Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84970.t1 | XP_013467539.1 | 94.4 | 304 | 14 | 1 | 1 | 301 | 75 | 378 | 1.10E-152 | 549.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84970.t1 | Q66GR3 | 53.9 | 295 | 99 | 5 | 8 | 298 | 95 | 356 | 2.1e-70 | 267.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84970.t1 | A0A072VIY5 | 94.4 | 304 | 14 | 1 | 1 | 301 | 75 | 378 | 8.2e-153 | 549.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene84970.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene78368 | MS.gene84970 | PPI |
MS.gene84970 | MS.gene032127 | PPI |
MS.gene84970 | MS.gene052042 | PPI |
MS.gene84970 | MS.gene95029 | PPI |
MS.gene056331 | MS.gene84970 | PPI |
MS.gene84970 | MS.gene54610 | PPI |
MS.gene84970 | MS.gene003934 | PPI |
MS.gene31079 | MS.gene84970 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84970.t1 | MTR_1g052470 | 94.408 | 304 | 14 | 1 | 1 | 301 | 75 | 378 | 0.0 | 589 |
MS.gene84970.t1 | MTR_1g052470 | 94.606 | 241 | 10 | 1 | 1 | 238 | 75 | 315 | 2.15e-165 | 462 |
MS.gene84970.t1 | MTR_2g098310 | 47.419 | 310 | 130 | 8 | 5 | 301 | 123 | 412 | 7.29e-83 | 256 |
MS.gene84970.t1 | MTR_7g092540 | 54.962 | 262 | 82 | 5 | 38 | 293 | 84 | 315 | 3.78e-81 | 248 |
MS.gene84970.t1 | MTR_4g065870 | 51.724 | 261 | 105 | 8 | 50 | 298 | 181 | 432 | 6.49e-78 | 244 |
MS.gene84970.t1 | MTR_2g098310 | 47.959 | 294 | 120 | 8 | 5 | 285 | 123 | 396 | 1.04e-77 | 242 |
MS.gene84970.t1 | MTR_7g092540 | 54.724 | 254 | 79 | 5 | 38 | 285 | 84 | 307 | 1.32e-75 | 234 |
MS.gene84970.t1 | MTR_2g098310 | 42.609 | 345 | 130 | 9 | 5 | 301 | 123 | 447 | 2.74e-75 | 237 |
MS.gene84970.t1 | MTR_4g065870 | 51.837 | 245 | 97 | 8 | 50 | 282 | 181 | 416 | 3.11e-71 | 226 |
MS.gene84970.t1 | MTR_2g098310 | 45.149 | 268 | 114 | 8 | 5 | 259 | 123 | 370 | 8.73e-62 | 201 |
MS.gene84970.t1 | MTR_4g065870 | 49.099 | 222 | 92 | 8 | 50 | 259 | 181 | 393 | 1.15e-56 | 188 |
MS.gene84970.t1 | MTR_3g028520 | 42.199 | 282 | 128 | 9 | 28 | 298 | 142 | 399 | 1.99e-54 | 182 |
MS.gene84970.t1 | MTR_3g027650 | 42.199 | 282 | 128 | 9 | 28 | 298 | 142 | 399 | 1.99e-54 | 182 |
MS.gene84970.t1 | MTR_3g027650 | 42.481 | 266 | 118 | 9 | 28 | 282 | 142 | 383 | 1.86e-49 | 169 |
MS.gene84970.t1 | MTR_2g098310 | 40.891 | 247 | 113 | 8 | 5 | 238 | 123 | 349 | 8.93e-46 | 158 |
MS.gene84970.t1 | MTR_8g036235 | 41.636 | 269 | 131 | 6 | 34 | 293 | 137 | 388 | 2.48e-45 | 158 |
MS.gene84970.t1 | MTR_1g116790 | 41.176 | 255 | 127 | 8 | 49 | 293 | 96 | 337 | 4.27e-39 | 140 |
MS.gene84970.t1 | MTR_4g033295 | 69.663 | 89 | 25 | 1 | 205 | 293 | 104 | 190 | 2.61e-38 | 134 |
MS.gene84970.t1 | MTR_3g027650 | 38.824 | 255 | 121 | 9 | 16 | 259 | 130 | 360 | 1.51e-36 | 134 |
MS.gene84970.t1 | MTR_4g033295 | 73.077 | 78 | 19 | 1 | 205 | 282 | 104 | 179 | 8.99e-34 | 122 |
MS.gene84970.t1 | MTR_6g052280 | 60.674 | 89 | 35 | 0 | 171 | 259 | 4 | 92 | 6.18e-30 | 110 |
MS.gene84970.t1 | MTR_8g036235 | 38.306 | 248 | 123 | 7 | 34 | 272 | 137 | 363 | 1.03e-29 | 116 |
MS.gene84970.t1 | MTR_4g033295 | 78.182 | 55 | 10 | 1 | 205 | 259 | 104 | 156 | 5.02e-23 | 94.0 |
MS.gene84970.t1 | MTR_4g131160 | 59.420 | 69 | 27 | 1 | 220 | 288 | 195 | 262 | 3.95e-18 | 84.3 |
MS.gene84970.t1 | MTR_4g131160 | 59.420 | 69 | 27 | 1 | 220 | 288 | 198 | 265 | 4.02e-18 | 84.3 |
MS.gene84970.t1 | MTR_1g080890 | 53.333 | 75 | 34 | 1 | 214 | 288 | 186 | 259 | 8.01e-17 | 80.1 |
MS.gene84970.t1 | MTR_1g017350 | 54.930 | 71 | 32 | 0 | 221 | 291 | 260 | 330 | 1.09e-16 | 80.1 |
MS.gene84970.t1 | MTR_1g017350 | 54.930 | 71 | 32 | 0 | 221 | 291 | 260 | 330 | 1.16e-16 | 80.1 |
MS.gene84970.t1 | MTR_1g017350 | 54.930 | 71 | 32 | 0 | 221 | 291 | 260 | 330 | 1.24e-16 | 80.1 |
MS.gene84970.t1 | MTR_1g017350 | 54.930 | 71 | 32 | 0 | 221 | 291 | 260 | 330 | 1.29e-16 | 80.1 |
MS.gene84970.t1 | MTR_3g498825 | 56.716 | 67 | 29 | 0 | 221 | 287 | 147 | 213 | 8.56e-16 | 77.0 |
MS.gene84970.t1 | MTR_5g048860 | 53.521 | 71 | 33 | 0 | 221 | 291 | 365 | 435 | 1.64e-15 | 77.0 |
MS.gene84970.t1 | MTR_3g116770 | 55.072 | 69 | 31 | 0 | 221 | 289 | 191 | 259 | 2.93e-15 | 75.9 |
MS.gene84970.t1 | MTR_3g116770 | 55.072 | 69 | 31 | 0 | 221 | 289 | 191 | 259 | 2.94e-15 | 75.9 |
MS.gene84970.t1 | MTR_7g053410 | 53.623 | 69 | 32 | 0 | 221 | 289 | 317 | 385 | 5.29e-15 | 75.5 |
MS.gene84970.t1 | MTR_8g065740 | 53.623 | 69 | 32 | 0 | 221 | 289 | 305 | 373 | 5.59e-15 | 75.5 |
MS.gene84970.t1 | MTR_7g053410 | 53.623 | 69 | 32 | 0 | 221 | 289 | 317 | 385 | 5.88e-15 | 75.5 |
MS.gene84970.t1 | MTR_8g012290 | 53.731 | 67 | 31 | 0 | 221 | 287 | 291 | 357 | 1.17e-14 | 74.3 |
MS.gene84970.t1 | MTR_8g012290 | 53.731 | 67 | 31 | 0 | 221 | 287 | 291 | 357 | 1.22e-14 | 74.3 |
