Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25903.t1 | XP_013461067.1 | 100 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 4.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25903.t1 | O82528 | 88.2 | 204 | 24 | 0 | 1 | 204 | 1 | 204 | 2.2e-100 | 366.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25903.t1 | I3T9M3 | 100.0 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 3.1e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene25903 | 0.853534 | 2.24E-61 | -1.69E-46 |
| MS.gene049361 | MS.gene25903 | 0.852776 | 3.70E-61 | -1.69E-46 |
| MS.gene049387 | MS.gene25903 | 0.855487 | 6.10E-62 | -1.69E-46 |
| MS.gene050134 | MS.gene25903 | 0.914295 | 2.27E-84 | -1.69E-46 |
| MS.gene050791 | MS.gene25903 | 0.85675 | 2.61E-62 | -1.69E-46 |
| MS.gene050912 | MS.gene25903 | 0.825534 | 4.45E-54 | -1.69E-46 |
| MS.gene051925 | MS.gene25903 | 0.852297 | 5.06E-61 | -1.69E-46 |
| MS.gene051927 | MS.gene25903 | 0.821435 | 4.04E-53 | -1.69E-46 |
| MS.gene051984 | MS.gene25903 | 0.859478 | 4.02E-63 | -1.69E-46 |
| MS.gene052209 | MS.gene25903 | 0.851408 | 9.05E-61 | -1.69E-46 |
| MS.gene052664 | MS.gene25903 | 0.908187 | 2.25E-81 | -1.69E-46 |
| MS.gene052666 | MS.gene25903 | 0.889872 | 1.64E-73 | -1.69E-46 |
| MS.gene053224 | MS.gene25903 | 0.904924 | 7.38E-80 | -1.69E-46 |
| MS.gene054624 | MS.gene25903 | 0.847447 | 1.15E-59 | -1.69E-46 |
| MS.gene054662 | MS.gene25903 | 0.810681 | 1.02E-50 | -1.69E-46 |
| MS.gene055232 | MS.gene25903 | 0.806345 | 8.61E-50 | -1.69E-46 |
| MS.gene055847 | MS.gene25903 | -0.804618 | 1.98E-49 | -1.69E-46 |
| MS.gene057272 | MS.gene25903 | 0.895978 | 5.73E-76 | -1.69E-46 |
| MS.gene057321 | MS.gene25903 | 0.851829 | 6.88E-61 | -1.69E-46 |
| MS.gene057641 | MS.gene25903 | 0.851296 | 9.73E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene25903 | 0.895295 | 1.10E-75 | -1.69E-46 |
| MS.gene058994 | MS.gene25903 | 0.803306 | 3.71E-49 | -1.69E-46 |
| MS.gene059340 | MS.gene25903 | 0.878203 | 3.40E-69 | -1.69E-46 |
| MS.gene060483 | MS.gene25903 | 0.90339 | 3.65E-79 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61498 | MS.gene25903 | PPI |
| MS.gene01456 | MS.gene25903 | PPI |
| MS.gene01057 | MS.gene25903 | PPI |
| MS.gene045843 | MS.gene25903 | PPI |
| MS.gene022249 | MS.gene25903 | PPI |
| MS.gene047337 | MS.gene25903 | PPI |
| MS.gene62426 | MS.gene25903 | PPI |
| MS.gene70579 | MS.gene25903 | PPI |
| MS.gene067362 | MS.gene25903 | PPI |
| MS.gene036800 | MS.gene25903 | PPI |
| MS.gene59047 | MS.gene25903 | PPI |
| MS.gene074400 | MS.gene25903 | PPI |
| MS.gene002484 | MS.gene25903 | PPI |
| MS.gene038837 | MS.gene25903 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25903.t1 | MTR_3g078653 | 100.000 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 8.57e-150 | 414 |
