Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071428.t1 | XP_024626987.1 | 94.1 | 598 | 8 | 2 | 1 | 571 | 32 | 629 | 1.7e-309 | 1071.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071428.t1 | Q9SA69 | 65.5 | 614 | 158 | 10 | 1 | 571 | 32 | 634 | 3.8e-206 | 719.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071428.t1 | A0A396HDB7 | 94.1 | 598 | 8 | 2 | 1 | 571 | 32 | 629 | 1.2e-309 | 1071.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049133 | MS.gene071428 | 0.803178 | 3.95E-49 | -1.69E-46 |
| MS.gene049418 | MS.gene071428 | 0.882198 | 1.27E-70 | -1.69E-46 |
| MS.gene049660 | MS.gene071428 | 0.82287 | 1.88E-53 | -1.69E-46 |
| MS.gene049697 | MS.gene071428 | 0.828831 | 7.22E-55 | -1.69E-46 |
| MS.gene049989 | MS.gene071428 | 0.808338 | 3.25E-50 | -1.69E-46 |
| MS.gene05054 | MS.gene071428 | 0.819673 | 1.03E-52 | -1.69E-46 |
| MS.gene051067 | MS.gene071428 | 0.829652 | 4.57E-55 | -1.69E-46 |
| MS.gene051478 | MS.gene071428 | 0.806486 | 8.04E-50 | -1.69E-46 |
| MS.gene051648 | MS.gene071428 | 0.81308 | 3.07E-51 | -1.69E-46 |
| MS.gene052151 | MS.gene071428 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene052383 | MS.gene071428 | 0.833345 | 5.62E-56 | -1.69E-46 |
| MS.gene053500 | MS.gene071428 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene071428 | 0.808078 | 3.70E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene071428 | 0.808334 | 3.26E-50 | -1.69E-46 |
| MS.gene054614 | MS.gene071428 | 0.833646 | 4.73E-56 | -1.69E-46 |
| MS.gene055128 | MS.gene071428 | 0.801895 | 7.26E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene071428 | 0.803035 | 4.22E-49 | -1.69E-46 |
| MS.gene056228 | MS.gene071428 | 0.812018 | 5.24E-51 | -1.69E-46 |
| MS.gene056704 | MS.gene071428 | 0.835966 | 1.23E-56 | -1.69E-46 |
| MS.gene056870 | MS.gene071428 | 0.840145 | 1.04E-57 | -1.69E-46 |
| MS.gene05709 | MS.gene071428 | 0.838143 | 3.42E-57 | -1.69E-46 |
| MS.gene058197 | MS.gene071428 | 0.810272 | 1.25E-50 | -1.69E-46 |
| MS.gene058198 | MS.gene071428 | 0.806869 | 6.67E-50 | -1.69E-46 |
| MS.gene058386 | MS.gene071428 | 0.802977 | 4.34E-49 | -1.69E-46 |
| MS.gene05866 | MS.gene071428 | 0.804026 | 2.63E-49 | -1.69E-46 |
| MS.gene058823 | MS.gene071428 | 0.801603 | 8.33E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene071428 | 0.812198 | 4.78E-51 | -1.69E-46 |
| MS.gene059424 | MS.gene071428 | 0.801693 | 7.98E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene071428 | 0.80733 | 5.33E-50 | -1.69E-46 |
| MS.gene060825 | MS.gene071428 | 0.801833 | 7.47E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 96 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAGTTTCCTCTTGTTTCT+AGG | 0.099813 | 7.1:+5809815 | MS.gene071428:intron |
| CACCAATCTAAGGGTGTTTC+TGG | 0.142169 | 7.1:-5810275 | None:intergenic |
| GAGAAAATTGTCAAGTAATT+TGG | 0.180360 | 7.1:-5810854 | None:intergenic |
| AAGAGTTGATCAGCAAAATT+TGG | 0.243895 | 7.1:+5810375 | MS.gene071428:CDS |
