Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056404.t1 | XP_003606828.2 | 94.3 | 455 | 23 | 1 | 1 | 452 | 1 | 455 | 1.20E-243 | 852 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056404.t1 | Q9NU19 | 49.8 | 325 | 159 | 2 | 127 | 450 | 182 | 503 | 1.0e-89 | 332.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056404.t1 | G7JEW7 | 94.3 | 455 | 23 | 1 | 1 | 452 | 1 | 455 | 8.8e-244 | 852.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056404 | MS.gene056606 | 0.903117 | 4.83E-79 | -1.69E-46 |
| MS.gene056404 | MS.gene28318 | 0.804877 | 1.75E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056404 | MS.gene013282 | PPI |
| MS.gene056404 | MS.gene06367 | PPI |
| MS.gene056404 | MS.gene40923 | PPI |
| MS.gene056404 | MS.gene049260 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056404.t1 | MTR_4g068180 | 96.484 | 455 | 13 | 1 | 1 | 452 | 1 | 455 | 0.0 | 912 |
| MS.gene056404.t1 | MTR_2g099380 | 79.864 | 442 | 87 | 1 | 11 | 452 | 9 | 448 | 0.0 | 744 |
| MS.gene056404.t1 | MTR_2g099380 | 77.607 | 326 | 71 | 1 | 11 | 336 | 9 | 332 | 0.0 | 524 |
| MS.gene056404.t1 | MTR_3g083840 | 26.957 | 345 | 183 | 9 | 138 | 426 | 88 | 419 | 1.35e-26 | 111 |
| MS.gene056404.t1 | MTR_4g114580 | 28.024 | 339 | 175 | 8 | 138 | 420 | 116 | 441 | 2.59e-25 | 108 |
| MS.gene056404.t1 | MTR_8g085300 | 26.216 | 370 | 204 | 8 | 113 | 426 | 74 | 430 | 7.41e-25 | 106 |
| MS.gene056404.t1 | MTR_1g069705 | 27.397 | 292 | 147 | 12 | 120 | 376 | 46 | 307 | 7.76e-18 | 85.9 |
| MS.gene056404.t1 | MTR_6g016590 | 26.642 | 274 | 146 | 8 | 155 | 420 | 87 | 313 | 3.94e-17 | 83.2 |
| MS.gene056404.t1 | MTR_4g115090 | 24.351 | 308 | 192 | 10 | 140 | 436 | 350 | 627 | 2.25e-15 | 79.0 |
| MS.gene056404.t1 | MTR_5g098140 | 25.523 | 239 | 134 | 6 | 148 | 382 | 106 | 304 | 1.32e-14 | 75.9 |
| MS.gene056404.t1 | MTR_2g099185 | 28.402 | 169 | 97 | 3 | 213 | 380 | 372 | 517 | 1.62e-14 | 75.9 |
| MS.gene056404.t1 | MTR_2g099185 | 28.402 | 169 | 97 | 3 | 213 | 380 | 367 | 512 | 1.92e-14 | 75.9 |
| MS.gene056404.t1 | MTR_2g099185 | 28.402 | 169 | 97 | 3 | 213 | 380 | 367 | 512 | 3.17e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056404.t1 | AT2G30710 | 73.903 | 433 | 108 | 3 | 20 | 452 | 13 | 440 | 0.0 | 679 |
| MS.gene056404.t1 | AT1G04830 | 27.160 | 405 | 224 | 10 | 80 | 426 | 43 | 434 | 1.03e-30 | 123 |
| MS.gene056404.t1 | AT1G04830 | 27.160 | 405 | 224 | 10 | 80 | 426 | 43 | 434 | 1.17e-30 | 123 |
| MS.gene056404.t1 | AT4G13730 | 25.507 | 345 | 199 | 6 | 127 | 426 | 96 | 427 | 6.94e-25 | 107 |
| MS.gene056404.t1 | AT4G13730 | 25.000 | 356 | 198 | 7 | 127 | 426 | 96 | 438 | 8.22e-23 | 100 |
| MS.gene056404.t1 | AT1G04830 | 25.676 | 370 | 231 | 9 | 80 | 426 | 43 | 391 | 2.29e-20 | 93.2 |
| MS.gene056404.t1 | AT4G13730 | 25.159 | 314 | 166 | 7 | 127 | 384 | 96 | 396 | 1.09e-18 | 88.2 |
| MS.gene056404.t1 | AT3G02460 | 26.277 | 274 | 147 | 8 | 155 | 420 | 88 | 314 | 1.45e-18 | 87.4 |
| MS.gene056404.t1 | AT3G02460 | 26.277 | 274 | 147 | 8 | 155 | 420 | 88 | 314 | 2.05e-18 | 86.7 |
| MS.gene056404.t1 | AT5G15930 | 25.275 | 273 | 151 | 8 | 155 | 420 | 85 | 311 | 4.55e-17 | 82.8 |
