Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056331.t1 | XP_013456221.1 | 93.8 | 418 | 11 | 3 | 1 | 411 | 24 | 433 | 5.20E-177 | 630.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056331.t1 | Q9C690 | 44.1 | 417 | 160 | 15 | 2 | 406 | 22 | 377 | 1.4e-48 | 195.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056331.t1 | A0A072UKL1 | 93.8 | 418 | 11 | 3 | 1 | 411 | 24 | 433 | 3.8e-177 | 630.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene056331.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056331 | MS.gene54610 | 0.882177 | 1.30E-70 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene056331 | MS.gene041017 | PPI |
MS.gene056331 | MS.gene84970 | PPI |
MS.gene056331 | MS.gene95775 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056331.t1 | MTR_4g065870 | 93.062 | 418 | 14 | 3 | 1 | 411 | 24 | 433 | 0.0 | 759 |
MS.gene056331.t1 | MTR_4g065870 | 92.768 | 401 | 14 | 3 | 1 | 394 | 24 | 416 | 0.0 | 721 |
MS.gene056331.t1 | MTR_4g065870 | 92.328 | 378 | 14 | 3 | 1 | 371 | 24 | 393 | 0.0 | 673 |
MS.gene056331.t1 | MTR_2g098310 | 54.483 | 435 | 132 | 13 | 3 | 411 | 16 | 410 | 2.26e-147 | 424 |
MS.gene056331.t1 | MTR_2g098310 | 50.426 | 470 | 132 | 14 | 3 | 411 | 16 | 445 | 1.55e-139 | 406 |
MS.gene056331.t1 | MTR_2g098310 | 53.682 | 421 | 129 | 13 | 3 | 397 | 16 | 396 | 6.38e-138 | 400 |
MS.gene056331.t1 | MTR_2g098310 | 52.405 | 395 | 122 | 13 | 3 | 371 | 16 | 370 | 3.65e-122 | 360 |
MS.gene056331.t1 | MTR_2g098310 | 49.733 | 374 | 122 | 13 | 3 | 350 | 16 | 349 | 1.05e-104 | 314 |
MS.gene056331.t1 | MTR_1g052470 | 49.807 | 259 | 111 | 7 | 159 | 409 | 127 | 374 | 5.46e-73 | 233 |
MS.gene056331.t1 | MTR_3g028520 | 35.068 | 442 | 185 | 16 | 2 | 411 | 30 | 401 | 5.04e-52 | 179 |
MS.gene056331.t1 | MTR_3g027650 | 35.068 | 442 | 185 | 16 | 2 | 411 | 30 | 401 | 5.04e-52 | 179 |
MS.gene056331.t1 | MTR_7g092540 | 39.847 | 261 | 128 | 3 | 152 | 409 | 85 | 319 | 1.25e-49 | 171 |
MS.gene056331.t1 | MTR_3g027650 | 34.642 | 433 | 181 | 16 | 2 | 403 | 30 | 391 | 1.10e-46 | 165 |
MS.gene056331.t1 | MTR_7g092540 | 39.113 | 248 | 122 | 3 | 152 | 396 | 85 | 306 | 6.68e-44 | 155 |
MS.gene056331.t1 | MTR_8g036235 | 39.245 | 265 | 115 | 11 | 159 | 406 | 154 | 389 | 2.17e-40 | 148 |
MS.gene056331.t1 | MTR_1g116790 | 62.617 | 107 | 39 | 1 | 303 | 409 | 236 | 341 | 1.99e-37 | 139 |
MS.gene056331.t1 | MTR_4g033295 | 70.455 | 88 | 24 | 1 | 319 | 406 | 106 | 191 | 2.09e-37 | 134 |
MS.gene056331.t1 | MTR_1g052470 | 41.667 | 204 | 100 | 7 | 155 | 350 | 123 | 315 | 8.09e-37 | 136 |
MS.gene056331.t1 | MTR_4g033295 | 74.359 | 78 | 18 | 1 | 319 | 396 | 106 | 181 | 1.04e-33 | 124 |
MS.gene056331.t1 | MTR_3g027650 | 32.570 | 393 | 180 | 15 | 2 | 371 | 30 | 360 | 2.07e-32 | 125 |
MS.gene056331.t1 | MTR_8g036235 | 36.522 | 230 | 100 | 11 | 159 | 371 | 154 | 354 | 1.65e-23 | 101 |
MS.gene056331.t1 | MTR_4g033295 | 79.245 | 53 | 9 | 1 | 319 | 371 | 106 | 156 | 2.43e-21 | 91.3 |
MS.gene056331.t1 | MTR_6g052280 | 57.971 | 69 | 29 | 0 | 303 | 371 | 24 | 92 | 2.70e-21 | 89.4 |
MS.gene056331.t1 | MTR_3g498825 | 61.538 | 65 | 25 | 0 | 333 | 397 | 147 | 211 | 7.71e-17 | 81.3 |
MS.gene056331.t1 | MTR_4g131160 | 56.522 | 69 | 29 | 1 | 332 | 400 | 198 | 265 | 1.35e-16 | 81.3 |
MS.gene056331.t1 | MTR_4g131160 | 56.522 | 69 | 29 | 1 | 332 | 400 | 195 | 262 | 1.35e-16 | 81.3 |
MS.gene056331.t1 | MTR_1g017350 | 56.716 | 67 | 29 | 0 | 331 | 397 | 258 | 324 | 4.97e-16 | 79.7 |
MS.gene056331.t1 | MTR_1g017350 | 56.716 | 67 | 29 | 0 | 331 | 397 | 258 | 324 | 5.18e-16 | 79.7 |
MS.gene056331.t1 | MTR_1g017350 | 56.716 | 67 | 29 | 0 | 331 | 397 | 258 | 324 | 5.40e-16 | 79.7 |
MS.gene056331.t1 | MTR_1g017350 | 56.716 | 67 | 29 | 0 | 331 | 397 | 258 | 324 | 5.68e-16 | 79.7 |
MS.gene056331.t1 | MTR_3g116770 | 58.462 | 65 | 27 | 0 | 333 | 397 | 191 | 255 | 1.63e-15 | 78.2 |
MS.gene056331.t1 | MTR_3g116770 | 58.462 | 65 | 27 | 0 | 333 | 397 | 191 | 255 | 1.73e-15 | 78.2 |
MS.gene056331.t1 | MTR_8g012290 | 58.462 | 65 | 27 | 0 | 333 | 397 | 291 | 355 | 1.88e-15 | 78.6 |
MS.gene056331.t1 | MTR_8g012290 | 58.462 | 65 | 27 | 0 | 333 | 397 | 291 | 355 | 1.94e-15 | 78.6 |
MS.gene056331.t1 | MTR_7g053410 | 58.462 | 65 | 27 | 0 | 333 | 397 | 317 | 381 | 2.18e-15 | 78.2 |
MS.gene056331.t1 | MTR_7g053410 | 58.462 | 65 | 27 | 0 | 333 | 397 | 317 | 381 | 2.30e-15 | 78.2 |
MS.gene056331.t1 | MTR_8g065740 | 58.462 | 65 | 27 | 0 | 333 | 397 | 305 | 369 | 2.32e-15 | 78.2 |
