AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40789

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40789.t1 MTR_1g084040 95.290 276 6 1 1 276 3 271 0.0 528
MS.gene40789.t1 MTR_7g112110 74.020 204 53 0 1 204 5 208 3.16e-113 325
MS.gene40789.t1 MTR_7g112120 70.388 206 57 2 1 202 1 206 4.11e-104 302
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40789.t1 AT1G56423 55.970 268 101 3 1 268 1 251 1.29e-106 310
MS.gene40789.t1 AT1G56423 55.515 272 114 3 1 268 1 269 1.54e-106 310

Find 70 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATTTATGATGTGATTAA+TGG 0.186748 1.2:-59473272 MS.gene40789:CDS
GGCACTTTGTTTGGTGCATA+TGG 0.213119 1.2:-59473386 MS.gene40789:CDS
ATAACCGAGCCTTTCTGTTT+TGG 0.259791 1.2:+59474802 None:intergenic
CGTCAAGCCAAGCGGATTAT+AGG 0.285681 1.2:-59473491 MS.gene40789:CDS
AGGGGTACTGGCACTTTGTT+TGG 0.287164 1.2:-59473395 MS.gene40789:CDS
TGACATGGGCTCTGGAACTT+TGG 0.287746 1.2:-59473696 MS.gene40789:CDS
TCACCATCAAAAGAAGTATA+TGG 0.340203 1.2:+59473170 None:intergenic
CCTTGTTGACGCTGTTAGTC+AGG 0.341491 1.2:-59473582 MS.gene40789:CDS
ATAGGCCCCATCATCTCTTC+TGG 0.347557 1.2:-59473473 MS.gene40789:CDS
GCACTTTGTTTGGTGCATAT+GGG 0.347749 1.2:-59473385 MS.gene40789:CDS
CAATCACAGAAGGGTTCCTT+AGG 0.357038 1.2:-59473415 MS.gene40789:CDS
ATCCAATGTGGATGAATCTA+TGG 0.357729 1.2:-59473066 MS.gene40789:CDS
GATGGCGAAGTTCCTACTTT+TGG 0.378746 1.2:-59473134 MS.gene40789:CDS
TGCGCAGAAAGAAAGTAAAA+AGG 0.400376 1.2:-59473531 MS.gene40789:CDS
AGTTGGGTTGGTGGCAGAAT+AGG 0.401598 1.2:-59473299 MS.gene40789:CDS
TAATGGAGTGCATTTGTTGC+TGG 0.410499 1.2:-59473255 MS.gene40789:CDS
GAGCAAAGCCTTGGTAGAAT+TGG 0.427351 1.2:-59473347 MS.gene40789:CDS
GGTAGAATTGGCTATCTTGT+TGG 0.428206 1.2:-59473335 MS.gene40789:CDS
GGGAGATGATTCATATGAAC+TGG 0.428386 1.2:+59473097 None:intergenic
CACTTTGTTTGGTGCATATG+GGG 0.431463 1.2:-59473384 MS.gene40789:CDS
TTGGAAGTCACATGGGCAGT+TGG 0.444851 1.2:-59473316 MS.gene40789:CDS
AGTCACATGGGCAGTTGGGT+TGG 0.461400 1.2:-59473311 MS.gene40789:CDS
GAAGGGTTCCTTAGGGGTAC+TGG 0.461508 1.2:-59473407 MS.gene40789:CDS
TTGCTGGAATTTGTTCAAAC+AGG 0.465120 1.2:-59473239 MS.gene40789:CDS
CACATGGGCAGTTGGGTTGG+TGG 0.487418 1.2:-59473308 MS.gene40789:CDS
TGGAAGTCACATGGGCAGTT+GGG 0.489000 1.2:-59473315 MS.gene40789:CDS
TAATGTGAACTTTCCACTCT+GGG 0.493495 1.2:+59473730 None:intergenic
CTTGTTGACGCTGTTAGTCA+GGG 0.493758 1.2:-59473581 MS.gene40789:CDS
CCCCATCATCTCTTCTGGAT+GGG 0.496655 1.2:-59473468 MS.gene40789:CDS
TTCTTCGGGGAGCAAAGCCT+TGG 0.501943 1.2:-59473356 MS.gene40789:CDS
