AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055847

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055847.t1 MTR_2g090155 96.238 319 11 1 1 319 1 318 0.0 627
MS.gene055847.t1 MTR_2g090155 96.226 318 11 1 1 318 1 317 0.0 626
MS.gene055847.t1 MTR_2g090155 94.654 318 11 2 1 318 1 312 0.0 607
MS.gene055847.t1 MTR_2g080040 71.484 256 73 0 57 312 110 365 3.76e-139 398
MS.gene055847.t1 MTR_1g106775 26.776 183 130 3 119 298 76 257 4.65e-15 74.3
MS.gene055847.t1 MTR_6g038540 24.865 185 133 2 127 309 56 236 7.67e-14 70.5
MS.gene055847.t1 MTR_2g090170 68.000 50 15 1 242 290 20 69 1.87e-13 65.1
MS.gene055847.t1 MTR_1g075540 26.190 168 120 2 124 289 9 174 1.57e-12 65.5
MS.gene055847.t1 MTR_1g075540 26.380 163 116 2 124 284 9 169 8.65e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055847.t1 AT4G03410 67.516 314 92 2 5 315 13 319 1.91e-158 447
MS.gene055847.t1 AT4G03410 68.065 310 89 2 5 311 13 315 4.22e-158 444
MS.gene055847.t1 AT1G52870 59.943 352 92 4 2 306 3 352 4.27e-144 411
MS.gene055847.t1 AT1G52870 53.722 309 90 5 2 263 3 305 1.16e-106 313
MS.gene055847.t1 AT4G33905 28.235 170 121 1 127 296 86 254 5.84e-16 76.6
MS.gene055847.t1 AT2G14860 26.627 169 124 0 127 295 77 245 1.86e-14 72.4
MS.gene055847.t1 AT5G43140 23.810 168 128 0 127 294 82 249 5.54e-14 71.2

Find 76 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCATCTACTTTGTGGTTT+TGG 0.095576 2.1:-11252903 MS.gene055847:CDS
CTGTGGAACAAAGGCTTCTT+TGG 0.173165 2.1:-11252275 MS.gene055847:CDS
TCTTAGTTACCTTAGCATTT+TGG 0.174879 2.1:+11251463 None:intergenic
CACAGGCAGGCTGGAAGCTT+TGG 0.250296 2.1:-11252332 MS.gene055847:intron
TTCGCCCATCTGATTACTTA+TGG 0.254055 2.1:-11252306 MS.gene055847:CDS
ATCAATGCTGCAATCGTTCT+TGG 0.258440 2.1:-11254163 MS.gene055847:CDS
GACTCTTTGGATAACATCTA+TGG 0.262207 2.1:-11252866 MS.gene055847:CDS
GCTGCAATCGTTCTTGGATT+TGG 0.262559 2.1:-11254157 MS.gene055847:CDS
TTTGTTGCGTTTCGACTCTT+TGG 0.263346 2.1:-11252879 MS.gene055847:CDS
AAACTGTGTGGTCAGCTATT+TGG 0.279478 2.1:-11252928 MS.gene055847:CDS
TGGACTGTATTGAGCTCATC+TGG 0.292811 2.1:-11252251 MS.gene055847:CDS
ATGATCAATTGTGAGCAATT+TGG 0.323543 2.1:+11254120 None:intergenic
TCACAATTGATCATGATTAC+TGG 0.351701 2.1:-11254111 MS.gene055847:CDS
TGTGGAACAAAGGCTTCTTT+GGG 0.369696 2.1:-11252274 MS.gene055847:CDS
CTTGTTGGGTTTACTCTCCA+TGG 0.385473 2.1:-11253128 MS.gene055847:CDS
CTATTTAGATCAGGTCTTGT+TGG 0.390942 2.1:-11253143 MS.gene055847:CDS
AAGAACGATTGCAGCATTGA+TGG 0.399238 2.1:+11254165 None:intergenic
AGTGGAGTTGTCTACTCAAT+TGG 0.403111 2.1:-11253314 MS.gene055847:CDS
TTGGAACACCATCTACTTTG+TGG 0.406483 2.1:-11252909 MS.gene055847:CDS
TATTTAGATCAGGTCTTGTT+GGG 0.406785 2.1:-11253142 MS.gene055847:CDS
TGGTCAAAAGCAACTTTAGC+AGG 0.412786 2.1:+11252950 None:intergenic
GAAAGGAGGTAAGGAGATGT+GGG 0.419167 2.1:+11254357 None:intergenic
AAATAGCTGACCACACAGTT+TGG 0.423298 2.1:+11252930 None:intergenic
CAGGGACAACCCACCATTGT+TGG 0.429883 2.1:+11252969 None:intergenic
AGAAAGGAGGTAAGGAGATG+TGG 0.435548 2.1:+11254356 None:intergenic
TTGTCTACTCAATTGGAGAT+TGG 0.442062 2.1:-11253307 MS.gene055847:CDS
TAGGCAATCCAATTGTGTTC+AGG 0.443916 2.1:+11253383 None:intergenic
TGCAGCATTGATGGCACGTC+CGG 0.446757 2.1:+11254174 None:intergenic
TTGGGAAGAGAAAGGAGGTA+AGG 0.452969 2.1:+11254348 None:intergenic