| MS.gene056404.t1 | AT3G02460 | 26.383 | 235 | 123 | 6 | 155 | 382 | 88 | 279 | 7.02e-17 | 81.6 |
| MS.gene056404.t1 | AT3G02460 | 26.068 | 234 | 123 | 6 | 155 | 381 | 88 | 278 | 2.74e-16 | 79.7 |
| MS.gene056404.t1 | AT3G02460 | 25.301 | 249 | 136 | 6 | 155 | 396 | 88 | 293 | 3.18e-16 | 80.1 |
| MS.gene056404.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 3.74e-16 | 80.5 |
| MS.gene056404.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 3.74e-16 | 80.5 |
| MS.gene056404.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 3.74e-16 | 80.5 |
| MS.gene056404.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 3.74e-16 | 80.5 |
| MS.gene056404.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 3.74e-16 | 80.5 |
| MS.gene056404.t1 | AT2G43490 | 28.994 | 169 | 96 | 3 | 213 | 380 | 355 | 500 | 3.45e-14 | 75.5 |
| MS.gene056404.t1 | AT2G43490 | 28.994 | 169 | 96 | 3 | 213 | 380 | 355 | 500 | 3.45e-14 | 75.5 |
| MS.gene056404.t1 | AT2G43490 | 28.994 | 169 | 96 | 3 | 213 | 380 | 359 | 504 | 3.48e-14 | 75.5 |
| MS.gene056404.t1 | AT2G43490 | 28.994 | 169 | 96 | 3 | 213 | 380 | 359 | 504 | 3.76e-14 | 75.1 |
| MS.gene056404.t1 | AT2G43490 | 28.994 | 169 | 96 | 3 | 213 | 380 | 359 | 504 | 3.95e-14 | 75.1 |
| MS.gene056404.t1 | AT2G43490 | 28.994 | 169 | 96 | 3 | 213 | 380 | 359 | 504 | 3.95e-14 | 75.1 |
| MS.gene056404.t1 | AT2G43490 | 28.994 | 169 | 96 | 3 | 213 | 380 | 359 | 504 | 3.95e-14 | 75.1 |
| MS.gene056404.t1 | AT2G43490 | 28.994 | 169 | 96 | 3 | 213 | 380 | 359 | 504 | 3.95e-14 | 75.1 |
| MS.gene056404.t1 | AT3G59570 | 28.402 | 169 | 97 | 3 | 213 | 380 | 363 | 508 | 2.90e-13 | 72.4 |
| MS.gene056404.t1 | AT3G59570 | 28.402 | 169 | 97 | 3 | 213 | 380 | 363 | 508 | 3.54e-13 | 72.4 |
| MS.gene056404.t1 | AT3G59570 | 28.402 | 169 | 97 | 3 | 213 | 380 | 363 | 508 | 3.67e-13 | 72.0 |
| MS.gene056404.t1 | AT5G52580 | 24.232 | 293 | 181 | 10 | 140 | 419 | 358 | 622 | 5.52e-13 | 71.6 |
| MS.gene056404.t1 | AT5G52580 | 24.232 | 293 | 181 | 10 | 140 | 419 | 375 | 639 | 6.23e-13 | 71.2 |
| MS.gene056404.t1 | AT5G52580 | 24.232 | 293 | 181 | 10 | 140 | 419 | 364 | 628 | 6.51e-13 | 71.2 |
| MS.gene056404.t1 | AT2G37290 | 24.896 | 241 | 140 | 6 | 146 | 383 | 308 | 510 | 7.05e-13 | 71.2 |
| MS.gene056404.t1 | AT2G37290 | 24.896 | 241 | 140 | 6 | 146 | 383 | 308 | 510 | 7.50e-13 | 71.2 |
| MS.gene056404.t1 | AT4G28550 | 26.744 | 172 | 99 | 4 | 212 | 380 | 166 | 313 | 1.28e-12 | 69.3 |
| MS.gene056404.t1 | AT4G28550 | 27.326 | 172 | 98 | 4 | 212 | 380 | 166 | 313 | 2.81e-12 | 68.6 |
| MS.gene056404.t1 | AT2G20440 | 26.316 | 171 | 99 | 4 | 213 | 380 | 51 | 197 | 7.63e-12 | 66.6 |
| MS.gene056404.t1 | AT4G28550 | 27.811 | 169 | 95 | 5 | 212 | 377 | 166 | 310 | 9.38e-12 | 66.6 |
| MS.gene056404.t1 | AT2G20440 | 26.316 | 171 | 99 | 4 | 213 | 380 | 167 | 313 | 2.37e-11 | 65.9 |
| MS.gene056404.t1 | AT2G20440 | 26.316 | 171 | 99 | 4 | 213 | 380 | 167 | 313 | 2.37e-11 | 65.9 |
| MS.gene056404.t1 | AT2G20440 | 25.926 | 189 | 105 | 6 | 213 | 398 | 167 | 323 | 9.19e-11 | 63.5 |