MS.gene056331.t1 | MTR_1g080890 | 53.623 | 69 | 31 | 1 | 332 | 400 | 192 | 259 | 4.94e-15 | 76.3 |
MS.gene056331.t1 | MTR_8g099880 | 56.923 | 65 | 28 | 0 | 333 | 397 | 145 | 209 | 6.35e-15 | 75.9 |
MS.gene056331.t1 | MTR_4g070320 | 56.923 | 65 | 28 | 0 | 333 | 397 | 143 | 207 | 7.34e-15 | 75.9 |
MS.gene056331.t1 | MTR_5g048860 | 56.923 | 65 | 28 | 0 | 333 | 397 | 365 | 429 | 1.01e-14 | 76.3 |
MS.gene056331.t1 | MTR_8g062240 | 55.385 | 65 | 29 | 0 | 333 | 397 | 151 | 215 | 1.84e-14 | 73.6 |
MS.gene056331.t1 | MTR_5g037250 | 53.846 | 65 | 30 | 0 | 333 | 397 | 112 | 176 | 5.94e-14 | 71.6 |
MS.gene056331.t1 | MTR_3g103030 | 53.030 | 66 | 30 | 1 | 332 | 397 | 228 | 292 | 8.21e-12 | 66.2 |
MS.gene056331.t1 | MTR_1g059270 | 46.154 | 65 | 35 | 0 | 333 | 397 | 160 | 224 | 1.13e-11 | 65.1 |
MS.gene056331.t1 | MTR_1g059270 | 44.776 | 67 | 37 | 0 | 331 | 397 | 158 | 224 | 1.26e-11 | 65.9 |
MS.gene056331.t1 | MTR_1g018090 | 53.030 | 66 | 30 | 1 | 332 | 397 | 273 | 337 | 1.38e-11 | 65.9 |
MS.gene056331.t1 | MTR_7g092510 | 46.269 | 67 | 36 | 0 | 331 | 397 | 171 | 237 | 1.98e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056331.t1 | AT1G51140 | 39.858 | 424 | 168 | 19 | 2 | 406 | 22 | 377 | 1.21e-68 | 222 |
MS.gene056331.t1 | AT2G42280 | 43.346 | 263 | 119 | 6 | 152 | 411 | 122 | 357 | 1.90e-59 | 197 |
MS.gene056331.t1 | AT2G42280 | 42.915 | 247 | 111 | 6 | 152 | 395 | 122 | 341 | 1.04e-51 | 177 |
MS.gene056331.t1 | AT1G35460 | 67.816 | 87 | 28 | 0 | 325 | 411 | 173 | 259 | 6.22e-39 | 140 |
MS.gene056331.t1 | AT2G43140 | 63.462 | 104 | 37 | 1 | 303 | 405 | 103 | 206 | 6.91e-39 | 139 |
MS.gene056331.t1 | AT2G43140 | 63.462 | 104 | 37 | 1 | 303 | 405 | 200 | 303 | 4.08e-38 | 140 |
MS.gene056331.t1 | AT1G05805 | 62.500 | 104 | 37 | 2 | 303 | 405 | 253 | 355 | 1.83e-37 | 139 |
MS.gene056331.t1 | AT4G09180 | 68.235 | 85 | 27 | 0 | 327 | 411 | 178 | 262 | 6.00e-36 | 133 |
MS.gene056331.t1 | AT2G42280 | 34.158 | 202 | 103 | 7 | 152 | 350 | 122 | 296 | 8.14e-23 | 98.2 |
MS.gene056331.t1 | AT1G35460 | 82.979 | 47 | 8 | 0 | 325 | 371 | 173 | 219 | 3.18e-22 | 94.7 |
MS.gene056331.t1 | AT2G24260 | 57.971 | 69 | 28 | 1 | 332 | 400 | 34 | 101 | 1.63e-17 | 82.0 |
MS.gene056331.t1 | AT2G24260 | 53.165 | 79 | 36 | 1 | 332 | 410 | 137 | 214 | 5.53e-17 | 82.0 |
MS.gene056331.t1 | AT4G34530 | 49.425 | 87 | 42 | 1 | 311 | 397 | 152 | 236 | 8.82e-17 | 81.3 |
MS.gene056331.t1 | AT5G58010 | 55.072 | 69 | 30 | 1 | 332 | 400 | 98 | 165 | 9.60e-17 | 80.9 |
MS.gene056331.t1 | AT4G30980 | 56.522 | 69 | 29 | 1 | 332 | 400 | 129 | 196 | 1.22e-16 | 80.5 |
MS.gene056331.t1 | AT5G50915 | 60.000 | 65 | 26 | 0 | 333 | 397 | 136 | 200 | 1.94e-16 | 79.3 |
MS.gene056331.t1 | AT5G50915 | 60.000 | 65 | 26 | 0 | 333 | 397 | 136 | 200 | 1.94e-16 | 79.3 |
MS.gene056331.t1 | AT4G30980 | 56.522 | 69 | 29 | 1 | 332 | 400 | 177 | 244 | 2.05e-16 | 80.5 |
MS.gene056331.t1 | AT5G50915 | 60.000 | 65 | 26 | 0 | 333 | 397 | 136 | 200 | 2.60e-16 | 79.3 |
MS.gene056331.t1 | AT5G50915 | 60.000 | 65 | 26 | 0 | 333 | 397 | 136 | 200 | 2.60e-16 | 79.3 |
MS.gene056331.t1 | AT1G25330 | 55.385 | 65 | 29 | 0 | 333 | 397 | 104 | 168 | 3.01e-16 | 77.8 |
MS.gene056331.t1 | AT1G68920 | 58.462 | 65 | 27 | 0 | 333 | 397 | 302 | 366 | 1.03e-15 | 79.3 |
MS.gene056331.t1 | AT1G68920 | 58.462 | 65 | 27 | 0 | 333 | 397 | 303 | 367 | 1.06e-15 | 79.3 |
MS.gene056331.t1 | AT1G68920 | 58.462 | 65 | 27 | 0 | 333 | 397 | 303 | 367 | 1.06e-15 | 79.3 |
MS.gene056331.t1 | AT1G68920 | 58.462 | 65 | 27 | 0 | 333 | 397 | 303 | 367 | 1.06e-15 | 79.3 |
MS.gene056331.t1 | AT1G26260 | 58.462 | 65 | 27 | 0 | 333 | 397 | 201 | 265 | 1.34e-15 | 78.2 |
MS.gene056331.t1 | AT1G26260 | 58.462 | 65 | 27 | 0 | 333 | 397 | 223 | 287 | 1.51e-15 | 78.2 |
MS.gene056331.t1 | AT1G26260 | 58.462 | 65 | 27 | 0 | 333 | 397 | 223 | 287 | 1.51e-15 | 78.2 |
MS.gene056331.t1 | AT1G26260 | 58.462 | 65 | 27 | 0 | 333 | 397 | 223 | 287 | 1.51e-15 | 78.2 |
MS.gene056331.t1 | AT1G26260 | 58.462 | 65 | 27 | 0 | 333 | 397 | 223 | 287 | 1.51e-15 | 78.2 |
MS.gene056331.t1 | AT1G26260 | 58.462 | 65 | 27 | 0 | 333 | 397 | 172 | 236 | 1.70e-15 | 77.4 |
MS.gene056331.t1 | AT3G07340 | 58.462 | 65 | 27 | 0 | 333 | 397 | 258 | 322 | 2.17e-15 | 78.2 |
MS.gene056331.t1 | AT1G10120 | 58.462 | 65 | 27 | 0 | 333 | 397 | 206 | 270 | 2.20e-15 | 77.4 |
MS.gene056331.t1 | AT1G10120 | 58.462 | 65 | 27 | 0 | 333 | 397 | 206 | 270 | 2.20e-15 | 77.4 |