| MS.gene25903.t1 | MTR_2g014220 | 99.510 | 204 | 1 | 0 | 1 | 204 | 49 | 252 | 2.38e-149 | 415 |
| MS.gene25903.t1 | MTR_7g026915 | 94.915 | 59 | 3 | 0 | 1 | 59 | 1 | 59 | 3.81e-33 | 125 |
| MS.gene25903.t1 | MTR_7g026915 | 87.500 | 64 | 8 | 0 | 1 | 64 | 1 | 64 | 1.52e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25903.t1 | AT4G16720 | 88.235 | 204 | 24 | 0 | 1 | 204 | 1 | 204 | 8.64e-122 | 343 |
| MS.gene25903.t1 | AT4G17390 | 87.745 | 204 | 25 | 0 | 1 | 204 | 1 | 204 | 1.80e-121 | 342 |
Find 83 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATATTTCGAGGTCATTT+TGG | 0.206004 | 3.2:-69461251 | MS.gene25903:CDS |
| GTTTCCAAGGGTATTGTTTA+TGG | 0.211521 | 3.2:-69461501 | MS.gene25903:CDS |
| GACGGAAGCTTGGTGGTCTT+AGG | 0.284899 | 3.2:-69461404 | MS.gene25903:CDS |
| TCCTGACAAGGCTCGCCGTT+TGG | 0.286229 | 3.2:-69462392 | MS.gene25903:CDS |
| TTGGTGAGCCAGTTGATTCT+TGG | 0.307622 | 3.2:+69461196 | None:intergenic |
| CCTGACAAGGCTCGCCGTTT+GGG | 0.317524 | 3.2:-69462391 | MS.gene25903:CDS |
| AGTTCCCTGTGCTTGTGGAC+TGG | 0.331698 | 3.2:+69461172 | None:intergenic |
| GTTCCCTGTGCTTGTGGACT+GGG | 0.349720 | 3.2:+69461173 | None:intergenic |
| TTAGGGTTCTCAATTCCTAC+TGG | 0.365103 | 3.2:-69461386 | MS.gene25903:CDS |
| TGGTGAGCCAGTTGATTCTT+GGG | 0.374689 | 3.2:+69461197 | None:intergenic |
| TAAACAATACCCTTGGAAAC+TGG | 0.377401 | 3.2:+69461504 | None:intergenic |
| GTCCATCCCGCAGGGCAAAC+TGG | 0.385467 | 3.2:-69461078 | MS.gene25903:CDS |
| TCTCTTCCAGTTTGCCCTGC+GGG | 0.386069 | 3.2:+69461072 | None:intergenic |
| TGCGGGATGGACGGGCTTTG+TGG | 0.407354 | 3.2:+69461089 | None:intergenic |
| TCATGCAACGTGTGAGGTGC+TGG | 0.410863 | 3.2:-69462462 | MS.gene25903:CDS |
| TGCTCCTTTGAAACTTGAGT+TGG | 0.414015 | 3.2:+69461454 | None:intergenic |
| AACGGTAACGGCGGAGAGAC+AGG | 0.416120 | 3.2:+69461041 | None:intergenic |
| GTTTGCCCTGCGGGATGGAC+GGG | 0.417367 | 3.2:+69461081 | None:intergenic |
| TAGCTCAGAAACATACTTGT+AGG | 0.420670 | 3.2:+69462516 | None:intergenic |
| TGGGTAACTCCCTGGTTGGT+GGG | 0.428376 | 3.2:+69461474 | None:intergenic |
| CCCAAACGGCGAGCCTTGTC+AGG | 0.428600 | 3.2:+69462391 | None:intergenic |
| GGCTCGCCGTTTGGGTTACA+AGG | 0.429123 | 3.2:-69462383 | MS.gene25903:CDS |
| AGTTTGCCCTGCGGGATGGA+CGG | 0.430262 | 3.2:+69461080 | None:intergenic |
| TTCAGGGATATGTTGTGTAC+CGG | 0.437893 | 3.2:-69461557 | MS.gene25903:intron |
| AATGACCTCGAAATATTTGA+AGG | 0.445755 | 3.2:+69461255 | None:intergenic |
| CTTCGTGGTCTCACTTCTGC+TGG | 0.448020 | 3.2:-69461151 | MS.gene25903:CDS |
| CTTGTCAGGACGAGTGGGTC+TGG | 0.448800 | 3.2:+69462405 | None:intergenic |
| ACGGAAGCTTGGTGGTCTTA+GGG | 0.449544 | 3.2:-69461403 | MS.gene25903:CDS |