GGTTTCTTCTTCGCCTTCCA+AGG 0.454215 2.1:-11254233 MS.gene055847:CDS
ACCCAAAACCACAAAGTAGA+TGG 0.457211 2.1:+11252901 None:intergenic
AGAGGATCGTGAAGCAGCTT+CGG 0.458460 2.1:-11254287 MS.gene055847:CDS
CAAAATATATAGTGCTATGA+AGG 0.459856 2.1:-11253197 MS.gene055847:intron
GAGATGTGGGGCTTTGAGAA+GGG 0.469500 2.1:+11254370 None:intergenic
AATATGTGCCTGAACACAAT+TGG 0.484652 2.1:-11253391 MS.gene055847:CDS
AATTGGAGATTGGATTGCTC+AGG 0.486533 2.1:-11253297 MS.gene055847:intron
TGCTTTCAGAGATTGCTCAT+AGG 0.490513 2.1:+11253364 None:intergenic
GAGGAAGTGTCAGAAACAAC+AGG 0.491215 2.1:-11251501 MS.gene055847:CDS
TTAGCTAAAATGGCAATAAG+TGG 0.494093 2.1:-11253332 MS.gene055847:CDS
AATATGCTTCACAGGCAGGC+TGG 0.502341 2.1:-11252341 MS.gene055847:intron
GGAGATGTGGGGCTTTGAGA+AGG 0.505377 2.1:+11254369 None:intergenic
TACTTATGGTGTGGTTCCTG+TGG 0.517838 2.1:-11252292 MS.gene055847:CDS
AGCAACCTCTGTGATACCCT+TGG 0.523659 2.1:+11254216 None:intergenic
GGGGCTTTGAGAAGGGAAGG+AGG 0.527578 2.1:+11254377 None:intergenic
CGAGCGCGGCTATTTAGATC+AGG 0.532514 2.1:-11253152 MS.gene055847:CDS
CAAAGAAGCCTTTGTTCCAC+AGG 0.539036 2.1:+11252276 None:intergenic
TGTGGGGCTTTGAGAAGGGA+AGG 0.541270 2.1:+11254374 None:intergenic
GGAACAAAGGCTTCTTTGGG+TGG 0.543292 2.1:-11252271 MS.gene055847:CDS
ATAAGTTCTTACAGTGAGCA+TGG 0.556629 2.1:+11252820 None:intergenic
CCACACCATAAGTAATCAGA+TGG 0.560187 2.1:+11252301 None:intergenic
GTTTCTTCTTCGCCTTCCAA+GGG 0.562683 2.1:-11254232 MS.gene055847:CDS
GGACTGTATTGAGCTCATCT+GGG 0.562988 2.1:-11252250 MS.gene055847:CDS
TTGGTTTGGGAAGAGAAAGG+AGG 0.568112 2.1:+11254343 None:intergenic
CCATCTGATTACTTATGGTG+TGG 0.569311 2.1:-11252301 MS.gene055847:CDS
TACACCAAGCCAAAATGCTA+AGG 0.571162 2.1:-11251472 MS.gene055847:intron
AATAGTGAGAAAGAGATCCA+TGG 0.572551 2.1:+11253111 None:intergenic
ACAACCCACCATTGTTGGAA+AGG 0.581867 2.1:+11252974 None:intergenic
GGGCTTTGAGAAGGGAAGGA+GGG 0.590501 2.1:+11254378 None:intergenic
TAAGTTCTTACAGTGAGCAT+GGG 0.597156 2.1:+11252821 None:intergenic
ATCAGAATCCCGAAAATCTG+AGG 0.598586 2.1:-11251520 MS.gene055847:CDS
GGTCAAAAGCAACTTTAGCA+GGG 0.608265 2.1:+11252951 None:intergenic
TAAGTAATCAGATGGGCGAA+AGG 0.609767 2.1:+11252309 None:intergenic
CATAATCAGCTCCGTTACAG+AGG 0.615880 2.1:-11254305 MS.gene055847:CDS
TGCTTCACGATCCTCTGTAA+CGG 0.624438 2.1:+11254294 None:intergenic
AAAGGAGGTAAGGAGATGTG+GGG 0.626162 2.1:+11254358 None:intergenic
AAATAACCACCTCACACAGT+TGG 0.629043 2.1:+11253084 None:intergenic
AATAGAAGAAGCAACTGACA+TGG 0.637698 2.1:+11254405 None:intergenic
ACTGACACTGATATTCTCAC+CGG 0.639131 2.1:-11254193 MS.gene055847:CDS
GTGTGGTTCCTGTGGAACAA+AGG 0.645875 2.1:-11252284 MS.gene055847:CDS
ACCTCTGTGATACCCTTGGA+AGG 0.647729 2.1:+11254220 None:intergenic
CTATTACTACCAACTGTGTG+AGG 0.652660 2.1:-11253093 MS.gene055847:intron
CACACCATAAGTAATCAGAT+GGG 0.679652 2.1:+11252302 None:intergenic
GCGAAGAAGAAACCTCCTCG+AGG 0.711152 2.1:+11254242 None:intergenic
AAAAGACAGAAAAGTCCTCG+AGG 0.718772 2.1:-11254257 MS.gene055847:CDS
GCCTTCCAAGGGTATCACAG+AGG 0.723856 2.1:-11254221 MS.gene055847:CDS
AGACAGAAAAGTCCTCGAGG+AGG 0.726431 2.1:-11254254 MS.gene055847:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGGAAAAAAAAAAAAAA+AGG - chr2.1:11253689-11253708 MS.gene055847:intron 10.0%
!! AAAAAAAAAAAAAAAGGAGA+AGG - chr2.1:11253695-11253714 MS.gene055847:intron 15.0%
