTAGATCCTATA+TGG | - | chr7.4:39054076-39054095 | MS.gene055128:CDS | 30.0% | |
| TTGATTCATCGATGGAAATT+AGG | - | chr7.4:39054774-39054793 | MS.gene055128:CDS | 30.0% | |
| ! | AGAAGTTTAAGTTTCAAGGA+GGG | - | chr7.4:39053913-39053932 | MS.gene055128:CDS | 30.0% |
| ! | AGGTAGAAGTTTAAGTTTCA+AGG | - | chr7.4:39053909-39053928 | MS.gene055128:CDS | 30.0% |
| ! | CCAGAAATATCATTTTCTTG+TGG | + | chr7.4:39054687-39054706 | None:intergenic | 30.0% |
| ! | CCTTTATCTTTTCGTTCTAA+CGG | + | chr7.4:39053301-39053320 | None:intergenic | 30.0% |
| ! | CTCTAACTGAATTTTTCCAT+TGG | + | chr7.4:39053152-39053171 | None:intergenic | 30.0% |
| ! | GATGCTTTATTCTTCCATAT+AGG | + | chr7.4:39054093-39054112 | None:intergenic | 30.0% |
| ! | TAGAAGTTTAAGTTTCAAGG+AGG | - | chr7.4:39053912-39053931 | MS.gene055128:CDS | 30.0% |
| !! | CAAGAGAAGGCTTTAAATTT+CGG | - | chr7.4:39052893-39052912 | MS.gene055128:intron | 30.0% |
| !! | TAAATTTCGGTGTTCTTGAT+TGG | - | chr7.4:39052906-39052925 | MS.gene055128:intron | 30.0% |
| !! | TGATTTGCTTTATCTTTCTG+AGG | + | chr7.4:39052650-39052669 | None:intergenic | 30.0% |
| !!! | AAAAGCATCTTTTATCTGCA+AGG | + | chr7.4:39054659-39054678 | None:intergenic | 30.0% |
| !!! | GACTTCTCTCTTTTTTCTTA+AGG | + | chr7.4:39053249-39053268 | None:intergenic | 30.0% |
| AAACACCTTGGATATGAGTA+AGG | - | chr7.4:39055178-39055197 | MS.gene055128:CDS | 35.0% | |
| AAATATATGATGAGCCACTC+AGG | + | chr7.4:39053552-39053571 | None:intergenic | 35.0% | |
| AACGAGCTTTCGAACAAATA+AGG | - | chr7.4:39054170-39054189 | MS.gene055128:CDS | 35.0% | |
| AGAGCACAGAATGAAATCAA+GGG | - | chr7.4:39053117-39053136 | MS.gene055128:CDS | 35.0% | |
| AGCATTACAGTTATACTTCC+AGG | - | chr7.4:39054711-39054730 | MS.gene055128:CDS | 35.0% | |
| AGGATCTAATAACCTCATGA+AGG | + | chr7.4:39054073-39054092 | None:intergenic | 35.0% | |
| AGTTGAAATTTCTCAAGGTG+AGG | + | chr7.4:39054876-39054895 | None:intergenic | 35.0% | |
| ATATATTTCACTTCCTGAGG+AGG | - | chr7.4:39053564-39053583 | MS.gene055128:CDS | 35.0% | |
| ATCAAAGGACAAGAACTTCA+AGG | - | chr7.4:39054470-39054489 | MS.gene055128:CDS | 35.0% | |
| ATGAAGAGACATCATCATCA+AGG | - | chr7.4:39052975-39052994 | MS.gene055128:intron | 35.0% | |
| ATTACAGTTATACTTCCAGG+TGG | - | chr7.4:39054714-39054733 | MS.gene055128:CDS | 35.0% | |
| ATTCATCGATGGAAATTAGG+CGG | - | chr7.4:39054777-39054796 | MS.gene055128:CDS | 35.0% | |
| CAATGAAACCAAGTTAAGGA+TGG | - | chr7.4:39053360-39053379 | MS.gene055128:CDS | 35.0% | |
| CAATGGCTCCAAATTGAATA+AGG | + | chr7.4:39055063-39055082 | None:intergenic | 35.0% | |
| CCGTTAGAACGAAAAGATAA+AGG | - | chr7.4:39053298-39053317 | MS.gene055128:CDS | 35.0% | |
| CTTCATTGCTATCGAACAAT+TGG | + | chr7.4:39052961-39052980 | None:intergenic | 35.0% | |
| GAAGCAATGAAACCAAGTTA+AGG | - | chr7.4:39053356-39053375 | MS.gene055128:CDS | 35.0% | |
| GAGTAAGGAACTAAATTCCA+AGG | - | chr7.4:39055193-39055212 | MS.gene055128:CDS | 35.0% | |