MS.gene84970.t1 | MTR_4g070320 | 50.000 | 76 | 36 | 1 | 214 | 289 | 138 | 211 | 1.87e-14 | 73.2 |
MS.gene84970.t1 | MTR_8g099880 | 52.174 | 69 | 33 | 0 | 221 | 289 | 145 | 213 | 2.60e-14 | 72.8 |
MS.gene84970.t1 | MTR_8g062240 | 50.746 | 67 | 33 | 0 | 221 | 287 | 151 | 217 | 1.28e-13 | 70.1 |
MS.gene84970.t1 | MTR_5g037250 | 49.254 | 67 | 34 | 0 | 221 | 287 | 112 | 178 | 2.08e-12 | 66.2 |
MS.gene84970.t1 | MTR_1g018090 | 54.545 | 66 | 29 | 1 | 220 | 285 | 273 | 337 | 4.33e-12 | 66.2 |
MS.gene84970.t1 | MTR_7g092510 | 46.377 | 69 | 37 | 0 | 221 | 289 | 173 | 241 | 6.09e-12 | 65.9 |
MS.gene84970.t1 | MTR_3g103030 | 54.545 | 66 | 29 | 1 | 220 | 285 | 228 | 292 | 6.75e-12 | 65.5 |
MS.gene84970.t1 | MTR_1g059270 | 44.928 | 69 | 38 | 0 | 221 | 289 | 160 | 228 | 2.21e-11 | 63.9 |
MS.gene84970.t1 | MTR_1g059270 | 44.928 | 69 | 38 | 0 | 221 | 289 | 160 | 228 | 2.37e-11 | 63.2 |
MS.gene84970.t1 | MTR_1g070870 | 53.333 | 75 | 34 | 1 | 214 | 288 | 116 | 189 | 9.02e-11 | 62.0 |
MS.gene84970.t1 | MTR_1g070870 | 53.333 | 75 | 34 | 1 | 214 | 288 | 113 | 186 | 9.51e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84970.t1 | AT2G42280 | 53.898 | 295 | 99 | 5 | 8 | 298 | 95 | 356 | 5.14e-93 | 280 |
MS.gene84970.t1 | AT2G42280 | 53.405 | 279 | 93 | 5 | 8 | 282 | 95 | 340 | 5.50e-84 | 257 |
MS.gene84970.t1 | AT1G51140 | 42.804 | 271 | 128 | 9 | 29 | 293 | 127 | 376 | 1.29e-52 | 177 |
MS.gene84970.t1 | AT2G42280 | 46.383 | 235 | 89 | 5 | 8 | 238 | 95 | 296 | 3.12e-51 | 171 |
MS.gene84970.t1 | AT1G05805 | 42.105 | 247 | 108 | 10 | 52 | 293 | 139 | 355 | 6.30e-44 | 154 |
MS.gene84970.t1 | AT1G35460 | 68.966 | 87 | 25 | 1 | 207 | 293 | 169 | 253 | 1.85e-39 | 139 |
MS.gene84970.t1 | AT2G43140 | 62.857 | 105 | 38 | 1 | 190 | 293 | 102 | 206 | 1.79e-38 | 135 |
MS.gene84970.t1 | AT2G43140 | 41.961 | 255 | 112 | 10 | 52 | 298 | 82 | 308 | 3.41e-38 | 137 |
MS.gene84970.t1 | AT4G09180 | 65.909 | 88 | 28 | 1 | 207 | 294 | 172 | 257 | 8.68e-36 | 130 |
MS.gene84970.t1 | AT1G35460 | 79.245 | 53 | 9 | 1 | 207 | 259 | 169 | 219 | 7.42e-24 | 97.4 |
MS.gene84970.t1 | AT2G24260 | 60.870 | 69 | 26 | 1 | 220 | 288 | 34 | 101 | 6.09e-19 | 84.7 |
MS.gene84970.t1 | AT2G24260 | 60.000 | 70 | 27 | 1 | 219 | 288 | 136 | 204 | 2.16e-18 | 84.7 |
MS.gene84970.t1 | AT4G30980 | 57.333 | 75 | 30 | 2 | 214 | 288 | 124 | 196 | 6.04e-18 | 82.8 |
MS.gene84970.t1 | AT4G30980 | 57.333 | 75 | 30 | 2 | 214 | 288 | 172 | 244 | 1.07e-17 | 82.8 |
MS.gene84970.t1 | AT5G58010 | 55.072 | 69 | 30 | 1 | 220 | 288 | 98 | 165 | 5.26e-17 | 80.1 |
MS.gene84970.t1 | AT4G34530 | 56.522 | 69 | 30 | 0 | 221 | 289 | 172 | 240 | 2.75e-16 | 78.6 |
MS.gene84970.t1 | AT1G10120 | 54.930 | 71 | 32 | 0 | 221 | 291 | 206 | 276 | 6.08e-16 | 77.8 |
MS.gene84970.t1 | AT1G10120 | 54.930 | 71 | 32 | 0 | 221 | 291 | 206 | 276 | 6.08e-16 | 77.8 |
MS.gene84970.t1 | AT5G50915 | 56.716 | 67 | 29 | 0 | 221 | 287 | 136 | 202 | 9.73e-16 | 75.9 |
MS.gene84970.t1 | AT5G50915 | 56.716 | 67 | 29 | 0 | 221 | 287 | 136 | 202 | 9.73e-16 | 75.9 |
MS.gene84970.t1 | AT5G50915 | 56.716 | 67 | 29 | 0 | 221 | 287 | 136 | 202 | 1.32e-15 | 75.9 |
MS.gene84970.t1 | AT5G50915 | 56.716 | 67 | 29 | 0 | 221 | 287 | 136 | 202 | 1.32e-15 | 75.9 |
MS.gene84970.t1 | AT1G68920 | 52.113 | 71 | 34 | 0 | 221 | 291 | 302 | 372 | 2.63e-15 | 76.3 |
MS.gene84970.t1 | AT1G68920 | 52.113 | 71 | 34 | 0 | 221 | 291 | 303 | 373 | 2.68e-15 | 76.3 |
MS.gene84970.t1 | AT1G68920 | 52.113 | 71 | 34 | 0 | 221 | 291 | 303 | 373 | 2.68e-15 | 76.3 |
MS.gene84970.t1 | AT1G68920 | 52.113 | 71 | 34 | 0 | 221 | 291 | 303 | 373 | 2.68e-15 | 76.3 |
MS.gene84970.t1 | AT1G25330 | 50.000 | 76 | 37 | 1 | 212 | 287 | 96 | 170 | 6.88e-15 | 72.8 |
MS.gene84970.t1 | AT3G07340 | 53.731 | 67 | 31 | 0 | 221 | 287 | 258 | 324 | 1.27e-14 | 74.3 |
MS.gene84970.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 221 | 287 | 201 | 267 | 1.30e-14 | 73.9 |
MS.gene84970.t1 | AT3G07340 | 53.731 | 67 | 31 | 0 | 221 | 287 | 258 | 324 | 1.31e-14 | 74.3 |
MS.gene84970.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 221 | 287 | 223 | 289 | 1.47e-14 | 73.9 |
MS.gene84970.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 221 | 287 | 223 | 289 | 1.47e-14 | 73.9 |
MS.gene84970.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 221 | 287 | 223 | 289 | 1.47e-14 | 73.9 |
MS.gene84970.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 221 | 287 | 223 | 289 | 1.47e-14 | 73.9 |
MS.gene84970.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 221 | 287 | 172 | 238 | 1.77e-14 | 73.2 |
MS.gene84970.t1 | AT5G48560 | 47.368 | 76 | 40 | 0 | 221 | 296 | 301 | 376 | 1.81e-14 | 73.9 |
