Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041017.t1 | XP_013467539.1 | 91.3 | 379 | 21 | 4 | 2 | 372 | 4 | 378 | 4.90E-182 | 647.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041017.t1 | Q66GR3 | 47.6 | 389 | 151 | 7 | 1 | 369 | 1 | 356 | 1.7e-74 | 281.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041017.t1 | A0A072VIY5 | 91.3 | 379 | 21 | 4 | 2 | 372 | 4 | 378 | 3.6e-182 | 647.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene041017.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041017 | MS.gene032127 | PPI |
| MS.gene003934 | MS.gene041017 | PPI |
| MS.gene95029 | MS.gene041017 | PPI |
| MS.gene54610 | MS.gene041017 | PPI |
| MS.gene041017 | MS.gene052042 | PPI |
| MS.gene056331 | MS.gene041017 | PPI |
| MS.gene31079 | MS.gene041017 | PPI |
| MS.gene78368 | MS.gene041017 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041017.t1 | MTR_1g052470 | 91.293 | 379 | 21 | 4 | 2 | 372 | 4 | 378 | 0.0 | 693 |
| MS.gene041017.t1 | MTR_1g052470 | 90.823 | 316 | 17 | 4 | 2 | 309 | 4 | 315 | 0.0 | 565 |
| MS.gene041017.t1 | MTR_2g098310 | 41.509 | 424 | 184 | 11 | 1 | 372 | 1 | 412 | 5.48e-86 | 266 |
| MS.gene041017.t1 | MTR_7g092540 | 44.681 | 376 | 135 | 7 | 1 | 364 | 1 | 315 | 1.15e-81 | 252 |
| MS.gene041017.t1 | MTR_2g098310 | 41.505 | 412 | 169 | 11 | 1 | 356 | 1 | 396 | 5.16e-81 | 253 |
| MS.gene041017.t1 | MTR_2g098310 | 38.793 | 464 | 175 | 13 | 1 | 372 | 1 | 447 | 1.02e-78 | 249 |
| MS.gene041017.t1 | MTR_7g092540 | 44.414 | 367 | 131 | 7 | 1 | 355 | 1 | 306 | 7.98e-76 | 237 |
| MS.gene041017.t1 | MTR_4g065870 | 50.958 | 261 | 107 | 8 | 121 | 369 | 181 | 432 | 9.63e-76 | 241 |
| MS.gene041017.t1 | MTR_4g065870 | 51.020 | 245 | 99 | 8 | 121 | 353 | 181 | 416 | 4.38e-69 | 223 |
| MS.gene041017.t1 | MTR_2g098310 | 39.267 | 382 | 168 | 11 | 1 | 330 | 1 | 370 | 1.42e-64 | 211 |
| MS.gene041017.t1 | MTR_3g028520 | 37.376 | 404 | 184 | 15 | 7 | 369 | 24 | 399 | 5.69e-57 | 191 |
| MS.gene041017.t1 | MTR_3g027650 | 37.376 | 404 | 184 | 15 | 7 | 369 | 24 | 399 | 5.69e-57 | 191 |
| MS.gene041017.t1 | MTR_4g065870 | 48.198 | 222 | 94 | 8 | 121 | 330 | 181 | 393 | 1.80e-54 | 185 |
| MS.gene041017.t1 | MTR_3g027650 | 37.275 | 389 | 173 | 15 | 7 | 353 | 24 | 383 | 4.85e-52 | 178 |
| MS.gene041017.t1 | MTR_8g036235 | 37.500 | 376 | 198 | 8 | 7 | 364 | 32 | 388 | 4.23e-50 | 173 |
| MS.gene041017.t1 | MTR_2g098310 | 36.011 | 361 | 167 | 11 | 1 | 309 | 1 | 349 | 1.12e-48 | 168 |
| MS.gene041017.t1 | MTR_3g027650 | 35.342 | 365 | 167 | 15 | 7 | 330 | 24 | 360 | 5.55e-39 | 142 |
| MS.gene041017.t1 | MTR_4g033295 | 69.663 | 89 | 25 | 1 | 276 | 364 | 104 | 190 | 7.08e-38 | 135 |
| MS.gene041017.t1 | MTR_1g116790 | 41.176 | 255 | 127 | 9 | 120 | 364 | 96 | 337 | 7.23e-37 | 136 |
| MS.gene041017.t1 | MTR_8g036235 | 34.930 | 355 | 190 | 9 | 7 | 343 | 32 | 363 | 3.05e-34 | 130 |
| MS.gene041017.t1 | MTR_4g033295 | 73.077 | 78 | 19 | 1 | 276 | 353 | 104 | 179 | 2.09e-33 | 123 |
| MS.gene041017.t1 | MTR_6g052280 | 61.798 | 89 | 34 | 0 | 242 | 330 | 4 | 92 | 3.24e-30 | 112 |
| MS.gene041017.t1 | MTR_4g033295 | 78.182 | 55 | 10 | 1 | 276 | 330 | 104 | 156 | 8.25e-23 | 94.7 |
| MS.gene041017.t1 | MTR_4g131160 | 59.420 | 69 | 27 | 1 | 291 | 359 | 195 | 262 | 4.90e-18 | 85.1 |
| MS.gene041017.t1 | MTR_4g131160 | 59.420 | 69 | 27 | 1 | 291 | 359 | 198 | 265 | 5.18e-18 | 85.1 |
| MS.gene041017.t1 | MTR_1g080890 | 53.333 | 75 | 34 | 1 | 285 | 359 | 186 | 259 | 8.67e-17 | 81.3 |
| MS.gene041017.t1 | MTR_1g017350 | 53.425 | 73 | 34 | 0 | 290 | 362 | 258 | 330 | 1.23e-16 | 81.3 |
| MS.gene041017.t1 | MTR_1g017350 | 53.425 | 73 | 34 | 0 | 290 | 362 | 258 | 330 | 1.29e-16 | 81.3 |
| MS.gene041017.t1 | MTR_1g017350 | 53.425 | 73 | 34 | 0 | 290 | 362 | 258 | 330 | 1.35e-16 | 81.3 |
| MS.gene041017.t1 | MTR_1g017350 | 53.425 | 73 | 34 | 0 | 290 | 362 | 258 | 330 | 1.44e-16 | 81.3 |
| MS.gene041017.t1 | MTR_3g498825 | 56.716 | 67 | 29 | 0 | 292 | 358 | 147 | 213 | 1.12e-15 | 77.8 |
| MS.gene041017.t1 | MTR_5g048860 | 53.521 | 71 | 33 | 0 | 292 | 362 | 365 | 435 | 2.31e-15 | 77.8 |
| MS.gene041017.t1 | MTR_3g116770 | 55.072 | 69 | 31 | 0 | 292 | 360 | 191 | 259 | 3.47e-15 | 76.6 |
| MS.gene041017.t1 | MTR_3g116770 | 55.072 | 69 | 31 | 0 | 292 | 360 | 191 | 259 | 3.69e-15 | 76.6 |
| MS.gene041017.t1 | MTR_7g053410 | 53.623 | 69 | 32 | 0 | 292 | 360 | 317 | 385 | 5.65e-15 | 76.6 |
| MS.gene041017.t1 | MTR_7g053410 | 53.623 | 69 | 32 | 0 | 292 | 360 | 317 | 385 | 6.26e-15 | 76.6 |
| MS.gene041017.t1 | MTR_8g065740 | 53.623 | 69 | 32 | 0 | 292 | 360 | 305 | 373 | 8.42e-15 | 75.9 |
| MS.gene041017.t1 | MTR_8g012290 | 53.731 | 67 | 31 | 0 | 292 | 358 | 291 | 357 | 1.42e-14 | 75.5 |
| MS.gene041017.t1 | MTR_8g012290 | 53.731 | 67 | 31 | 0 | 292 | 358 | 291 | 357 | 1.44e-14 | 75.5 |
| MS.gene041017.t1 | MTR_4g070320 | 50.000 | 76 | 36 | 1 | 285 | 360 | 138 | 211 | 2.12e-14 | 73.9 |
| MS.gene041017.t1 | MTR_8g099880 | 52.174 | 69 | 33 | 0 | 292 | 360 | 145 | 213 | 2.75e-14 | 73.6 |