| TTCCAGTTTGCCCTGCGGGA+TGG | 0.461159 | 3.2:+69461076 | None:intergenic |
| CACGAAGTTCCCTGTGCTTG+TGG | 0.463265 | 3.2:+69461167 | None:intergenic |
| ATGGACGGGCTTTGTGGTAA+CGG | 0.472327 | 3.2:+69461095 | None:intergenic |
| TTGGGTAACTCCCTGGTTGG+TGG | 0.476932 | 3.2:+69461473 | None:intergenic |
| GCTCCTTTGAAACTTGAGTT+GGG | 0.480540 | 3.2:+69461455 | None:intergenic |
| TCTGGTGAGACGAACGATAG+AGG | 0.481896 | 3.2:+69462423 | None:intergenic |
| TTCTACCTTCAAATATTTCG+AGG | 0.494616 | 3.2:-69461260 | MS.gene25903:CDS |
| CCAACCCAGTCCACAAGCAC+AGG | 0.501162 | 3.2:-69461177 | MS.gene25903:CDS |
| CGTGCTGGACGGAAGCTTGG+TGG | 0.501934 | 3.2:-69461411 | MS.gene25903:CDS |
| TACGCAGAGGTGGTAGGAAG+AGG | 0.502186 | 3.2:-69461527 | MS.gene25903:CDS |
| TTTGGGTTACAAGGCTAAGC+AGG | 0.502645 | 3.2:-69462374 | MS.gene25903:intron |
| ACAAAGCCCGTCCATCCCGC+AGG | 0.505243 | 3.2:-69461087 | MS.gene25903:CDS |
| ACAAGTATGTTTCTGAGCTA+TGG | 0.512701 | 3.2:-69462513 | MS.gene25903:CDS |
| GATATGTTGTGTACCGGGTG+AGG | 0.521531 | 3.2:-69461551 | MS.gene25903:CDS |
| GAGCGTGCTGGACGGAAGCT+TGG | 0.530059 | 3.2:-69461414 | MS.gene25903:CDS |
| CTTACCATAAACAATACCCT+TGG | 0.531543 | 3.2:+69461497 | None:intergenic |
| CCTGTGCTTGTGGACTGGGT+TGG | 0.541785 | 3.2:+69461177 | None:intergenic |
| TAGGAAGAGGCCAGTTTCCA+AGG | 0.541808 | 3.2:-69461514 | MS.gene25903:CDS |
| GCGAGCCTTGTCAGGACGAG+TGG | 0.547527 | 3.2:+69462399 | None:intergenic |
| GAAATGACCCAAGAATCAAC+TGG | 0.550461 | 3.2:-69461204 | MS.gene25903:CDS |
| TTATGGTAAGCCCACCAACC+AGG | 0.550892 | 3.2:-69461484 | MS.gene25903:CDS |
| TGAGGGTACGCAGAGGTGGT+AGG | 0.551486 | 3.2:-69461533 | MS.gene25903:CDS |
| ACTTGAGTTGGGTAACTCCC+TGG | 0.551881 | 3.2:+69461466 | None:intergenic |
| TCCGTCGCTGAAGAGCGTGC+TGG | 0.554588 | 3.2:-69461426 | MS.gene25903:CDS |
| AACAGAGGTTTGAGTGGCAA+GGG | 0.555360 | 3.2:-69461121 | MS.gene25903:CDS |
| TAGGGTTCTCAATTCCTACT+GGG | 0.560974 | 3.2:-69461385 | MS.gene25903:CDS |
| CAATTCCTACTGGGTCAATG+AGG | 0.563819 | 3.2:-69461376 | MS.gene25903:intron |
| CACCTCTGCGTACCCTCACC+CGG | 0.571516 | 3.2:+69461538 | None:intergenic |
| TCAGGGATATGTTGTGTACC+GGG | 0.573183 | 3.2:-69461556 | MS.gene25903:intron |
| TTACCCAACTCAAGTTTCAA+AGG | 0.573525 | 3.2:-69461458 | MS.gene25903:CDS |
| TCCAGCACGCTCTTCAGCGA+CGG | 0.585150 | 3.2:+69461425 | None:intergenic |
| AAACAGAGGTTTGAGTGGCA+AGG | 0.585660 | 3.2:-69461122 | MS.gene25903:CDS |
| TTCTCTTCCAGTTTGCCCTG+CGG | 0.587901 | 3.2:+69461071 | None:intergenic |
| TCGCTGAAGAGCGTGCTGGA+CGG | 0.595062 | 3.2:-69461422 | MS.gene25903:CDS |
| CATGCAACGTGTGAGGTGCT+GGG | 0.596458 | 3.2:-69462461 | MS.gene25903:CDS |
| TCAAGTTTCAAAGGAGCAAG+AGG | 0.596680 | 3.2:-69461449 | MS.gene25903:CDS |