!! AATTAAATCTCATTTAAGAA+TGG - chr2.1:11253641-11253660 MS.gene055847:intron 15.0%
!! ATAAATTAAGAAACATAGTT+TGG + chr2.1:11251961-11251980 None:intergenic 15.0%
!! TTAAATGAGATTTAATTACA+AGG + chr2.1:11253638-11253657 None:intergenic 15.0%
!!! GAATTAGAATTTTTAATCAT+AGG + chr2.1:11254323-11254342 None:intergenic 15.0%
!! AAAATCTAATTAAATTGGTC+TGG + chr2.1:11253971-11253990 None:intergenic 20.0%
!! AACGCAAAATCTAATTAAAT+TGG + chr2.1:11253976-11253995 None:intergenic 20.0%
!! ATAGAAAAAGAAGCAAAATT+TGG + chr2.1:11251566-11251585 None:intergenic 20.0%
!! ATGACAGAAAAATAATACAA+CGG + chr2.1:11254192-11254211 None:intergenic 20.0%
!! ATGTATTATAGTAAAGCAAA+CGG - chr2.1:11252104-11252123 MS.gene055847:intron 20.0%
!! CAATATATTGAGAAAATTGA+TGG + chr2.1:11254364-11254383 None:intergenic 20.0%
!! GATAAAAAATCAATTCAAAC+AGG + chr2.1:11252845-11252864 None:intergenic 20.0%
!! TGTTACAAAAATAAAGCAAA+AGG - chr2.1:11253108-11253127 MS.gene055847:CDS 20.0%
!!! AAGAACTTATTTGTTTCTTA+GGG - chr2.1:11252819-11252838 MS.gene055847:intron 20.0%
!!! CAACTTTTTTTTTTGTTTCT+AGG - chr2.1:11254069-11254088 MS.gene055847:intron 20.0%
!!! CACAATTTTTTTTTTTCAGT+CGG - chr2.1:11253458-11253477 MS.gene055847:intron 20.0%
!!! TAAGAACTTATTTGTTTCTT+AGG - chr2.1:11252818-11252837 MS.gene055847:intron 20.0%
!!! TATTTTTCTGTCATGTTTTA+AGG - chr2.1:11254198-11254217 MS.gene055847:CDS 20.0%
!!! TCAATAATAAGCTAGTTTAT+TGG + chr2.1:11251637-11251656 None:intergenic 20.0%
!!! TGAATTGATTTTTTATCTAC+TGG - chr2.1:11252848-11252867 MS.gene055847:CDS 20.0%
!!! TGTATTTTCTGTATTGTAAA+TGG - chr2.1:11252151-11252170 MS.gene055847:intron 20.0%
! AAAAACCAAACCAGATTAAT+TGG - chr2.1:11253544-11253563 MS.gene055847:intron 25.0%
! AAGAAGTTGAAAACTGATTA+GGG - chr2.1:11252174-11252193 MS.gene055847:intron 25.0%
! AATATAGAGAAGAGTAGAAA+AGG - chr2.1:11253672-11253691 MS.gene055847:intron 25.0%
! AGAAAATTGATGAAAGAAAG+GGG - chr2.1:11253131-11253150 MS.gene055847:CDS 25.0%
! AGTTTGGTATAGATAGAATA+TGG + chr2.1:11251945-11251964 None:intergenic 25.0%
! CAAAATATATAGTGCTATGA+AGG - chr2.1:11252429-11252448 MS.gene055847:intron 25.0%
! GAGAAAATTGATGAAAGAAA+GGG - chr2.1:11253130-11253149 MS.gene055847:CDS 25.0%
! TAAAGCCAAATTAAGAAACA+CGG + chr2.1:11252005-11252024 None:intergenic 25.0%
! TATGAGATACTTATCCAAAA+GGG + chr2.1:11253612-11253631 None:intergenic 25.0%
! TGCTATAATCTAGTAGAAAA+AGG - chr2.1:11251763-11251782 MS.gene055847:intron 25.0%
! TGTATTATAGTAAAGCAAAC+GGG - chr2.1:11252105-11252124 MS.gene055847:intron 25.0%
!! AAATTATGAAGTGCTTATGT+TGG - chr2.1:11252376-11252395 MS.gene055847:intron 25.0%
!! AATTAGATTTTGCGTTCATT+TGG - chr2.1:11253980-11253999 MS.gene055847:intron 25.0%
!! AGTCAAACTATTTTCATACA+AGG + chr2.1:11252923-11252942 None:intergenic 25.0%
!! ATAAGTTTGAGGTACTATTA+CGG + chr2.1:11254291-11254310 None:intergenic 25.0%
!! CTTCATAGCACTATATATTT+TGG + chr2.1:11252431-11252450 None:intergenic 25.0%
!! GTAATTTTATTGTACTGTCA+AGG - chr2.1:11253047-11253066 MS.gene055847:intron 25.0%
!! TATTTTCTAATGACTCTGTT+CGG + chr2.1:11251868-11251887 None:intergenic 25.0%
!!! AAATCCAGTTTTAGCTAAAA+TGG - chr2.1:11252284-11252303 MS.gene055847:CDS 25.0%
!!! GTTATTTTACATCTTTGGTT+TGG - chr2.1:11252558-11252577 MS.gene055847:intron 25.0%
AAATGTTGAACAGAATGCAT+TGG - chr2.1:11253928-11253947 MS.gene055847:intron 30.0%