| GGATATGCCTATAATATTGC+TGG | - | chr7.4:39054414-39054433 | MS.gene055128:CDS | 35.0% | |
| TAACTTGGTTTCATTGCTTC+TGG | + | chr7.4:39053356-39053375 | None:intergenic | 35.0% | |
| TAGTTCCTTACTCATATCCA+AGG | + | chr7.4:39055186-39055205 | None:intergenic | 35.0% | |
| TCAAAGGACAAGAACTTCAA+GGG | - | chr7.4:39054471-39054490 | MS.gene055128:CDS | 35.0% | |
| TCTGAAAATCAGCTTAGCTT+CGG | - | chr7.4:39053874-39053893 | MS.gene055128:CDS | 35.0% | |
| TGAAGAGACATCATCATCAA+GGG | - | chr7.4:39052976-39052995 | MS.gene055128:intron | 35.0% | |
| TGGAACAAAGAAAAGAACTG+TGG | - | chr7.4:39054393-39054412 | MS.gene055128:CDS | 35.0% | |
| TGTGATCAACAGTGAAAGAA+AGG | - | chr7.4:39054254-39054273 | MS.gene055128:CDS | 35.0% | |
| TTCGAAAGCTCGTTGAATTT+GGG | + | chr7.4:39054164-39054183 | None:intergenic | 35.0% | |
| TTTCTCTTGACGAATTCTTG+CGG | + | chr7.4:39054558-39054577 | None:intergenic | 35.0% | |
| ! | AAAGATAAAGGTGTGTCAGT+TGG | - | chr7.4:39053310-39053329 | MS.gene055128:CDS | 35.0% |
| ! | AGTTCTTTTCTTTGTTCCAG+TGG | + | chr7.4:39054392-39054411 | None:intergenic | 35.0% |
| ! | ATTCAATTTGGAGCCATTGA+AGG | - | chr7.4:39055064-39055083 | MS.gene055128:CDS | 35.0% |
| ! | CGAAATTTAAAGCCTTCTCT+TGG | + | chr7.4:39052895-39052914 | None:intergenic | 35.0% |
| ! | GAAGCTATTGATTGAGAAAG+CGG | + | chr7.4:39053502-39053521 | None:intergenic | 35.0% |
| ! | TTACTCATATCCAAGGTGTT+TGG | + | chr7.4:39055179-39055198 | None:intergenic | 35.0% |
| ! | TTATCTTTTCGTTCTAACGG+TGG | + | chr7.4:39053298-39053317 | None:intergenic | 35.0% |
| ! | TTCGACTGCAGAAATTTTCT+CGG | + | chr7.4:39053463-39053482 | None:intergenic | 35.0% |
| ! | TTCTGAAGAAGAAGCAAGAT+CGG | + | chr7.4:39053650-39053669 | None:intergenic | 35.0% |
| !! | AGACACAGCCTTATTCAATT+TGG | - | chr7.4:39055052-39055071 | MS.gene055128:CDS | 35.0% |
| !! | TGATGTTAACTTGCTGAAGA+AGG | - | chr7.4:39054617-39054636 | MS.gene055128:CDS | 35.0% |
| !! | TGGAAGTCGATTTTCAAAAC+CGG | + | chr7.4:39053278-39053297 | None:intergenic | 35.0% |
| AAATCAGAAAATCGGCGCAA+AGG | - | chr7.4:39052664-39052683 | MS.gene055128:CDS | 40.0% | |
| AAGTTCAACAACGCAACATG+AGG | - | chr7.4:39052802-39052821 | MS.gene055128:CDS | 40.0% | |
| AATATGTGACTGTGGAGGTT+GGG | - | chr7.4:39054800-39054819 | MS.gene055128:CDS | 40.0% | |
| AATTCTTGCGGTTGTTGATC+CGG | + | chr7.4:39054546-39054565 | None:intergenic | 40.0% | |
| ACATATCAAGCACCTTCATG+AGG | - | chr7.4:39054058-39054077 | MS.gene055128:CDS | 40.0% | |
| ATGCCAGTTAGTGCAAAATC+CGG | - | chr7.4:39053961-39053980 | MS.gene055128:CDS | 40.0% | |
| CAAGAAACTACCAAACACCT+TGG | - | chr7.4:39055166-39055185 | MS.gene055128:CDS | 40.0% | |
| CATCATCTTCAACAGCTAGA+AGG | - | chr7.4:39053008-39053027 | MS.gene055128:CDS | 40.0% | |
| CGAAGCAAAACAATGTCTCT+TGG | + | chr7.4:39053439-39053458 | None:intergenic | 40.0% | |
| CTGAGGTCTCAAGTCTATAT+CGG | + | chr7.4:39052633-39052652 | None:intergenic | 40.0% | |