| CACAAGCACAGGGAACTTCG+TGG | 0.600876 | 3.2:-69461166 | MS.gene25903:CDS |
| CAGACCCACTCGTCCTGACA+AGG | 0.605906 | 3.2:-69462404 | MS.gene25903:CDS |
| TATGGTAAGCCCACCAACCA+GGG | 0.605988 | 3.2:-69461483 | MS.gene25903:CDS |
| CGGGTGAGGGTACGCAGAGG+TGG | 0.609715 | 3.2:-69461537 | MS.gene25903:CDS |
| ATATGTTGTGTACCGGGTGA+GGG | 0.614513 | 3.2:-69461550 | MS.gene25903:CDS |
| TGCAGTAAAATCAACGGTAA+CGG | 0.618711 | 3.2:+69461029 | None:intergenic |
| CAAAGCCCGTCCATCCCGCA+GGG | 0.619537 | 3.2:-69461086 | MS.gene25903:CDS |
| GAGTTGGGTAACTCCCTGGT+TGG | 0.627619 | 3.2:+69461470 | None:intergenic |
| AGGAAGAGGCCAGTTTCCAA+GGG | 0.629174 | 3.2:-69461513 | MS.gene25903:CDS |
| GCTTAGCCTTGTAACCCAAA+CGG | 0.629228 | 3.2:+69462377 | None:intergenic |
| CAACCCAGTCCACAAGCACA+GGG | 0.632139 | 3.2:-69461176 | MS.gene25903:CDS |
| AAAGAAAACAGAGGTTTGAG+TGG | 0.633735 | 3.2:-69461127 | MS.gene25903:CDS |
| ACGGTAACGGCGGAGAGACA+GGG | 0.637745 | 3.2:+69461042 | None:intergenic |
| CGAGCCTTGTCAGGACGAGT+GGG | 0.641692 | 3.2:+69462400 | None:intergenic |
| ACAAACCTCATTGACCCAGT+AGG | 0.645250 | 3.2:+69461371 | None:intergenic |
| TCTGCTGGAAAAGAAAACAG+AGG | 0.661682 | 3.2:-69461136 | MS.gene25903:CDS |
| AGTAAAATCAACGGTAACGG+CGG | 0.665793 | 3.2:+69461032 | None:intergenic |
| TACCGGGTGAGGGTACGCAG+AGG | 0.674254 | 3.2:-69461540 | MS.gene25903:CDS |
| TGCGATTCATGCAACGTGTG+AGG | 0.718067 | 3.2:-69462468 | MS.gene25903:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAGTCATTTTTTTAAAA+TGG | - | chr3.2:69461522-69461541 | MS.gene25903:CDS | 10.0% |
| !!! | ATAAGTCATTTTTTTAAAAT+GGG | - | chr3.2:69461523-69461542 | MS.gene25903:CDS | 10.0% |
| !! | AAATTTCATATTCATATAGA+AGG | - | chr3.2:69461698-69461717 | MS.gene25903:intron | 15.0% |
| !!! | GTTTGTATTTTTATTTTTAC+TGG | - | chr3.2:69461873-69461892 | MS.gene25903:intron | 15.0% |
| !! | ATCAGACATTAACAAAAATT+TGG | + | chr3.2:69461803-69461822 | None:intergenic | 20.0% |
| !! | TACTAAGAATTAATCACTTA+GGG | - | chr3.2:69461416-69461435 | MS.gene25903:CDS | 20.0% |
| !! | TTACTAAGAATTAATCACTT+AGG | - | chr3.2:69461415-69461434 | MS.gene25903:CDS | 20.0% |
| !!! | TATTGTTGTTATTTGTGAAT+AGG | - | chr3.2:69461118-69461137 | MS.gene25903:CDS | 20.0% |
| !!! | TTTTTAAAATGGGTTTCAAA+TGG | - | chr3.2:69461533-69461552 | MS.gene25903:CDS | 20.0% |
| !! | ACAAAAAATTGATAGTCTCT+AGG | + | chr3.2:69461767-69461786 | None:intergenic | 25.0% |
| !!! | GTAATTGACAAATTTTAGCA+AGG | + | chr3.2:69461994-69462013 | None:intergenic | 25.0% |
| !!! | TAGAGACTATCAATTTTTTG+TGG | - | chr3.2:69461766-69461785 | MS.gene25903:intron | 25.0% |
| AATGACCTCGAAATATTTGA+AGG | + | chr3.2:69462407-69462426 | None:intergenic | 30.0% | |