MS.gene84970.t1 | AT5G48560 | 47.368 | 76 | 40 | 0 | 221 | 296 | 301 | 376 | 1.97e-14 | 73.9 |
MS.gene84970.t1 | AT3G23690 | 50.725 | 69 | 34 | 0 | 221 | 289 | 191 | 259 | 1.42e-13 | 70.9 |
MS.gene84970.t1 | AT1G59640 | 50.746 | 67 | 33 | 0 | 221 | 287 | 136 | 202 | 2.55e-13 | 68.9 |
MS.gene84970.t1 | AT2G42300 | 46.053 | 76 | 40 | 1 | 215 | 289 | 178 | 253 | 3.98e-13 | 69.3 |
MS.gene84970.t1 | AT2G42300 | 46.053 | 76 | 40 | 1 | 215 | 289 | 178 | 253 | 4.33e-13 | 68.6 |
MS.gene84970.t1 | AT1G18400 | 49.254 | 67 | 34 | 0 | 221 | 287 | 145 | 211 | 5.09e-13 | 67.8 |
MS.gene84970.t1 | AT1G73830 | 49.254 | 67 | 34 | 0 | 221 | 287 | 147 | 213 | 6.39e-13 | 67.8 |
MS.gene84970.t1 | AT1G73830 | 49.254 | 67 | 34 | 0 | 221 | 287 | 147 | 213 | 6.52e-13 | 67.8 |
MS.gene84970.t1 | AT1G18400 | 49.254 | 67 | 34 | 0 | 221 | 287 | 145 | 211 | 7.17e-13 | 67.8 |
MS.gene84970.t1 | AT2G18300 | 47.826 | 69 | 36 | 0 | 221 | 289 | 185 | 253 | 8.02e-13 | 68.6 |
MS.gene84970.t1 | AT2G18300 | 47.826 | 69 | 36 | 0 | 221 | 289 | 185 | 253 | 8.08e-13 | 68.6 |
MS.gene84970.t1 | AT1G59640 | 50.746 | 67 | 33 | 0 | 221 | 287 | 136 | 202 | 9.46e-13 | 68.2 |
MS.gene84970.t1 | AT4G36540 | 45.455 | 77 | 40 | 1 | 211 | 287 | 133 | 207 | 9.88e-13 | 67.8 |
MS.gene84970.t1 | AT2G18300 | 47.826 | 69 | 36 | 0 | 221 | 289 | 185 | 253 | 1.08e-12 | 68.2 |
MS.gene84970.t1 | AT4G36540 | 45.455 | 77 | 40 | 1 | 211 | 287 | 133 | 207 | 1.08e-12 | 67.8 |
MS.gene84970.t1 | AT3G57800 | 47.826 | 69 | 36 | 0 | 221 | 289 | 204 | 272 | 1.17e-12 | 68.2 |
MS.gene84970.t1 | AT1G27740 | 52.857 | 70 | 32 | 1 | 216 | 285 | 162 | 230 | 3.73e-12 | 65.5 |
MS.gene84970.t1 | AT4G33880 | 54.545 | 66 | 29 | 1 | 220 | 285 | 265 | 329 | 5.11e-12 | 66.2 |
MS.gene84970.t1 | AT2G14760 | 54.545 | 66 | 29 | 1 | 220 | 285 | 236 | 300 | 5.31e-12 | 65.9 |
MS.gene84970.t1 | AT5G62610 | 46.269 | 67 | 36 | 0 | 221 | 287 | 153 | 219 | 1.46e-11 | 64.3 |
MS.gene84970.t1 | AT5G62610 | 46.269 | 67 | 36 | 0 | 221 | 287 | 153 | 219 | 1.46e-11 | 64.3 |
MS.gene84970.t1 | AT4G02590 | 53.333 | 75 | 34 | 1 | 214 | 288 | 76 | 149 | 7.41e-11 | 61.6 |
MS.gene84970.t1 | AT4G02590 | 53.333 | 75 | 34 | 1 | 214 | 288 | 139 | 212 | 7.53e-11 | 62.4 |
MS.gene84970.t1 | AT4G02590 | 53.333 | 75 | 34 | 1 | 214 | 288 | 139 | 212 | 7.53e-11 | 62.4 |
Find 65 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGCTATGGATGGTTCTTT+TGG | 0.221242 | 1.3:+36617755 | MS.gene84970:CDS |
GGAAACTATGCCACGGTAAA+TGG | 0.245415 | 1.3:+36619099 | MS.gene84970:CDS |
TGTTCTAAGGAAATGAATTC+TGG | 0.257572 | 1.3:+36617674 | None:intergenic |
TCCAACATTTCCTTTCAAAA+TGG | 0.262412 | 1.3:+36617875 | MS.gene84970:CDS |
CTGGATTCCCCTATAGTTCT+TGG | 0.264196 | 1.3:+36619298 | MS.gene84970:CDS |
AGTATCATTCCAAGAACTAT+AGG | 0.312794 | 1.3:-36619307 | None:intergenic |
ACATCACATGATAAGAGTTT+TGG | 0.326645 | 1.3:+36617809 | MS.gene84970:CDS |
ATTTGTACCTTATCCATGTT+TGG | 0.331656 | 1.3:-36619910 | None:intergenic |
TTTGGATTGGTTGGTTCATT+GGG | 0.337311 | 1.3:+36617773 | MS.gene84970:CDS |
CCATTGCTACCTCGGTCATC+AGG | 0.353942 | 1.3:-36619255 | None:intergenic |
TCAAGAAATGCTTCTTCGTT+GGG | 0.389766 | 1.3:+36619180 | MS.gene84970:CDS |
GTATCATTCCAAGAACTATA+GGG | 0.394121 | 1.3:-36619306 | None:intergenic |
GTTTGCTCGTTTATCACTTA+GGG | 0.399495 | 1.3:-36620745 | None:intergenic |
ACTCATCAGCGTGGAGGGCT+TGG | 0.408130 | 1.3:+36619486 | MS.gene84970:intron |
ATGAATTCTGGTTATGCTGC+TGG | 0.416060 | 1.3:+36617686 | MS.gene84970:CDS |
ATTGGTTGGTTCATTGGGAA+TGG | 0.419938 | 1.3:+36617778 | MS.gene84970:CDS |
ATAGTTTCCAACGCCTTTCA+TGG | 0.421587 | 1.3:-36619085 | None:intergenic |
CATTATCCTAGACATGGTTC+TGG | 0.422292 | 1.3:+36617719 | MS.gene84970:CDS |
TGGTTCAAATCTTCTTAGAC+AGG | 0.423641 | 1.3:+36617829 | MS.gene84970:CDS |
TTCTACTTCAAGTTCTGCTA+TGG | 0.441169 | 1.3:+36617742 | MS.gene84970:CDS |
TTCAAGAAATGCTTCTTCGT+TGG | 0.443867 | 1.3:+36619179 | MS.gene84970:CDS |
AGTTTGCTCGTTTATCACTT+AGG | 0.455813 | 1.3:-36620746 | None:intergenic |
AACGAAGAAGCATTTCTTGA+AGG | 0.468589 | 1.3:-36619177 | None:intergenic |
ACCCTCTCGGCAATGCTTCG+AGG | 0.468775 | 1.3:-36619645 | None:intergenic |
CACATCAGACATGCTGGACT+TGG | 0.470090 | 1.3:+36620042 | MS.gene84970:CDS |
ATCATCTCAGATGAAGTGTT+TGG | 0.470848 | 1.3:-36619546 | None:intergenic |
ACTTCAAGTTCTGCTATGGA+TGG | 0.477883 | 1.3:+36617746 | MS.gene84970:CDS |
TCCTCGAAGCATTGCCGAGA+GGG | 0.481258 | 1.3:+36619644 | MS.gene84970:CDS |
AATGGCGATTCTACTCACTA+TGG | 0.489783 | 1.3:+36619273 | MS.gene84970:CDS |
TGTAAAATTCGAGCGAAAAG+AGG | 0.493630 | 1.3:+36619609 | MS.gene84970:CDS |
AGCTAACCTGAGTGTTCAAT+CGG | 0.495401 | 1.3:-36619152 | None:intergenic |