ACAATTCACACCAATTAATC+TGG + chr2.1:11253557-11253576 None:intergenic 30.0%
ATGATCAATTGTGAGCAATT+TGG + chr2.1:11251509-11251528 None:intergenic 30.0%
ATTGTTCATCCTTGAATTGT+TGG + chr2.1:11253182-11253201 None:intergenic 30.0%
GAAGAAGTTGAAAACTGATT+AGG - chr2.1:11252173-11252192 MS.gene055847:intron 30.0%
GATTAGGGTTTCATAATTCA+GGG - chr2.1:11252189-11252208 MS.gene055847:intron 30.0%
GATTGAACTTAAGCTTATAG+AGG - chr2.1:11251592-11251611 MS.gene055847:intron 30.0%
GGAGAAAATTGATGAAAGAA+AGG - chr2.1:11253129-11253148 MS.gene055847:CDS 30.0%
GTATGAGATACTTATCCAAA+AGG + chr2.1:11253613-11253632 None:intergenic 30.0%
GTATTATAGTAAAGCAAACG+GGG - chr2.1:11252106-11252125 MS.gene055847:intron 30.0%
TAGTTCAAACCAACAATTCA+AGG - chr2.1:11253170-11253189 MS.gene055847:CDS 30.0%
TCACAATTGATCATGATTAC+TGG - chr2.1:11251515-11251534 MS.gene055847:CDS 30.0%
TCTAAACAAACAATTGTCTG+TGG + chr2.1:11253230-11253249 None:intergenic 30.0%
TGATTAGGGTTTCATAATTC+AGG - chr2.1:11252188-11252207 MS.gene055847:intron 30.0%
TTAGCTAAAATGGCAATAAG+TGG - chr2.1:11252294-11252313 MS.gene055847:CDS 30.0%
TTCATTATTGTAGCCAATTG+CGG + chr2.1:11253743-11253762 None:intergenic 30.0%
TTTGACTATAATGATCTGTC+AGG + chr2.1:11252029-11252048 None:intergenic 30.0%
! ATTGAGTTGTTTATCCAAAG+AGG - chr2.1:11251903-11251922 MS.gene055847:intron 30.0%
! TCTTAGTTACCTTAGCATTT+TGG + chr2.1:11254166-11254185 None:intergenic 30.0%
!! AGGTGGTTATTTTACATCTT+TGG - chr2.1:11252553-11252572 MS.gene055847:intron 30.0%
!! CTCAGGTATGTTTTTGAATT+TGG - chr2.1:11252346-11252365 MS.gene055847:intron 30.0%
!! TATTTAGATCAGGTCTTGTT+GGG - chr2.1:11252484-11252503 MS.gene055847:intron 30.0%
!!! ATTGCCATTTTAGCTAAAAC+TGG + chr2.1:11252291-11252310 None:intergenic 30.0%
!!! GATTTTTTATCTACTGGCAT+AGG - chr2.1:11252854-11252873 MS.gene055847:CDS 30.0%
!!! TACATCTTTGGTTTGGATTT+TGG - chr2.1:11252565-11252584 MS.gene055847:intron 30.0%
!!! TTGGTTTTTTTCCCTAGTTT+GGG + chr2.1:11253533-11253552 None:intergenic 30.0%
!!! TTTGGTTTTTTTCCCTAGTT+TGG + chr2.1:11253534-11253553 None:intergenic 30.0%
AATAGAAGAAGCAACTGACA+TGG + chr2.1:11251224-11251243 None:intergenic 35.0%
AATAGTGAGAAAGAGATCCA+TGG + chr2.1:11252518-11252537 None:intergenic 35.0%
AATATGTGCCTGAACACAAT+TGG - chr2.1:11252235-11252254 MS.gene055847:CDS 35.0%
ATAAGTTCTTACAGTGAGCA+TGG + chr2.1:11252809-11252828 None:intergenic 35.0%
ATCTCATATTCACACCTCTT+TGG + chr2.1:11251920-11251939 None:intergenic 35.0%
ATTACAGCATGTGAACAAAG+AGG + chr2.1:11253032-11253051 None:intergenic 35.0%
CACACCATAAGTAATCAGAT+GGG + chr2.1:11253327-11253346 None:intergenic 35.0%
GACTCTTTGGATAACATCTA+TGG - chr2.1:11252760-11252779 MS.gene055847:intron 35.0%
GCTCGATCAAACTCAAAAAT+AGG + chr2.1:11252459-11252478 None:intergenic 35.0%
TAAGTTCTTACAGTGAGCAT+GGG + chr2.1:11252808-11252827 None:intergenic 35.0%
TCACACCAATTAATCTGGTT+TGG + chr2.1:11253552-11253571 None:intergenic 35.0%
TTCACTCTAATATGCTTCAC+AGG - chr2.1:11253277-11253296 MS.gene055847:intron 35.0%
TTGTCTACTCAATTGGAGAT+TGG - chr2.1:11252319-11252338 MS.gene055847:CDS 35.0%
! AATGTTTCGCAAAGCATCAA+GGG + chr2.1:11253890-11253909 None:intergenic 35.0%
! ACCATCTACTTTGTGGTTTT+GGG - chr2.1:11252724-11252743 MS.gene055847:intron 35.0%
! ATGAAGTGCTTATGTTGGAT+AGG - chr2.1:11252381-11252400 MS.gene055847:intron 35.0%
! CTATTTAGATCAGGTCTTGT+TGG - chr2.1:11252483-11252502 MS.gene055847:intron 35.0%