| ATCATACAGAAACAAAAGCA+TGG | + | chr3.2:69461073-69461092 | None:intergenic | 30.0% | |
| CATGTTTACAAAATGAAGCA+AGG | + | chr3.2:69462055-69462074 | None:intergenic | 30.0% | |
| GAACTAGTTGAAGTTCAATT+TGG | - | chr3.2:69462321-69462340 | MS.gene25903:intron | 30.0% | |
| GTAATTGTCACATCATTTCA+GGG | - | chr3.2:69462086-69462105 | MS.gene25903:intron | 30.0% | |
| GTAGCACAAAACAAAACAAT+GGG | + | chr3.2:69462375-69462394 | None:intergenic | 30.0% | |
| TAGCACAAAACAAAACAATG+GGG | + | chr3.2:69462374-69462393 | None:intergenic | 30.0% | |
| TGTAATTGTCACATCATTTC+AGG | - | chr3.2:69462085-69462104 | MS.gene25903:intron | 30.0% | |
| TGTAGCACAAAACAAAACAA+TGG | + | chr3.2:69462376-69462395 | None:intergenic | 30.0% | |
| TTCTACCTTCAAATATTTCG+AGG | - | chr3.2:69462399-69462418 | MS.gene25903:CDS | 30.0% | |
| ! | CAAATATTTCGAGGTCATTT+TGG | - | chr3.2:69462408-69462427 | MS.gene25903:CDS | 30.0% |
| !! | ATTTGTTCTTGTTGATTCTC+TGG | - | chr3.2:69461344-69461363 | MS.gene25903:intron | 30.0% |
| !! | GCAAATCACAAATTTTAGCA+AGG | + | chr3.2:69461927-69461946 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGTTTTGTGCTAC+AGG | - | chr3.2:69462375-69462394 | MS.gene25903:CDS | 30.0% |
| AAAGAAAACAGAGGTTTGAG+TGG | - | chr3.2:69462532-69462551 | MS.gene25903:intron | 35.0% | |
| ACAAAACAAAACAATGGGGT+TGG | + | chr3.2:69462370-69462389 | None:intergenic | 35.0% | |
| ATGGTTTACTAGTTAACACC+TGG | - | chr3.2:69461603-69461622 | MS.gene25903:intron | 35.0% | |
| CTTACCATAAACAATACCCT+TGG | + | chr3.2:69462165-69462184 | None:intergenic | 35.0% | |
| TAAACAATACCCTTGGAAAC+TGG | + | chr3.2:69462158-69462177 | None:intergenic | 35.0% | |
| TAAACCATGAACAGCAGAAT+AGG | + | chr3.2:69461591-69461610 | None:intergenic | 35.0% | |
| TAGCTCAGAAACATACTTGT+AGG | + | chr3.2:69461146-69461165 | None:intergenic | 35.0% | |
| TGGTTTACTAGTTAACACCT+GGG | - | chr3.2:69461604-69461623 | MS.gene25903:intron | 35.0% | |
| TTACCCAACTCAAGTTTCAA+AGG | - | chr3.2:69462201-69462220 | MS.gene25903:intron | 35.0% | |
| ! | ACAAGTATGTTTCTGAGCTA+TGG | - | chr3.2:69461146-69461165 | MS.gene25903:CDS | 35.0% |
| !! | GTTTCCAAGGGTATTGTTTA+TGG | - | chr3.2:69462158-69462177 | MS.gene25903:intron | 35.0% |
| ATGGAGAATCGAAGAGTAGA+TGG | + | chr3.2:69461054-69461073 | None:intergenic | 40.0% | |
| GAAATGACCCAAGAATCAAC+TGG | - | chr3.2:69462455-69462474 | MS.gene25903:CDS | 40.0% | |
| GGGGCAGAAGTTACAATAAT+TGG | - | chr3.2:69461628-69461647 | MS.gene25903:intron | 40.0% | |
| TAGGGTTCTCAATTCCTACT+GGG | - | chr3.2:69462274-69462293 | MS.gene25903:intron | 40.0% | |
| TCAAGTTTCAAAGGAGCAAG+AGG | - | chr3.2:69462210-69462229 | MS.gene25903:intron | 40.0% | |
| TCAATTTGGTTGTGATGTGC+TGG | - | chr3.2:69462335-69462354 | MS.gene25903:intron | 40.0% | |