GCTTGTTCCAAACATGGATA+AGG | 0.495622 | 1.3:+36619903 | MS.gene84970:CDS |
ACGAAGAAGCATTTCTTGAA+GGG | 0.507126 | 1.3:-36619176 | None:intergenic |
GATTCTACTCACTATGGCTC+TGG | 0.511407 | 1.3:+36619279 | MS.gene84970:CDS |
ATGTTGGAGAAAAGACCAGC+AGG | 0.517169 | 1.3:-36617860 | None:intergenic |
ATCTCAGTGGTTTGAAAAGA+GGG | 0.517303 | 1.3:+36619346 | MS.gene84970:CDS |
AACTAACACATCAGACATGC+TGG | 0.518473 | 1.3:+36620036 | MS.gene84970:CDS |
TAGAATCGCCATTGCTACCT+CGG | 0.526042 | 1.3:-36619263 | None:intergenic |
AATCTCAGTGGTTTGAAAAG+AGG | 0.526692 | 1.3:+36619345 | MS.gene84970:CDS |
AGACAGGGTAGTTCCCCTGC+TGG | 0.543236 | 1.3:+36617845 | MS.gene84970:CDS |
GCAAGAGCTTGTTCCAAACA+TGG | 0.548846 | 1.3:+36619897 | MS.gene84970:CDS |
CCACCTCATTATCCTAGACA+TGG | 0.549227 | 1.3:+36617713 | MS.gene84970:CDS |
CTAAGATCAGTGAAAGAATG+AGG | 0.559063 | 1.3:+36619869 | MS.gene84970:CDS |
TTCATCTGAGATGATTGCTA+TGG | 0.566845 | 1.3:+36619554 | MS.gene84970:CDS |
GAGCAAACTGCAAATGTATG+AGG | 0.578835 | 1.3:+36620760 | MS.gene84970:CDS |
CATTGCTACCTCGGTCATCA+GGG | 0.588119 | 1.3:-36619254 | None:intergenic |
CCTGATGACCGAGGTAGCAA+TGG | 0.590547 | 1.3:+36619255 | MS.gene84970:CDS |
GTAGAACCAGAACCATGTCT+AGG | 0.597203 | 1.3:-36617725 | None:intergenic |
TAAACAAAATCATACCCTCT+CGG | 0.600646 | 1.3:-36619658 | None:intergenic |
GAACCATGTCTAGGATAATG+AGG | 0.601649 | 1.3:-36617716 | None:intergenic |
GCCACGGTAAATGGTAGTAA+CGG | 0.609242 | 1.3:+36619108 | MS.gene84970:CDS |
TATCATTCCAAGAACTATAG+GGG | 0.609931 | 1.3:-36619305 | None:intergenic |
CATCTCAGAAATAGATAGTG+AGG | 0.622320 | 1.3:+36619215 | MS.gene84970:CDS |
GGTTCAAATCTTCTTAGACA+GGG | 0.631058 | 1.3:+36617830 | MS.gene84970:CDS |
GCCGTTACTACCATTTACCG+TGG | 0.637465 | 1.3:-36619109 | None:intergenic |
GTGTTCAATCGGTTAATAGA+CGG | 0.638059 | 1.3:-36619141 | None:intergenic |
TGTTGGAGAAAAGACCAGCA+GGG | 0.641864 | 1.3:-36617859 | None:intergenic |
TATTAACCGATTGAACACTC+AGG | 0.669123 | 1.3:+36619146 | MS.gene84970:CDS |
GTTGGAGAAAAGACCAGCAG+GGG | 0.676212 | 1.3:-36617858 | None:intergenic |
AGGCGTTGGAAACTATGCCA+CGG | 0.680755 | 1.3:+36619092 | MS.gene84970:CDS |
ATCCTCGAAGCATTGCCGAG+AGG | 0.702830 | 1.3:+36619643 | MS.gene84970:CDS |
CAAATGTATGAGGATGCAGA+AGG | 0.707448 | 1.3:+36620770 | MS.gene84970:CDS |
GCAACTAGCCCTGATGACCG+AGG | 0.708120 | 1.3:+36619246 | MS.gene84970:CDS |
CCATGTCTAGGATAATGAGG+TGG | 0.714763 | 1.3:-36617713 | None:intergenic |
TCATTCACAGAAAATCTCAG+TGG | 0.729969 | 1.3:+36619333 | MS.gene84970:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATTAGCTATACTTAAT+TGG | - | chr1.3:36620441-36620460 | None:intergenic | 15.0% |
!! | ATTATTAGCTATACTTAATT+GGG | - | chr1.3:36620440-36620459 | None:intergenic | 15.0% |
!! | ATTTATGAAATTATAACCAT+TGG | - | chr1.3:36620643-36620662 | None:intergenic | 15.0% |
!! | TATATACAATTCATTCTTAA+TGG | + | chr1.3:36619024-36619043 | MS.gene84970:intron | 15.0% |
!!! | AAATGGTAATATGTTTTATA+TGG | + | chr1.3:36617892-36617911 | MS.gene84970:intron | 15.0% |
!!! | ATATTTTCATTAATAGGATA+TGG | + | chr1.3:36618594-36618613 | MS.gene84970:intron | 15.0% |
!!! | GAAGTTATATTTTCATTAAT+AGG | + | chr1.3:36618588-36618607 | MS.gene84970:intron | 15.0% |
!!! | TATGTTTTATATGGTTATTT+TGG | + | chr1.3:36617901-36617920 | MS.gene84970:intron | 15.0% |
!! | AAATCTTCAAAAACAATTCA+AGG | + | chr1.3:36620081-36620100 | MS.gene84970:CDS | 20.0% |
!! | AACAATGCATAATATATGTA+AGG | + | chr1.3:36618675-36618694 | MS.gene84970:intron | 20.0% |
!! | ATTAATGATGATATGTGTAT+TGG | + | chr1.3:36618217-36618236 | MS.gene84970:intron | 20.0% |
!! | GGAAAAAAAAATGATTATGA+TGG | + | chr1.3:36618449-36618468 | MS.gene84970:intron | 20.0% |
!! | TACAATTTCAAGAACTAAAT+GGG | - | chr1.3:36620150-36620169 | None:intergenic | 20.0% |
!! | TTACAAATTCACAAAACATA+AGG | + | chr1.3:36620607-36620626 | MS.gene84970:intron | 20.0% |
!! | TTACAATTTCAAGAACTAAA+TGG | - | chr1.3:36620151-36620170 | None:intergenic | 20.0% |
!! | TTGCTAATTCATTAAAGTTA+TGG | - | chr1.3:36620191-36620210 | None:intergenic | 20.0% |
!! | TTGTCTAATAACTAATCTTA+AGG | + | chr1.3:36620525-36620544 | MS.gene84970:intron | 20.0% |
!! | TTTGCATATAAAACATTTGA+AGG | + | chr1.3:36619754-36619773 | MS.gene84970:intron | 20.0% |
!!! | AAAAATGTTTTCTGATATTC+AGG | + | chr1.3:36619383-36619402 | MS.gene84970:CDS | 20.0% |
!!! | AAACATATTACCATTTTGAA+AGG | - | chr1.3:36617888-36617907 | None:intergenic | 20.0% |
!!! | ATTAATAGTATAGAAGTGTT+TGG | + | chr1.3:36619982-36620001 | MS.gene84970:intron | 20.0% |
!!! | CAATTTTATTATTAGAGAAG+TGG | - | chr1.3:36620333-36620352 | None:intergenic | 20.0% |
!!! | TTGAAAAATCTGAAATGTTA+TGG | + | chr1.3:36618944-36618963 | MS.gene84970:intron | 20.0% |