! CTCTTTTTCCTTTCCAACAA+TGG - chr2.1:11252644-11252663 MS.gene055847:intron 35.0%
! TGAAGTGCTTATGTTGGATA+GGG - chr2.1:11252382-11252401 MS.gene055847:intron 35.0%
! TTTTCCTTTCCAACAATGGT+GGG - chr2.1:11252648-11252667 MS.gene055847:intron 35.0%
! TTTTTCCTTTCCAACAATGG+TGG - chr2.1:11252647-11252666 MS.gene055847:intron 35.0%
!!! TATGATACGACGTCGTTTTT+TGG + chr2.1:11251305-11251324 None:intergenic 35.0%
!!! TGGTCTGGTTTTTTGTTCTT+CGG + chr2.1:11253956-11253975 None:intergenic 35.0%
!!! TTTTTGGTTTGGGAAGAGAA+AGG + chr2.1:11251289-11251308 None:intergenic 35.0%
AAAAGACAGAAAAGTCCTCG+AGG - chr2.1:11251369-11251388 MS.gene055847:intron 40.0%
AAACTGTGTGGTCAGCTATT+TGG - chr2.1:11252698-11252717 MS.gene055847:intron 40.0%
AAATAACCACCTCACACAGT+TGG + chr2.1:11252545-11252564 None:intergenic 40.0%
AAATAGCTGACCACACAGTT+TGG + chr2.1:11252699-11252718 None:intergenic 40.0%
AATTGGAGATTGGATTGCTC+AGG - chr2.1:11252329-11252348 MS.gene055847:CDS 40.0%
ACCCAAAACCACAAAGTAGA+TGG + chr2.1:11252728-11252747 None:intergenic 40.0%
ACTGACACTGATATTCTCAC+CGG - chr2.1:11251433-11251452 MS.gene055847:intron 40.0%
AGGGTTTCATAATTCAGGGT+TGG - chr2.1:11252193-11252212 MS.gene055847:intron 40.0%
AGTGGAGTTGTCTACTCAAT+TGG - chr2.1:11252312-11252331 MS.gene055847:CDS 40.0%
ATCAATGCTGCAATCGTTCT+TGG - chr2.1:11251463-11251482 MS.gene055847:intron 40.0%
ATCAGAATCCCGAAAATCTG+AGG - chr2.1:11254106-11254125 MS.gene055847:intron 40.0%
ATTTCGTGATCAGTTTCACG+AGG + chr2.1:11254235-11254254 None:intergenic 40.0%
CCACACCATAAGTAATCAGA+TGG + chr2.1:11253328-11253347 None:intergenic 40.0%
CCATCTGATTACTTATGGTG+TGG - chr2.1:11253325-11253344 MS.gene055847:CDS 40.0%
CGTTGCCGTGTTTCTTAATT+TGG - chr2.1:11251997-11252016 MS.gene055847:intron 40.0%
CTATTACTACCAACTGTGTG+AGG - chr2.1:11252533-11252552 MS.gene055847:intron 40.0%
GAGTTCAATAAGACCGCAAT+TGG - chr2.1:11253727-11253746 MS.gene055847:intron 40.0%
GCGAAACATTGAGAGTTTGT+CGG - chr2.1:11253900-11253919 MS.gene055847:intron 40.0%
GGTATGCAGACATAAGTTTG+AGG + chr2.1:11254302-11254321 None:intergenic 40.0%
GGTCAAAAGCAACTTTAGCA+GGG + chr2.1:11252678-11252697 None:intergenic 40.0%
TAAGTAATCAGATGGGCGAA+AGG + chr2.1:11253320-11253339 None:intergenic 40.0%
TACACCAAGCCAAAATGCTA+AGG - chr2.1:11254154-11254173 MS.gene055847:CDS 40.0%
TAGGCAATCCAATTGTGTTC+AGG + chr2.1:11252246-11252265 None:intergenic 40.0%
TCTATATGTTGTGTACTGCC+AGG - chr2.1:11254404-11254423 MS.gene055847:CDS 40.0%
TGCGTTCATTTGGTCATTGA+TGG - chr2.1:11253990-11254009 MS.gene055847:intron 40.0%
TGCTTTCAGAGATTGCTCAT+AGG + chr2.1:11252265-11252284 None:intergenic 40.0%
TGGTCAAAAGCAACTTTAGC+AGG + chr2.1:11252679-11252698 None:intergenic 40.0%
TGTGGAACAAAGGCTTCTTT+GGG - chr2.1:11253352-11253371 MS.gene055847:CDS 40.0%
TTATAGTAAAGCAAACGGGG+AGG - chr2.1:11252109-11252128 MS.gene055847:intron 40.0%
TTCGCCCATCTGATTACTTA+TGG - chr2.1:11253320-11253339 MS.gene055847:CDS 40.0%
TTGGAACACCATCTACTTTG+TGG - chr2.1:11252717-11252736 MS.gene055847:intron 40.0%
TTGTTTGCGTTGTGTAACAC+AGG - chr2.1:11252621-11252640 MS.gene055847:intron 40.0%
TTTGTTGCGTTTCGACTCTT+TGG - chr2.1:11252747-11252766 MS.gene055847:intron 40.0%
! AAGAACGATTGCAGCATTGA+TGG + chr2.1:11251464-11251483 None:intergenic 40.0%
! CAATGTTTCGCAAAGCATCA+AGG + chr2.1:11253891-11253910 None:intergenic 40.0%