| TCATCCTATTCTGCTGTTCA+TGG | - | chr3.2:69461584-69461603 | MS.gene25903:intron | 40.0% | |
| TCTGCTGGAAAAGAAAACAG+AGG | - | chr3.2:69462523-69462542 | MS.gene25903:intron | 40.0% | |
| TTACTAGTTAACACCTGGGT+GGG | - | chr3.2:69461608-69461627 | MS.gene25903:intron | 40.0% | |
| TTAGGGTTCTCAATTCCTAC+TGG | - | chr3.2:69462273-69462292 | MS.gene25903:intron | 40.0% | |
| TTCAGGGATATGTTGTGTAC+CGG | - | chr3.2:69462102-69462121 | MS.gene25903:intron | 40.0% | |
| TTTACTAGTTAACACCTGGG+TGG | - | chr3.2:69461607-69461626 | MS.gene25903:intron | 40.0% | |
| !! | GCTCCTTTGAAACTTGAGTT+GGG | + | chr3.2:69462207-69462226 | None:intergenic | 40.0% |
| !! | TGCTCCTTTGAAACTTGAGT+TGG | + | chr3.2:69462208-69462227 | None:intergenic | 40.0% |
| AAACAGAGGTTTGAGTGGCA+AGG | - | chr3.2:69462537-69462556 | MS.gene25903:intron | 45.0% | |
| AACAGAGGTTTGAGTGGCAA+GGG | - | chr3.2:69462538-69462557 | MS.gene25903:intron | 45.0% | |
| ACAAACCTCATTGACCCAGT+AGG | + | chr3.2:69462291-69462310 | None:intergenic | 45.0% | |
| ATAGTCTCTAGGCCTGTACA+TGG | + | chr3.2:69461756-69461775 | None:intergenic | 45.0% | |
| ATATGTTGTGTACCGGGTGA+GGG | - | chr3.2:69462109-69462128 | MS.gene25903:intron | 45.0% | |
| CAATTCCTACTGGGTCAATG+AGG | - | chr3.2:69462283-69462302 | MS.gene25903:intron | 45.0% | |
| CATTGCTCAAGACCATGTAC+AGG | - | chr3.2:69461741-69461760 | MS.gene25903:intron | 45.0% | |
| GGTCTTGAGCAATGGTTCAA+AGG | + | chr3.2:69461735-69461754 | None:intergenic | 45.0% | |
| TACTAGTTAACACCTGGGTG+GGG | - | chr3.2:69461609-69461628 | MS.gene25903:intron | 45.0% | |
| TCAGGGATATGTTGTGTACC+GGG | - | chr3.2:69462103-69462122 | MS.gene25903:intron | 45.0% | |
| ! | CTGTACATGGTCTTGAGCAA+TGG | + | chr3.2:69461743-69461762 | None:intergenic | 45.0% |
| ! | TGGTGAGCCAGTTGATTCTT+GGG | + | chr3.2:69462465-69462484 | None:intergenic | 45.0% |
| ! | TTGGTGAGCCAGTTGATTCT+TGG | + | chr3.2:69462466-69462485 | None:intergenic | 45.0% |
| ! | TTTGGGTTACAAGGCTAAGC+AGG | - | chr3.2:69461285-69461304 | MS.gene25903:intron | 45.0% |
| !! | GCTTAGCCTTGTAACCCAAA+CGG | + | chr3.2:69461285-69461304 | None:intergenic | 45.0% |
| AGGAAGAGGCCAGTTTCCAA+GGG | - | chr3.2:69462146-69462165 | MS.gene25903:intron | 50.0% | |
| GATATGTTGTGTACCGGGTG+AGG | - | chr3.2:69462108-69462127 | MS.gene25903:intron | 50.0% | |
| TAGGAAGAGGCCAGTTTCCA+AGG | - | chr3.2:69462145-69462164 | MS.gene25903:intron | 50.0% | |
| TATGGTAAGCCCACCAACCA+GGG | - | chr3.2:69462176-69462195 | MS.gene25903:intron | 50.0% | |
| TCTGGTGAGACGAACGATAG+AGG | + | chr3.2:69461239-69461258 | None:intergenic | 50.0% | |
| TGCGATTCATGCAACGTGTG+AGG | - | chr3.2:69461191-69461210 | MS.gene25903:CDS | 50.0% | |
| TTATGGTAAGCCCACCAACC+AGG | - | chr3.2:69462175-69462194 | MS.gene25903:intron | 50.0% | |