| MS.gene041017.t1 | MTR_8g062240 | 50.746 | 67 | 33 | 0 | 292 | 358 | 151 | 217 | 1.30e-13 | 70.9 |
| MS.gene041017.t1 | MTR_5g037250 | 49.254 | 67 | 34 | 0 | 292 | 358 | 112 | 178 | 2.21e-12 | 66.6 |
| MS.gene041017.t1 | MTR_1g018090 | 54.545 | 66 | 29 | 1 | 291 | 356 | 273 | 337 | 5.74e-12 | 66.6 |
| MS.gene041017.t1 | MTR_7g092510 | 46.377 | 69 | 37 | 0 | 292 | 360 | 173 | 241 | 6.36e-12 | 66.6 |
| MS.gene041017.t1 | MTR_3g103030 | 54.545 | 66 | 29 | 1 | 291 | 356 | 228 | 292 | 8.07e-12 | 65.9 |
| MS.gene041017.t1 | MTR_1g059270 | 44.928 | 69 | 38 | 0 | 292 | 360 | 160 | 228 | 2.09e-11 | 64.7 |
| MS.gene041017.t1 | MTR_1g059270 | 44.928 | 69 | 38 | 0 | 292 | 360 | 160 | 228 | 2.30e-11 | 63.9 |
| MS.gene041017.t1 | MTR_1g070870 | 53.333 | 75 | 34 | 1 | 285 | 359 | 116 | 189 | 9.98e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041017.t1 | AT2G42280 | 47.558 | 389 | 151 | 7 | 1 | 369 | 1 | 356 | 1.03e-99 | 300 |
| MS.gene041017.t1 | AT2G42280 | 46.917 | 373 | 145 | 7 | 1 | 353 | 1 | 340 | 5.40e-91 | 278 |
| MS.gene041017.t1 | AT2G42280 | 41.033 | 329 | 141 | 7 | 1 | 309 | 1 | 296 | 6.60e-58 | 191 |
| MS.gene041017.t1 | AT1G51140 | 36.247 | 389 | 190 | 13 | 7 | 364 | 15 | 376 | 2.55e-57 | 191 |
| MS.gene041017.t1 | AT1G05805 | 41.129 | 248 | 109 | 8 | 123 | 364 | 139 | 355 | 3.05e-42 | 151 |
| MS.gene041017.t1 | AT1G35460 | 68.966 | 87 | 25 | 1 | 278 | 364 | 169 | 253 | 4.43e-39 | 140 |
| MS.gene041017.t1 | AT2G43140 | 42.353 | 255 | 111 | 10 | 123 | 369 | 82 | 308 | 2.51e-38 | 139 |
| MS.gene041017.t1 | AT2G43140 | 62.857 | 105 | 38 | 1 | 261 | 364 | 102 | 206 | 4.42e-38 | 136 |
| MS.gene041017.t1 | AT4G09180 | 65.909 | 88 | 28 | 1 | 278 | 365 | 172 | 257 | 2.14e-35 | 130 |
| MS.gene041017.t1 | AT1G35460 | 79.245 | 53 | 9 | 1 | 278 | 330 | 169 | 219 | 1.38e-23 | 98.2 |
| MS.gene041017.t1 | AT2G24260 | 60.870 | 69 | 26 | 1 | 291 | 359 | 34 | 101 | 7.28e-19 | 85.5 |
| MS.gene041017.t1 | AT2G24260 | 60.870 | 69 | 26 | 1 | 291 | 359 | 137 | 204 | 2.90e-18 | 85.5 |
| MS.gene041017.t1 | AT4G30980 | 57.333 | 75 | 30 | 2 | 285 | 359 | 124 | 196 | 7.17e-18 | 84.0 |
| MS.gene041017.t1 | AT4G30980 | 57.333 | 75 | 30 | 2 | 285 | 359 | 172 | 244 | 1.37e-17 | 83.6 |
| MS.gene041017.t1 | AT5G58010 | 55.072 | 69 | 30 | 1 | 291 | 359 | 98 | 165 | 6.07e-17 | 80.9 |
| MS.gene041017.t1 | AT4G34530 | 56.522 | 69 | 30 | 0 | 292 | 360 | 172 | 240 | 3.23e-16 | 79.3 |
| MS.gene041017.t1 | AT1G10120 | 54.930 | 71 | 32 | 0 | 292 | 362 | 206 | 276 | 7.83e-16 | 78.6 |
| MS.gene041017.t1 | AT1G10120 | 54.930 | 71 | 32 | 0 | 292 | 362 | 206 | 276 | 7.83e-16 | 78.6 |
| MS.gene041017.t1 | AT5G50915 | 56.716 | 67 | 29 | 0 | 292 | 358 | 136 | 202 | 1.18e-15 | 76.6 |
| MS.gene041017.t1 | AT5G50915 | 56.716 | 67 | 29 | 0 | 292 | 358 | 136 | 202 | 1.18e-15 | 76.6 |
| MS.gene041017.t1 | AT5G50915 | 56.716 | 67 | 29 | 0 | 292 | 358 | 136 | 202 | 1.42e-15 | 76.6 |
| MS.gene041017.t1 | AT5G50915 | 56.716 | 67 | 29 | 0 | 292 | 358 | 136 | 202 | 1.42e-15 | 76.6 |
| MS.gene041017.t1 | AT1G68920 | 52.113 | 71 | 34 | 0 | 292 | 362 | 302 | 372 | 2.90e-15 | 77.4 |
| MS.gene041017.t1 | AT1G68920 | 52.113 | 71 | 34 | 0 | 292 | 362 | 303 | 373 | 3.05e-15 | 77.4 |
| MS.gene041017.t1 | AT1G68920 | 52.113 | 71 | 34 | 0 | 292 | 362 | 303 | 373 | 3.05e-15 | 77.4 |
| MS.gene041017.t1 | AT1G68920 | 52.113 | 71 | 34 | 0 | 292 | 362 | 303 | 373 | 3.05e-15 | 77.4 |
| MS.gene041017.t1 | AT1G25330 | 50.000 | 76 | 37 | 1 | 283 | 358 | 96 | 170 | 7.69e-15 | 73.6 |
| MS.gene041017.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 292 | 358 | 201 | 267 | 1.45e-14 | 74.7 |
| MS.gene041017.t1 | AT3G07340 | 53.731 | 67 | 31 | 0 | 292 | 358 | 258 | 324 | 1.57e-14 | 75.1 |
| MS.gene041017.t1 | AT3G07340 | 53.731 | 67 | 31 | 0 | 292 | 358 | 258 | 324 | 1.60e-14 | 75.1 |
| MS.gene041017.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 292 | 358 | 223 | 289 | 1.97e-14 | 74.3 |
| MS.gene041017.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 292 | 358 | 223 | 289 | 1.97e-14 | 74.3 |
| MS.gene041017.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 292 | 358 | 223 | 289 | 1.97e-14 | 74.3 |
| MS.gene041017.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 292 | 358 | 223 | 289 | 1.97e-14 | 74.3 |
| MS.gene041017.t1 | AT1G26260 | 55.224 | 67 | 30 | 0 | 292 | 358 | 172 | 238 | 2.10e-14 | 73.9 |
| MS.gene041017.t1 | AT5G48560 | 47.368 | 76 | 40 | 0 | 292 | 367 | 301 | 376 | 2.16e-14 | 74.7 |
| MS.gene041017.t1 | AT5G48560 | 47.368 | 76 | 40 | 0 | 292 | 367 | 301 | 376 | 2.35e-14 | 74.7 |
| MS.gene041017.t1 | AT3G23690 | 50.725 | 69 | 34 | 0 | 292 | 360 | 191 | 259 | 1.44e-13 | 71.6 |
| MS.gene041017.t1 | AT1G59640 | 50.746 | 67 | 33 | 0 | 292 | 358 | 136 | 202 | 2.79e-13 | 69.7 |
| MS.gene041017.t1 | AT2G42300 | 46.053 | 76 | 40 | 1 | 286 | 360 | 178 | 253 | 3.68e-13 | 70.1 |
| MS.gene041017.t1 | AT2G42300 | 46.053 | 76 | 40 | 1 | 286 | 360 | 178 | 253 | 4.16e-13 | 69.3 |