!!! | TTTATATGGTTATTTTGGTT+TGG | + | chr1.3:36617906-36617925 | MS.gene84970:intron | 20.0% |
! | AAATAGTCCTTGAAATTCAT+CGG | - | chr1.3:36620561-36620580 | None:intergenic | 25.0% |
! | AAATTCCACATCATCATTTA+AGG | - | chr1.3:36620289-36620308 | None:intergenic | 25.0% |
! | AATTCCACATCATCATTTAA+GGG | - | chr1.3:36620288-36620307 | None:intergenic | 25.0% |
! | AATTGTGGTATGTATGAAAA+TGG | + | chr1.3:36618428-36618447 | MS.gene84970:intron | 25.0% |
! | AGATGCTTGAAAAAACTAAT+TGG | - | chr1.3:36619694-36619713 | None:intergenic | 25.0% |
! | ATCAATCACTATGATGATAA+AGG | - | chr1.3:36620681-36620700 | None:intergenic | 25.0% |
! | TCAATCACTATGATGATAAA+GGG | - | chr1.3:36620680-36620699 | None:intergenic | 25.0% |
! | TCATAGTGATTGATATTAAC+TGG | + | chr1.3:36620687-36620706 | MS.gene84970:intron | 25.0% |
! | TCATTCTTAATGGTTATTGA+TGG | + | chr1.3:36619034-36619053 | MS.gene84970:intron | 25.0% |
! | TTCATTAATAGGATATGGAA+GGG | + | chr1.3:36618599-36618618 | MS.gene84970:intron | 25.0% |
! | TTGTTGTGTTGAAAATTTCA+AGG | + | chr1.3:36620579-36620598 | MS.gene84970:intron | 25.0% |
! | TTTCATTAATAGGATATGGA+AGG | + | chr1.3:36618598-36618617 | MS.gene84970:intron | 25.0% |
!! | AATTTTACCGATGAATTTCA+AGG | + | chr1.3:36620551-36620570 | MS.gene84970:intron | 25.0% |
!! | TAATGAGAATATTGCTACTT+TGG | + | chr1.3:36618369-36618388 | MS.gene84970:intron | 25.0% |
!! | TTGAAGAAGTAACTATTTTC+AGG | + | chr1.3:36619837-36619856 | MS.gene84970:intron | 25.0% |
!! | TTTTATTATTAGAGAAGTGG+CGG | - | chr1.3:36620330-36620349 | None:intergenic | 25.0% |
!!! | ACATCAATTTTGTTTGACTT+TGG | + | chr1.3:36619938-36619957 | MS.gene84970:intron | 25.0% |
!!! | ATTGAGTCAATCTTAGTTTT+AGG | + | chr1.3:36618541-36618560 | MS.gene84970:intron | 25.0% |
!!! | GAAAGAAGTAGTTTTTTTTG+TGG | + | chr1.3:36618566-36618585 | MS.gene84970:intron | 25.0% |
!!! | TTAATGTTGTCTTTGTTTTC+CGG | + | chr1.3:36618312-36618331 | MS.gene84970:intron | 25.0% |
!!! | TTCATACCCTTTTTTTTTTG+TGG | - | chr1.3:36618723-36618742 | None:intergenic | 25.0% |
AATTCACAAAAGCTCATGTA+GGG | - | chr1.3:36618785-36618804 | None:intergenic | 30.0% | |
AATTTCAAGAACTAAATGGG+TGG | - | chr1.3:36620147-36620166 | None:intergenic | 30.0% | |
AGTATCATTCCAAGAACTAT+AGG | - | chr1.3:36619310-36619329 | None:intergenic | 30.0% | |
ATGGTGACATGTACAATTTA+TGG | + | chr1.3:36618468-36618487 | MS.gene84970:intron | 30.0% | |
ATTTCAAGAACTAAATGGGT+GGG | - | chr1.3:36620146-36620165 | None:intergenic | 30.0% | |
ATTTGTACCTTATCCATGTT+TGG | - | chr1.3:36619913-36619932 | None:intergenic | 30.0% | |
CAATTCAAGGTACACATATA+AGG | + | chr1.3:36620094-36620113 | MS.gene84970:intron | 30.0% | |
GGACTGCAAAAAATAGAAAA+AGG | - | chr1.3:36620727-36620746 | None:intergenic | 30.0% | |
GGTAATGTTCATAAATTGCA+GGG | + | chr1.3:36619055-36619074 | MS.gene84970:intron | 30.0% | |
GTATAGCTAATAATTTCACG+TGG | + | chr1.3:36620446-36620465 | MS.gene84970:intron | 30.0% | |
GTATCATTCCAAGAACTATA+GGG | - | chr1.3:36619309-36619328 | None:intergenic | 30.0% | |
TAAACAAAATCATACCCTCT+CGG | - | chr1.3:36619661-36619680 | None:intergenic | 30.0% | |
TAATTCACAAAAGCTCATGT+AGG | - | chr1.3:36618786-36618805 | None:intergenic | 30.0% | |
TATCATTCCAAGAACTATAG+GGG | - | chr1.3:36619308-36619327 | None:intergenic | 30.0% | |
TCATTAATAGGATATGGAAG+GGG | + | chr1.3:36618600-36618619 | MS.gene84970:intron | 30.0% | |
TCCAACATTTCCTTTCAAAA+TGG | + | chr1.3:36617875-36617894 | MS.gene84970:CDS | 30.0% | |
TCTGATATTCAGGTATGTAT+TGG | + | chr1.3:36619393-36619412 | MS.gene84970:intron | 30.0% | |
TGCATAATATATGTAAGGTC+CGG | + | chr1.3:36618680-36618699 | MS.gene84970:intron | 30.0% | |
TTGACATTTCTTCATGTTCT+TGG | + | chr1.3:36620008-36620027 | MS.gene84970:intron | 30.0% | |
TTGTGAATTAATCGCGAATT+AGG | + | chr1.3:36618796-36618815 | MS.gene84970:intron | 30.0% | |
TTTGGTTATTTATAGCTGCA+GGG | + | chr1.3:36618117-36618136 | MS.gene84970:intron | 30.0% | |
! | ACATCACATGATAAGAGTTT+TGG | + | chr1.3:36617809-36617828 | MS.gene84970:CDS | 30.0% |
! | AGATTGACTCAATTCAAACT+AGG | - | chr1.3:36618534-36618553 | None:intergenic | 30.0% |
! | ATAAGGACGAATTTTACCAA+TGG | + | chr1.3:36620624-36620643 | MS.gene84970:intron | 30.0% |
! | ATTTTACAAGGTACAGAATC+TGG | - | chr1.3:36619597-36619616 | None:intergenic | 30.0% |
! | TGGTAATGTTCATAAATTGC+AGG | + | chr1.3:36619054-36619073 | MS.gene84970:intron | 30.0% |
!! | AATAGTATAGAAGTGTTTGG+AGG | + | chr1.3:36619985-36620004 | MS.gene84970:intron | 30.0% |
!! | ACCATTTTGAAAGGAAATGT+TGG | - | chr1.3:36617879-36617898 | None:intergenic | 30.0% |
!! | TTTGTTGTAAGGTGTTCTTT+TGG | + | chr1.3:36618284-36618303 | MS.gene84970:intron | 30.0% |