TTCGAAGCTATTTATTATGG+TGG 0.502729 1.2:-59473440 MS.gene40789:CDS
TTCCATAGATTCATCCACAT+TGG 0.502813 1.2:+59473064 None:intergenic
TCCACATTGGATTCTTCAGT+GGG 0.511116 1.2:+59473077 None:intergenic
GTCCCATCCAGAAGAGATGA+TGG 0.512466 1.2:+59473466 None:intergenic
ATCGTTGCTCTTAGCATCAC+AGG 0.518180 1.2:-59474762 MS.gene40789:intron
GCCCCATCATCTCTTCTGGA+TGG 0.519007 1.2:-59473469 MS.gene40789:CDS
AGGGAGCTTATTGGCGAGGA+GGG 0.520387 1.2:-59473758 MS.gene40789:CDS
CATGGATTTCCAAAACAGAA+AGG 0.523987 1.2:-59474811 MS.gene40789:CDS
ATAATGTGAACTTTCCACTC+TGG 0.524601 1.2:+59473729 None:intergenic
CTTTCAGAGCTGCCAAAAGT+AGG 0.529923 1.2:+59473122 None:intergenic
CTATCTTGTTGGAAGTCACA+TGG 0.536263 1.2:-59473324 MS.gene40789:CDS
AACTTTGGCATGTGCTGTCA+AGG 0.544459 1.2:-59473681 MS.gene40789:CDS
ACTTTGTTTGGTGCATATGG+GGG 0.548774 1.2:-59473383 MS.gene40789:CDS
AATCACAGAAGGGTTCCTTA+GGG 0.565296 1.2:-59473414 MS.gene40789:CDS
TTGACGAGAAGCCAATTTCG+CGG 0.567474 1.2:+59473508 None:intergenic
TATGGTGGTACAATCACAGA+AGG 0.573148 1.2:-59473425 MS.gene40789:CDS
TTGGCATGTGCTGTCAAGGA+AGG 0.578441 1.2:-59473677 MS.gene40789:CDS
GATGGGGCCTATAATCCGCT+TGG 0.579892 1.2:+59473484 None:intergenic
TCCCATCCAGAAGAGATGAT+GGG 0.583665 1.2:+59473467 None:intergenic
ATCCACATTGGATTCTTCAG+TGG 0.584833 1.2:+59473076 None:intergenic
ACAAAGTGCCAGTACCCCTA+AGG 0.589908 1.2:+59473399 None:intergenic
CCTGACTAACAGCGTCAACA+AGG 0.594656 1.2:+59473582 None:intergenic
ATTTCCAAAACAGAAAGGCT+CGG 0.616084 1.2:-59474806 MS.gene40789:CDS
GGGAGCTTATTGGCGAGGAG+GGG 0.620894 1.2:-59473757 MS.gene40789:CDS
CCCATCCAGAAGAGATGATG+GGG 0.628978 1.2:+59473468 None:intergenic
TTGTTGACGCTGTTAGTCAG+GGG 0.644595 1.2:-59473580 MS.gene40789:CDS
GGTGAAGTTCCGACTCATGA+TGG 0.644994 1.2:-59473152 MS.gene40789:CDS
TATCTTGTTGGAAGTCACAT+GGG 0.645553 1.2:-59473323 MS.gene40789:CDS
ATGCAGGGAGCTTATTGGCG+AGG 0.646429 1.2:-59473762 MS.gene40789:CDS
CAGGGAGCTTATTGGCGAGG+AGG 0.648197 1.2:-59473759 MS.gene40789:CDS
GGAACTTCGCCATCATGAGT+CGG 0.655708 1.2:+59473143 None:intergenic
TGTGATGCTAAGAGCAACGA+TGG 0.668664 1.2:+59474764 None:intergenic
TGGCTTCTCGTCAAGCCAAG+CGG 0.674972 1.2:-59473499 MS.gene40789:CDS
ATGGTGGTACAATCACAGAA+GGG 0.678014 1.2:-59473424 MS.gene40789:CDS
CAAGATAGCCAATTCTACCA+AGG 0.680375 1.2:+59473339 None:intergenic
ATCACAGAAGGGTTCCTTAG+GGG 0.680466 1.2:-59473413 MS.gene40789:CDS
CTGACTAACAGCGTCAACAA+GGG 0.688363 1.2:+59473583 None:intergenic
GATGCTAAGAGCAACGATGG+CGG 0.700912 1.2:+59474767 None:intergenic