| MS.gene041017.t1 | AT1G18400 | 49.254 | 67 | 34 | 0 | 292 | 358 | 145 | 211 | 5.01e-13 | 68.6 |
| MS.gene041017.t1 | AT1G73830 | 49.254 | 67 | 34 | 0 | 292 | 358 | 147 | 213 | 5.84e-13 | 68.9 |
| MS.gene041017.t1 | AT1G73830 | 49.254 | 67 | 34 | 0 | 292 | 358 | 147 | 213 | 6.02e-13 | 68.6 |
| MS.gene041017.t1 | AT1G18400 | 49.254 | 67 | 34 | 0 | 292 | 358 | 145 | 211 | 7.39e-13 | 68.6 |
| MS.gene041017.t1 | AT2G18300 | 47.826 | 69 | 36 | 0 | 292 | 360 | 185 | 253 | 7.75e-13 | 69.3 |
| MS.gene041017.t1 | AT2G18300 | 47.826 | 69 | 36 | 0 | 292 | 360 | 185 | 253 | 7.86e-13 | 69.3 |
| MS.gene041017.t1 | AT4G36540 | 45.455 | 77 | 40 | 1 | 282 | 358 | 133 | 207 | 9.44e-13 | 68.6 |
| MS.gene041017.t1 | AT1G59640 | 50.746 | 67 | 33 | 0 | 292 | 358 | 136 | 202 | 9.86e-13 | 68.9 |
| MS.gene041017.t1 | AT4G36540 | 45.455 | 77 | 40 | 1 | 282 | 358 | 133 | 207 | 1.01e-12 | 68.6 |
| MS.gene041017.t1 | AT2G18300 | 47.826 | 69 | 36 | 0 | 292 | 360 | 185 | 253 | 1.16e-12 | 68.9 |
| MS.gene041017.t1 | AT3G57800 | 46.479 | 71 | 38 | 0 | 290 | 360 | 202 | 272 | 1.24e-12 | 68.9 |
| MS.gene041017.t1 | AT1G27740 | 52.857 | 70 | 32 | 1 | 287 | 356 | 162 | 230 | 4.98e-12 | 65.9 |
| MS.gene041017.t1 | AT2G14760 | 54.545 | 66 | 29 | 1 | 291 | 356 | 236 | 300 | 5.19e-12 | 66.6 |
| MS.gene041017.t1 | AT4G33880 | 54.545 | 66 | 29 | 1 | 291 | 356 | 265 | 329 | 5.36e-12 | 67.0 |
| MS.gene041017.t1 | AT5G62610 | 46.269 | 67 | 36 | 0 | 292 | 358 | 153 | 219 | 1.36e-11 | 65.1 |
| MS.gene041017.t1 | AT5G62610 | 46.269 | 67 | 36 | 0 | 292 | 358 | 153 | 219 | 1.36e-11 | 65.1 |
| MS.gene041017.t1 | AT4G02590 | 53.333 | 75 | 34 | 1 | 285 | 359 | 139 | 212 | 7.96e-11 | 63.2 |
| MS.gene041017.t1 | AT4G02590 | 53.333 | 75 | 34 | 1 | 285 | 359 | 139 | 212 | 7.96e-11 | 63.2 |
| MS.gene041017.t1 | AT4G02590 | 53.333 | 75 | 34 | 1 | 285 | 359 | 76 | 149 | 8.30e-11 | 62.4 |
Find 78 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAGTAACGATAATATTTC+TGG | 0.157329 | 1.4:-40923403 | MS.gene041017:CDS |
| TCTGCCATGGATGGTTCTTT+TGG | 0.234453 | 1.4:-40923292 | MS.gene041017:CDS |
| CACAACCAATCCAATTCTTC+TGG | 0.235104 | 1.4:-40923550 | MS.gene041017:CDS |
| GGAAACTATGCCACGGTAAA+TGG | 0.245415 | 1.4:-40922015 | MS.gene041017:CDS |
| TGTTCTAAGGAAATGAATTC+TGG | 0.257572 | 1.4:-40923373 | MS.gene041017:CDS |
| TCCAACATTTCCTTTCAAAA+TGG | 0.262412 | 1.4:-40923172 | MS.gene041017:intron |
| CTGGATTCCCCTATAGTTCT+TGG | 0.264196 | 1.4:-40921816 | MS.gene041017:CDS |
| TTCTGGTTCATCTTGTTCTA+AGG | 0.264253 | 1.4:-40923386 | MS.gene041017:CDS |
| AGTATTGTTCCAAGAACTAT+AGG | 0.304814 | 1.4:+40921807 | None:intergenic |
| ACATCACATGATAAGAGTTT+TGG | 0.326645 | 1.4:-40923238 | MS.gene041017:CDS |
| ATTTGTACCTTATCCATGTT+TGG | 0.331656 | 1.4:+40921204 | None:intergenic |
| TTTGGATTGGTTGGTTCATT+GGG | 0.337311 | 1.4:-40923274 | MS.gene041017:CDS |
| TCAAGAAATGCTTCTTCCTT+GGG | 0.356423 | 1.4:-40921934 | MS.gene041017:CDS |
| ACGAAGCAACCCAGAAGAAT+TGG | 0.359803 | 1.4:+40923540 | None:intergenic |
| TTCAAGAAATGCTTCTTCCT+TGG | 0.367694 | 1.4:-40921935 | MS.gene041017:CDS |
| CCGTTGCTACCTCCGTCATC+AGG | 0.377114 | 1.4:+40921859 | None:intergenic |
| ACTCATCAGCGTGGAGGGCT+TGG | 0.396464 | 1.4:-40921628 | MS.gene041017:intron |
| GTTTGCTCGTTTATCACTTA+GGG | 0.399495 | 1.4:+40920367 | None:intergenic |
| AAGGAAATGAATTCTGGTTA+TGG | 0.401146 | 1.4:-40923367 | MS.gene041017:CDS |
| ATTGGTTGGTTCATTGGGAA+TGG | 0.419938 | 1.4:-40923269 | MS.gene041017:CDS |
| CATTATCCTAGACATGGTTC+TGG | 0.422292 | 1.4:-40923328 | MS.gene041017:CDS |
| TGGTTCAAATCTTCTTAGAC+AGG | 0.423641 | 1.4:-40923218 | MS.gene041017:CDS |
| ATAGTTTCCAACGCCTTTCA+TGG | 0.425995 | 1.4:+40922029 | None:intergenic |
| ATGAATTCTGGTTATGGTGC+TGG | 0.434475 | 1.4:-40923361 | MS.gene041017:CDS |
| GTATTGTTCCAAGAACTATA+GGG | 0.444890 | 1.4:+40921808 | None:intergenic |
| AACGGTGATTCTACTCACTA+TGG | 0.453244 | 1.4:-40921841 | MS.gene041017:CDS |
| AGTTTGCTCGTTTATCACTT+AGG | 0.455813 | 1.4:+40920366 | None:intergenic |
| ACAACCAATCCAATTCTTCT+GGG | 0.461387 | 1.4:-40923549 | MS.gene041017:CDS |
| GATTCTACTCACTATGGCTC+TGG | 0.464368 | 1.4:-40921835 | MS.gene041017:CDS |
| ACCCTCTCGGCAATGCTTCG+AGG | 0.468775 | 1.4:+40921469 | None:intergenic |
| ATCATCTCAGATGAAGTGTT+TGG | 0.470848 | 1.4:+40921568 | None:intergenic |
| AAGGAAGAAGCATTTCTTGA+AGG | 0.479751 | 1.4:+40921937 | None:intergenic |
| TCCTCGAAGCATTGCCGAGA+GGG | 0.481258 | 1.4:-40921470 | MS.gene041017:intron |
| ACTTCAAGTTCTGCCATGGA+TGG | 0.488659 | 1.4:-40923301 | MS.gene041017:CDS |
| TTCTACTTCAAGTTCTGCCA+TGG | 0.489782 | 1.4:-40923305 | MS.gene041017:CDS |
| GCTTGTTCCAAACATGGATA+AGG | 0.495622 | 1.4:-40921211 | MS.gene041017:intron |
| TCACCAGAAGAAGGAAAAGA+AGG | 0.496661 | 1.4:+40923478 | None:intergenic |
| AGGAAGAAGCATTTCTTGAA+GGG | 0.507126 | 1.4:+40921938 | None:intergenic |
| CACATCAGACATGTTGGACT+TGG | 0.512180 | 1.4:-40921072 | MS.gene041017:CDS |