!!! | ATACCCTTTTTTTTTTGTGG+TGG | - | chr1.3:36618720-36618739 | None:intergenic | 30.0% |
!!! | CTGAGTGATTTTTTGTTGTA+AGG | + | chr1.3:36618273-36618292 | MS.gene84970:intron | 30.0% |
AAAGGAAATTAACGCACAAG+TGG | - | chr1.3:36618755-36618774 | None:intergenic | 35.0% | |
AATCTCAGTGGTTTGAAAAG+AGG | + | chr1.3:36619345-36619364 | MS.gene84970:CDS | 35.0% | |
ATCTCAGTGGTTTGAAAAGA+GGG | + | chr1.3:36619346-36619365 | MS.gene84970:CDS | 35.0% | |
CAAAGTTTCATAGCTGAATC+CGG | - | chr1.3:36618334-36618353 | None:intergenic | 35.0% | |
CATAATATATGTAAGGTCCG+GGG | + | chr1.3:36618682-36618701 | MS.gene84970:intron | 35.0% | |
CATCTCAGAAATAGATAGTG+AGG | + | chr1.3:36619215-36619234 | MS.gene84970:CDS | 35.0% | |
CTAAGATCAGTGAAAGAATG+AGG | + | chr1.3:36619869-36619888 | MS.gene84970:CDS | 35.0% | |
CTTAATTGCAATCACCTACA+AGG | + | chr1.3:36618400-36618419 | MS.gene84970:intron | 35.0% | |
GCATAATATATGTAAGGTCC+GGG | + | chr1.3:36618681-36618700 | MS.gene84970:intron | 35.0% | |
GGTTCAAATCTTCTTAGACA+GGG | + | chr1.3:36617830-36617849 | MS.gene84970:CDS | 35.0% | |
GTGTTCAATCGGTTAATAGA+CGG | - | chr1.3:36619144-36619163 | None:intergenic | 35.0% | |
GTTTGCTCGTTTATCACTTA+GGG | - | chr1.3:36620748-36620767 | None:intergenic | 35.0% | |
GTTTGGTTATTTATAGCTGC+AGG | + | chr1.3:36618116-36618135 | MS.gene84970:intron | 35.0% | |
TATTAACCGATTGAACACTC+AGG | + | chr1.3:36619146-36619165 | MS.gene84970:CDS | 35.0% | |
TCAAGAAATGCTTCTTCGTT+GGG | + | chr1.3:36619180-36619199 | MS.gene84970:CDS | 35.0% | |
TCATTCACAGAAAATCTCAG+TGG | + | chr1.3:36619333-36619352 | MS.gene84970:CDS | 35.0% | |
TGGCCACCACAAAAAAAAAA+GGG | + | chr1.3:36618714-36618733 | MS.gene84970:intron | 35.0% | |
TGGTTCAAATCTTCTTAGAC+AGG | + | chr1.3:36617829-36617848 | MS.gene84970:CDS | 35.0% | |
TGTAAAATTCGAGCGAAAAG+AGG | + | chr1.3:36619609-36619628 | MS.gene84970:CDS | 35.0% | |
TTCAAGAAATGCTTCTTCGT+TGG | + | chr1.3:36619179-36619198 | MS.gene84970:CDS | 35.0% | |
TTGGCCACCACAAAAAAAAA+AGG | + | chr1.3:36618713-36618732 | MS.gene84970:intron | 35.0% | |
! | AGTTTGCTCGTTTATCACTT+AGG | - | chr1.3:36620749-36620768 | None:intergenic | 35.0% |
! | ATCATCTCAGATGAAGTGTT+TGG | - | chr1.3:36619549-36619568 | None:intergenic | 35.0% |
! | CTTTTCGCTCGAATTTTACA+AGG | - | chr1.3:36619609-36619628 | None:intergenic | 35.0% |
! | TATGGATGGTTCTTTTGGAT+TGG | + | chr1.3:36617760-36617779 | MS.gene84970:CDS | 35.0% |
! | TGATGATGTGGAATTTCATG+TGG | + | chr1.3:36620293-36620312 | MS.gene84970:intron | 35.0% |
! | TTCATCTGAGATGATTGCTA+TGG | + | chr1.3:36619554-36619573 | MS.gene84970:CDS | 35.0% |
! | TTCTACTTCAAGTTCTGCTA+TGG | + | chr1.3:36617742-36617761 | MS.gene84970:CDS | 35.0% |
!! | AACCAATTCGCAAAAGTACT+GGG | + | chr1.3:36618822-36618841 | MS.gene84970:intron | 35.0% |
!! | AACGAAGAAGCATTTCTTGA+AGG | - | chr1.3:36619180-36619199 | None:intergenic | 35.0% |
!! | ACGAAGAAGCATTTCTTGAA+GGG | - | chr1.3:36619179-36619198 | None:intergenic | 35.0% |
!! | TTTGGATTGGTTGGTTCATT+GGG | + | chr1.3:36617773-36617792 | MS.gene84970:CDS | 35.0% |
!!! | GAGTCAATCTTAGTTTTAGG+TGG | + | chr1.3:36618544-36618563 | MS.gene84970:intron | 35.0% |
!!! | TTTTGGATTGGTTGGTTCAT+TGG | + | chr1.3:36617772-36617791 | MS.gene84970:CDS | 35.0% |
!!! | TTTTTTTTTTGTGGTGGCCA+AGG | - | chr1.3:36618714-36618733 | None:intergenic | 35.0% |
AACTAACACATCAGACATGC+TGG | + | chr1.3:36620036-36620055 | MS.gene84970:CDS | 40.0% | |
AATAGGATATGGAAGGGGAT+TGG | + | chr1.3:36618605-36618624 | MS.gene84970:intron | 40.0% | |
AATGGCGATTCTACTCACTA+TGG | + | chr1.3:36619273-36619292 | MS.gene84970:CDS | 40.0% | |
ACCTACAAGGCTAGAAATTG+TGG | + | chr1.3:36618413-36618432 | MS.gene84970:intron | 40.0% | |
AGCTAACCTGAGTGTTCAAT+CGG | - | chr1.3:36619155-36619174 | None:intergenic | 40.0% | |
AGTCGTTAGACAACATCATG+TGG | + | chr1.3:36620262-36620281 | MS.gene84970:intron | 40.0% | |
ATAGTTTCCAACGCCTTTCA+TGG | - | chr1.3:36619088-36619107 | None:intergenic | 40.0% | |
CAAACCAAACCAAGTTGCTT+GGG | - | chr1.3:36618101-36618120 | None:intergenic | 40.0% | |
CAAATGTATGAGGATGCAGA+AGG | + | chr1.3:36620770-36620789 | MS.gene84970:CDS | 40.0% | |
CATTATCCTAGACATGGTTC+TGG | + | chr1.3:36617719-36617738 | MS.gene84970:CDS | 40.0% | |
CTCATGTAGGGTGACAAAAA+AGG | - | chr1.3:36618773-36618792 | None:intergenic | 40.0% | |
GAAGCTCACTTCACTTAGTT+TGG | + | chr1.3:36619415-36619434 | MS.gene84970:intron | 40.0% | |
GAGCAAACTGCAAATGTATG+AGG | + | chr1.3:36620760-36620779 | MS.gene84970:CDS | 40.0% | |
GCTTGTTCCAAACATGGATA+AGG | + | chr1.3:36619903-36619922 | MS.gene84970:CDS | 40.0% | |
GTCTTAACAACCTAAGATGC+AGG | - | chr1.3:36618992-36619011 | None:intergenic | 40.0% | |
TGATATCTCACCTGCATCTT+AGG | + | chr1.3:36618979-36618998 | MS.gene84970:intron | 40.0% | |