MS.gene056331.t1 | AT3G07340 | 58.462 | 65 | 27 | 0 | 333 | 397 | 258 | 322 | 2.61e-15 | 77.8 |
MS.gene056331.t1 | AT1G18400 | 53.731 | 67 | 31 | 0 | 331 | 397 | 143 | 209 | 3.81e-15 | 75.1 |
MS.gene056331.t1 | AT1G73830 | 55.385 | 65 | 29 | 0 | 333 | 397 | 147 | 211 | 3.97e-15 | 75.5 |
MS.gene056331.t1 | AT1G73830 | 55.385 | 65 | 29 | 0 | 333 | 397 | 147 | 211 | 4.26e-15 | 75.5 |
MS.gene056331.t1 | AT1G18400 | 53.731 | 67 | 31 | 0 | 331 | 397 | 143 | 209 | 5.80e-15 | 74.7 |
MS.gene056331.t1 | AT5G48560 | 56.923 | 65 | 28 | 0 | 333 | 397 | 301 | 365 | 7.11e-15 | 76.6 |
MS.gene056331.t1 | AT5G48560 | 56.923 | 65 | 28 | 0 | 333 | 397 | 301 | 365 | 7.99e-15 | 76.6 |
MS.gene056331.t1 | AT1G59640 | 55.385 | 65 | 29 | 0 | 333 | 397 | 136 | 200 | 2.98e-14 | 72.8 |
MS.gene056331.t1 | AT3G23690 | 55.385 | 65 | 29 | 0 | 333 | 397 | 191 | 255 | 4.75e-14 | 73.6 |
MS.gene056331.t1 | AT1G59640 | 55.385 | 65 | 29 | 0 | 333 | 397 | 136 | 200 | 1.29e-13 | 72.0 |
MS.gene056331.t1 | AT2G18300 | 52.308 | 65 | 31 | 0 | 333 | 397 | 185 | 249 | 2.05e-13 | 71.2 |
MS.gene056331.t1 | AT2G18300 | 52.308 | 65 | 31 | 0 | 333 | 397 | 185 | 249 | 2.06e-13 | 71.2 |
MS.gene056331.t1 | AT4G36540 | 52.308 | 65 | 31 | 0 | 333 | 397 | 141 | 205 | 2.76e-13 | 70.5 |
MS.gene056331.t1 | AT4G36540 | 52.308 | 65 | 31 | 0 | 333 | 397 | 141 | 205 | 2.79e-13 | 70.5 |
MS.gene056331.t1 | AT2G18300 | 52.308 | 65 | 31 | 0 | 333 | 397 | 185 | 249 | 2.94e-13 | 71.2 |
MS.gene056331.t1 | AT2G42300 | 49.315 | 73 | 36 | 1 | 326 | 397 | 177 | 249 | 3.28e-13 | 70.1 |
MS.gene056331.t1 | AT2G42300 | 49.315 | 73 | 36 | 1 | 326 | 397 | 177 | 249 | 3.36e-13 | 70.5 |
MS.gene056331.t1 | AT3G57800 | 49.254 | 67 | 34 | 0 | 331 | 397 | 202 | 268 | 1.92e-12 | 68.6 |
MS.gene056331.t1 | AT5G62610 | 50.769 | 65 | 32 | 0 | 333 | 397 | 153 | 217 | 2.58e-12 | 67.4 |
MS.gene056331.t1 | AT5G62610 | 50.769 | 65 | 32 | 0 | 333 | 397 | 153 | 217 | 2.58e-12 | 67.4 |
MS.gene056331.t1 | AT1G27740 | 51.429 | 70 | 33 | 1 | 328 | 397 | 162 | 230 | 7.81e-12 | 65.5 |
MS.gene056331.t1 | AT4G33880 | 53.030 | 66 | 30 | 1 | 332 | 397 | 265 | 329 | 1.19e-11 | 66.2 |
MS.gene056331.t1 | AT2G14760 | 51.471 | 68 | 32 | 1 | 332 | 399 | 236 | 302 | 1.56e-11 | 65.5 |
Find 85 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCCTTTCTGCGATGCTTCT+TGG | 0.204939 | 4.1:+34971371 | None:intergenic |
GCCAATTCGGCCGTAGTATT+TGG | 0.246472 | 4.1:+34971470 | None:intergenic |
CATCAGCAACAAATGAATTC+AGG | 0.254682 | 4.1:-34973398 | None:intergenic |
AGTAATAATATGAGTAATTA+TGG | 0.267441 | 4.1:-34973011 | MS.gene056331:CDS |
CCCTTTCTGCGATGCTTCTT+GGG | 0.281243 | 4.1:+34971372 | None:intergenic |
CCAGACTACTTCTGCTCCTT+TGG | 0.303630 | 4.1:-34971510 | MS.gene056331:CDS |
TCAACTACTGAATCAGTTAT+AGG | 0.313043 | 4.1:+34973173 | None:intergenic |
ATCTTTACCTTATCCATGTT+TGG | 0.314679 | 4.1:+34970799 | None:intergenic |
CTTCTCAATGGCTGCCAATT+CGG | 0.320940 | 4.1:+34971457 | None:intergenic |
CGGGTTTCAGCAAAACCTTC+AGG | 0.325691 | 4.1:+34971953 | None:intergenic |
GCCAAATACTACGGCCGAAT+TGG | 0.337775 | 4.1:-34971471 | MS.gene056331:CDS |
ATGATATCTGATAATATTAC+TGG | 0.350123 | 4.1:-34971875 | MS.gene056331:CDS |
CCTAACGGTGAGGCATAGTT+TGG | 0.353263 | 4.1:+34972019 | None:intergenic |
CTTTCTGTTTCAGGACTTGA+AGG | 0.354030 | 4.1:+34973293 | None:intergenic |
TTTGCTGCTATGAGAGGAAT+AGG | 0.354357 | 4.1:-34972115 | MS.gene056331:CDS |
TATGAGAGGAATAGGAACTA+TGG | 0.359228 | 4.1:-34972107 | MS.gene056331:CDS |
GGTGGTAGTGGTGGTGGTGG+TGG | 0.363507 | 4.1:-34973233 | MS.gene056331:CDS |
GGATTTAAACCTGGAGGAAA+TGG | 0.364210 | 4.1:+34971818 | None:intergenic |
TCAAACATTAACATTGATAC+TGG | 0.367647 | 4.1:-34972870 | MS.gene056331:intron |
TCAACCTCTTCCTTAACTAT+AGG | 0.381573 | 4.1:+34973107 | None:intergenic |
TTTATCCCGGGTTTCCCCTT+AGG | 0.384096 | 4.1:-34971920 | MS.gene056331:CDS |
TCACACAAGCAACAGCAATA+AGG | 0.392323 | 4.1:-34970295 | None:intergenic |
GGAAGTGGTGGTAGTGGTGG+TGG | 0.399180 | 4.1:-34973239 | MS.gene056331:CDS |
CGACCGGTCTTCATTTGATT+CGG | 0.402592 | 4.1:+34972936 | None:intergenic |
TTTAAATCCAGCTGAAACTA+AGG | 0.405121 | 4.1:-34971804 | MS.gene056331:intron |
CACACAAGCAACAGCAATAA+GGG | 0.405182 | 4.1:-34970294 | None:intergenic |
TCACCGTTAGGAGCTGAAAT+CGG | 0.415027 | 4.1:-34972007 | MS.gene056331:CDS |
CCAAAGGAGCAGAAGTAGTC+TGG | 0.416991 | 4.1:+34971510 | None:intergenic |