| ATGTTGGAGAAAAGACCAGC+AGG | 0.517169 | 1.4:+40923187 | None:intergenic |
| ATCTCAGTGGTTTGAAAAGA+GGG | 0.517303 | 1.4:-40921768 | MS.gene041017:CDS |
| AATCTCAGTGGTTTGAAAAG+AGG | 0.526692 | 1.4:-40921769 | MS.gene041017:CDS |
| CCACCTCATTATCCTAGACA+TGG | 0.529372 | 1.4:-40923334 | MS.gene041017:CDS |
| AGGTAACCTGAGTGTTCAAT+CGG | 0.530212 | 1.4:+40921962 | None:intergenic |
| TTATTAGAATCACCAGAAGA+AGG | 0.532913 | 1.4:+40923469 | None:intergenic |
| AGAAGCATTTCTTGAAGGGA+AGG | 0.535438 | 1.4:+40921942 | None:intergenic |
| GCAACCCAGAAGAATTGGAT+TGG | 0.541202 | 1.4:+40923545 | None:intergenic |
| AGACAGGGTAGTTCCCCTGC+TGG | 0.543236 | 1.4:-40923202 | MS.gene041017:CDS |
| AACTAACACATCAGACATGT+TGG | 0.546138 | 1.4:-40921078 | MS.gene041017:CDS |
| GCAAGAGCTTGTTCCAAACA+TGG | 0.548846 | 1.4:-40921217 | MS.gene041017:CDS |
| CTAAGATCAGTGAAAGAATG+AGG | 0.559063 | 1.4:-40921245 | MS.gene041017:CDS |
| TTCATCTGAGATGATTGCTA+TGG | 0.566845 | 1.4:-40921560 | MS.gene041017:CDS |
| TGTAAAATTCGAGCGAAACG+AGG | 0.567064 | 1.4:-40921505 | MS.gene041017:CDS |
| CGTTGCTACCTCCGTCATCA+GGG | 0.572371 | 1.4:+40921860 | None:intergenic |
| AGTGTTCAATCGGTTAATAG+AGG | 0.572991 | 1.4:+40921972 | None:intergenic |
| GAGCAAACTGCAAATGTATG+AGG | 0.578835 | 1.4:-40920352 | MS.gene041017:CDS |
| GTAGAACCAGAACCATGTCT+AGG | 0.597203 | 1.4:+40923322 | None:intergenic |
| TAAACAAAATCATACCCTCT+CGG | 0.600646 | 1.4:+40921456 | None:intergenic |
| CAATCCAAAAGAACCATCCA+TGG | 0.600870 | 1.4:+40923288 | None:intergenic |
| GAACCATGTCTAGGATAATG+AGG | 0.601649 | 1.4:+40923331 | None:intergenic |
| GCCACGGTAAATGGTAGTAA+CGG | 0.609242 | 1.4:-40922006 | MS.gene041017:CDS |
| CCTGATGACGGAGGTAGCAA+CGG | 0.614696 | 1.4:-40921859 | MS.gene041017:CDS |
| GTGTTCAATCGGTTAATAGA+GGG | 0.620754 | 1.4:+40921973 | None:intergenic |
| TATTGTTCCAAGAACTATAG+GGG | 0.622302 | 1.4:+40921809 | None:intergenic |
| GGTTCAAATCTTCTTAGACA+GGG | 0.631058 | 1.4:-40923217 | MS.gene041017:CDS |
| GCCGTTACTACCATTTACCG+TGG | 0.637465 | 1.4:+40922005 | None:intergenic |
| GAAGCAACTAGCCCTGATGA+CGG | 0.637823 | 1.4:-40921871 | MS.gene041017:CDS |
| TATCTCTGAAATAGATAGCG+AGG | 0.637851 | 1.4:-40921899 | MS.gene041017:CDS |
| TGTTGGAGAAAAGACCAGCA+GGG | 0.641864 | 1.4:+40923188 | None:intergenic |
| GATATGTGACAACATTCCCA+AGG | 0.666047 | 1.4:+40921918 | None:intergenic |
| TATTAACCGATTGAACACTC+AGG | 0.666951 | 1.4:-40921968 | MS.gene041017:CDS |
| GTTGGAGAAAAGACCAGCAG+GGG | 0.676212 | 1.4:+40923189 | None:intergenic |
| AGGCGTTGGAAACTATGCCA+CGG | 0.680755 | 1.4:-40922022 | MS.gene041017:CDS |
| ATCCTCGAAGCATTGCCGAG+AGG | 0.702830 | 1.4:-40921471 | MS.gene041017:CDS |
| CAAATGTATGAGGATGCAGA+AGG | 0.707448 | 1.4:-40920342 | MS.gene041017:CDS |
| GCAACTAGCCCTGATGACGG+AGG | 0.713476 | 1.4:-40921868 | MS.gene041017:CDS |
| CCATGTCTAGGATAATGAGG+TGG | 0.720480 | 1.4:+40923334 | None:intergenic |
| TCATTCACAGAAAATCTCAG+TGG | 0.729969 | 1.4:-40921781 | MS.gene041017:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAGCTATACTTAAT+TGG | + | chr1.4:40923228-40923247 | None:intergenic | 15.0% |
| !! | ATTAATGATGATATTTGTAT+TGG | - | chr1.4:40921072-40921091 | MS.gene041017:CDS | 15.0% |
| !! | ATTATTAGCTATACTTAATT+GGG | + | chr1.4:40923227-40923246 | None:intergenic | 15.0% |
| !! | ATTTATGAAATTATAACCAT+TGG | + | chr1.4:40923430-40923449 | None:intergenic | 15.0% |
| !!! | AACATTTAGATTTTTCAATT+AGG | + | chr1.4:40921728-40921747 | None:intergenic | 15.0% |
| !!! | ACATTTAGATTTTTCAATTA+GGG | + | chr1.4:40921727-40921746 | None:intergenic | 15.0% |
| !!! | ATAAAGTTACTAAACATTTT+TGG | - | chr1.4:40920449-40920468 | MS.gene041017:intron | 15.0% |
| !!! | TAAAGTTACTAAACATTTTT+GGG | - | chr1.4:40920450-40920469 | MS.gene041017:intron | 15.0% |
| !! | AAATCTTCAAAAACAATTCA+AGG | - | chr1.4:40922866-40922885 | MS.gene041017:intron | 20.0% |
| !! | GAAAAAAAATGATTATGATG+GGG | - | chr1.4:40921305-40921324 | MS.gene041017:intron | 20.0% |
| !! | GAATTTAATGATTCAATTTG+TGG | - | chr1.4:40921355-40921374 | MS.gene041017:intron | 20.0% |
| !! | GGAAAAAAAATGATTATGAT+GGG | - | chr1.4:40921304-40921323 | MS.gene041017:intron | 20.0% |
| !! | TACAATTTCAAGAACTAAAT+GGG | + | chr1.4:40922935-40922954 | None:intergenic | 20.0% |
| !! | TATATACAATTCATTCGTAA+TGG | - | chr1.4:40921809-40921828 | MS.gene041017:CDS | 20.0% |
| !! | TGGAAAAAAAATGATTATGA+TGG | - | chr1.4:40921303-40921322 | MS.gene041017:intron | 20.0% |
| !! | TTACAAATTCACAAAACATA+AGG | - | chr1.4:40923394-40923413 | MS.gene041017:CDS | 20.0% |
| !! | TTACAATTTCAAGAACTAAA+TGG | + | chr1.4:40922936-40922955 | None:intergenic | 20.0% |
| !! | TTGCTAATTCATTAAAGTTA+TGG | + | chr1.4:40922976-40922995 | None:intergenic | 20.0% |
| !! | TTGTCTAATAACTAATCTTA+AGG | - | chr1.4:40923312-40923331 | MS.gene041017:CDS | 20.0% |
| !! | TTTGCATATAAAACATTTGA+GGG | - | chr1.4:40922539-40922558 | MS.gene041017:intron | 20.0% |
| !!! | AAACATATTACCATTTTGAA+AGG | + | chr1.4:40920740-40920759 | None:intergenic | 20.0% |