| GAGTAGAATCCTTCCTTCAA+TGG | + | chr7.4:39055080-39055099 | None:intergenic | 40.0% | |
| GATGAAGCTATAAGCATGCA+GGG | - | chr7.4:39053208-39053227 | MS.gene055128:CDS | 40.0% | |
| GATTATGTCCTATTTGGCGT+TGG | - | chr7.4:39054510-39054529 | MS.gene055128:CDS | 40.0% | |
| GCAAGAATTCGTCAAGAGAA+AGG | - | chr7.4:39054557-39054576 | MS.gene055128:CDS | 40.0% | |
| GTTCGAAAGCTCGTTGAATT+TGG | + | chr7.4:39054165-39054184 | None:intergenic | 40.0% | |
| GTTGAATTTGGGCTACCTAT+CGG | + | chr7.4:39054153-39054172 | None:intergenic | 40.0% | |
| TCAAACTGCTTTCGGATGAA+TGG | + | chr7.4:39054128-39054147 | None:intergenic | 40.0% | |
| TCAAGAAAAAGAGCGGTAGA+TGG | - | chr7.4:39054361-39054380 | MS.gene055128:CDS | 40.0% | |
| TCAAGGGAATTTGAGTCCAA+TGG | - | chr7.4:39053133-39053152 | MS.gene055128:CDS | 40.0% | |
| ! | AAGCACATGTCTAATTTGCC+AGG | - | chr7.4:39052833-39052852 | MS.gene055128:CDS | 40.0% |
| ! | AATTTGGAGCCATTGAAGGA+AGG | - | chr7.4:39055068-39055087 | MS.gene055128:CDS | 40.0% |
| ! | GAGAGCACAGAATGAAATCA+AGG | - | chr7.4:39053116-39053135 | MS.gene055128:CDS | 40.0% |
| ! | GATGAATAGTTTAGCTTCGC+CGG | - | chr7.4:39054290-39054309 | MS.gene055128:CDS | 40.0% |
| ! | TCAGAACGTTTGAGATAACC+TGG | + | chr7.4:39052854-39052873 | None:intergenic | 40.0% |
| ! | TCTGGAACTCACTTTCTTCT+CGG | + | chr7.4:39053338-39053357 | None:intergenic | 40.0% |
| ! | TTTTCAGAATCAAGCCTGAG+TGG | - | chr7.4:39053535-39053554 | MS.gene055128:CDS | 40.0% |
| !! | CTATTTCTGACACTCTCAGT+TGG | + | chr7.4:39053850-39053869 | None:intergenic | 40.0% |
| !! | TATCGGTGTCAAACTGCTTT+CGG | + | chr7.4:39054136-39054155 | None:intergenic | 40.0% |
| !!! | CATGGAGCTTTGTTTTGGAA+TGG | + | chr7.4:39053944-39053963 | None:intergenic | 40.0% |
| !!! | GAGCTTTGTTTTGGAATGGT+AGG | + | chr7.4:39053940-39053959 | None:intergenic | 40.0% |
| ACTCTATCAACAGGAGAGAG+TGG | + | chr7.4:39055251-39055270 | None:intergenic | 45.0% | |
| AGCTGTTGAAGATGATGCTG+TGG | + | chr7.4:39053005-39053024 | None:intergenic | 45.0% | |
| ATTGGTCGCAGCTCGAAAAA+TGG | - | chr7.4:39052924-39052943 | MS.gene055128:intron | 45.0% | |
| CAAAGGCAGTTATGCAGTCT+AGG | - | chr7.4:39052681-39052700 | MS.gene055128:CDS | 45.0% | |
| CATCGATGAATCAACGGAGA+AGG | + | chr7.4:39054768-39054787 | None:intergenic | 45.0% | |
| CCAAGTTAAGGATGGATCAG+TGG | - | chr7.4:39053368-39053387 | MS.gene055128:CDS | 45.0% | |
| CCACTGATCCATCCTTAACT+TGG | + | chr7.4:39053371-39053390 | None:intergenic | 45.0% | |
| CGATGAAGCTATAAGCATGC+AGG | - | chr7.4:39053207-39053226 | MS.gene055128:CDS | 45.0% | |
| GAAAGCAGTTTGACACCGAT+AGG | - | chr7.4:39054135-39054154 | MS.gene055128:CDS | 45.0% | |
| GAACTTCAAGGGACAGTGTA+TGG | - | chr7.4:39054482-39054501 | MS.gene055128:CDS | 45.0% | |
| GAATATGTGACTGTGGAGGT+TGG | - | chr7.4:39054799-39054818 | MS.gene055128:CDS | 45.0% | |
| GACATCTTATTCGAGCGATC+AGG | + | chr7.4:39053736-39053755 | None:intergenic | 45.0% | |