| TTTCTAGGAGTGGAAGATTT+AGG | 0.247375 | 7.1:+5809830 | MS.gene071428:CDS |
| TTCTTTACTACGAACAAATA+AGG | 0.259310 | 7.1:+5811454 | MS.gene071428:CDS |
| AGAATTCTCAGAAAAGAATT+TGG | 0.264671 | 7.1:+5810029 | MS.gene071428:CDS |
| AACTTCTTGTAGAAGTGATT+TGG | 0.280903 | 7.1:+5810585 | MS.gene071428:CDS |
| ATCTTGTTTGGTGGTATTCA+TGG | 0.287931 | 7.1:+5811510 | MS.gene071428:CDS |
| ATTTACCTTGTGAAGTGAAT+AGG | 0.350440 | 7.1:-5809296 | None:intergenic |
| AGAGTTTCCCCACCAATCTA+AGG | 0.353136 | 7.1:-5810285 | None:intergenic |
| GAGAATGAGGTTGAATGATT+TGG | 0.354022 | 7.1:+5811647 | MS.gene071428:CDS |
| AGTATTCGTGGCAGTGGAAC+TGG | 0.358592 | 7.1:+5811783 | MS.gene071428:CDS |
| AGCTGTTGACATCTTCCTTA+AGG | 0.360096 | 7.1:+5810978 | MS.gene071428:CDS |
| TTAAGAATTGAGCTTTGCTT+TGG | 0.368579 | 7.1:-5810826 | None:intergenic |
| TTCTAAAACATTATCAATGA+TGG | 0.372684 | 7.1:+5810250 | MS.gene071428:CDS |
| TGTATAATGTTCGATGTGTT+TGG | 0.373596 | 7.1:-5810090 | None:intergenic |
| CAAAGATCAGGGAGTGGTAT+AGG | 0.379986 | 7.1:+5811543 | MS.gene071428:CDS |
| GGACACAATCAAATCTTGTT+TGG | 0.395537 | 7.1:+5811498 | MS.gene071428:CDS |
| AAACATGAAAGAAATGCTAT+TGG | 0.398126 | 7.1:-5810532 | None:intergenic |
| TTTCTTCGAACGAGTTATAT+CGG | 0.401205 | 7.1:+5810328 | MS.gene071428:CDS |
| ATAGGTTCATCCGAACATTA+AGG | 0.402802 | 7.1:+5811320 | MS.gene071428:intron |
| GAAAGGCTACCAGTTCAAAT+AGG | 0.406258 | 7.1:+5811423 | MS.gene071428:CDS |
| TGCAAAGAGCAACTAACTTC+TGG | 0.410485 | 7.1:+5810200 | MS.gene071428:intron |
| GGTCAATTTCCTCAAAGATC+AGG | 0.415797 | 7.1:+5811531 | MS.gene071428:CDS |
| AAAGCAAAGCTCAATTCTTA+AGG | 0.417656 | 7.1:+5810828 | MS.gene071428:CDS |
| GAGCTTTGCTTTGGAGATCC+AGG | 0.425100 | 7.1:-5810817 | None:intergenic |
| AGCACTTGCAGAACTACTTC+CGG | 0.434035 | 7.1:+5810921 | MS.gene071428:CDS |
| ATACCACTCCCTGATCTTTG+AGG | 0.435450 | 7.1:-5811540 | None:intergenic |
| AGGTTGATATCTTCTGATAA+AGG | 0.437448 | 7.1:-5810141 | None:intergenic |
| TCACTGGAGACATCAGATAT+TGG | 0.444897 | 7.1:-5809247 | None:intergenic |
| GCTTACTACCAACTCAATCT+AGG | 0.447056 | 7.1:+5810497 | MS.gene071428:CDS |
| GTATAATGTTCGATGTGTTT+GGG | 0.449390 | 7.1:-5810089 | None:intergenic |
| ACTTGTACACCTATTTGAAC+TGG | 0.460924 | 7.1:-5811432 | None:intergenic |
| CGCTCCGAGTCCTTAATGTT+CGG | 0.462622 | 7.1:-5811330 | None:intergenic |
| TTCCGTATTCACAGTATTCG+TGG | 0.463092 | 7.1:+5811771 | MS.gene071428:CDS |
| AGGCTTCGAAATGCGATGAA+TGG | 0.467453 | 7.1:+5811474 | MS.gene071428:CDS |
| TTTCCTCTTGTTTCTAGGAG+TGG | 0.473410 | 7.1:+5809820 | MS.gene071428:CDS |
| TCAGGGAGTGGTATAGGAAG+TGG | 0.474984 | 7.1:+5811549 | MS.gene071428:CDS |
| GGAAACCGGGACCGTGGTTG+TGG | 0.476979 | 7.1:-5811816 | None:intergenic |
| TGCCACGAATACTGTGAATA+CGG | 0.478137 | 7.1:-5811773 | None:intergenic |
| CTTGTAACGCGAGCATGATC+CGG | 0.480182 | 7.1:-5810940 | None:intergenic |
| GATCGGTTTACAACTCGATC+AGG | 0.481839 | 7.1:+5810615 | MS.gene071428:CDS |