TCCCACTGAAGAATCCAATG+TGG 0.713284 1.2:-59473078 MS.gene40789:CDS
GAGGAGGGGTCATCCCAGAG+TGG 0.752894 1.2:-59473743 MS.gene40789:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAAAAATACAAAAAATA+TGG + chr1.2:59473894-59473913 None:intergenic 10.0%
!! ATATATCATTATATTTATTC+TGG - chr1.2:59473811-59473830 MS.gene40789:intron 10.0%
!! AGAAAATGAAGAAATATAAT+TGG - chr1.2:59473714-59473733 MS.gene40789:CDS 15.0%
!! TAGTAAATAAAATGATCAAT+TGG + chr1.2:59473167-59473186 None:intergenic 15.0%
!! TGAAATAAAATGAAATTGAA+TGG - chr1.2:59473755-59473774 MS.gene40789:CDS 15.0%
!!! ATTATATTTCTTCATTTTCT+CGG + chr1.2:59473714-59473733 None:intergenic 15.0%
!! ATGATTTATGATGTGATTAA+TGG - chr1.2:59474569-59474588 MS.gene40789:intron 20.0%
!! TTATTGGAATGAAATGAAAA+TGG - chr1.2:59473862-59473881 MS.gene40789:intron 20.0%
!!! ATTATTAAACTGTTTTGACA+TGG - chr1.2:59474130-59474149 MS.gene40789:intron 20.0%
!!! ATTTTCATTTCATTCCAATA+AGG + chr1.2:59473863-59473882 None:intergenic 20.0%
!!! TTATTAAACTGTTTTGACAT+GGG - chr1.2:59474131-59474150 MS.gene40789:intron 20.0%
!!! TTTTCATTTCATTCCAATAA+GGG + chr1.2:59473862-59473881 None:intergenic 20.0%
!!! TTTTTCGAAGCTATTTATTA+TGG - chr1.2:59474398-59474417 MS.gene40789:intron 20.0%
! AAAATAGTCACATATCATTG+TGG + chr1.2:59473654-59473673 None:intergenic 25.0%
! ATAAGCTTAATTAGTGTAAG+AGG + chr1.2:59473226-59473245 None:intergenic 25.0%
! TAATTGGACATGTATAGAAT+TGG - chr1.2:59473730-59473749 MS.gene40789:CDS 25.0%
ATAGCAGCATTACATTGTTA+TGG + chr1.2:59473521-59473540 None:intergenic 30.0%
ATTACATTGTTATGGCATAG+CGG + chr1.2:59473513-59473532 None:intergenic 30.0%
TCAATGTTGAATTCACTGTT+TGG - chr1.2:59473445-59473464 MS.gene40789:CDS 30.0%
TTCGAAGCTATTTATTATGG+TGG - chr1.2:59474401-59474420 MS.gene40789:intron 30.0%
! GATTGAATCTAGAATTCTGT+TGG - chr1.2:59473561-59473580 MS.gene40789:CDS 30.0%
! TCACCATCAAAAGAAGTATA+TGG + chr1.2:59474674-59474693 None:intergenic 30.0%
ATAATGTGAACTTTCCACTC+TGG + chr1.2:59474115-59474134 None:intergenic 35.0%
ATCCAATGTGGATGAATCTA+TGG - chr1.2:59474775-59474794 MS.gene40789:CDS 35.0%
ATTCCAATAAGGGAGGAATA+TGG + chr1.2:59473852-59473871 None:intergenic 35.0%
ATTTCCAAAACAGAAAGGCT+CGG - chr1.2:59473035-59473054 MS.gene40789:CDS 35.0%
CTACTCATGTTGAAAAAGCA+AGG - chr1.2:59474216-59474235 MS.gene40789:intron 35.0%
GGCTACATATAGCAATGTTT+AGG + chr1.2:59473313-59473332 None:intergenic 35.0%
TAATGTGAACTTTCCACTCT+GGG + chr1.2:59474114-59474133 None:intergenic 35.0%
TATCTTGTTGGAAGTCACAT+GGG - chr1.2:59474518-59474537 MS.gene40789:intron 35.0%