! CACCATCTACTTTGTGGTTT+TGG - chr2.1:11252723-11252742 MS.gene055847:intron 40.0%
! CTGACACTTCCTCAGATTTT+CGG + chr2.1:11254118-11254137 None:intergenic 40.0%
! TGACACTTCCTCAGATTTTC+GGG + chr2.1:11254117-11254136 None:intergenic 40.0%
!! TTGCTTTTGACCAAACTGTG+TGG - chr2.1:11252686-11252705 MS.gene055847:intron 40.0%
!!! ACGACGTCGTTTTTTGGTTT+GGG + chr2.1:11251299-11251318 None:intergenic 40.0%
!!! GTTACCTTAGCATTTTGGCT+TGG + chr2.1:11254161-11254180 None:intergenic 40.0%
!!! TACGACGTCGTTTTTTGGTT+TGG + chr2.1:11251300-11251319 None:intergenic 40.0%
!!! TTTTGAGTTCTTCGAGTCGT+TGG - chr2.1:11253579-11253598 MS.gene055847:intron 40.0%
!!! TTTTTGAGTTTGATCGAGCG+CGG - chr2.1:11252460-11252479 MS.gene055847:intron 40.0%
AAACATTGAGCGGAATGCGT+TGG - chr2.1:11253506-11253525 MS.gene055847:intron 45.0%
AAAGGAGGTAAGGAGATGTG+GGG + chr2.1:11251271-11251290 None:intergenic 45.0%
AATGCGTTGGACCCAAACTA+GGG - chr2.1:11253519-11253538 MS.gene055847:intron 45.0%
ACAACCCACCATTGTTGGAA+AGG + chr2.1:11252655-11252674 None:intergenic 45.0%
AGAAAGGAGGTAAGGAGATG+TGG + chr2.1:11251273-11251292 None:intergenic 45.0%
ATGAAAGAAAGGGGTCAGAG+AGG - chr2.1:11253140-11253159 MS.gene055847:CDS 45.0%
CAAAGAAGCCTTTGTTCCAC+AGG + chr2.1:11253353-11253372 None:intergenic 45.0%
CATAATCAGCTCCGTTACAG+AGG - chr2.1:11251321-11251340 MS.gene055847:intron 45.0%
CTCTAATATGCTTCACAGGC+AGG - chr2.1:11253281-11253300 MS.gene055847:intron 45.0%
CTGTGGAACAAAGGCTTCTT+TGG - chr2.1:11253351-11253370 MS.gene055847:CDS 45.0%
CTTGTTGGGTTTACTCTCCA+TGG - chr2.1:11252498-11252517 MS.gene055847:intron 45.0%
GAAAGGAGGTAAGGAGATGT+GGG + chr2.1:11251272-11251291 None:intergenic 45.0%
GCTGCAATCGTTCTTGGATT+TGG - chr2.1:11251469-11251488 MS.gene055847:intron 45.0%
GGACTGTATTGAGCTCATCT+GGG - chr2.1:11253376-11253395 MS.gene055847:CDS 45.0%
GTTTCTTCTTCGCCTTCCAA+GGG - chr2.1:11251394-11251413 MS.gene055847:intron 45.0%
TACTTATGGTGTGGTTCCTG+TGG - chr2.1:11253334-11253353 MS.gene055847:CDS 45.0%
TCCGCTCAATGTTTCAGTGT+GGG + chr2.1:11253500-11253519 None:intergenic 45.0%
TGCTTCACGATCCTCTGTAA+CGG + chr2.1:11251335-11251354 None:intergenic 45.0%
TGGACTGTATTGAGCTCATC+TGG - chr2.1:11253375-11253394 MS.gene055847:CDS 45.0%
TTACTACCAACTGTGTGAGG+TGG - chr2.1:11252536-11252555 MS.gene055847:intron 45.0%
TTCCGCTCAATGTTTCAGTG+TGG + chr2.1:11253501-11253520 None:intergenic 45.0%
TTGGGAAGAGAAAGGAGGTA+AGG + chr2.1:11251281-11251300 None:intergenic 45.0%
! AAAGCATCAAGGGTTTGAGG+GGG + chr2.1:11253880-11253899 None:intergenic 45.0%
! CAAAGCATCAAGGGTTTGAG+GGG + chr2.1:11253881-11253900 None:intergenic 45.0%
! GCAAAGCATCAAGGGTTTGA+GGG + chr2.1:11253882-11253901 None:intergenic 45.0%
!! GAGGAAGTGTCAGAAACAAC+AGG - chr2.1:11254125-11254144 MS.gene055847:CDS 45.0%
!! TTGGTTTGGGAAGAGAAAGG+AGG + chr2.1:11251286-11251305 None:intergenic 45.0%
!!! TCGTTGGTTCAATGCCCTTT+TGG - chr2.1:11253595-11253614 MS.gene055847:intron 45.0%
AATATGCTTCACAGGCAGGC+TGG - chr2.1:11253285-11253304 MS.gene055847:intron 50.0%
ACCTCTGTGATACCCTTGGA+AGG + chr2.1:11251409-11251428 None:intergenic 50.0%
AGACAGAAAAGTCCTCGAGG+AGG - chr2.1:11251372-11251391 MS.gene055847:intron 50.0%
AGAGGATCGTGAAGCAGCTT+CGG - chr2.1:11251339-11251358 MS.gene055847:intron 50.0%
AGCAACCTCTGTGATACCCT+TGG + chr2.1:11251413-11251432 None:intergenic 50.0%