| GATCAACTCCAACGCCAAAT+AGG | + | chr7.4:39054521-39054540 | None:intergenic | 45.0% | |
| GTTAAGGATGGATCAGTGGA+AGG | - | chr7.4:39053372-39053391 | MS.gene055128:CDS | 45.0% | |
| TTACATGCTTCGCCGAACAA+AGG | - | chr7.4:39054738-39054757 | MS.gene055128:CDS | 45.0% | |
| TTAGGCGGAATATGTGACTG+TGG | - | chr7.4:39054792-39054811 | MS.gene055128:CDS | 45.0% | |
| ! | AGCTTAGCTTCGGCTTGAAT+CGG | - | chr7.4:39053884-39053903 | MS.gene055128:CDS | 45.0% |
| ! | GGATTTTGCACTAACTGGCA+TGG | + | chr7.4:39053962-39053981 | None:intergenic | 45.0% |
| ! | TTTTCAGTGTAAGCCTCCTC+AGG | + | chr7.4:39053580-39053599 | None:intergenic | 45.0% |
| !! | CTTCTCCGTTGATTCATCGA+TGG | - | chr7.4:39054766-39054785 | MS.gene055128:CDS | 45.0% |
| !!! | ACTGGCATGGAGCTTTGTTT+TGG | + | chr7.4:39053949-39053968 | None:intergenic | 45.0% |
| !!! | CAAGGTGAGGTTTTGAACTC+AGG | + | chr7.4:39054863-39054882 | None:intergenic | 45.0% |
| !!! | GAGGTTTTGAACTCAGGTTC+TGG | + | chr7.4:39054857-39054876 | None:intergenic | 45.0% |
| AAGCAAGATCGGTCGCAGAA+GGG | + | chr7.4:39053639-39053658 | None:intergenic | 50.0% | |
| CAGCTTCCATCATCCTTCTC+CGG | + | chr7.4:39054312-39054331 | None:intergenic | 50.0% | |
| CTATCAACAGGAGAGAGTGG+TGG | + | chr7.4:39055248-39055267 | None:intergenic | 50.0% | |
| GGAGAAGGCTCTCCTTTGTT+CGG | + | chr7.4:39054753-39054772 | None:intergenic | 50.0% | |
| ! | AGCTTCGGCTTGAATCGGAT+AGG | - | chr7.4:39053889-39053908 | MS.gene055128:CDS | 50.0% |
| ! | GGACCGGATTTTGCACTAAC+TGG | + | chr7.4:39053967-39053986 | None:intergenic | 50.0% |
| ! | TAGTTTAGCTTCGCCGGAGA+AGG | - | chr7.4:39054296-39054315 | MS.gene055128:CDS | 50.0% |
| GAAGCAAGATCGGTCGCAGA+AGG | + | chr7.4:39053640-39053659 | None:intergenic | 55.0% | |
| GACTGTGGAGGTTGGGATGT+TGG | - | chr7.4:39054807-39054826 | MS.gene055128:CDS | 55.0% | |
| GGCGGAATATGTGACTGTGG+AGG | - | chr7.4:39054795-39054814 | MS.gene055128:CDS | 55.0% | |
| ! | TGGCGTTGGAGTTGATCAGC+CGG | - | chr7.4:39054524-39054543 | MS.gene055128:CDS | 55.0% |
| GCTTCGCCGGAGAAGGATGA+TGG | - | chr7.4:39054303-39054322 | MS.gene055128:CDS | 60.0% | |
| GGCGAAGCATGTAAGCCACC+TGG | + | chr7.4:39054732-39054751 | None:intergenic | 60.0% | |
| GCGGTAGATGGACGAGCCAC+TGG | - | chr7.4:39054373-39054392 | MS.gene055128:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 39052623 | 39055274 | 39052623 | ID=MS.gene055128 |
| chr7.4 | mRNA | 39052623 | 39055274 | 39052623 | ID=MS.gene055128.t1;Parent=MS.gene055128 |
| chr7.4 | exon | 39052992 | 39055274 | 39052992 | ID=MS.gene055128.t1.exon1;Parent=MS.gene055128.t1 |
| chr7.4 | CDS | 39052992 | 39055274 | 39052992 | ID=cds.MS.gene055128.t1;Parent=MS.gene055128.t1 |
| chr7.4 | exon | 39052623 | 39052859 | 39052623 | ID=MS.gene055128.t1.exon2;Parent=MS.gene055128.t1 |
| chr7.4 | CDS | 39052623 | 39052859 | 39052623 | ID=cds.MS.gene055128.t1;Parent=MS.gene055128.t1 |
| Gene Sequence |
| Protein sequence |