| GTAAGTCTTCCGACCGTGCC+AGG | 0.485055 | 7.1:+5809892 | MS.gene071428:CDS |
| TACTTGGATGGTAAGATCAC+TGG | 0.486316 | 7.1:-5809263 | None:intergenic |
| TCTTCTGCAATTCAATGTCA+AGG | 0.497562 | 7.1:-5810444 | None:intergenic |
| AAGAGCTGAATCATATCTAA+AGG | 0.501938 | 7.1:+5810056 | MS.gene071428:CDS |
| AATAGGTTGATGCTCCTACT+TGG | 0.504109 | 7.1:-5809279 | None:intergenic |
| AACCAGAAACACCCTTAGAT+TGG | 0.511015 | 7.1:+5810273 | MS.gene071428:CDS |
| CTTCTGCAATTCAATGTCAA+GGG | 0.515528 | 7.1:-5810443 | None:intergenic |
| AAACACATCGAACATTATAC+AGG | 0.516060 | 7.1:+5810092 | MS.gene071428:CDS |
| CACAATCAAATCTTGTTTGG+TGG | 0.524281 | 7.1:+5811501 | MS.gene071428:CDS |
| ATAGCTGCAAAATTCTGCTA+TGG | 0.525366 | 7.1:+5809934 | MS.gene071428:CDS |
| GAGTATGAATTTGACAGTCC+TGG | 0.526590 | 7.1:+5810799 | MS.gene071428:CDS |
| TGAATCATATCTAAAGGAAA+CGG | 0.538877 | 7.1:+5810062 | MS.gene071428:CDS |
| ATTCACAGTATTCGTGGCAG+TGG | 0.549968 | 7.1:+5811777 | MS.gene071428:CDS |
| TGCATCTACACCACCTGGCA+CGG | 0.550474 | 7.1:-5809905 | None:intergenic |
| TCATCCGAACATTAAGGACT+CGG | 0.556784 | 7.1:+5811326 | MS.gene071428:CDS |
| GTCAATTTCCTCAAAGATCA+GGG | 0.559074 | 7.1:+5811532 | MS.gene071428:CDS |
| AGAAACACCCTTAGATTGGT+GGG | 0.561564 | 7.1:+5810277 | MS.gene071428:CDS |
| GCCATGCCGCACAAAATGAA+AGG | 0.570379 | 7.1:+5811406 | MS.gene071428:CDS |
| ACCGATGCATAGTTATCTCT+AGG | 0.575158 | 7.1:-5811582 | None:intergenic |
| GATTTGAAGAATTTGCGTGC+AGG | 0.575709 | 7.1:-5811714 | None:intergenic |
| TTGAATTGCAGAAGAAACAA+AGG | 0.576448 | 7.1:+5810452 | MS.gene071428:CDS |
| CTAGTCCACAACCACGGTCC+CGG | 0.580906 | 7.1:+5811811 | MS.gene071428:CDS |
| TCCTAGAGATAACTATGCAT+CGG | 0.582662 | 7.1:+5811581 | MS.gene071428:CDS |
| AAGTAACAAGAATGAGAATG+AGG | 0.586252 | 7.1:+5811634 | MS.gene071428:CDS |
| CAGAAACACCCTTAGATTGG+TGG | 0.586270 | 7.1:+5810276 | MS.gene071428:CDS |
| GGTTGATGCTCCTACTTGGA+TGG | 0.586634 | 7.1:-5809275 | None:intergenic |
| CTTGTAGAAGTGATTTGGAG+AGG | 0.587525 | 7.1:+5810590 | MS.gene071428:CDS |
| TGAATTGCAGAAGAAACAAA+GGG | 0.588131 | 7.1:+5810453 | MS.gene071428:CDS |
| GCACTCGAAGGTGAATTCGT+TGG | 0.590719 | 7.1:-5810661 | None:intergenic |
| AGTGATTTGGAGAGGCGGAT+CGG | 0.592594 | 7.1:+5810598 | MS.gene071428:CDS |
| TCTACACCACCTGGCACGGT+CGG | 0.595705 | 7.1:-5809901 | None:intergenic |
| CTTCCACTCCTAGAAACAAG+AGG | 0.596628 | 7.1:-5809823 | None:intergenic |
| GAGTTTCCCCACCAATCTAA+GGG | 0.605139 | 7.1:-5810284 | None:intergenic |
| ATATCGGTTATGAAATCGAA+GGG | 0.606291 | 7.1:+5810344 | MS.gene071428:CDS |
| AGTGATCTTACCATCCAAGT+AGG | 0.606850 | 7.1:+5809265 | MS.gene071428:CDS |
| CTTCGAAATGCGATGAATGG+AGG | 0.608119 | 7.1:+5811477 | MS.gene071428:CDS |
| TGAAAAGGAAACCGGGACCG+TGG | 0.620189 | 7.1:-5811822 | None:intergenic |
| TCAAATGCATCTACACCACC+TGG | 0.627222 | 7.1:-5809910 | None:intergenic |
| TATATCGGTTATGAAATCGA+AGG | 0.631995 | 7.1:+5810343 | MS.gene071428:CDS |