AGTAAAGCAAACGGGGAGGA+TGG - chr2.1:11252113-11252132 MS.gene055847:intron 50.0%
GAATGCGTTGGACCCAAACT+AGG - chr2.1:11253518-11253537 MS.gene055847:intron 50.0%
GCCCACACTGAAACATTGAG+CGG - chr2.1:11253496-11253515 MS.gene055847:intron 50.0%
GGAACAAAGGCTTCTTTGGG+TGG - chr2.1:11253355-11253374 MS.gene055847:CDS 50.0%
GGTTTCTTCTTCGCCTTCCA+AGG - chr2.1:11251393-11251412 MS.gene055847:intron 50.0%
GTGTGGTTCCTGTGGAACAA+AGG - chr2.1:11253342-11253361 MS.gene055847:CDS 50.0%
TAGGCACTTGCGAGACTCTT+TGG - chr2.1:11252873-11252892 MS.gene055847:CDS 50.0%
TCAGTTTCACGAGGACTCTC+TGG + chr2.1:11254226-11254245 None:intergenic 50.0%
! CGCAAAGCATCAAGGGTTTG+AGG + chr2.1:11253883-11253902 None:intergenic 50.0%
!! GAGATGTGGGGCTTTGAGAA+GGG + chr2.1:11251259-11251278 None:intergenic 50.0%
CAGGGACAACCCACCATTGT+TGG + chr2.1:11252660-11252679 None:intergenic 55.0%
CGAGCGCGGCTATTTAGATC+AGG - chr2.1:11252474-11252493 MS.gene055847:intron 55.0%
GCGAAGAAGAAACCTCCTCG+AGG + chr2.1:11251387-11251406 None:intergenic 55.0%
!! GCCTTCCAAGGGTATCACAG+AGG - chr2.1:11251405-11251424 MS.gene055847:intron 55.0%
!! GGAGATGTGGGGCTTTGAGA+AGG + chr2.1:11251260-11251279 None:intergenic 55.0%
!! GGGCTTTGAGAAGGGAAGGA+GGG + chr2.1:11251251-11251270 None:intergenic 55.0%
!! TGCAGCATTGATGGCACGTC+CGG + chr2.1:11251455-11251474 None:intergenic 55.0%
!! TGTGGGGCTTTGAGAAGGGA+AGG + chr2.1:11251255-11251274 None:intergenic 55.0%
CACAGGCAGGCTGGAAGCTT+TGG - chr2.1:11253294-11253313 MS.gene055847:intron 60.0%
!! GGGGCTTTGAGAAGGGAAGG+AGG + chr2.1:11251252-11251271 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 11251217 11254431 11251217 ID=MS.gene055847
chr2.1 mRNA 11251217 11254431 11251217 ID=MS.gene055847.t1;Parent=MS.gene055847
chr2.1 exon 11254108 11254431 11254108 ID=MS.gene055847.t1.exon1;Parent=MS.gene055847.t1
chr2.1 CDS 11254108 11254431 11254108 ID=cds.MS.gene055847.t1;Parent=MS.gene055847.t1
chr2.1 exon 11253298 11253438 11253298 ID=MS.gene055847.t1.exon2;Parent=MS.gene055847.t1
chr2.1 CDS 11253298 11253438 11253298 ID=cds.MS.gene055847.t1;Parent=MS.gene055847.t1
chr2.1 exon 11253094 11253207 11253094 ID=MS.gene055847.t1.exon3;Parent=MS.gene055847.t1
chr2.1 CDS 11253094 11253207 11253094 ID=cds.MS.gene055847.t1;Parent=MS.gene055847.t1
chr2.1 exon 11252832 11253005 11252832 ID=MS.gene055847.t1.exon4;Parent=MS.gene055847.t1
chr2.1 CDS 11252832 11253005 11252832 ID=cds.MS.gene055847.t1;Parent=MS.gene055847.t1
chr2.1 exon 11252234 11252349 11252234 ID=MS.gene055847.t1.exon5;Parent=MS.gene055847.t1
chr2.1 CDS 11252234 11252349 11252234 ID=cds.MS.gene055847.t1;Parent=MS.gene055847.t1
chr2.1 exon 11251473 11251557 11251473 ID=MS.gene055847.t1.exon6;Parent=MS.gene055847.t1
chr2.1 CDS 11251473 11251557 11251473 ID=cds.MS.gene055847.t1;Parent=MS.gene055847.t1
chr2.1 exon 11251217 11251222 11251217 ID=MS.gene055847.t1.exon7;Parent=MS.gene055847.t1
chr2.1 CDS 11251217 11251222 11251217 ID=cds.MS.gene055847.t1;Parent=MS.gene055847.t1
Gene Sequence

>MS.gene055847