TTGGTATGCGAGTACAAGTT+CGG | + | chr1.3:36618847-36618866 | MS.gene84970:intron | 40.0% | |
! | ACTTCAAGTTCTGCTATGGA+TGG | + | chr1.3:36617746-36617765 | MS.gene84970:CDS | 40.0% |
! | ATATGGAAGGGGATTGGTAA+AGG | + | chr1.3:36618611-36618630 | MS.gene84970:intron | 40.0% |
! | ATGAATTCTGGTTATGCTGC+TGG | + | chr1.3:36617686-36617705 | MS.gene84970:CDS | 40.0% |
! | ATTGGTTGGTTCATTGGGAA+TGG | + | chr1.3:36617778-36617797 | MS.gene84970:CDS | 40.0% |
! | GAACCAATTCGCAAAAGTAC+TGG | + | chr1.3:36618821-36618840 | MS.gene84970:intron | 40.0% |
! | GAACCATGTCTAGGATAATG+AGG | - | chr1.3:36617719-36617738 | None:intergenic | 40.0% |
! | TATGGAAGGGGATTGGTAAA+GGG | + | chr1.3:36618612-36618631 | MS.gene84970:intron | 40.0% |
! | TCTGCTATGGATGGTTCTTT+TGG | + | chr1.3:36617755-36617774 | MS.gene84970:CDS | 40.0% |
!! | ACCACAATTTCTAGCCTTGT+AGG | - | chr1.3:36618417-36618436 | None:intergenic | 40.0% |
!!! | ACTTGTTTTACTCATCAGCG+TGG | + | chr1.3:36619477-36619496 | MS.gene84970:intron | 40.0% |
!!! | GATGGTTCTTTTGGATTGGT+TGG | + | chr1.3:36617764-36617783 | MS.gene84970:CDS | 40.0% |
ATGTTGGAGAAAAGACCAGC+AGG | - | chr1.3:36617863-36617882 | None:intergenic | 45.0% | |
ATTAGTCGCCTACCATTGGT+GGG | - | chr1.3:36617971-36617990 | None:intergenic | 45.0% | |
CCAAACCAAACCAAGTTGCT+TGG | - | chr1.3:36618102-36618121 | None:intergenic | 45.0% | |
CCACCTCATTATCCTAGACA+TGG | + | chr1.3:36617713-36617732 | MS.gene84970:CDS | 45.0% | |
CTGGATTCCCCTATAGTTCT+TGG | + | chr1.3:36619298-36619317 | MS.gene84970:CDS | 45.0% | |
GATTCTACTCACTATGGCTC+TGG | + | chr1.3:36619279-36619298 | MS.gene84970:CDS | 45.0% | |
GCCACGGTAAATGGTAGTAA+CGG | + | chr1.3:36619108-36619127 | MS.gene84970:CDS | 45.0% | |
GGAAACTATGCCACGGTAAA+TGG | + | chr1.3:36619099-36619118 | MS.gene84970:CDS | 45.0% | |
GTAGAACCAGAACCATGTCT+AGG | - | chr1.3:36617728-36617747 | None:intergenic | 45.0% | |
TAGAATCGCCATTGCTACCT+CGG | - | chr1.3:36619266-36619285 | None:intergenic | 45.0% | |
TGGTATGCGAGTACAAGTTC+GGG | + | chr1.3:36618848-36618867 | MS.gene84970:intron | 45.0% | |
TGTTGGAGAAAAGACCAGCA+GGG | - | chr1.3:36617862-36617881 | None:intergenic | 45.0% | |
! | CCATGTCTAGGATAATGAGG+TGG | - | chr1.3:36617716-36617735 | None:intergenic | 45.0% |
! | CTCCCAGTACTTTTGCGAAT+TGG | - | chr1.3:36618827-36618846 | None:intergenic | 45.0% |
! | GCAAGAGCTTGTTCCAAACA+TGG | + | chr1.3:36619897-36619916 | MS.gene84970:CDS | 45.0% |
! | GTGGCCCTTAAATGATGATG+TGG | + | chr1.3:36620281-36620300 | MS.gene84970:intron | 45.0% |
! | GTTTTACTCATCAGCGTGGA+GGG | + | chr1.3:36619481-36619500 | MS.gene84970:intron | 45.0% |
! | TGTTTTACTCATCAGCGTGG+AGG | + | chr1.3:36619480-36619499 | MS.gene84970:intron | 45.0% |
!! | ATAGCTGCAGGGTGTTCTTT+TGG | + | chr1.3:36618128-36618147 | MS.gene84970:intron | 45.0% |
!! | CCAAGCAACTTGGTTTGGTT+TGG | + | chr1.3:36618099-36618118 | MS.gene84970:intron | 45.0% |
!! | TTCGCAAAAGTACTGGGAGT+TGG | + | chr1.3:36618828-36618847 | MS.gene84970:intron | 45.0% |
!! | TTTTCTGCCATGAAAGGCGT+TGG | + | chr1.3:36619078-36619097 | MS.gene84970:CDS | 45.0% |
AATACCGGGTTCGATTCCCA+TGG | - | chr1.3:36618038-36618057 | None:intergenic | 50.0% | |
AGTACAAGTTCGGGGTTCTC+TGG | + | chr1.3:36618857-36618876 | MS.gene84970:intron | 50.0% | |
ATACCGGGTTCGATTCCCAT+GGG | - | chr1.3:36618037-36618056 | None:intergenic | 50.0% | |
ATTTCCGACCCACCAATGGT+AGG | + | chr1.3:36617960-36617979 | MS.gene84970:intron | 50.0% | |
CACATCAGACATGCTGGACT+TGG | + | chr1.3:36620042-36620061 | MS.gene84970:CDS | 50.0% | |
CATTGCTACCTCGGTCATCA+GGG | - | chr1.3:36619257-36619276 | None:intergenic | 50.0% | |
CCAACTGAGCTAAGCTCACA+AGG | - | chr1.3:36618651-36618670 | None:intergenic | 50.0% | |
CCAATGGTAGGCGACTAATC+CGG | + | chr1.3:36617972-36617991 | MS.gene84970:intron | 50.0% | |
CCTTGTGAGCTTAGCTCAGT+TGG | + | chr1.3:36618648-36618667 | MS.gene84970:intron | 50.0% | |
GCCGTTACTACCATTTACCG+TGG | - | chr1.3:36619112-36619131 | None:intergenic | 50.0% | |
GGTATGCGAGTACAAGTTCG+GGG | + | chr1.3:36618849-36618868 | MS.gene84970:intron | 50.0% | |
GTTGGAGAAAAGACCAGCAG+GGG | - | chr1.3:36617861-36617880 | None:intergenic | 50.0% | |
! | ACCATTGGTGGGTCGGAAAT+CGG | - | chr1.3:36617960-36617979 | None:intergenic | 50.0% |
! | GATTAGTCGCCTACCATTGG+TGG | - | chr1.3:36617972-36617991 | None:intergenic | 50.0% |
! | GCAGGGTTTTCTGCCATGAA+AGG | + | chr1.3:36619072-36619091 | MS.gene84970:intron | 50.0% |
!! | AGGCGTTGGAAACTATGCCA+CGG | + | chr1.3:36619092-36619111 | MS.gene84970:CDS | 50.0% |
AAGGTCCGGGGTTCAAACCT+TGG | + | chr1.3:36618694-36618713 | MS.gene84970:intron | 55.0% | |