| ATCAACCTATTCACTTCACA+AGG | 0.635818 | 7.1:+5809291 | MS.gene071428:CDS |
| TAGCATAGCAATATTCGAGA+GGG | 0.638972 | 7.1:-5809974 | None:intergenic |
| TTTCCTCAAAGATCAGGGAG+TGG | 0.639154 | 7.1:+5811537 | MS.gene071428:CDS |
| GAAACACCCTTAGATTGGTG+GGG | 0.662827 | 7.1:+5810278 | MS.gene071428:CDS |
| GTAGAAGTGATTTGGAGAGG+CGG | 0.668323 | 7.1:+5810593 | MS.gene071428:CDS |
| ATAGCATAGCAATATTCGAG+AGG | 0.677800 | 7.1:-5809975 | None:intergenic |
| AGTCTTCCGACCGTGCCAGG+TGG | 0.688935 | 7.1:+5809895 | MS.gene071428:CDS |
| CATGCTCGCGTTACAAGCGA+CGG | 0.689890 | 7.1:+5810946 | MS.gene071428:CDS |
| TTCGTGGCAGTGGAACTGGA+AGG | 0.695731 | 7.1:+5811787 | MS.gene071428:CDS |
| ATTCTGCTATGGAATCAATG+TGG | 0.703925 | 7.1:+5809945 | MS.gene071428:CDS |
| ACTATAGTCATGAAACTGAG+TGG | 0.715336 | 7.1:-5811857 | None:intergenic |
| ATTGTGTTGTGAGCACTCGA+AGG | 0.726239 | 7.1:-5810673 | None:intergenic |
| GAAGGTCTAGTCCACAACCA+CGG | 0.728361 | 7.1:+5811805 | MS.gene071428:CDS |
| ACGGTCGGAAGACTTACGCG+CGG | 0.751124 | 7.1:-5809886 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAACATATCAGAA+TGG | - | chr7.1:5809334-5809353 | None:intergenic | 15.0% |
| !! | TTATAATTATACATTCAACA+TGG | + | chr7.1:5809344-5809363 | MS.gene071428:intron | 15.0% |
| !!! | AATATTATTTTCTAACGTTA+TGG | - | chr7.1:5811104-5811123 | None:intergenic | 15.0% |
| !!! | ATATTATTTTCTAACGTTAT+GGG | - | chr7.1:5811103-5811122 | None:intergenic | 15.0% |
| !!! | TTTAAAACCTTTTATACTAA+CGG | - | chr7.1:5809491-5809510 | None:intergenic | 15.0% |
| !! | TAATTAATGACTGAAATTGT+TGG | + | chr7.1:5811285-5811304 | MS.gene071428:intron | 20.0% |
| !! | TGATAACATACTATATAAGA+TGG | - | chr7.1:5809659-5809678 | None:intergenic | 20.0% |
| !!! | ATCATTGATAATGTTTTAGA+AGG | - | chr7.1:5810251-5810270 | None:intergenic | 20.0% |
| !!! | ATGATATAGATTCAATTTTG+AGG | + | chr7.1:5810698-5810717 | MS.gene071428:CDS | 20.0% |
| !!! | TGTTGGTTTATTTATCATAT+AGG | + | chr7.1:5811302-5811321 | MS.gene071428:intron | 20.0% |
| !!! | TTAATAGTGTTTTCAATAGA+AGG | - | chr7.1:5811024-5811043 | None:intergenic | 20.0% |
| !!! | TTCTAAAACATTATCAATGA+TGG | + | chr7.1:5810250-5810269 | MS.gene071428:CDS | 20.0% |
| ! | AAACATGAAAGAAATGCTAT+TGG | - | chr7.1:5810535-5810554 | None:intergenic | 25.0% |
| ! | AGAATTCTCAGAAAAGAATT+TGG | + | chr7.1:5810029-5810048 | MS.gene071428:CDS | 25.0% |
| ! | GAGAAAATTGTCAAGTAATT+TGG | - | chr7.1:5810857-5810876 | None:intergenic | 25.0% |
| ! | TGAATCATATCTAAAGGAAA+CGG | + | chr7.1:5810062-5810081 | MS.gene071428:CDS | 25.0% |
| ! | TTCTTTACTACGAACAAATA+AGG | + | chr7.1:5811454-5811473 | MS.gene071428:CDS | 25.0% |
| !!! | CTTTTCTACTTTTCTGAATT+TGG | + | chr7.1:5810723-5810742 | MS.gene071428:CDS | 25.0% |
| !!! | TTGCTTTGATTTGTAAAGAA+AGG | + | chr7.1:5811255-5811274 | MS.gene071428:intron | 25.0% |
| AAACACATCGAACATTATAC+AGG | + | chr7.1:5810092-5810111 | MS.gene071428:CDS | 30.0% | |