| !!! | AGTTATATTTTCATTGGATA+TGG | - | chr1.4:40921489-40921508 | MS.gene041017:CDS | 20.0% |
| !!! | CAATTTTATTATTAGAGAAG+TGG | + | chr1.4:40923120-40923139 | None:intergenic | 20.0% |
| !!! | TGTTGAAGTTATATTTTCAT+TGG | - | chr1.4:40921483-40921502 | MS.gene041017:CDS | 20.0% |
| !!! | TTTATGTTGTTATTTTCGTT+TGG | - | chr1.4:40920758-40920777 | MS.gene041017:intron | 20.0% |
| !!! | TTTTGCATATAAAACATTTG+AGG | - | chr1.4:40922538-40922557 | MS.gene041017:intron | 20.0% |
| ! | AAATAGTCCTTGAAATTCAT+CGG | + | chr1.4:40923348-40923367 | None:intergenic | 25.0% |
| ! | AAATTCCACATCATCATTTA+AGG | + | chr1.4:40923076-40923095 | None:intergenic | 25.0% |
| ! | AATTCCACATCATCATTTAA+GGG | + | chr1.4:40923075-40923094 | None:intergenic | 25.0% |
| ! | AATTGTGGTATGTATGAAAA+TGG | - | chr1.4:40921283-40921302 | MS.gene041017:intron | 25.0% |
| ! | AGATGCTTGAAAAAACTAAT+TGG | + | chr1.4:40922479-40922498 | None:intergenic | 25.0% |
| ! | ATCAATCACTATGATGATAA+AGG | + | chr1.4:40923468-40923487 | None:intergenic | 25.0% |
| ! | GATAATGTTCATAAATTGCA+GGG | - | chr1.4:40921840-40921859 | MS.gene041017:CDS | 25.0% |
| ! | TCAATCACTATGATGATAAA+GGG | + | chr1.4:40923467-40923486 | None:intergenic | 25.0% |
| ! | TCATAGTGATTGATATTAAC+TGG | - | chr1.4:40923474-40923493 | MS.gene041017:CDS | 25.0% |
| ! | TTCAAGTGAGATAAGAATAA+GGG | + | chr1.4:40921394-40921413 | None:intergenic | 25.0% |
| ! | TTGTTGTGTTGAAAATTTCA+AGG | - | chr1.4:40923366-40923385 | MS.gene041017:CDS | 25.0% |
| !! | AATTTTACCGATGAATTTCA+AGG | - | chr1.4:40923338-40923357 | MS.gene041017:CDS | 25.0% |
| !! | ATATTTTCATTGGATATGGA+AGG | - | chr1.4:40921493-40921512 | MS.gene041017:CDS | 25.0% |
| !! | GAAAATGTTTTCTGATATTC+AGG | - | chr1.4:40922168-40922187 | MS.gene041017:intron | 25.0% |
| !! | GAAGCTTAATTCACTTATTT+TGG | - | chr1.4:40922200-40922219 | MS.gene041017:intron | 25.0% |
| !! | TAATGAGAATATTGCTACTT+TGG | - | chr1.4:40921224-40921243 | MS.gene041017:CDS | 25.0% |
| !! | TATTTTCATTGGATATGGAA+GGG | - | chr1.4:40921494-40921513 | MS.gene041017:CDS | 25.0% |
| !! | TGATAATGTTCATAAATTGC+AGG | - | chr1.4:40921839-40921858 | MS.gene041017:CDS | 25.0% |
| !! | TTGAAGAAGTAACTATTTTC+AGG | - | chr1.4:40922622-40922641 | MS.gene041017:intron | 25.0% |
| !! | TTTCAAGTGAGATAAGAATA+AGG | + | chr1.4:40921395-40921414 | None:intergenic | 25.0% |
| !!! | ACATCAATTTTGTTTGACTT+TGG | - | chr1.4:40922723-40922742 | MS.gene041017:intron | 25.0% |
| !!! | ATTAATGGTATAGAAGTGTT+TGG | - | chr1.4:40922767-40922786 | MS.gene041017:intron | 25.0% |
| !!! | TTAATGTTGTCTTTGTTTTC+TGG | - | chr1.4:40921167-40921186 | MS.gene041017:intron | 25.0% |
| !!! | TTTATTTTTGGCTTTCACAT+TGG | - | chr1.4:40920794-40920813 | MS.gene041017:intron | 25.0% |
| AATTTCAAGAACTAAATGGG+TGG | + | chr1.4:40922932-40922951 | None:intergenic | 30.0% | |
| AGTATTGTTCCAAGAACTAT+AGG | + | chr1.4:40922095-40922114 | None:intergenic | 30.0% | |
| ATTTCAAGAACTAAATGGGT+GGG | + | chr1.4:40922931-40922950 | None:intergenic | 30.0% | |
| ATTTGTACCTTATCCATGTT+TGG | + | chr1.4:40922698-40922717 | None:intergenic | 30.0% | |
| CAATTCAAGGTACACATATA+AGG | - | chr1.4:40922879-40922898 | MS.gene041017:intron | 30.0% | |
| CTTAATTGCAATCACCTATA+AGG | - | chr1.4:40921255-40921274 | MS.gene041017:CDS | 30.0% | |
| GTATTGTTCCAAGAACTATA+GGG | + | chr1.4:40922094-40922113 | None:intergenic | 30.0% | |
| GTGAGTAACGATAATATTTC+TGG | - | chr1.4:40920496-40920515 | MS.gene041017:intron | 30.0% | |
| TAAACAAAATCATACCCTCT+CGG | + | chr1.4:40922446-40922465 | None:intergenic | 30.0% | |
| TATTGTTCCAAGAACTATAG+GGG | + | chr1.4:40922093-40922112 | None:intergenic | 30.0% | |
| TCCAACATTTCCTTTCAAAA+TGG | - | chr1.4:40920727-40920746 | MS.gene041017:intron | 30.0% | |
| TTATTAGAATCACCAGAAGA+AGG | + | chr1.4:40920433-40920452 | None:intergenic | 30.0% | |
| TTGACATTTCTTCATGTTCT+TGG | - | chr1.4:40922793-40922812 | MS.gene041017:intron | 30.0% | |
| TTTGGTTATTTATAGCTGCA+GGG | - | chr1.4:40920971-40920990 | MS.gene041017:intron | 30.0% | |
| ! | AAGGAAATGAATTCTGGTTA+TGG | - | chr1.4:40920532-40920551 | MS.gene041017:intron | 30.0% |
| ! | ACATCACATGATAAGAGTTT+TGG | - | chr1.4:40920661-40920680 | MS.gene041017:intron | 30.0% |
| ! | AGATTGACTCAATTCAAACT+AGG | + | chr1.4:40921433-40921452 | None:intergenic | 30.0% |
| ! | ATAAGGACGAATTTTACCAA+TGG | - | chr1.4:40923411-40923430 | MS.gene041017:CDS | 30.0% |
| ! | ATTGAGTCAATCTCAGTTTT+AGG | - | chr1.4:40921440-40921459 | MS.gene041017:intron | 30.0% |
| ! | ATTTTACAAGGAACAGAATC+TGG | + | chr1.4:40922382-40922401 | None:intergenic | 30.0% |
| ! | ATTTTCATTGGATATGGAAG+GGG | - | chr1.4:40921495-40921514 | MS.gene041017:CDS | 30.0% |
| !! | AACCAATTTGCAAAAGTACT+GGG | - | chr1.4:40921610-40921629 | MS.gene041017:CDS | 30.0% |
| !! | ACCATTTTGAAAGGAAATGT+TGG | + | chr1.4:40920731-40920750 | None:intergenic | 30.0% |
| !! | GTTACTAAACATTTTTGGGA+TGG | - | chr1.4:40920454-40920473 | MS.gene041017:intron | 30.0% |
| !! | TGTTCTAAGGAAATGAATTC+TGG | - | chr1.4:40920526-40920545 | MS.gene041017:intron | 30.0% |