TCATATTTGTGCTTGTGATC+TGG - chr1.2:59473254-59473273 MS.gene40789:CDS 35.0%
TCATTTCATTCCAATAAGGG+AGG + chr1.2:59473859-59473878 None:intergenic 35.0%
TGACATTCGAATTGTGATCA+GGG - chr1.2:59473132-59473151 MS.gene40789:CDS 35.0%
TGCGCAGAAAGAAAGTAAAA+AGG - chr1.2:59474310-59474329 MS.gene40789:intron 35.0%
TTCCAATAAGGGAGGAATAT+GGG + chr1.2:59473851-59473870 None:intergenic 35.0%
TTCCATAGATTCATCCACAT+TGG + chr1.2:59474780-59474799 None:intergenic 35.0%
TTGACATTCGAATTGTGATC+AGG - chr1.2:59473131-59473150 MS.gene40789:CDS 35.0%
! CAGTTTGCTTCAGAACAATA+AGG - chr1.2:59473475-59473494 MS.gene40789:CDS 35.0%
! GCTCCATATACTTCTTTTGA+TGG - chr1.2:59474668-59474687 MS.gene40789:intron 35.0%
! TTGCTGGAATTTGTTCAAAC+AGG - chr1.2:59474602-59474621 MS.gene40789:intron 35.0%
AACAACACGTGATCTCACTT+AGG + chr1.2:59473334-59473353 None:intergenic 40.0%
AAGTAAAAAGGCCGCGAAAT+TGG - chr1.2:59474322-59474341 MS.gene40789:intron 40.0%
AATCACAGAAGGGTTCCTTA+GGG - chr1.2:59474427-59474446 MS.gene40789:intron 40.0%
ACAAGATACTCCACAGTTCT+CGG - chr1.2:59473282-59473301 MS.gene40789:CDS 40.0%
ATCCACATTGGATTCTTCAG+TGG + chr1.2:59474768-59474787 None:intergenic 40.0%
ATCCCATATTCCTCCCTTAT+TGG - chr1.2:59473846-59473865 MS.gene40789:intron 40.0%
ATGGTGGTACAATCACAGAA+GGG - chr1.2:59474417-59474436 MS.gene40789:intron 40.0%
CAAGATAGCCAATTCTACCA+AGG + chr1.2:59474505-59474524 None:intergenic 40.0%
CTATCTTGTTGGAAGTCACA+TGG - chr1.2:59474517-59474536 MS.gene40789:intron 40.0%
GAAAAATGCAGGGAGCTTAT+TGG - chr1.2:59474074-59474093 MS.gene40789:intron 40.0%
GACATTCGAATTGTGATCAG+GGG - chr1.2:59473133-59473152 MS.gene40789:CDS 40.0%
GCTTTCAGCTGAAAAATGCA+GGG - chr1.2:59474064-59474083 MS.gene40789:intron 40.0%
GGGAGATGATTCATATGAAC+TGG + chr1.2:59474747-59474766 None:intergenic 40.0%
GGTAGAATTGGCTATCTTGT+TGG - chr1.2:59474506-59474525 MS.gene40789:intron 40.0%
TATGGTGGTACAATCACAGA+AGG - chr1.2:59474416-59474435 MS.gene40789:intron 40.0%
TCCACATTGGATTCTTCAGT+GGG + chr1.2:59474767-59474786 None:intergenic 40.0%
TGCTTTCAGCTGAAAAATGC+AGG - chr1.2:59474063-59474082 MS.gene40789:intron 40.0%
! ATAACCGAGCCTTTCTGTTT+TGG + chr1.2:59473042-59473061 None:intergenic 40.0%
! ATGTTTTGCTGCATCTGTTG+GGG + chr1.2:59474291-59474310 None:intergenic 40.0%
! CATACAGTCTTTTGTTGCTG+AGG + chr1.2:59473932-59473951 None:intergenic 40.0%
! CATGTTTTGCTGCATCTGTT+GGG + chr1.2:59474292-59474311 None:intergenic 40.0%
! CGGAGTGAACAAGTTTTCAA+GGG + chr1.2:59473694-59473713 None:intergenic 40.0%
! TAATGGAGTGCATTTGTTGC+TGG - chr1.2:59474586-59474605 MS.gene40789:intron 40.0%