| AAAGCAAAGCTCAATTCTTA+AGG | + | chr7.1:5810828-5810847 | MS.gene071428:CDS | 30.0% | |
| AACTTCTTGTAGAAGTGATT+TGG | + | chr7.1:5810585-5810604 | MS.gene071428:CDS | 30.0% | |
| AAGAGCTGAATCATATCTAA+AGG | + | chr7.1:5810056-5810075 | MS.gene071428:CDS | 30.0% | |
| AAGTAACAAGAATGAGAATG+AGG | + | chr7.1:5811634-5811653 | MS.gene071428:CDS | 30.0% | |
| ATAGCAAAACTACATTTGAC+AGG | - | chr7.1:5809694-5809713 | None:intergenic | 30.0% | |
| ATGCACATAATTCTCTTCAA+GGG | + | chr7.1:5810404-5810423 | MS.gene071428:intron | 30.0% | |
| ATTTACCTTGTGAAGTGAAT+AGG | - | chr7.1:5809299-5809318 | None:intergenic | 30.0% | |
| GAAGATATCAACCTTGTAAT+AGG | + | chr7.1:5810150-5810169 | MS.gene071428:intron | 30.0% | |
| GTATAATGTTCGATGTGTTT+GGG | - | chr7.1:5810092-5810111 | None:intergenic | 30.0% | |
| TATGCACATAATTCTCTTCA+AGG | + | chr7.1:5810403-5810422 | MS.gene071428:intron | 30.0% | |
| TGAATTGCAGAAGAAACAAA+GGG | + | chr7.1:5810453-5810472 | MS.gene071428:CDS | 30.0% | |
| TGATACACCGTTAGTATAAA+AGG | + | chr7.1:5809481-5809500 | MS.gene071428:intron | 30.0% | |
| TGTATAATGTTCGATGTGTT+TGG | - | chr7.1:5810093-5810112 | None:intergenic | 30.0% | |
| TTAAGAATTGAGCTTTGCTT+TGG | - | chr7.1:5810829-5810848 | None:intergenic | 30.0% | |
| TTGAATTGCAGAAGAAACAA+AGG | + | chr7.1:5810452-5810471 | MS.gene071428:CDS | 30.0% | |
| TTTCTTCGAACGAGTTATAT+CGG | + | chr7.1:5810328-5810347 | MS.gene071428:CDS | 30.0% | |
| ! | AAGAGTTGATCAGCAAAATT+TGG | + | chr7.1:5810375-5810394 | MS.gene071428:CDS | 30.0% |
| ! | AAGGAACAAGATTTTCACAA+TGG | - | chr7.1:5810125-5810144 | None:intergenic | 30.0% |
| ! | ATATCGGTTATGAAATCGAA+GGG | + | chr7.1:5810344-5810363 | MS.gene071428:CDS | 30.0% |
| ! | TATATCGGTTATGAAATCGA+AGG | + | chr7.1:5810343-5810362 | MS.gene071428:CDS | 30.0% |
| !! | AATCAATTGTTTTGCTTAGG+CGG | - | chr7.1:5811359-5811378 | None:intergenic | 30.0% |
| !! | AGGTTGATATCTTCTGATAA+AGG | - | chr7.1:5810144-5810163 | None:intergenic | 30.0% |
| !! | GACAATCAATTGTTTTGCTT+AGG | - | chr7.1:5811362-5811381 | None:intergenic | 30.0% |
| !! | TTCTCTTTTGAAAAGGAAAC+CGG | - | chr7.1:5811833-5811852 | None:intergenic | 30.0% |
| !!! | GATTTTGAGTTCTAACCTTA+AGG | - | chr7.1:5810996-5811015 | None:intergenic | 30.0% |
| ACTTGTACACCTATTTGAAC+TGG | - | chr7.1:5811435-5811454 | None:intergenic | 35.0% | |
| ATAGCATAGCAATATTCGAG+AGG | - | chr7.1:5809978-5809997 | None:intergenic | 35.0% | |
| ATAGCTGCAAAATTCTGCTA+TGG | + | chr7.1:5809934-5809953 | MS.gene071428:CDS | 35.0% | |
| ATAGGTTCATCCGAACATTA+AGG | + | chr7.1:5811320-5811339 | MS.gene071428:intron | 35.0% | |
| ATCAACCTATTCACTTCACA+AGG | + | chr7.1:5809291-5809310 | MS.gene071428:CDS | 35.0% | |
| ATTCTGCTATGGAATCAATG+TGG | + | chr7.1:5809945-5809964 | MS.gene071428:CDS | 35.0% | |
| CTTCTGCAATTCAATGTCAA+GGG | - | chr7.1:5810446-5810465 | None:intergenic | 35.0% | |
| GAGAATGAGGTTGAATGATT+TGG | + | chr7.1:5811647-5811666 | MS.gene071428:CDS | 35.0% | |