ATGGCCATGTCAGTTGCTTCTTCTATTTGCACCCTCCTTCCCTTCTCAAAGCCCCACATCTCCTTACCTCCTTTCTCTTCCCAAACCAAAAAACGACGTCGTATCATAATCAGCTCCGTTACAGAGGATCGTGAAGCAGCTTCGGTTGTATCAAAAGACAGAAAAGTCCTCGAGGAGGTTTCTTCTTCGCCTTCCAAGGGTATCACAGAGGTTGCTACTGACACTGATATTCTCACCGGACGTGCCATCAATGCTGCAATCGTTCTTGGATTTGGAGCTTTTGCTGTCACCAAATTGCTCACAATTGATCATGATTACTGGCATGTTAGTTTCTTCTATTTTATATCCAAATTTTGCTTCTTTTTCTATTTTAGTGATTGAACTTAAGCTTATAGAGGATCAATTTATAGCGAATAACCAATAAACTAGCTTATTATTGACAACAGATAAGCTAGCTGATTGAACTTGTAGCGTTCGATAAAATTAACGATTGAACTAGATGATAAATCTGAAGTTATAACTTGCTTGAAGTAGCTTATCAAAAACTGCTATAATCTAGTAGAAAAAGGATATAGCTTGTGAGAAAAAATTGACAAGTTTTGATTAGTCATACGAACTTATAAGCTATAAGTTCAAAATTTTGTCTTTCCGAACAGAGTCATTAGAAAATAGTTCATATGCGCTTAATTGAGTTGTTTATCCAAAGAGGTGTGAATATGAGATGACCATATTCTATCTATACCAAACTATGTTTCTTAATTTATTTCTTTACTTTGTGTTCGTTGCCGTGTTTCTTAATTTGGCTTTAACCTGACAGATCATTATAGTCAAATGTGATACTTCAAGATTTTCAATTAGTTGATCGCAAAAGTCACTCGCTTTTTACAATGTATTATAGTAAAGCAAACGGGGAGGATGGTTGAATTGATTCTAGTGTATTTTCTGTATTGTAAATGGAAGAAGTTGAAAACTGATTAGGGTTTCATAATTCAGGGTTGGACACTTTATGAGATACTGAAATATGTGCCTGAACACAATTGGATTGCCTATGAGCAATCTCTGAAAGCAAATCCAGTTTTAGCTAAAATGGCAATAAGTGGAGTTGTCTACTCAATTGGAGATTGGATTGCTCAGGTATGTTTTTGAATTTGGCTTGAAAAAATTATGAAGTGCTTATGTTGGATAGGGTTTTTCGTATTAACTTCTTCTTACCAAAATATATAGTGCTATGAAGGAAAGCCTATTTTTGAGTTTGATCGAGCGCGGCTATTTAGATCAGGTCTTGTTGGGTTTACTCTCCATGGATCTCTTTCTCACTATTACTACCAACTGTGTGAGGTGGTTATTTTACATCTTTGGTTTGGATTTTGGAACAATTAGTTTGTATTATGTCAATTGCTAAAATTGTTTGCGTTGTGTAACACAGGCTCTTTTTCCTTTCCAACAATGGTGGGTTGTCCCTGCTAAAGTTGCTTTTGACCAAACTGTGTGGTCAGCTATTTGGAACACCATCTACTTTGTGGTTTTGGGTTTGTTGCGTTTCGACTCTTTGGATAACATCTATGGTGAACTCAAGTCAACATTTTTGCCCATGCTCACTGTAAGAACTTATTTGTTTCTTAGGGCCTGTTTGAATTGATTTTTTATCTACTGGCATAGGCACTTGCGAGACTCTTTGGAAGAGCTTATTAAAAGAATTTATACCTTGTATGAAAATAGTTTGACTTGATTTTATCTTTTGTTATAGAAATAGCTTATACATAAACACTTATATGATAAGTGCTTAATTAAGACGTTATCTGCAATAACTCGCCTCTTTGTTCACATGCTGTAATTTTATTGTACTGTCAAGGAGAAACGTTCAAAATCGCGTTTCAAATAATCGAAATCATGTTACAAAAATAAAGCAAAAGGAGAAAATTGATGAAAGAAAGGGGTCAGAGAGGAATTCTATAGTTCAAACCAACAATTCAAGGATGAACAATCGAATGATGAATAAATGAACTGTATCCACAGACAATTGTTTGTTTAGAAATTCAGTTCTGTTTTGATGACTAAATTTCACTCTAATATGCTTCACAGGCAGGCTGGAAGCTTTGGCCTTTCGCCCATCTGATTACTTATGGTGTGGTTCCTGTGGAACAAAGGCTTCTTTGGGTGGACTGTATTGAGCTCATCTGGGTCACAATACTTTCAACGTAAGTTCTCTATAATTATTTGTCATATCATACTGAATTATTACACAATTTTTTTTTTTCAGTCGGCAGAAGTGTTTTCATGCCCACACTGAAACATTGAGCGGAATGCGTTGGACCCAAACTAGGGAAAAAAACCAAACCAGATTAATTGGTGTGAATTGTTTTTTTGAGTTCTTCGAGTCGTTGGTTCAATGCCCTTTTGGATAAGTATCTCATACTTCCTTGTAATTAAATCTCATTTAAGAATGGATGTTAATAATATAGAGAAGAGTAGAAAAGGAAAAAAAAAAAAAAAGGAGAAGGAGTTTGCTAGAGTTCAATAAGACCGCAATTGGCTACAATAATGAATACACAATACATAACAATAGAGTAAGTATATACAGTATACACAATAAGCAAAAAATGAAACAACACTTAATTAGAGTAAATAAATAAAGAAATAAAAGTGTTATTTTCTTACATCCCCCTCAAACCCTTGATGCTTTGCGAAACATTGAGAGTTTGTCGGTTCAAAAATGTTGAACAGAATGCATTGGATCCGAAGAACAAAAAACCAGACCAATTTAATTAGATTTTGCGTTCATTTGGTCATTGATGGCATAAATTTATGATACATATAACTATTAGAAACATGAAATAAGATTTTATTTCATACAACTTTTTTTTTTGTTTCTAGGTATTCGAATGAGAAATCAGAATCCCGAAAATCTGAGGAAGTGTCAGAAACAACAGGATCATCTACACCAAGCCAAAATGCTAAGGTAACTAAGAAGACCGTTGTATTATTTTTCTGTCATGTTTTAAGGTTCCAGAGAGTCCTCGTGAAACTGATCACGAAATGAATTAGAGAAAACACTGCTGCACACATTCTAACCGTAATAGTACCTCAAACTTATGTCTGCATACCTATGATTAAAAATTCTAATTCTCTAGTTAGACGAGTCTTCCATCAATTTTCTCAATATATTGAGCTTATGATTTCTTTTTTCTCTATATGTTGTGTACTGCCAGGAATAA
Protein sequence

>MS.gene055847.t1

MAMSVASSICTLLPFSKPHISLPPFSSQTKKRRRIIISSVTEDREAASVVSKDRKVLEEVSSSPSKGITEVATDTDILTGRAINAAIVLGFGAFAVTKLLTIDHDYWHGWTLYEILKYVPEHNWIAYEQSLKANPVLAKMAISGVVYSIGDWIAQCYEGKPIFEFDRARLFRSGLVGFTLHGSLSHYYYQLCEALFPFQQWWVVPAKVAFDQTVWSAIWNTIYFVVLGLLRFDSLDNIYGELKSTFLPMLTAGWKLWPFAHLITYGVVPVEQRLLWVDCIELIWVTILSTYSNEKSESRKSEEVSETTGSSTPSQNAKE