| !! | TTTGTTGTAAGGTGTTCTTT+TGG | - | chr1.4:40921139-40921158 | MS.gene041017:intron | 30.0% |
| !!! | AGATTTTGAAACAGTGAACT+AGG | + | chr1.4:40920397-40920416 | None:intergenic | 30.0% |
| !!! | CTGAGTGATTTTTTGTTGTA+AGG | - | chr1.4:40921128-40921147 | MS.gene041017:intron | 30.0% |
| AACTAACACATCAGACATGT+TGG | - | chr1.4:40922821-40922840 | MS.gene041017:intron | 35.0% | |
| AAGGGAAATTAAAGCACAAG+TGG | + | chr1.4:40921548-40921567 | None:intergenic | 35.0% | |
| AATCTCAGTGGTTTGAAAAG+AGG | - | chr1.4:40922130-40922149 | MS.gene041017:intron | 35.0% | |
| ACAACCAATCCAATTCTTCT+GGG | - | chr1.4:40920350-40920369 | MS.gene041017:CDS | 35.0% | |
| ACCTATAAGGCTAGAAATTG+TGG | - | chr1.4:40921268-40921287 | MS.gene041017:intron | 35.0% | |
| AGTGTTCAATCGGTTAATAG+AGG | + | chr1.4:40921930-40921949 | None:intergenic | 35.0% | |
| ATCTCAGTGGTTTGAAAAGA+GGG | - | chr1.4:40922131-40922150 | MS.gene041017:intron | 35.0% | |
| ATGGGGACATGTACAATTTA+TGG | - | chr1.4:40921322-40921341 | MS.gene041017:intron | 35.0% | |
| CTAAGATCAGTGAAAGAATG+AGG | - | chr1.4:40922654-40922673 | MS.gene041017:intron | 35.0% | |
| GGACTGCAAGAAATAGAAAA+AGG | + | chr1.4:40923514-40923533 | None:intergenic | 35.0% | |
| GGTTCAAATCTTCTTAGACA+GGG | - | chr1.4:40920682-40920701 | MS.gene041017:intron | 35.0% | |
| GTCTTAACAACCTAAGATTC+AGG | + | chr1.4:40921777-40921796 | None:intergenic | 35.0% | |
| GTGTTCAATCGGTTAATAGA+GGG | + | chr1.4:40921929-40921948 | None:intergenic | 35.0% | |
| GTTTGCTCGTTTATCACTTA+GGG | + | chr1.4:40923535-40923554 | None:intergenic | 35.0% | |
| GTTTGGTTATTTATAGCTGC+AGG | - | chr1.4:40920970-40920989 | MS.gene041017:intron | 35.0% | |
| TAACAACCTAAGATTCAGGT+GGG | + | chr1.4:40921773-40921792 | None:intergenic | 35.0% | |
| TATTAACCGATTGAACACTC+AGG | - | chr1.4:40921931-40921950 | MS.gene041017:CDS | 35.0% | |
| TCAAGAAATGCTTCTTCCTT+GGG | - | chr1.4:40921965-40921984 | MS.gene041017:CDS | 35.0% | |
| TCATTCACAGAAAATCTCAG+TGG | - | chr1.4:40922118-40922137 | MS.gene041017:intron | 35.0% | |
| TCTGATATTCAGGTATGTGT+AGG | - | chr1.4:40922178-40922197 | MS.gene041017:intron | 35.0% | |
| TGGTTCAAATCTTCTTAGAC+AGG | - | chr1.4:40920681-40920700 | MS.gene041017:intron | 35.0% | |
| TTAACAACCTAAGATTCAGG+TGG | + | chr1.4:40921774-40921793 | None:intergenic | 35.0% | |
| TTCAAGAAATGCTTCTTCCT+TGG | - | chr1.4:40921964-40921983 | MS.gene041017:CDS | 35.0% | |
| TTGTGAATTGATCGCGAATT+AGG | - | chr1.4:40921584-40921603 | MS.gene041017:CDS | 35.0% | |
| ! | AGTTTGCTCGTTTATCACTT+AGG | + | chr1.4:40923536-40923555 | None:intergenic | 35.0% |
| ! | ATCATCTCAGATGAAGTGTT+TGG | + | chr1.4:40922334-40922353 | None:intergenic | 35.0% |
| ! | ATCCCAGTACTTTTGCAAAT+TGG | + | chr1.4:40921615-40921634 | None:intergenic | 35.0% |
| ! | GAACCAATTTGCAAAAGTAC+TGG | - | chr1.4:40921609-40921628 | MS.gene041017:CDS | 35.0% |
| ! | TGATGATGTGGAATTTCATG+TGG | - | chr1.4:40923080-40923099 | MS.gene041017:intron | 35.0% |
| ! | TTCATCTGAGATGATTGCTA+TGG | - | chr1.4:40922339-40922358 | MS.gene041017:intron | 35.0% |
| !! | AAGGAAGAAGCATTTCTTGA+AGG | + | chr1.4:40921965-40921984 | None:intergenic | 35.0% |
| !! | AATGGTATAGAAGTGTTTGG+AGG | - | chr1.4:40922770-40922789 | MS.gene041017:intron | 35.0% |
| !! | ACCACAATTTCTAGCCTTAT+AGG | + | chr1.4:40921272-40921291 | None:intergenic | 35.0% |
| !! | AGGAAGAAGCATTTCTTGAA+GGG | + | chr1.4:40921964-40921983 | None:intergenic | 35.0% |
| !! | GTGATTATGAGCTTAGCTTT+TGG | - | chr1.4:40921685-40921704 | MS.gene041017:intron | 35.0% |
| !! | TATCTCTGAAATAGATAGCG+AGG | - | chr1.4:40922000-40922019 | MS.gene041017:CDS | 35.0% |
| !! | TTCTGGTTCATCTTGTTCTA+AGG | - | chr1.4:40920513-40920532 | MS.gene041017:intron | 35.0% |
| !! | TTTGCAAAAGTACTGGGATT+TGG | - | chr1.4:40921616-40921635 | MS.gene041017:CDS | 35.0% |
| !! | TTTGGATTGGTTGGTTCATT+GGG | - | chr1.4:40920625-40920644 | MS.gene041017:intron | 35.0% |
| !!! | TTTTGGATTGGTTGGTTCAT+TGG | - | chr1.4:40920624-40920643 | MS.gene041017:intron | 35.0% |
| AAAAGCTCGGGTGACAAAAA+GGG | + | chr1.4:40921566-40921585 | None:intergenic | 40.0% | |
| AAATACCAGGTTCGATTTCC+AGG | + | chr1.4:40920894-40920913 | None:intergenic | 40.0% | |
| AACGGTGATTCTACTCACTA+TGG | - | chr1.4:40922058-40922077 | MS.gene041017:intron | 40.0% | |
| AATACCAGGTTCGATTTCCA+GGG | + | chr1.4:40920893-40920912 | None:intergenic | 40.0% | |
| AGGTAACCTGAGTGTTCAAT+CGG | + | chr1.4:40921940-40921959 | None:intergenic | 40.0% | |
| ATAGTTTCCAACGCCTTTCA+TGG | + | chr1.4:40921873-40921892 | None:intergenic | 40.0% | |
| CAAATGTATGAGGATGCAGA+AGG | - | chr1.4:40923557-40923576 | MS.gene041017:CDS | 40.0% | |
| CAATCCAAAAGAACCATCCA+TGG | + | chr1.4:40920614-40920633 | None:intergenic | 40.0% | |
| CACAACCAATCCAATTCTTC+TGG | - | chr1.4:40920349-40920368 | MS.gene041017:CDS | 40.0% | |
| CATTATCCTAGACATGGTTC+TGG | - | chr1.4:40920571-40920590 | MS.gene041017:intron | 40.0% | |