CCCAAGAAGCATCGCAGAAA+GGG | 0.421337 | 4.1:-34971372 | MS.gene056331:intron |
TCAACTACCTTAGTTTCAGC+TGG | 0.426767 | 4.1:+34971797 | None:intergenic |
TGCATTGATCAGAATGAAAC+AGG | 0.428524 | 4.1:-34971536 | MS.gene056331:intron |
GCAACAGCTTCCTATAGTTA+AGG | 0.446191 | 4.1:-34973117 | MS.gene056331:CDS |
AGTGGTGGTAGTGGTGGTGG+TGG | 0.447971 | 4.1:-34973236 | MS.gene056331:CDS |
CACCGTTAGGAGCTGAAATC+GGG | 0.453811 | 4.1:-34972006 | MS.gene056331:CDS |
ATCCTCCCATGTAGTACCTA+AGG | 0.461462 | 4.1:+34971904 | None:intergenic |
CCAAACTATGCCTCACCGTT+AGG | 0.468050 | 4.1:-34972019 | MS.gene056331:CDS |
ATGAATAGTCTTAGTGGAAG+TGG | 0.476450 | 4.1:-34973254 | MS.gene056331:CDS |
AAGGTGGTCTTCCTGAACTT+TGG | 0.484772 | 4.1:+34972961 | None:intergenic |
ATCAGCAACAAATGAATTCA+GGG | 0.496532 | 4.1:-34973397 | None:intergenic |
GTTTCCCCTTAGGTACTACA+TGG | 0.505709 | 4.1:-34971910 | MS.gene056331:CDS |
CTAAAATTAGCGAGCGAATG+AGG | 0.505851 | 4.1:-34970840 | MS.gene056331:CDS |
AGTGGAAGTGGTGGTAGTGG+TGG | 0.511352 | 4.1:-34973242 | MS.gene056331:CDS |
GTTTCAGCTGGATTTAAACC+TGG | 0.516134 | 4.1:+34971809 | None:intergenic |
CTTAGTGGAAGTGGTGGTAG+TGG | 0.518560 | 4.1:-34973245 | MS.gene056331:CDS |
TTCATTTGATTCGGCAAAGG+TGG | 0.519821 | 4.1:+34972945 | None:intergenic |
TGCGATGCTTCTTGGGTGAG+TGG | 0.520586 | 4.1:+34971379 | None:intergenic |
AGGTTTATGAATAGTCTTAG+TGG | 0.525192 | 4.1:-34973260 | MS.gene056331:CDS |
TCTCGTGCCAAACATGGATA+AGG | 0.525796 | 4.1:-34970806 | MS.gene056331:intron |
CACATCAGACATGTTGGACT+TGG | 0.527533 | 4.1:-34970679 | MS.gene056331:CDS |
GATGTAAAACCATTTCCTCC+AGG | 0.529045 | 4.1:-34971827 | MS.gene056331:CDS |
AGACATGGCAGTTCACCTGC+TGG | 0.529643 | 4.1:-34972900 | MS.gene056331:CDS |
ACCCAAGAAGCATCGCAGAA+AGG | 0.530358 | 4.1:-34971373 | MS.gene056331:CDS |
GTCTTCATTTGATTCGGCAA+AGG | 0.532649 | 4.1:+34972942 | None:intergenic |
GCTTCCTATAGTTAAGGAAG+AGG | 0.542479 | 4.1:-34973111 | MS.gene056331:CDS |
CGAGCGAATGAGGAAACTAC+AGG | 0.543755 | 4.1:-34970830 | MS.gene056331:CDS |
AACAAACACATCAGACATGT+TGG | 0.549768 | 4.1:-34970685 | MS.gene056331:CDS |
ATGAGAGGAATAGGAACTAT+GGG | 0.549779 | 4.1:-34972106 | MS.gene056331:CDS |
TGTTTGTACATACCTCAACT+TGG | 0.553379 | 4.1:+34970628 | None:intergenic |
ATGTTTGAAAACAATCCAGC+AGG | 0.553542 | 4.1:+34972885 | None:intergenic |
CTCCCGATTTCAGCTCCTAA+CGG | 0.555564 | 4.1:+34972004 | None:intergenic |
TCCTCCCATGTAGTACCTAA+GGG | 0.558794 | 4.1:+34971905 | None:intergenic |
CGGGATAAAATCGTTACCCC+GGG | 0.559844 | 4.1:+34971934 | None:intergenic |
CAAAACAATCTTGAACCTGA+AGG | 0.566426 | 4.1:-34971968 | MS.gene056331:CDS |
CGGTCTAGTCTTATTAGACA+TGG | 0.571581 | 4.1:-34972915 | MS.gene056331:CDS |
ACAGGATCTCGTGCCAAACA+TGG | 0.576148 | 4.1:-34970812 | MS.gene056331:CDS |
GTAGTACCTAAGGGGAAACC+CGG | 0.587146 | 4.1:+34971914 | None:intergenic |
AAATGAATTCAGGGTTAACA+CGG | 0.591208 | 4.1:-34973388 | MS.gene056331:CDS |
TGGCACAGCCTCGTTTAGCA+CGG | 0.591219 | 4.1:+34971399 | None:intergenic |
TGCAAAATCCGTGCTAAACG+AGG | 0.592385 | 4.1:-34971407 | MS.gene056331:CDS |
CCGGGATAAAATCGTTACCC+CGG | 0.596209 | 4.1:+34971933 | None:intergenic |
AATGAATAACAATGAATCTG+TGG | 0.596436 | 4.1:-34973060 | MS.gene056331:CDS |
CCCCTTAGGTACTACATGGG+AGG | 0.597480 | 4.1:-34971906 | MS.gene056331:CDS |
GATGAGTATGCCAAATACTA+CGG | 0.608721 | 4.1:-34971480 | MS.gene056331:CDS |
ATACTCATCTGATGAGCCAA+AGG | 0.612846 | 4.1:+34971494 | None:intergenic |
TCTAATAAGACTAGACCGAC+CGG | 0.616887 | 4.1:+34972920 | None:intergenic |
TTGCCGAATCAAATGAAGAC+CGG | 0.622612 | 4.1:-34972939 | MS.gene056331:CDS |
AATAGTCTTAGTGGAAGTGG+TGG | 0.627049 | 4.1:-34973251 | MS.gene056331:CDS |
TCAGCTGGATTTAAACCTGG+AGG | 0.642939 | 4.1:+34971812 | None:intergenic |
CGAATCAAATGAAGACCGGT+CGG | 0.663039 | 4.1:-34972935 | MS.gene056331:CDS |
CCTCCCATGTAGTACCTAAG+GGG | 0.665348 | 4.1:+34971906 | None:intergenic |
TTTCCCCTTAGGTACTACAT+GGG | 0.669210 | 4.1:-34971909 | MS.gene056331:CDS |
TAGTACCTAAGGGGAAACCC+GGG | 0.682720 | 4.1:+34971915 | None:intergenic |
ATTGATCAGAATGAAACAGG+AGG | 0.687350 | 4.1:-34971533 | MS.gene056331:intron |
AGACCTACAAAACCAAGTTG+AGG | 0.687966 | 4.1:-34970640 | MS.gene056331:intron |
GATTTCAGCTCCTAACGGTG+AGG | 0.706801 | 4.1:+34972009 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTAATAATATGAGTAATTA+TGG | - | chr4.1:34970672-34970691 | MS.gene056331:CDS | 15.0% |
!! | ATATTTGAAAAATATGAACT+TGG | + | chr4.1:34970333-34970352 | None:intergenic | 15.0% |