| GGACACAATCAAATCTTGTT+TGG | + | chr7.1:5811498-5811517 | MS.gene071428:CDS | 35.0% | |
| GTCAATTTCCTCAAAGATCA+GGG | + | chr7.1:5811532-5811551 | MS.gene071428:CDS | 35.0% | |
| TAGCATAGCAATATTCGAGA+GGG | - | chr7.1:5809977-5809996 | None:intergenic | 35.0% | |
| TCCTAGAGATAACTATGCAT+CGG | + | chr7.1:5811581-5811600 | MS.gene071428:CDS | 35.0% | |
| TCTTCTGCAATTCAATGTCA+AGG | - | chr7.1:5810447-5810466 | None:intergenic | 35.0% | |
| ! | ACATTCAACATGGTTTTCTC+TGG | + | chr7.1:5809354-5809373 | MS.gene071428:intron | 35.0% |
| ! | ATCTTGTTTGGTGGTATTCA+TGG | + | chr7.1:5811510-5811529 | MS.gene071428:CDS | 35.0% |
| ! | CACAATCAAATCTTGTTTGG+TGG | + | chr7.1:5811501-5811520 | MS.gene071428:CDS | 35.0% |
| ! | GCAAGTGCTATGAATTTTGA+TGG | - | chr7.1:5810910-5810929 | None:intergenic | 35.0% |
| ! | GGTTTCCTTTTCAAAAGAGA+AGG | + | chr7.1:5811832-5811851 | MS.gene071428:CDS | 35.0% |
| ! | TACTTTTCTGAATTTGGACG+AGG | + | chr7.1:5810729-5810748 | MS.gene071428:CDS | 35.0% |
| ! | TCTCTGGTTACATTCAAGTT+AGG | + | chr7.1:5809370-5809389 | MS.gene071428:intron | 35.0% |
| ! | TTTCTAGGAGTGGAAGATTT+AGG | + | chr7.1:5809830-5809849 | MS.gene071428:CDS | 35.0% |
| !! | GCATTGATTAGCCTATTACA+AGG | - | chr7.1:5810164-5810183 | None:intergenic | 35.0% |
| !! | TCTCTTTTGAAAAGGAAACC+GGG | - | chr7.1:5811832-5811851 | None:intergenic | 35.0% |
| AACCAGAAACACCCTTAGAT+TGG | + | chr7.1:5810273-5810292 | MS.gene071428:CDS | 40.0% | |
| ACCGATGCATAGTTATCTCT+AGG | - | chr7.1:5811585-5811604 | None:intergenic | 40.0% | |
| AGAAACACCCTTAGATTGGT+GGG | + | chr7.1:5810277-5810296 | MS.gene071428:CDS | 40.0% | |
| AGCTGTTGACATCTTCCTTA+AGG | + | chr7.1:5810978-5810997 | MS.gene071428:CDS | 40.0% | |
| AGTGATCTTACCATCCAAGT+AGG | + | chr7.1:5809265-5809284 | MS.gene071428:CDS | 40.0% | |
| CCTAGAAACAAGAGGAAACT+AGG | - | chr7.1:5809818-5809837 | None:intergenic | 40.0% | |
| GAAAGGCTACCAGTTCAAAT+AGG | + | chr7.1:5811423-5811442 | MS.gene071428:CDS | 40.0% | |
| GAGTATGAATTTGACAGTCC+TGG | + | chr7.1:5810799-5810818 | MS.gene071428:CDS | 40.0% | |
| GATTTGAAGAATTTGCGTGC+AGG | - | chr7.1:5811717-5811736 | None:intergenic | 40.0% | |
| GCTTACTACCAACTCAATCT+AGG | + | chr7.1:5810497-5810516 | MS.gene071428:CDS | 40.0% | |
| GGTCAATTTCCTCAAAGATC+AGG | + | chr7.1:5811531-5811550 | MS.gene071428:CDS | 40.0% | |
| GTTAGGTGGCAATGAATAGT+TGG | + | chr7.1:5809387-5809406 | MS.gene071428:intron | 40.0% | |
| TACTTGGATGGTAAGATCAC+TGG | - | chr7.1:5809266-5809285 | None:intergenic | 40.0% | |
| TCACTGGAGACATCAGATAT+TGG | - | chr7.1:5809250-5809269 | None:intergenic | 40.0% | |
| TCATCCGAACATTAAGGACT+CGG | + | chr7.1:5811326-5811345 | MS.gene071428:CDS | 40.0% | |
| TGCAAAGAGCAACTAACTTC+TGG | + | chr7.1:5810200-5810219 | MS.gene071428:intron | 40.0% | |
| TGCCACGAATACTGTGAATA+CGG | - | chr7.1:5811776-5811795 | None:intergenic | 40.0% | |
| TTCCGTATTCACAGTATTCG+TGG | + | chr7.1:5811771-5811790 | MS.gene071428:CDS | 40.0% | |