! TCGGAGTGAACAAGTTTTCA+AGG + chr1.2:59473695-59473714 None:intergenic 40.0%
!! ACTTTGTTTGGTGCATATGG+GGG - chr1.2:59474458-59474477 MS.gene40789:intron 40.0%
!! CACTTTGTTTGGTGCATATG+GGG - chr1.2:59474457-59474476 MS.gene40789:intron 40.0%
!! GCACTTTGTTTGGTGCATAT+GGG - chr1.2:59474456-59474475 MS.gene40789:intron 40.0%
AACTTTGGCATGTGCTGTCA+AGG - chr1.2:59474160-59474179 MS.gene40789:intron 45.0%
AGACCATCAACTACACTGTC+TGG - chr1.2:59474011-59474030 MS.gene40789:intron 45.0%
ATCACAGAAGGGTTCCTTAG+GGG - chr1.2:59474428-59474447 MS.gene40789:intron 45.0%
ATCGTTGCTCTTAGCATCAC+AGG - chr1.2:59473079-59473098 MS.gene40789:CDS 45.0%
ATTCGAATTGTGATCAGGGG+AGG - chr1.2:59473136-59473155 MS.gene40789:CDS 45.0%
CAATCACAGAAGGGTTCCTT+AGG - chr1.2:59474426-59474445 MS.gene40789:intron 45.0%
CAATCAGTGCTGTCAAACAG+CGG + chr1.2:59473546-59473565 None:intergenic 45.0%
CTACCAGACAGTGTAGTTGA+TGG + chr1.2:59474017-59474036 None:intergenic 45.0%
CTGACTAACAGCGTCAACAA+GGG + chr1.2:59474261-59474280 None:intergenic 45.0%
CTTGTTGACGCTGTTAGTCA+GGG - chr1.2:59474260-59474279 MS.gene40789:intron 45.0%
CTTTCAGAGCTGCCAAAAGT+AGG + chr1.2:59474722-59474741 None:intergenic 45.0%
GAGCAAAGCCTTGGTAGAAT+TGG - chr1.2:59474494-59474513 MS.gene40789:intron 45.0%
TCCCACTGAAGAATCCAATG+TGG - chr1.2:59474763-59474782 MS.gene40789:CDS 45.0%
TCCCATCCAGAAGAGATGAT+GGG + chr1.2:59474377-59474396 None:intergenic 45.0%
TGTGATGCTAAGAGCAACGA+TGG + chr1.2:59473080-59473099 None:intergenic 45.0%
TTAGGATCTACCGAGAACTG+TGG + chr1.2:59473295-59473314 None:intergenic 45.0%
TTGACGAGAAGCCAATTTCG+CGG + chr1.2:59474336-59474355 None:intergenic 45.0%
TTGTTGACGCTGTTAGTCAG+GGG - chr1.2:59474261-59474280 MS.gene40789:intron 45.0%
TTTGTGCTTGTGATCTGGAG+TGG - chr1.2:59473259-59473278 MS.gene40789:CDS 45.0%
! GATGGCGAAGTTCCTACTTT+TGG - chr1.2:59474707-59474726 MS.gene40789:intron 45.0%
! GCATGTTTTGCTGCATCTGT+TGG + chr1.2:59474293-59474312 None:intergenic 45.0%
! TGTTTTGCTGCATCTGTTGG+GGG + chr1.2:59474290-59474309 None:intergenic 45.0%
!! GGCACTTTGTTTGGTGCATA+TGG - chr1.2:59474455-59474474 MS.gene40789:intron 45.0%
!!! AACTGTTTTGACATGGGCTC+TGG - chr1.2:59474137-59474156 MS.gene40789:intron 45.0%
ATAGGCCCCATCATCTCTTC+TGG - chr1.2:59474368-59474387 MS.gene40789:intron 50.0%
CCCATCCAGAAGAGATGATG+GGG + chr1.2:59474376-59474395 None:intergenic 50.0%
CCCCATCATCTCTTCTGGAT+GGG - chr1.2:59474373-59474392 MS.gene40789:intron 50.0%
CCTGACTAACAGCGTCAACA+AGG + chr1.2:59474262-59474281 None:intergenic 50.0%