!! | TAACAATTGAATAAAAATCT+CGG | + | chr4.1:34972630-34972649 | None:intergenic | 15.0% |
!! | TAATGATGTATGAATAATTA+TGG | + | chr4.1:34973129-34973148 | None:intergenic | 15.0% |
!!! | TTATTCAATTGTTACTTTAT+CGG | - | chr4.1:34972636-34972655 | MS.gene056331:intron | 15.0% |
!! | AAGTTAATTAGAAATCCAAT+AGG | - | chr4.1:34971466-34971485 | MS.gene056331:CDS | 20.0% |
!! | AAGTTGTTTATAAGTATGAT+CGG | + | chr4.1:34973197-34973216 | None:intergenic | 20.0% |
!! | ATAATTCAAAGTAGTTATGT+AGG | + | chr4.1:34972934-34972953 | None:intergenic | 20.0% |
!! | ATGATATCTGATAATATTAC+TGG | - | chr4.1:34971808-34971827 | MS.gene056331:CDS | 20.0% |
!! | ATTAAATAAGTGATGTATCT+AGG | + | chr4.1:34973252-34973233 | None:intergenic | 20.0% |
!! | TACATAACTACTTTGAATTA+TGG | - | chr4.1:34972933-34972952 | MS.gene056331:CDS | 20.0% |
!!! | ATTTACATTTTGTGCATATT+TGG | + | chr4.1:34971147-34971166 | None:intergenic | 20.0% |
!!! | TCATTTTCTTGATCATAAAT+AGG | - | chr4.1:34971509-34971528 | MS.gene056331:CDS | 20.0% |
!!! | TGTAGTTTTTATCAAAATCA+CGG | - | chr4.1:34971086-34971105 | MS.gene056331:intron | 20.0% |
!!! | TTGACTAGTTGATAAATAAT+AGG | - | chr4.1:34972595-34972614 | MS.gene056331:intron | 20.0% |
! | AAAAAGTGAGAAACAATGTT+TGG | + | chr4.1:34972972-34972991 | None:intergenic | 25.0% |
! | AATGAATAACAATGAATCTG+TGG | - | chr4.1:34970623-34970642 | MS.gene056331:intron | 25.0% |
! | ACCATGTAAAACAAAGAAAA+AGG | + | chr4.1:34970953-34970972 | None:intergenic | 25.0% |
! | ATAACAAAGTAAAGCTACTT+AGG | + | chr4.1:34970978-34970997 | None:intergenic | 25.0% |
! | CCATGTAAAACAAAGAAAAA+GGG | + | chr4.1:34970952-34970971 | None:intergenic | 25.0% |
! | CTGAAAATAAATTCACACAA+AGG | + | chr4.1:34972813-34972832 | None:intergenic | 25.0% |
! | GCAATAAATAGTAAACCTAT+TGG | + | chr4.1:34971484-34971503 | None:intergenic | 25.0% |
! | GTTCCTTACTAAAATTATGA+TGG | + | chr4.1:34971193-34971212 | None:intergenic | 25.0% |
! | TCAAACATTAACATTGATAC+TGG | - | chr4.1:34970813-34970832 | MS.gene056331:CDS | 25.0% |
! | TCATGATAAGAAAAAGAGTA+TGG | + | chr4.1:34970846-34970865 | None:intergenic | 25.0% |
! | TGAATTGTACTATCAGAATT+TGG | - | chr4.1:34971906-34971925 | MS.gene056331:CDS | 25.0% |
! | TTATAAATTCTGCTACACTT+CGG | + | chr4.1:34972045-34972064 | None:intergenic | 25.0% |
!! | CTTACTAAAATTATGATGGA+TGG | + | chr4.1:34971189-34971208 | None:intergenic | 25.0% |
!! | TCATAACAAAATGACTTTTC+TGG | + | chr4.1:34972505-34972524 | None:intergenic | 25.0% |
!! | TTCAACAGTTAATTTGAAGT+CGG | - | chr4.1:34972736-34972755 | MS.gene056331:intron | 25.0% |
!!! | AAACAATGTTTGGTTTGTTA+AGG | + | chr4.1:34972962-34972981 | None:intergenic | 25.0% |
!!! | AATGGAAATAGGTATTGAAA+AGG | + | chr4.1:34970911-34970930 | None:intergenic | 25.0% |
!!! | ATGGAAATAGGTATTGAAAA+GGG | + | chr4.1:34970910-34970929 | None:intergenic | 25.0% |
!!! | CATCCATCATAATTTTAGTA+AGG | - | chr4.1:34971187-34971206 | MS.gene056331:intron | 25.0% |
!!! | CTTTGTGTGAATTTATTTTC+AGG | - | chr4.1:34972811-34972830 | MS.gene056331:intron | 25.0% |
!!! | GTGACTTTTTTAAATAACTC+CGG | - | chr4.1:34971019-34971038 | MS.gene056331:intron | 25.0% |
AAAAAAGAGGCAATGGAAAT+AGG | + | chr4.1:34970922-34970941 | None:intergenic | 30.0% | |
AATAAATTCACACAAAGGTG+AGG | + | chr4.1:34972808-34972827 | None:intergenic | 30.0% | |
AGAGGACTTGATTTAAATCT+AGG | - | chr4.1:34971367-34971386 | MS.gene056331:intron | 30.0% | |
ATCTTTACCTTATCCATGTT+TGG | + | chr4.1:34972887-34972906 | None:intergenic | 30.0% | |
GAACTTTGGTAAAAATTCTG+AGG | + | chr4.1:34970711-34970730 | None:intergenic | 30.0% | |
TCAAACACTTATTCATGCTT+TGG | - | chr4.1:34972427-34972446 | MS.gene056331:intron | 30.0% | |
TCAACTACTGAATCAGTTAT+AGG | + | chr4.1:34970513-34970532 | None:intergenic | 30.0% | |
TGTTTATAAATGTGACCAGA+GGG | - | chr4.1:34973310-34973329 | MS.gene056331:CDS | 30.0% | |
TTCAAAGTAGTTATGTAGGT+TGG | + | chr4.1:34972930-34972949 | None:intergenic | 30.0% | |
TTGAATAAAAATCTCGGTTG+TGG | + | chr4.1:34972624-34972643 | None:intergenic | 30.0% | |
TTGTTTATAAATGTGACCAG+AGG | - | chr4.1:34973309-34973328 | MS.gene056331:CDS | 30.0% | |
TTGTTTATAAGTATGATCGG+AGG | + | chr4.1:34973194-34973213 | None:intergenic | 30.0% | |
TTTAAATCCAGCTGAAACTA+AGG | - | chr4.1:34971879-34971898 | MS.gene056331:CDS | 30.0% | |
! | AAACAGAAAGAGTTTTTGCA+AGG | - | chr4.1:34970403-34970422 | MS.gene056331:intron | 30.0% |
! | AGCAAATTTTTCTTCTTCTG+CGG | - | chr4.1:34971624-34971643 | MS.gene056331:intron | 30.0% |