| ! | CCAAGAGCTCAAAAGCATAA+TGG | - | chr7.1:5809728-5809747 | None:intergenic | 40.0% |
| ! | CCATTATGCTTTTGAGCTCT+TGG | + | chr7.1:5809725-5809744 | MS.gene071428:intron | 40.0% |
| ! | CCTAGTTTCCTCTTGTTTCT+AGG | + | chr7.1:5809815-5809834 | MS.gene071428:intron | 40.0% |
| ! | CTGGTTACATTCAAGTTAGG+TGG | + | chr7.1:5809373-5809392 | MS.gene071428:intron | 40.0% |
| ! | CTTGTAGAAGTGATTTGGAG+AGG | + | chr7.1:5810590-5810609 | MS.gene071428:CDS | 40.0% |
| ! | GAGCTTTTCCTAGATTGAGT+TGG | - | chr7.1:5810508-5810527 | None:intergenic | 40.0% |
| ! | TGGTAGCCTTTCATTTTGTG+CGG | - | chr7.1:5811415-5811434 | None:intergenic | 40.0% |
| ! | TTATGCTTTTGAGCTCTTGG+TGG | + | chr7.1:5809728-5809747 | MS.gene071428:intron | 40.0% |
| ! | TTTTCTGAATTTGGACGAGG+TGG | + | chr7.1:5810732-5810751 | MS.gene071428:CDS | 40.0% |
| !! | AATAGGTTGATGCTCCTACT+TGG | - | chr7.1:5809282-5809301 | None:intergenic | 40.0% |
| !! | TGGCACCTTCTCTTTTGAAA+AGG | - | chr7.1:5811840-5811859 | None:intergenic | 40.0% |
| !! | TTTCCTCTTGTTTCTAGGAG+TGG | + | chr7.1:5809820-5809839 | MS.gene071428:CDS | 40.0% |
| AGAGTTGAATCAGTGTGTCG+CGG | - | chr7.1:5811233-5811252 | None:intergenic | 45.0% | |
| AGAGTTTCCCCACCAATCTA+AGG | - | chr7.1:5810288-5810307 | None:intergenic | 45.0% | |
| AGCACTTGCAGAACTACTTC+CGG | + | chr7.1:5810921-5810940 | MS.gene071428:CDS | 45.0% | |
| AGGCTTCGAAATGCGATGAA+TGG | + | chr7.1:5811474-5811493 | MS.gene071428:CDS | 45.0% | |
| ATACCACTCCCTGATCTTTG+AGG | - | chr7.1:5811543-5811562 | None:intergenic | 45.0% | |
| ATTCACAGTATTCGTGGCAG+TGG | + | chr7.1:5811777-5811796 | MS.gene071428:CDS | 45.0% | |
| ATTGTGTTGTGAGCACTCGA+AGG | - | chr7.1:5810676-5810695 | None:intergenic | 45.0% | |
| CAAAGATCAGGGAGTGGTAT+AGG | + | chr7.1:5811543-5811562 | MS.gene071428:CDS | 45.0% | |
| CAGAAACACCCTTAGATTGG+TGG | + | chr7.1:5810276-5810295 | MS.gene071428:CDS | 45.0% | |
| CTTCCACTCCTAGAAACAAG+AGG | - | chr7.1:5809826-5809845 | None:intergenic | 45.0% | |
| CTTCGAAATGCGATGAATGG+AGG | + | chr7.1:5811477-5811496 | MS.gene071428:CDS | 45.0% | |
| GAAACACCCTTAGATTGGTG+GGG | + | chr7.1:5810278-5810297 | MS.gene071428:CDS | 45.0% | |
| GAGTTTCCCCACCAATCTAA+GGG | - | chr7.1:5810287-5810306 | None:intergenic | 45.0% | |
| TCAAATGCATCTACACCACC+TGG | - | chr7.1:5809913-5809932 | None:intergenic | 45.0% | |
| TTTCCTCAAAGATCAGGGAG+TGG | + | chr7.1:5811537-5811556 | MS.gene071428:CDS | 45.0% | |
| ! | GATCGGTTTACAACTCGATC+AGG | + | chr7.1:5810615-5810634 | MS.gene071428:CDS | 45.0% |
| ! | GTAGAAGTGATTTGGAGAGG+CGG | + | chr7.1:5810593-5810612 | MS.gene071428:CDS | 45.0% |
| !! | CACCAATCTAAGGGTGTTTC+TGG | - | chr7.1:5810278-5810297 | None:intergenic | 45.0% |
| AGTATTCGTGGCAGTGGAAC+TGG | + | chr7.1:5811783-5811802 | MS.gene071428:CDS | 50.0% | |
| CGCTCCGAGTCCTTAATGTT+CGG | - | chr7.1:5811333-5811352 | None:intergenic | 50.0% | |