CCTTGTTGACGCTGTTAGTC+AGG - chr1.2:59474259-59474278 MS.gene40789:intron 50.0%
GATGCTAAGAGCAACGATGG+CGG + chr1.2:59473077-59473096 None:intergenic 50.0%
GGAACTTCGCCATCATGAGT+CGG + chr1.2:59474701-59474720 None:intergenic 50.0%
GGTGAAGTTCCGACTCATGA+TGG - chr1.2:59474689-59474708 MS.gene40789:intron 50.0%
GTCCCATCCAGAAGAGATGA+TGG + chr1.2:59474378-59474397 None:intergenic 50.0%
TGGAAGTCACATGGGCAGTT+GGG - chr1.2:59474526-59474545 MS.gene40789:intron 50.0%
TTGGAAGTCACATGGGCAGT+TGG - chr1.2:59474525-59474544 MS.gene40789:intron 50.0%
TTGGCATGTGCTGTCAAGGA+AGG - chr1.2:59474164-59474183 MS.gene40789:intron 50.0%
! ACAAAGTGCCAGTACCCCTA+AGG + chr1.2:59474445-59474464 None:intergenic 50.0%
!! AGGGGTACTGGCACTTTGTT+TGG - chr1.2:59474446-59474465 MS.gene40789:intron 50.0%
!! AGTTGGGTTGGTGGCAGAAT+AGG - chr1.2:59474542-59474561 MS.gene40789:intron 50.0%
!! CGTCAAGCCAAGCGGATTAT+AGG - chr1.2:59474350-59474369 MS.gene40789:intron 50.0%
!! TGACATGGGCTCTGGAACTT+TGG - chr1.2:59474145-59474164 MS.gene40789:intron 50.0%
!! TGTTTGGTGCATATGGGGGA+GGG - chr1.2:59474462-59474481 MS.gene40789:intron 50.0%
!! TTGTTTGGTGCATATGGGGG+AGG - chr1.2:59474461-59474480 MS.gene40789:intron 50.0%
AGGGAGCTTATTGGCGAGGA+GGG - chr1.2:59474083-59474102 MS.gene40789:intron 55.0%
AGTCACATGGGCAGTTGGGT+TGG - chr1.2:59474530-59474549 MS.gene40789:intron 55.0%
ATATGGGGGAGGGTTCTTCG+GGG - chr1.2:59474472-59474491 MS.gene40789:intron 55.0%
ATGCAGGGAGCTTATTGGCG+AGG - chr1.2:59474079-59474098 MS.gene40789:intron 55.0%
CATATGGGGGAGGGTTCTTC+GGG - chr1.2:59474471-59474490 MS.gene40789:intron 55.0%
GATGGGGCCTATAATCCGCT+TGG + chr1.2:59474360-59474379 None:intergenic 55.0%
GCATATGGGGGAGGGTTCTT+CGG - chr1.2:59474470-59474489 MS.gene40789:intron 55.0%
GCCCCATCATCTCTTCTGGA+TGG - chr1.2:59474372-59474391 MS.gene40789:intron 55.0%
TGGCTTCTCGTCAAGCCAAG+CGG - chr1.2:59474342-59474361 MS.gene40789:intron 55.0%
TTCTTCGGGGAGCAAAGCCT+TGG - chr1.2:59474485-59474504 MS.gene40789:intron 55.0%
! GAAGGGTTCCTTAGGGGTAC+TGG - chr1.2:59474434-59474453 MS.gene40789:intron 55.0%
CAGGGAGCTTATTGGCGAGG+AGG - chr1.2:59474082-59474101 MS.gene40789:intron 60.0%
GGGAGCTTATTGGCGAGGAG+GGG - chr1.2:59474084-59474103 MS.gene40789:intron 60.0%
!! CACATGGGCAGTTGGGTTGG+TGG - chr1.2:59474533-59474552 MS.gene40789:intron 60.0%
GAGGAGGGGTCATCCCAGAG+TGG - chr1.2:59474098-59474117 MS.gene40789:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 59473031 59474832 59473031 ID=MS.gene40789
chr1.2 mRNA 59473031 59474832 59473031 ID=MS.gene40789.t1;Parent=MS.gene40789