! | AGGTTTATGAATAGTCTTAG+TGG | - | chr4.1:34970423-34970442 | MS.gene056331:intron | 30.0% |
! | AGTTTTTATCAAAATCACGG+TGG | - | chr4.1:34971089-34971108 | MS.gene056331:intron | 30.0% |
! | CAGAATTTTTACCAAAGTTC+AGG | - | chr4.1:34970711-34970730 | MS.gene056331:intron | 30.0% |
! | CATCATCTCTGTATCTTTTT+AGG | + | chr4.1:34971834-34971853 | None:intergenic | 30.0% |
! | TAATCTCAACTGTGAGTTTT+TGG | + | chr4.1:34972460-34972479 | None:intergenic | 30.0% |
! | TTGACAACACTGATTACATT+TGG | - | chr4.1:34972092-34972111 | MS.gene056331:CDS | 30.0% |
! | TTTTAAATAACTCCGGAATC+CGG | - | chr4.1:34971026-34971045 | MS.gene056331:intron | 30.0% |
!!! | AAGGTAAAGATTTTGACTTG+TGG | - | chr4.1:34972896-34972915 | MS.gene056331:CDS | 30.0% |
!!! | CCCTTTTTCTTTGTTTTACA+TGG | - | chr4.1:34970949-34970968 | MS.gene056331:intron | 30.0% |
AAAGGGAATCACGAAAAAAG+AGG | + | chr4.1:34970935-34970954 | None:intergenic | 35.0% | |
AACAAACACATCAGACATGT+TGG | - | chr4.1:34972998-34973017 | MS.gene056331:CDS | 35.0% | |
AATCACGAAAAAAGAGGCAA+TGG | + | chr4.1:34970929-34970948 | None:intergenic | 35.0% | |
ATCATCGTGTCAATCTAATC+CGG | + | chr4.1:34971048-34971067 | None:intergenic | 35.0% | |
ATGAGAGGAATAGGAACTAT+GGG | - | chr4.1:34971577-34971596 | MS.gene056331:intron | 35.0% | |
ATGTTTGAAAACAATCCAGC+AGG | + | chr4.1:34970801-34970820 | None:intergenic | 35.0% | |
ATTGATCAGAATGAAACAGG+AGG | - | chr4.1:34972150-34972169 | MS.gene056331:intron | 35.0% | |
CAAAACAATCTTGAACCTGA+AGG | - | chr4.1:34971715-34971734 | MS.gene056331:intron | 35.0% | |
GAACTGCAAAAACTTCTCAA+TGG | + | chr4.1:34972241-34972260 | None:intergenic | 35.0% | |
GATGAGTATGCCAAATACTA+CGG | - | chr4.1:34972203-34972222 | MS.gene056331:intron | 35.0% | |
GCAAAAACTCTTTCTGTTTC+AGG | + | chr4.1:34970402-34970421 | None:intergenic | 35.0% | |
GCTACTTGACCTAAAAAAAC+GGG | - | chr4.1:34971419-34971438 | MS.gene056331:CDS | 35.0% | |
GCTGGAAAATGAGAACATAA+TGG | - | chr4.1:34971282-34971301 | MS.gene056331:intron | 35.0% | |
GGCTACTTGACCTAAAAAAA+CGG | - | chr4.1:34971418-34971437 | MS.gene056331:CDS | 35.0% | |
TACAAAGTATATACTCCCTC+TGG | + | chr4.1:34973328-34973347 | None:intergenic | 35.0% | |
TAGAGAAGTGAGAATGAGAT+TGG | + | chr4.1:34973086-34973105 | None:intergenic | 35.0% | |
TATAATGATGCTAGCTAGCT+TGG | - | chr4.1:34971536-34971555 | MS.gene056331:intron | 35.0% | |
TATGAGAGGAATAGGAACTA+TGG | - | chr4.1:34971576-34971595 | MS.gene056331:intron | 35.0% | |
TATTAACGACTTCTGCAACA+AGG | + | chr4.1:34972671-34972690 | None:intergenic | 35.0% | |
TCAACCTCTTCCTTAACTAT+AGG | + | chr4.1:34970579-34970598 | None:intergenic | 35.0% | |
TGTTTGTACATACCTCAACT+TGG | + | chr4.1:34973058-34973077 | None:intergenic | 35.0% | |
! | ATGAATAGTCTTAGTGGAAG+TGG | - | chr4.1:34970429-34970448 | MS.gene056331:intron | 35.0% |
! | ATTTTTCTTCTTCTGCGGTA+CGG | - | chr4.1:34971629-34971648 | MS.gene056331:intron | 35.0% |
! | CATTTTCCAGCTAATTGGAT+CGG | + | chr4.1:34971273-34971292 | None:intergenic | 35.0% |
! | GTTCTCATTTTCCAGCTAAT+TGG | + | chr4.1:34971278-34971297 | None:intergenic | 35.0% |
! | TCATGAAAGTACAACTCAGT+TGG | - | chr4.1:34971321-34971340 | MS.gene056331:intron | 35.0% |
! | TGATTTTGCTGAATTCGTTG+TGG | - | chr4.1:34971119-34971138 | MS.gene056331:intron | 35.0% |
! | TGCATTGATCAGAATGAAAC+AGG | - | chr4.1:34972147-34972166 | MS.gene056331:intron | 35.0% |
!! | TCAGGTTCAAGATTGTTTTG+TGG | + | chr4.1:34971715-34971734 | None:intergenic | 35.0% |
!!! | ATACCTCAACTTGGTTTTGT+AGG | + | chr4.1:34973049-34973068 | None:intergenic | 35.0% |
!!! | TCACGAAATCCCGTTTTTTT+AGG | + | chr4.1:34971431-34971450 | None:intergenic | 35.0% |
AATTCACACAAAGGTGAGGA+AGG | + | chr4.1:34972804-34972823 | None:intergenic | 40.0% | |
AGACCTACAAAACCAAGTTG+AGG | - | chr4.1:34973043-34973062 | MS.gene056331:CDS | 40.0% | |
ATACTCATCTGATGAGCCAA+AGG | + | chr4.1:34972192-34972211 | None:intergenic | 40.0% | |
CGTGCAAGATTGTAAAGATG+TGG | + | chr4.1:34972570-34972589 | None:intergenic | 40.0% | |
CTAAAATTAGCGAGCGAATG+AGG | - | chr4.1:34972843-34972862 | MS.gene056331:intron | 40.0% | |
CTTTCTGTTTCAGGACTTGA+AGG | + | chr4.1:34970393-34970412 | None:intergenic | 40.0% | |
GATGTAAAACCATTTCCTCC+AGG | - | chr4.1:34971856-34971875 | MS.gene056331:CDS | 40.0% | |
GCAACAGCTTCCTATAGTTA+AGG | - | chr4.1:34970566-34970585 | MS.gene056331:intron | 40.0% | |
GCTTCCTATAGTTAAGGAAG+AGG | - | chr4.1:34970572-34970591 | MS.gene056331:intron | 40.0% | |