| TTCTCTTCCAGTTTGCCCTG+CGG | + | chr3.2:69462591-69462610 | None:intergenic | 50.0% | |
| ! | ACGGAAGCTTGGTGGTCTTA+GGG | - | chr3.2:69462256-69462275 | MS.gene25903:intron | 50.0% |
| ! | ATGGACGGGCTTTGTGGTAA+CGG | + | chr3.2:69462567-69462586 | None:intergenic | 50.0% |
| ! | TTTGGTTGTGATGTGCTGGC+TGG | - | chr3.2:69462339-69462358 | MS.gene25903:intron | 50.0% |
| !! | ACTTGAGTTGGGTAACTCCC+TGG | + | chr3.2:69462196-69462215 | None:intergenic | 50.0% |
| AGTTCCCTGTGCTTGTGGAC+TGG | + | chr3.2:69462490-69462509 | None:intergenic | 55.0% | |
| CAACCCAGTCCACAAGCACA+GGG | - | chr3.2:69462483-69462502 | MS.gene25903:CDS | 55.0% | |
| CACAAGCACAGGGAACTTCG+TGG | - | chr3.2:69462493-69462512 | MS.gene25903:CDS | 55.0% | |
| CACGAAGTTCCCTGTGCTTG+TGG | + | chr3.2:69462495-69462514 | None:intergenic | 55.0% | |
| CTTCGTGGTCTCACTTCTGC+TGG | - | chr3.2:69462508-69462527 | MS.gene25903:CDS | 55.0% | |
| GAGTTGGGTAACTCCCTGGT+TGG | + | chr3.2:69462192-69462211 | None:intergenic | 55.0% | |
| GTTCCCTGTGCTTGTGGACT+GGG | + | chr3.2:69462489-69462508 | None:intergenic | 55.0% | |
| TACGCAGAGGTGGTAGGAAG+AGG | - | chr3.2:69462132-69462151 | MS.gene25903:intron | 55.0% | |
| TCATGCAACGTGTGAGGTGC+TGG | - | chr3.2:69461197-69461216 | MS.gene25903:CDS | 55.0% | |
| TCTCTTCCAGTTTGCCCTGC+GGG | + | chr3.2:69462590-69462609 | None:intergenic | 55.0% | |
| TGGGTAACTCCCTGGTTGGT+GGG | + | chr3.2:69462188-69462207 | None:intergenic | 55.0% | |
| TTGGGTAACTCCCTGGTTGG+TGG | + | chr3.2:69462189-69462208 | None:intergenic | 55.0% | |
| TTGTAACTTCTGCCCCACCC+AGG | + | chr3.2:69461624-69461643 | None:intergenic | 55.0% | |
| ! | CATGCAACGTGTGAGGTGCT+GGG | - | chr3.2:69461198-69461217 | MS.gene25903:CDS | 55.0% |
| ! | GACGGAAGCTTGGTGGTCTT+AGG | - | chr3.2:69462255-69462274 | MS.gene25903:intron | 55.0% |
| AGTTTGCCCTGCGGGATGGA+CGG | + | chr3.2:69462582-69462601 | None:intergenic | 60.0% | |
| CAGACCCACTCGTCCTGACA+AGG | - | chr3.2:69461255-69461274 | MS.gene25903:CDS | 60.0% | |
| CCAACCCAGTCCACAAGCAC+AGG | - | chr3.2:69462482-69462501 | MS.gene25903:CDS | 60.0% | |
| CCTGACAAGGCTCGCCGTTT+GGG | - | chr3.2:69461268-69461287 | MS.gene25903:intron | 60.0% | |
| CTTGTCAGGACGAGTGGGTC+TGG | + | chr3.2:69461257-69461276 | None:intergenic | 60.0% | |
| TCCAGCACGCTCTTCAGCGA+CGG | + | chr3.2:69462237-69462256 | None:intergenic | 60.0% | |
| TCCTGACAAGGCTCGCCGTT+TGG | - | chr3.2:69461267-69461286 | MS.gene25903:intron | 60.0% | |
| TTCCAGTTTGCCCTGCGGGA+TGG | + | chr3.2:69462586-69462605 | None:intergenic | 60.0% | |
| ! | AACGGTAACGGCGGAGAGAC+AGG | + | chr3.2:69462621-69462640 | None:intergenic | 60.0% |
| ! | ACGGTAACGGCGGAGAGACA+GGG | + | chr3.2:69462620-69462639 | None:intergenic | 60.0% |