| CCAAACCAAACCAAGTTGTT+TGG | + | chr1.4:40920956-40920975 | None:intergenic | 40.0% | |
| CGATCAATTCACAAAAGCTC+GGG | + | chr1.4:40921578-40921597 | None:intergenic | 40.0% | |
| GAGCAAACTGCAAATGTATG+AGG | - | chr1.4:40923547-40923566 | MS.gene041017:CDS | 40.0% | |
| GATATGTGACAACATTCCCA+AGG | + | chr1.4:40921984-40922003 | None:intergenic | 40.0% | |
| GCGATCAATTCACAAAAGCT+CGG | + | chr1.4:40921579-40921598 | None:intergenic | 40.0% | |
| GCTTGTTCCAAACATGGATA+AGG | - | chr1.4:40922688-40922707 | MS.gene041017:intron | 40.0% | |
| TCACCAGAAGAAGGAAAAGA+AGG | + | chr1.4:40920424-40920443 | None:intergenic | 40.0% | |
| TGATATCCCACCTGAATCTT+AGG | - | chr1.4:40921764-40921783 | MS.gene041017:CDS | 40.0% | |
| TGTAAAATTCGAGCGAAACG+AGG | - | chr1.4:40922394-40922413 | MS.gene041017:intron | 40.0% | |
| ! | ACACCTTCTTTTCCTTCTTC+TGG | - | chr1.4:40920418-40920437 | MS.gene041017:intron | 40.0% |
| ! | ATGAATTCTGGTTATGGTGC+TGG | - | chr1.4:40920538-40920557 | MS.gene041017:intron | 40.0% |
| ! | ATTGGTTGGTTCATTGGGAA+TGG | - | chr1.4:40920630-40920649 | MS.gene041017:intron | 40.0% |
| ! | CATGGATGGTTCTTTTGGAT+TGG | - | chr1.4:40920612-40920631 | MS.gene041017:intron | 40.0% |
| ! | CGTTTCGCTCGAATTTTACA+AGG | + | chr1.4:40922394-40922413 | None:intergenic | 40.0% |
| ! | GAACCATGTCTAGGATAATG+AGG | + | chr1.4:40920571-40920590 | None:intergenic | 40.0% |
| ! | GTAGCCCTTAAATGATGATG+TGG | - | chr1.4:40923068-40923087 | MS.gene041017:intron | 40.0% |
| ! | TTCTACTTCAAGTTCTGCCA+TGG | - | chr1.4:40920594-40920613 | MS.gene041017:intron | 40.0% |
| !! | AGAAGCATTTCTTGAAGGGA+AGG | + | chr1.4:40921960-40921979 | None:intergenic | 40.0% |
| !! | CCAAACAACTTGGTTTGGTT+TGG | - | chr1.4:40920953-40920972 | MS.gene041017:intron | 40.0% |
| !! | TTTTCTACCATGAAAGGCGT+TGG | - | chr1.4:40921863-40921882 | MS.gene041017:CDS | 40.0% |
| !!! | ACTTGTTTTACTCATCAGCG+TGG | - | chr1.4:40922262-40922281 | MS.gene041017:intron | 40.0% |
| !!! | GAGTCAATCTCAGTTTTAGG+TGG | - | chr1.4:40921443-40921462 | MS.gene041017:intron | 40.0% |
| !!! | GATGGTTCTTTTGGATTGGT+TGG | - | chr1.4:40920616-40920635 | MS.gene041017:intron | 40.0% |
| ACATAATTCGCCGCATTCAC+CGG | + | chr1.4:40921667-40921686 | None:intergenic | 45.0% | |
| ACGAAGCAACCCAGAAGAAT+TGG | + | chr1.4:40920362-40920381 | None:intergenic | 45.0% | |
| ATACCAGGTTCGATTTCCAG+GGG | + | chr1.4:40920892-40920911 | None:intergenic | 45.0% | |
| ATGTTGGAGAAAAGACCAGC+AGG | + | chr1.4:40920715-40920734 | None:intergenic | 45.0% | |
| ATTAGTCGCCTACCATTGGT+GGG | + | chr1.4:40920827-40920846 | None:intergenic | 45.0% | |
| CAAAAGCTCGGGTGACAAAA+AGG | + | chr1.4:40921567-40921586 | None:intergenic | 45.0% | |
| CACATCAGACATGTTGGACT+TGG | - | chr1.4:40922827-40922846 | MS.gene041017:intron | 45.0% | |
| CATTGGATATGGAAGGGGAT+TGG | - | chr1.4:40921500-40921519 | MS.gene041017:CDS | 45.0% | |
| CCACCTCATTATCCTAGACA+TGG | - | chr1.4:40920565-40920584 | MS.gene041017:intron | 45.0% | |
| CTGGATTCCCCTATAGTTCT+TGG | - | chr1.4:40922083-40922102 | MS.gene041017:intron | 45.0% | |
| GATTCTACTCACTATGGCTC+TGG | - | chr1.4:40922064-40922083 | MS.gene041017:intron | 45.0% | |
| GCAACCCAGAAGAATTGGAT+TGG | + | chr1.4:40920357-40920376 | None:intergenic | 45.0% | |
| GCCACGGTAAATGGTAGTAA+CGG | - | chr1.4:40921893-40921912 | MS.gene041017:CDS | 45.0% | |
| GGAAACTATGCCACGGTAAA+TGG | - | chr1.4:40921884-40921903 | MS.gene041017:CDS | 45.0% | |
| GTAGAACCAGAACCATGTCT+AGG | + | chr1.4:40920580-40920599 | None:intergenic | 45.0% | |
| TGGAGCCAAACAACTTGGTT+TGG | - | chr1.4:40920948-40920967 | MS.gene041017:intron | 45.0% | |
| TGTTGGAGAAAAGACCAGCA+GGG | + | chr1.4:40920714-40920733 | None:intergenic | 45.0% | |
| ! | ACTTCAAGTTCTGCCATGGA+TGG | - | chr1.4:40920598-40920617 | MS.gene041017:intron | 45.0% |
| ! | ATATGGAAGGGGATTGGTGA+AGG | - | chr1.4:40921506-40921525 | MS.gene041017:CDS | 45.0% |
| ! | CCATGTCTAGGATAATGAGG+TGG | + | chr1.4:40920568-40920587 | None:intergenic | 45.0% |
| ! | GCAAGAGCTTGTTCCAAACA+TGG | - | chr1.4:40922682-40922701 | MS.gene041017:intron | 45.0% |
| ! | GCAGGGTTTTCTACCATGAA+AGG | - | chr1.4:40921857-40921876 | MS.gene041017:CDS | 45.0% |
| ! | GTTTTACTCATCAGCGTGGA+GGG | - | chr1.4:40922266-40922285 | MS.gene041017:intron | 45.0% |
| ! | TATGGAAGGGGATTGGTGAA+GGG | - | chr1.4:40921507-40921526 | MS.gene041017:CDS | 45.0% |
| ! | TCTGCCATGGATGGTTCTTT+TGG | - | chr1.4:40920607-40920626 | MS.gene041017:intron | 45.0% |
| ! | TGTTTTACTCATCAGCGTGG+AGG | - | chr1.4:40922265-40922284 | MS.gene041017:intron | 45.0% |
| !! | ATAGCTGCAGGGTGTTCTTT+TGG | - | chr1.4:40920982-40921001 | MS.gene041017:intron | 45.0% |
| !! | TTGAATAATTAATTAATTAA+TGG | - | chr1.4:40922752-40922771 | MS.gene041017:intron | 5.0% |
| !!! | TATTTATTTTACTTTATTTT+TGG | - | chr1.4:40920782-40920801 | MS.gene041017:intron | 5.0% |
| AGTACAAGTTCGCGGTTCTC+CGG | - | chr1.4:40921645-40921664 | MS.gene041017:intron | 50.0% | |
| ATTTCCAGGGGAACAACGCT+TGG | + | chr1.4:40920880-40920899 | None:intergenic | 50.0% | |