GGATTTAAACCTGGAGGAAA+TGG | + | chr4.1:34971868-34971887 | None:intergenic | 40.0% | |
GTTTCAGCTGGATTTAAACC+TGG | + | chr4.1:34971877-34971896 | None:intergenic | 40.0% | |
TCAACTACCTTAGTTTCAGC+TGG | + | chr4.1:34971889-34971908 | None:intergenic | 40.0% | |
TCTAATAAGACTAGACCGAC+CGG | + | chr4.1:34970766-34970785 | None:intergenic | 40.0% | |
TGTCAATCTAATCCGGATTC+CGG | + | chr4.1:34971041-34971060 | None:intergenic | 40.0% | |
TTGCCGAATCAAATGAAGAC+CGG | - | chr4.1:34970744-34970763 | MS.gene056331:intron | 40.0% | |
TTTCCCCTTAGGTACTACAT+GGG | - | chr4.1:34971774-34971793 | MS.gene056331:intron | 40.0% | |
TTTGCTGCTATGAGAGGAAT+AGG | - | chr4.1:34971568-34971587 | MS.gene056331:intron | 40.0% | |
! | AATAGTCTTAGTGGAAGTGG+TGG | - | chr4.1:34970432-34970451 | MS.gene056331:intron | 40.0% |
! | AGTAGAGCATTTGACAACAC+TGG | + | chr4.1:34971941-34971960 | None:intergenic | 40.0% |
! | GAAAGTACAACTCAGTTGGT+AGG | - | chr4.1:34971325-34971344 | MS.gene056331:intron | 40.0% |
! | TTTGTGCAGTGTTGTTAGTG+CGG | - | chr4.1:34972009-34972028 | MS.gene056331:CDS | 40.0% |
!! | CGGAGGAAGTATTTATCGAA+AGG | + | chr4.1:34973177-34973196 | None:intergenic | 40.0% |
!! | CGGTCTAGTCTTATTAGACA+TGG | - | chr4.1:34970768-34970787 | MS.gene056331:intron | 40.0% |
!! | GTCTTCATTTGATTCGGCAA+AGG | + | chr4.1:34970744-34970763 | None:intergenic | 40.0% |
!! | TTCATTTGATTCGGCAAAGG+TGG | + | chr4.1:34970741-34970760 | None:intergenic | 40.0% |
!! | TTTTAGGTCAAGTAGCCTAG+TGG | + | chr4.1:34971415-34971434 | None:intergenic | 40.0% |
AAGGTGGTCTTCCTGAACTT+TGG | + | chr4.1:34970725-34970744 | None:intergenic | 45.0% | |
AATTGGATCGGCAGTCAGTT+CGG | + | chr4.1:34971261-34971280 | None:intergenic | 45.0% | |
ATCCTCCCATGTAGTACCTA+AGG | + | chr4.1:34971782-34971801 | None:intergenic | 45.0% | |
CAAAGGTGAGGAAGGAGATT+TGG | + | chr4.1:34972796-34972815 | None:intergenic | 45.0% | |
CACATCAGACATGTTGGACT+TGG | - | chr4.1:34973004-34973023 | MS.gene056331:CDS | 45.0% | |
CGAATCAAATGAAGACCGGT+CGG | - | chr4.1:34970748-34970767 | MS.gene056331:intron | 45.0% | |
CGACCGGTCTTCATTTGATT+CGG | + | chr4.1:34970750-34970769 | None:intergenic | 45.0% | |
CTTCTCAATGGCTGCCAATT+CGG | + | chr4.1:34972229-34972248 | None:intergenic | 45.0% | |
GACTTCTGCAACAAGGAATC+TGG | + | chr4.1:34972664-34972683 | None:intergenic | 45.0% | |
GCAGGGACATTGATATACAG+AGG | - | chr4.1:34971349-34971368 | MS.gene056331:intron | 45.0% | |
GTTTCCCCTTAGGTACTACA+TGG | - | chr4.1:34971773-34971792 | MS.gene056331:intron | 45.0% | |
TCACCGTTAGGAGCTGAAAT+CGG | - | chr4.1:34971676-34971695 | MS.gene056331:intron | 45.0% | |
TCAGCTGGATTTAAACCTGG+AGG | + | chr4.1:34971874-34971893 | None:intergenic | 45.0% | |
TCCTCCCATGTAGTACCTAA+GGG | + | chr4.1:34971781-34971800 | None:intergenic | 45.0% | |
TCTCGTGCCAAACATGGATA+AGG | - | chr4.1:34972877-34972896 | MS.gene056331:CDS | 45.0% | |
TGCAAAATCCGTGCTAAACG+AGG | - | chr4.1:34972276-34972295 | MS.gene056331:intron | 45.0% | |
! | ATGATGCTAGCTAGCTTGGT+TGG | - | chr4.1:34971540-34971559 | MS.gene056331:intron | 45.0% |
! | CGTTTAGCACGGATTTTGCA+CGG | + | chr4.1:34972276-34972295 | None:intergenic | 45.0% |
! | CTGAAGGTTTTGCTGAAACC+CGG | - | chr4.1:34971731-34971750 | MS.gene056331:intron | 45.0% |
! | TGAAGGTTTTGCTGAAACCC+GGG | - | chr4.1:34971732-34971751 | MS.gene056331:intron | 45.0% |
!! | AATTTATAATAGAATTAAAA+TGG | + | chr4.1:34972340-34972359 | None:intergenic | 5.0% |
ACAGGATCTCGTGCCAAACA+TGG | - | chr4.1:34972871-34972890 | MS.gene056331:CDS | 50.0% | |
ACCCTTTCTGCGATGCTTCT+TGG | + | chr4.1:34972315-34972334 | None:intergenic | 50.0% | |
CACCGTTAGGAGCTGAAATC+GGG | - | chr4.1:34971677-34971696 | MS.gene056331:intron | 50.0% | |
CCAAACTATGCCTCACCGTT+AGG | - | chr4.1:34971664-34971683 | MS.gene056331:intron | 50.0% | |
CCAAAGGAGCAGAAGTAGTC+TGG | + | chr4.1:34972176-34972195 | None:intergenic | 50.0% | |
CCAGACTACTTCTGCTCCTT+TGG | - | chr4.1:34972173-34972192 | MS.gene056331:intron | 50.0% | |
CCCTTTCTGCGATGCTTCTT+GGG | + | chr4.1:34972314-34972333 | None:intergenic | 50.0% | |
CCGGGATAAAATCGTTACCC+CGG | + | chr4.1:34971753-34971772 | None:intergenic | 50.0% | |
CCTAACGGTGAGGCATAGTT+TGG | + | chr4.1:34971667-34971686 | None:intergenic | 50.0% | |
CCTCCCATGTAGTACCTAAG+GGG | + | chr4.1:34971780-34971799 | None:intergenic | 50.0% | |
CGAGCGAATGAGGAAACTAC+AGG | - | chr4.1:34972853-34972872 | MS.gene056331:intron | 50.0% | |