AATCGAACCCGGTATTCCCC+GGG | + | chr1.3:36618042-36618061 | MS.gene84970:intron | 55.0% | |
AGTACGTTCCCGGGGAATAC+CGG | - | chr1.3:36618053-36618072 | None:intergenic | 55.0% | |
CCATTGCTACCTCGGTCATC+AGG | - | chr1.3:36619258-36619277 | None:intergenic | 55.0% | |
CCTGATGACCGAGGTAGCAA+TGG | + | chr1.3:36619255-36619274 | MS.gene84970:CDS | 55.0% | |
CTCCTTCCAAGTACGTTCCC+GGG | - | chr1.3:36618062-36618081 | None:intergenic | 55.0% | |
GAATCGAACCCGGTATTCCC+CGG | + | chr1.3:36618041-36618060 | MS.gene84970:intron | 55.0% | |
GCTCCTTCCAAGTACGTTCC+CGG | - | chr1.3:36618063-36618082 | None:intergenic | 55.0% | |
GGAGCCCAAGCAACTTGGTT+TGG | + | chr1.3:36618094-36618113 | MS.gene84970:intron | 55.0% | |
GTATTCCCCGGGAACGTACT+TGG | + | chr1.3:36618053-36618072 | MS.gene84970:intron | 55.0% | |
TACCGGGTTCGATTCCCATG+GGG | - | chr1.3:36618036-36618055 | None:intergenic | 55.0% | |
TCCTTCCAAGTACGTTCCCG+GGG | - | chr1.3:36618061-36618080 | None:intergenic | 55.0% | |
TCGGGGTTCTCTGGTGAATG+CGG | + | chr1.3:36618866-36618885 | MS.gene84970:intron | 55.0% | |
TTCCCATGGGGAACAACGCT+TGG | - | chr1.3:36618024-36618043 | None:intergenic | 55.0% | |
TTCCCCATGGGAATCGAACC+CGG | + | chr1.3:36618031-36618050 | MS.gene84970:intron | 55.0% | |
! | ACCGATTTCCGACCCACCAA+TGG | + | chr1.3:36617956-36617975 | MS.gene84970:intron | 55.0% |
! | CTAATCCGGTTCGTGCGTAG+AGG | + | chr1.3:36617986-36618005 | MS.gene84970:intron | 55.0% |
! | TTAGAGAAGTGGCGGTGTCG+TGG | - | chr1.3:36620322-36620341 | None:intergenic | 55.0% |
!! | ATCCTCGAAGCATTGCCGAG+AGG | + | chr1.3:36619643-36619662 | MS.gene84970:CDS | 55.0% |
!! | CCGGATTAGTCGCCTACCAT+TGG | - | chr1.3:36617975-36617994 | None:intergenic | 55.0% |
!! | TCCTCGAAGCATTGCCGAGA+GGG | + | chr1.3:36619644-36619663 | MS.gene84970:CDS | 55.0% |
ACCCTCTCGGCAATGCTTCG+AGG | - | chr1.3:36619648-36619667 | None:intergenic | 60.0% | |
ACTCATCAGCGTGGAGGGCT+TGG | + | chr1.3:36619486-36619505 | MS.gene84970:intron | 60.0% | |
AGACAGGGTAGTTCCCCTGC+TGG | + | chr1.3:36617845-36617864 | MS.gene84970:CDS | 60.0% | |
CATGGGGAACAACGCTTGGC+CGG | - | chr1.3:36618020-36618039 | None:intergenic | 60.0% | |
CCAAGTTGCTTGGGCTCCAG+TGG | - | chr1.3:36618092-36618111 | None:intergenic | 60.0% | |
CCACTGGAGCCCAAGCAACT+TGG | + | chr1.3:36618089-36618108 | MS.gene84970:intron | 60.0% | |
GCAACTAGCCCTGATGACCG+AGG | + | chr1.3:36619246-36619265 | MS.gene84970:CDS | 60.0% | |
GCATGCCTCTACGCACGAAC+CGG | - | chr1.3:36617994-36618013 | None:intergenic | 60.0% | |
GGTGGCCAAGGTTTGAACCC+CGG | - | chr1.3:36618702-36618721 | None:intergenic | 60.0% | |
GTACGTTCCCGGGGAATACC+GGG | - | chr1.3:36618052-36618071 | None:intergenic | 60.0% | |
TCCCCGGGAACGTACTTGGA+AGG | + | chr1.3:36618057-36618076 | MS.gene84970:intron | 60.0% | |
TGGAAGGAGCTCCTTGCCAC+TGG | + | chr1.3:36618073-36618092 | MS.gene84970:intron | 60.0% | |
TTGCTTGGGCTCCAGTGGCA+AGG | - | chr1.3:36618087-36618106 | None:intergenic | 60.0% | |
! | GGCCAAGCGTTGTTCCCCAT+GGG | + | chr1.3:36618019-36618038 | MS.gene84970:intron | 60.0% |
! | GTCGCCTACCATTGGTGGGT+CGG | - | chr1.3:36617967-36617986 | None:intergenic | 60.0% |
! | CGGCCAAGCGTTGTTCCCCA+TGG | + | chr1.3:36618018-36618037 | MS.gene84970:intron | 65.0% |
! | GTGCGTAGAGGCATGCGCAC+CGG | + | chr1.3:36617998-36618017 | MS.gene84970:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 36617686 | 36620809 | 36617686 | ID=MS.gene84970 |
chr1.3 | mRNA | 36617686 | 36620809 | 36617686 | ID=MS.gene84970.t1;Parent=MS.gene84970 |
chr1.3 | exon | 36617686 | 36617896 | 36617686 | ID=MS.gene84970.t1.exon1;Parent=MS.gene84970.t1 |
chr1.3 | CDS | 36617686 | 36617896 | 36617686 | ID=cds.MS.gene84970.t1;Parent=MS.gene84970.t1 |
chr1.3 | exon | 36619076 | 36619404 | 36619076 | ID=MS.gene84970.t1.exon2;Parent=MS.gene84970.t1 |
chr1.3 | CDS | 36619076 | 36619404 | 36619076 | ID=cds.MS.gene84970.t1;Parent=MS.gene84970.t1 |
chr1.3 | exon | 36619495 | 36619665 | 36619495 | ID=MS.gene84970.t1.exon3;Parent=MS.gene84970.t1 |
chr1.3 | CDS | 36619495 | 36619665 | 36619495 | ID=cds.MS.gene84970.t1;Parent=MS.gene84970.t1 |
chr1.3 | exon | 36619859 | 36619924 | 36619859 | ID=MS.gene84970.t1.exon4;Parent=MS.gene84970.t1 |
chr1.3 | CDS | 36619859 | 36619924 | 36619859 | ID=cds.MS.gene84970.t1;Parent=MS.gene84970.t1 |
chr1.3 | exon | 36620034 | 36620102 | 36620034 | ID=MS.gene84970.t1.exon5;Parent=MS.gene84970.t1 |
chr1.3 | CDS | 36620034 | 36620102 | 36620034 | ID=cds.MS.gene84970.t1;Parent=MS.gene84970.t1 |
chr1.3 | exon | 36620744 | 36620809 | 36620744 | ID=MS.gene84970.t1.exon6;Parent=MS.gene84970.t1 |
chr1.3 | CDS | 36620744 | 36620809 | 36620744 | ID=cds.MS.gene84970.t1;Parent=MS.gene84970.t1 |
Gene Sequence |
Protein sequence |