| CTTGTAACGCGAGCATGATC+CGG | - | chr7.1:5810943-5810962 | None:intergenic | 50.0% | |
| GAAGGTCTAGTCCACAACCA+CGG | + | chr7.1:5811805-5811824 | MS.gene071428:CDS | 50.0% | |
| GCACTCGAAGGTGAATTCGT+TGG | - | chr7.1:5810664-5810683 | None:intergenic | 50.0% | |
| GCCATGCCGCACAAAATGAA+AGG | + | chr7.1:5811406-5811425 | MS.gene071428:CDS | 50.0% | |
| TCAGGGAGTGGTATAGGAAG+TGG | + | chr7.1:5811549-5811568 | MS.gene071428:CDS | 50.0% | |
| ! | AGTGATTTGGAGAGGCGGAT+CGG | + | chr7.1:5810598-5810617 | MS.gene071428:CDS | 50.0% |
| ! | GCCTTTCATTTTGTGCGGCA+TGG | - | chr7.1:5811410-5811429 | None:intergenic | 50.0% |
| ! | GGTTGATGCTCCTACTTGGA+TGG | - | chr7.1:5809278-5809297 | None:intergenic | 50.0% |
| !! | GAGCTTTGCTTTGGAGATCC+AGG | - | chr7.1:5810820-5810839 | None:intergenic | 50.0% |
| CATGCTCGCGTTACAAGCGA+CGG | + | chr7.1:5810946-5810965 | MS.gene071428:CDS | 55.0% | |
| TGAAAAGGAAACCGGGACCG+TGG | - | chr7.1:5811825-5811844 | None:intergenic | 55.0% | |
| TGCATCTACACCACCTGGCA+CGG | - | chr7.1:5809908-5809927 | None:intergenic | 55.0% | |
| TTCGTGGCAGTGGAACTGGA+AGG | + | chr7.1:5811787-5811806 | MS.gene071428:CDS | 55.0% | |
| ACGGTCGGAAGACTTACGCG+CGG | - | chr7.1:5809889-5809908 | None:intergenic | 60.0% | |
| ATCAGTGTGTCGCGGCAGCA+AGG | - | chr7.1:5811225-5811244 | None:intergenic | 60.0% | |
| CTAGTCCACAACCACGGTCC+CGG | + | chr7.1:5811811-5811830 | MS.gene071428:CDS | 60.0% | |
| GTAAGTCTTCCGACCGTGCC+AGG | + | chr7.1:5809892-5809911 | MS.gene071428:CDS | 60.0% | |
| TCTACACCACCTGGCACGGT+CGG | - | chr7.1:5809904-5809923 | None:intergenic | 60.0% | |
| AGTCTTCCGACCGTGCCAGG+TGG | + | chr7.1:5809895-5809914 | MS.gene071428:CDS | 65.0% | |
| GGAAACCGGGACCGTGGTTG+TGG | - | chr7.1:5811819-5811838 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 5809246 | 5811872 | 5809246 | ID=MS.gene071428 |
| chr7.1 | mRNA | 5809246 | 5811872 | 5809246 | ID=MS.gene071428.t1;Parent=MS.gene071428 |
| chr7.1 | exon | 5809246 | 5809312 | 5809246 | ID=MS.gene071428.t1.exon1;Parent=MS.gene071428.t1 |
| chr7.1 | CDS | 5809246 | 5809312 | 5809246 | ID=cds.MS.gene071428.t1;Parent=MS.gene071428.t1 |
| chr7.1 | exon | 5809820 | 5810164 | 5809820 | ID=MS.gene071428.t1.exon2;Parent=MS.gene071428.t1 |
| chr7.1 | CDS | 5809820 | 5810164 | 5809820 | ID=cds.MS.gene071428.t1;Parent=MS.gene071428.t1 |
| chr7.1 | exon | 5810209 | 5810396 | 5810209 | ID=MS.gene071428.t1.exon3;Parent=MS.gene071428.t1 |
| chr7.1 | CDS | 5810209 | 5810396 | 5810209 | ID=cds.MS.gene071428.t1;Parent=MS.gene071428.t1 |
| chr7.1 | exon | 5810432 | 5810999 | 5810432 | ID=MS.gene071428.t1.exon4;Parent=MS.gene071428.t1 |
| chr7.1 | CDS | 5810432 | 5810999 | 5810432 | ID=cds.MS.gene071428.t1;Parent=MS.gene071428.t1 |
| chr7.1 | exon | 5811324 | 5811872 | 5811324 | ID=MS.gene071428.t1.exon5;Parent=MS.gene071428.t1 |
| chr7.1 | CDS | 5811324 | 5811872 | 5811324 | ID=cds.MS.gene071428.t1;Parent=MS.gene071428.t1 |
| Gene Sequence |
| Protein sequence |