| ! | CGAGCCTTGTCAGGACGAGT+GGG | + | chr3.2:69461262-69461281 | None:intergenic | 60.0% |
| ! | GGCTCGCCGTTTGGGTTACA+AGG | - | chr3.2:69461276-69461295 | MS.gene25903:intron | 60.0% |
| ! | TCGCTGAAGAGCGTGCTGGA+CGG | - | chr3.2:69462237-69462256 | MS.gene25903:intron | 60.0% |
| ! | TGAGGGTACGCAGAGGTGGT+AGG | - | chr3.2:69462126-69462145 | MS.gene25903:intron | 60.0% |
| !! | CCTGTGCTTGTGGACTGGGT+TGG | + | chr3.2:69462485-69462504 | None:intergenic | 60.0% |
| ACAAAGCCCGTCCATCCCGC+AGG | - | chr3.2:69462572-69462591 | MS.gene25903:intron | 65.0% | |
| CAAAGCCCGTCCATCCCGCA+GGG | - | chr3.2:69462573-69462592 | MS.gene25903:intron | 65.0% | |
| CACCTCTGCGTACCCTCACC+CGG | + | chr3.2:69462124-69462143 | None:intergenic | 65.0% | |
| CGTGCTGGACGGAAGCTTGG+TGG | - | chr3.2:69462248-69462267 | MS.gene25903:intron | 65.0% | |
| GAGCGTGCTGGACGGAAGCT+TGG | - | chr3.2:69462245-69462264 | MS.gene25903:intron | 65.0% | |
| GTCCATCCCGCAGGGCAAAC+TGG | - | chr3.2:69462581-69462600 | MS.gene25903:intron | 65.0% | |
| GTTTGCCCTGCGGGATGGAC+GGG | + | chr3.2:69462581-69462600 | None:intergenic | 65.0% | |
| ! | CCCAAACGGCGAGCCTTGTC+AGG | + | chr3.2:69461271-69461290 | None:intergenic | 65.0% |
| ! | GCGAGCCTTGTCAGGACGAG+TGG | + | chr3.2:69461263-69461282 | None:intergenic | 65.0% |
| ! | TACCGGGTGAGGGTACGCAG+AGG | - | chr3.2:69462119-69462138 | MS.gene25903:intron | 65.0% |
| ! | TCCGTCGCTGAAGAGCGTGC+TGG | - | chr3.2:69462233-69462252 | MS.gene25903:intron | 65.0% |
| ! | TGCGGGATGGACGGGCTTTG+TGG | + | chr3.2:69462573-69462592 | None:intergenic | 65.0% |
| ! | CGGGTGAGGGTACGCAGAGG+TGG | - | chr3.2:69462122-69462141 | MS.gene25903:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 69461039 | 69462642 | 69461039 | ID=MS.gene25903 |
| chr3.2 | mRNA | 69461039 | 69462642 | 69461039 | ID=MS.gene25903.t1;Parent=MS.gene25903 |
| chr3.2 | exon | 69462639 | 69462642 | 69462639 | ID=MS.gene25903.t1.exon1;Parent=MS.gene25903.t1 |
| chr3.2 | CDS | 69462639 | 69462642 | 69462639 | ID=cds.MS.gene25903.t1;Parent=MS.gene25903.t1 |
| chr3.2 | exon | 69462375 | 69462541 | 69462375 | ID=MS.gene25903.t1.exon2;Parent=MS.gene25903.t1 |
| chr3.2 | CDS | 69462375 | 69462541 | 69462375 | ID=cds.MS.gene25903.t1;Parent=MS.gene25903.t1 |
| chr3.2 | exon | 69461377 | 69461574 | 69461377 | ID=MS.gene25903.t1.exon3;Parent=MS.gene25903.t1 |
| chr3.2 | CDS | 69461377 | 69461574 | 69461377 | ID=cds.MS.gene25903.t1;Parent=MS.gene25903.t1 |
| chr3.2 | exon | 69461039 | 69461284 | 69461039 | ID=MS.gene25903.t1.exon4;Parent=MS.gene25903.t1 |
| chr3.2 | CDS | 69461039 | 69461284 | 69461039 | ID=cds.MS.gene25903.t1;Parent=MS.gene25903.t1 |
| Gene Sequence |
| Protein sequence |