| CCAATGGTAGGCGACTAATC+CGG | - | chr1.4:40920828-40920847 | MS.gene041017:intron | 50.0% | |
| GAAGCAACTAGCCCTGATGA+CGG | - | chr1.4:40922028-40922047 | MS.gene041017:CDS | 50.0% | |
| GCCGTTACTACCATTTACCG+TGG | + | chr1.4:40921897-40921916 | None:intergenic | 50.0% | |
| GGTATGCGAGTACAAGTTCG+CGG | - | chr1.4:40921637-40921656 | MS.gene041017:intron | 50.0% | |
| GTATTTCCCGAGTACGTCCT+TGG | - | chr1.4:40920908-40920927 | MS.gene041017:intron | 50.0% | |
| GTTGGAGAAAAGACCAGCAG+GGG | + | chr1.4:40920713-40920732 | None:intergenic | 50.0% | |
| TTAGAGAAGTGGCAGTGTCG+TGG | + | chr1.4:40923109-40923128 | None:intergenic | 50.0% | |
| ! | AAGGGGATTGGTGAAGGGTA+TGG | - | chr1.4:40921512-40921531 | MS.gene041017:CDS | 50.0% |
| ! | ACCAAGTTGTTTGGCTCCAG+TGG | + | chr1.4:40920947-40920966 | None:intergenic | 50.0% |
| ! | ATTGGTTTCCGACCCACCAA+TGG | - | chr1.4:40920812-40920831 | MS.gene041017:intron | 50.0% |
| ! | GATTAGTCGCCTACCATTGG+TGG | + | chr1.4:40920828-40920847 | None:intergenic | 50.0% |
| !! | AGGCGTTGGAAACTATGCCA+CGG | - | chr1.4:40921877-40921896 | MS.gene041017:CDS | 50.0% |
| CGTTGCTACCTCCGTCATCA+GGG | + | chr1.4:40922042-40922061 | None:intergenic | 55.0% | |
| CTAATCCGGCTAGTGCGTAG+AGG | - | chr1.4:40920842-40920861 | MS.gene041017:intron | 55.0% | |
| CTCCTTCCAAGGACGTACTC+GGG | + | chr1.4:40920917-40920936 | None:intergenic | 55.0% | |
| GCCACTGGAGCCAAACAACT+TGG | - | chr1.4:40920943-40920962 | MS.gene041017:intron | 55.0% | |
| GCTCCTTCCAAGGACGTACT+CGG | + | chr1.4:40920918-40920937 | None:intergenic | 55.0% | |
| GGACGTACTCGGGAAATACC+AGG | + | chr1.4:40920907-40920926 | None:intergenic | 55.0% | |
| GTTCCCCTGGAAATCGAACC+TGG | - | chr1.4:40920886-40920905 | MS.gene041017:intron | 55.0% | |
| GTTTCCGACCCACCAATGGT+AGG | - | chr1.4:40920816-40920835 | MS.gene041017:intron | 55.0% | |
| TTCCCGAGTACGTCCTTGGA+AGG | - | chr1.4:40920912-40920931 | MS.gene041017:intron | 55.0% | |
| ! | GTTGTTTGGCTCCAGTGGCA+AGG | + | chr1.4:40920942-40920961 | None:intergenic | 55.0% |
| !! | ATCCTCGAAGCATTGCCGAG+AGG | - | chr1.4:40922428-40922447 | MS.gene041017:intron | 55.0% |
| !! | CCGGATTAGTCGCCTACCAT+TGG | + | chr1.4:40920831-40920850 | None:intergenic | 55.0% |
| !! | CCTGATGACGGAGGTAGCAA+CGG | - | chr1.4:40922040-40922059 | MS.gene041017:CDS | 55.0% |
| !! | TCCTCGAAGCATTGCCGAGA+GGG | - | chr1.4:40922429-40922448 | MS.gene041017:intron | 55.0% |
| ACCCTCTCGGCAATGCTTCG+AGG | + | chr1.4:40922433-40922452 | None:intergenic | 60.0% | |
| ACTCATCAGCGTGGAGGGCT+TGG | - | chr1.4:40922271-40922290 | MS.gene041017:intron | 60.0% | |
| AGACAGGGTAGTTCCCCTGC+TGG | - | chr1.4:40920697-40920716 | MS.gene041017:intron | 60.0% | |
| CCGTTGCTACCTCCGTCATC+AGG | + | chr1.4:40922043-40922062 | None:intergenic | 60.0% | |
| GCATGCCTCTACGCACTAGC+CGG | + | chr1.4:40920850-40920869 | None:intergenic | 60.0% | |
| GTGGCAAGGAGCTCCTTCCA+AGG | + | chr1.4:40920928-40920947 | None:intergenic | 60.0% | |
| TCGCGGTTCTCCGGTGAATG+CGG | - | chr1.4:40921654-40921673 | MS.gene041017:intron | 60.0% | |
| TGGAAGGAGCTCCTTGCCAC+TGG | - | chr1.4:40920928-40920947 | MS.gene041017:intron | 60.0% | |
| ! | GTCGCCTACCATTGGTGGGT+CGG | + | chr1.4:40920823-40920842 | None:intergenic | 60.0% |
| !! | GCAACTAGCCCTGATGACGG+AGG | - | chr1.4:40922031-40922050 | MS.gene041017:CDS | 60.0% |
| ! | CTGGCCAAGCGTTGTTCCCC+TGG | - | chr1.4:40920873-40920892 | MS.gene041017:intron | 65.0% |
| ! | GTGCGTAGAGGCATGCGCAC+TGG | - | chr1.4:40920854-40920873 | MS.gene041017:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 40920325 | 40923596 | 40920325 | ID=MS.gene041017 |
| chr1.4 | mRNA | 40920325 | 40923596 | 40920325 | ID=MS.gene041017.t1;Parent=MS.gene041017 |
| chr1.4 | exon | 40923173 | 40923596 | 40923173 | ID=MS.gene041017.t1.exon1;Parent=MS.gene041017.t1 |
| chr1.4 | CDS | 40923173 | 40923596 | 40923173 | ID=cds.MS.gene041017.t1;Parent=MS.gene041017.t1 |
| chr1.4 | exon | 40921732 | 40922060 | 40921732 | ID=MS.gene041017.t1.exon2;Parent=MS.gene041017.t1 |
| chr1.4 | CDS | 40921732 | 40922060 | 40921732 | ID=cds.MS.gene041017.t1;Parent=MS.gene041017.t1 |
| chr1.4 | exon | 40921471 | 40921641 | 40921471 | ID=MS.gene041017.t1.exon3;Parent=MS.gene041017.t1 |
| chr1.4 | CDS | 40921471 | 40921641 | 40921471 | ID=cds.MS.gene041017.t1;Parent=MS.gene041017.t1 |
| chr1.4 | exon | 40921212 | 40921277 | 40921212 | ID=MS.gene041017.t1.exon4;Parent=MS.gene041017.t1 |
| chr1.4 | CDS | 40921212 | 40921277 | 40921212 | ID=cds.MS.gene041017.t1;Parent=MS.gene041017.t1 |
| chr1.4 | exon | 40921034 | 40921102 | 40921034 | ID=MS.gene041017.t1.exon5;Parent=MS.gene041017.t1 |
| chr1.4 | CDS | 40921034 | 40921102 | 40921034 | ID=cds.MS.gene041017.t1;Parent=MS.gene041017.t1 |
| chr1.4 | exon | 40920325 | 40920390 | 40920325 | ID=MS.gene041017.t1.exon6;Parent=MS.gene041017.t1 |
| chr1.4 | CDS | 40920325 | 40920390 | 40920325 | ID=cds.MS.gene041017.t1;Parent=MS.gene041017.t1 |
| Gene Sequence |
| Protein sequence |