CGGGATAAAATCGTTACCCC+GGG | + | chr4.1:34971752-34971771 | None:intergenic | 50.0% | |
CGGGTTTCAGCAAAACCTTC+AGG | + | chr4.1:34971733-34971752 | None:intergenic | 50.0% | |
CTCCCGATTTCAGCTCCTAA+CGG | + | chr4.1:34971682-34971701 | None:intergenic | 50.0% | |
CTTAGTGGAAGTGGTGGTAG+TGG | - | chr4.1:34970438-34970457 | MS.gene056331:intron | 50.0% | |
GATTTCAGCTCCTAACGGTG+AGG | + | chr4.1:34971677-34971696 | None:intergenic | 50.0% | |
GCCAAATACTACGGCCGAAT+TGG | - | chr4.1:34972212-34972231 | MS.gene056331:intron | 50.0% | |
GCCAATTCGGCCGTAGTATT+TGG | + | chr4.1:34972216-34972235 | None:intergenic | 50.0% | |
GTAGTACCTAAGGGGAAACC+CGG | + | chr4.1:34971772-34971791 | None:intergenic | 50.0% | |
TAGTACCTAAGGGGAAACCC+GGG | + | chr4.1:34971771-34971790 | None:intergenic | 50.0% | |
TGACTGCCGATCCAATTAGC+TGG | - | chr4.1:34971264-34971283 | MS.gene056331:intron | 50.0% | |
TTTATCCCGGGTTTCCCCTT+AGG | - | chr4.1:34971763-34971782 | MS.gene056331:intron | 50.0% | |
! | CCGGGGTAACGATTTTATCC+CGG | - | chr4.1:34971750-34971769 | MS.gene056331:intron | 50.0% |
! | CGGGGTAACGATTTTATCCC+GGG | - | chr4.1:34971751-34971770 | MS.gene056331:intron | 50.0% |
! | GAAGGTTTTGCTGAAACCCG+GGG | - | chr4.1:34971733-34971752 | MS.gene056331:intron | 50.0% |
! | GCAGGTTTTGCTGCTATGAG+AGG | - | chr4.1:34971562-34971581 | MS.gene056331:intron | 50.0% |
!! | ACAACTCAGTTGGTAGGTGC+AGG | - | chr4.1:34971331-34971350 | MS.gene056331:intron | 50.0% |
!! | ACCCAAGAAGCATCGCAGAA+AGG | - | chr4.1:34972310-34972329 | MS.gene056331:intron | 50.0% |
!! | CAACTCAGTTGGTAGGTGCA+GGG | - | chr4.1:34971332-34971351 | MS.gene056331:intron | 50.0% |
!! | CCCAAGAAGCATCGCAGAAA+GGG | - | chr4.1:34972311-34972330 | MS.gene056331:intron | 50.0% |
AGACATGGCAGTTCACCTGC+TGG | - | chr4.1:34970783-34970802 | MS.gene056331:intron | 55.0% | |
AGGTCAAGTAGCCTAGTGGC+AGG | + | chr4.1:34971411-34971430 | None:intergenic | 55.0% | |
CCCCTTAGGTACTACATGGG+AGG | - | chr4.1:34971777-34971796 | MS.gene056331:intron | 55.0% | |
TGCGATGCTTCTTGGGTGAG+TGG | + | chr4.1:34972307-34972326 | None:intergenic | 55.0% | |
TGGCACAGCCTCGTTTAGCA+CGG | + | chr4.1:34972287-34972306 | None:intergenic | 55.0% | |
! | TGCTAGCTAGCTTGGTTGGC+AGG | - | chr4.1:34971544-34971563 | MS.gene056331:intron | 55.0% |
!! | AGTGGAAGTGGTGGTAGTGG+TGG | - | chr4.1:34970441-34970460 | MS.gene056331:intron | 55.0% |
AAGTAGCCTAGTGGCAGGCG+TGG | + | chr4.1:34971406-34971425 | None:intergenic | 60.0% | |
ACTTCTCCACGCCTGCCACT+AGG | - | chr4.1:34971397-34971416 | MS.gene056331:CDS | 60.0% | |
TAGTGGCAGGCGTGGAGAAG+TGG | + | chr4.1:34971398-34971417 | None:intergenic | 60.0% | |
!! | AGTGGTGGTAGTGGTGGTGG+TGG | - | chr4.1:34970447-34970466 | MS.gene056331:intron | 60.0% |
!! | GGAAGTGGTGGTAGTGGTGG+TGG | - | chr4.1:34970444-34970463 | MS.gene056331:intron | 60.0% |
!! | GGTAGTGGTGGTGGTGGTGG+TGG | - | chr4.1:34970453-34970472 | MS.gene056331:intron | 65.0% |
!! | GGTGGTAGTGGTGGTGGTGG+TGG | - | chr4.1:34970450-34970469 | MS.gene056331:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 34970297 | 34973408 | 34970297 | ID=MS.gene056331 |
chr4.1 | mRNA | 34970297 | 34973408 | 34970297 | ID=MS.gene056331.t1;Parent=MS.gene056331 |
chr4.1 | exon | 34972871 | 34973408 | 34972871 | ID=MS.gene056331.t1.exon1;Parent=MS.gene056331.t1 |
chr4.1 | CDS | 34972871 | 34973408 | 34972871 | ID=cds.MS.gene056331.t1;Parent=MS.gene056331.t1 |
chr4.1 | exon | 34971805 | 34972139 | 34971805 | ID=MS.gene056331.t1.exon2;Parent=MS.gene056331.t1 |
chr4.1 | CDS | 34971805 | 34972139 | 34971805 | ID=cds.MS.gene056331.t1;Parent=MS.gene056331.t1 |
chr4.1 | exon | 34971373 | 34971546 | 34971373 | ID=MS.gene056331.t1.exon3;Parent=MS.gene056331.t1 |
chr4.1 | CDS | 34971373 | 34971546 | 34971373 | ID=cds.MS.gene056331.t1;Parent=MS.gene056331.t1 |
chr4.1 | exon | 34970807 | 34970872 | 34970807 | ID=MS.gene056331.t1.exon4;Parent=MS.gene056331.t1 |
chr4.1 | CDS | 34970807 | 34970872 | 34970807 | ID=cds.MS.gene056331.t1;Parent=MS.gene056331.t1 |
chr4.1 | exon | 34970641 | 34970709 | 34970641 | ID=MS.gene056331.t1.exon5;Parent=MS.gene056331.t1 |
chr4.1 | CDS | 34970641 | 34970709 | 34970641 | ID=cds.MS.gene056331.t1;Parent=MS.gene056331.t1 |
chr4.1 | exon | 34970297 | 34970350 | 34970297 | ID=MS.gene056331.t1.exon6;Parent=MS.gene056331.t1 |
chr4.1 | CDS | 34970297 | 34970350 | 34970297 | ID=cds.MS.gene056331.t1;Parent=MS.gene056331.t1 |
Gene Sequence |
Protein sequence |