chr1.2 exon 59474763 59474832 59474763 ID=MS.gene40789.t1.exon1;Parent=MS.gene40789.t1
chr1.2 CDS 59474763 59474832 59474763 ID=cds.MS.gene40789.t1;Parent=MS.gene40789.t1
chr1.2 exon 59473031 59473791 59473031 ID=MS.gene40789.t1.exon2;Parent=MS.gene40789.t1
chr1.2 CDS 59473031 59473791 59473031 ID=cds.MS.gene40789.t1;Parent=MS.gene40789.t1
Gene Sequence

>MS.gene40789

ATGGATTTCCAAAACAGAAAGGCTCGGTTATTCGTAATTGTCGCCGCCATCGTTGCTCTTAGCATCACAGGTATTTTATTCATTTCTGATTTTCAACTATTTGACATTCGAATTGTGATCAGGGGAGGTTTTACCAATTGATCATTTTATTTACTATCTTTTCTAATAATTTCATTGATGATTTTTCTAATTCCTCTTACACTAATTAAGCTTATTAGCGATTTCATATTTGTGCTTGTGATCTGGAGTGGACAAGATACTCCACAGTTCTCGGTAGATCCTAAACATTGCTATATGTAGCCTAAGTGAGATCACGTGTTGTTACTAAAATCTATAATGTCTTATCTTCTATAAAACAATTTAATTTACTATGTTGTTCATTTTGATGTTCTTCTTTTATTGATAAGACATGCTTCAATGTTGAATTCACTGTTTGGAAAGTAGCAGTTTGCTTCAGAACAATAAGGATTGTTCAAATTCCGCTATGCCATAACAATGTAATGCTGCTATAGCCGCTGTTTGACAGCACTGATTGAATCTAGAATTCTGTTGGTTTAATAGCTAAGACTGTATTTTAAGAGTTTAATAGCAATATGATGACAACTCTGTAAATTTTTTGTCCACAATGATATGTGACTATTTTGCAACGTCGTGATATTGCCCTTGAAAACTTGTTCACTCCGAGAAAATGAAGAAATATAATTGGACATGTATAGAATTGGAATGAAATAAAATGAAATTGAATGGAGTTAAATGTAACTACATGTCTACATTGATGAAATATATCATTATATTTATTCTGGAGTGCAGATTACATCCCATATTCCTCCCTTATTGGAATGAAATGAAAATGGTTGATTCCATATTTTTTGTATTTTTATGTTTTTTTTATTGTGTTCCTCAGCAACAAAAGACTGTATGATTCTTACAAAATGTTAATGTTTAAATTCTGATCGTGTATGTTCATCTTTGACTGTTGAAGACCATCAACTACACTGTCTGGTAGTGTCTGCTTGTGCTAACTTAAGTTTCTGCTTTCAGCTGAAAAATGCAGGGAGCTTATTGGCGAGGAGGGGTCATCCCAGAGTGGAAAGTTCACATTATTAAACTGTTTTGACATGGGCTCTGGAACTTTGGCATGTGCTGTCAAGGAAGGCGTCAAACTCTATTTTTACAGTATTAGATCTACTCATGTTGAAAAAGCAAGGCAACGAGCGATCGAGTCTGCCCTTGTTGACGCTGTTAGTCAGGGGATGCCCCCAACAGATGCAGCAAAACATGCGCAGAAAGAAAGTAAAAAGGCCGCGAAATTGGCTTCTCGTCAAGCCAAGCGGATTATAGGCCCCATCATCTCTTCTGGATGGGACTTTTTCGAAGCTATTTATTATGGTGGTACAATCACAGAAGGGTTCCTTAGGGGTACTGGCACTTTGTTTGGTGCATATGGGGGAGGGTTCTTCGGGGAGCAAAGCCTTGGTAGAATTGGCTATCTTGTTGGAAGTCACATGGGCAGTTGGGTTGGTGGCAGAATAGGATTAATGATTTATGATGTGATTAATGGAGTGCATTTGTTGCTGGAATTTGTTCAAACAGGTGAAATTGAAGTTCGTAAAACATTAGTTCTTGAAAATTCTGACGCTCCATATACTTCTTTTGATGGTGAAGTTCCGACTCATGATGGCGAAGTTCCTACTTTTGGCAGCTCTGAAAGTTCCAGTTCATATGAATCATCTCCCACTGAAGAATCCAATGTGGATGAATCTATGGAATATCAGAGCTATGAAACATATTCAGAACTGTGA
Protein sequence

>MS.gene40789.t1

MDFQNRKARLFVIVAAIVALSITAEKCRELIGEEGSSQSGKFTLLNCFDMGSGTLACAVKEGVKLYFYSIRSTHVEKARQRAIESALVDAVSQGMPPTDAAKHAQKESKKAAKLASRQAKRIIGPIISSGWDFFEAIYYGGTITEGFLRGTGTLFGAYGGGFFGEQSLGRIGYLVGSHMGSWVGGRIGLMIYDVINGVHLLLEFVQTGEIEVRKTLVLENSDAPYTSFDGEVPTHDGEVPTFGSSESSSSYESSPTEESNVDESMEYQSYETYSEL