Find 108 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCTTCAATTTGCTTTC+CGG | 0.153454 | 4.1:-33829545 | MS.gene056404:CDS |
| AAGTTCAATAAGGTGCTTTC+TGG | 0.158641 | 4.1:-33832188 | MS.gene056404:CDS |
| CCCTCCTTTCTATCTGAATT+AGG | 0.240906 | 4.1:+33831101 | None:intergenic |
| TCTGGAACAGTGGTTATATT+AGG | 0.280287 | 4.1:-33832170 | MS.gene056404:intron |
| ACCTCGAGATGGTGCTTTCC+CGG | 0.286815 | 4.1:-33828404 | MS.gene056404:CDS |
| TCGTCTGAACGTTCTGAATC+TGG | 0.317488 | 4.1:+33831020 | None:intergenic |
| ACTTCTGAACTTGCTGTTGC+TGG | 0.321062 | 4.1:+33830845 | None:intergenic |
| AAGAGGAGTCTCCACACTTT+AGG | 0.321748 | 4.1:+33831520 | None:intergenic |
| CCCTGAACATATCCACTTGC+AGG | 0.326350 | 4.1:+33830259 | None:intergenic |
| AAAACAAGCCTCTGAATTCC+AGG | 0.327397 | 4.1:+33830055 | None:intergenic |
| TTTATATCAGAACACTTAGA+AGG | 0.337221 | 4.1:-33830202 | MS.gene056404:CDS |
| ACTCAAGAGCTTGGAATTCC+AGG | 0.337608 | 4.1:-33828478 | MS.gene056404:CDS |
| AGATAGAAAGGAGGGAGTTC+TGG | 0.339166 | 4.1:-33831093 | MS.gene056404:CDS |
| TTGATCTCATCACACGCCTT+TGG | 0.368239 | 4.1:-33829070 | MS.gene056404:CDS |
| TCCTCTATATGTTGTGAAAC+AGG | 0.369650 | 4.1:+33829579 | None:intergenic |
| TGATCTCATCACACGCCTTT+GGG | 0.373855 | 4.1:-33829069 | MS.gene056404:CDS |
| TCTGCTCATCAATACTTTAC+CGG | 0.374779 | 4.1:+33832562 | None:intergenic |
| TCCTGCAAGTGGATATGTTC+AGG | 0.375547 | 4.1:-33830260 | MS.gene056404:CDS |
| GGTATACTTGCGGGTGTCTT+CGG | 0.387375 | 4.1:+33832247 | None:intergenic |
| AATATATACACAAGGAAGTC+TGG | 0.401217 | 4.1:+33829017 | None:intergenic |
| AGAGGAGTCTCCACACTTTA+GGG | 0.401637 | 4.1:+33831521 | None:intergenic |
| TCGTAGAGTCTGGCTGAATC+TGG | 0.401808 | 4.1:+33833438 | None:intergenic |
| ACTTTAGGGCGCATATAATC+TGG | 0.407268 | 4.1:+33831535 | None:intergenic |
| AACACCTTCCAACTCAGAAC+TGG | 0.415204 | 4.1:-33828437 | MS.gene056404:CDS |
| GAATTGGTCAGGAGGATAGA+TGG | 0.417574 | 4.1:-33830022 | MS.gene056404:intron |
| GTAACGTCAGGTACAGTTCT+TGG | 0.418419 | 4.1:+33830874 | None:intergenic |
| TTAAATTGAAGGAATTGGTC+AGG | 0.419755 | 4.1:-33830033 | MS.gene056404:CDS |
| AAGAGTTACAAAGTTCAATA+AGG | 0.425239 | 4.1:-33832198 | MS.gene056404:CDS |
| GATAGAAAGGAGGGAGTTCT+GGG | 0.432601 | 4.1:-33831092 | MS.gene056404:CDS |
| TTCACAACATATAGAGGATC+AGG | 0.434173 | 4.1:-33829574 | MS.gene056404:CDS |
| AGCGCCAATGGTATACTTGC+GGG | 0.444539 | 4.1:+33832238 | None:intergenic |
| CTTGAACGTTTCGTAGAGTC+TGG | 0.447323 | 4.1:+33833428 | None:intergenic |
| GCTCACCGTGAGAAGGAAAC+TGG | 0.462813 | 4.1:+33828992 | None:intergenic |
| TGCTGTGCCACATAAATGCC+CGG | 0.464703 | 4.1:+33828385 | None:intergenic |
| TCTGAGTTGGAAGGTGTTGA+AGG | 0.469826 | 4.1:+33828442 | None:intergenic |
| TGGCGCTAGAGCTACGGATT+CGG | 0.472648 | 4.1:-33832222 | MS.gene056404:CDS |
| TGCCAGCTCAGCTAGTGAAA+TGG | 0.472830 | 4.1:+33828343 | None:intergenic |
| TGCTTTCCCGGGCATTTATG+TGG | 0.472854 | 4.1:-33828392 | MS.gene056404:CDS |
| TATCCTCAACATTCTACAAA+AGG | 0.477199 | 4.1:-33832505 | MS.gene056404:CDS |
| ACAAATTGCGTGAATTAGCT+TGG | 0.484787 | 4.1:-33831567 | MS.gene056404:CDS |
| GCCTGTTTCACAACATATAG+AGG | 0.486010 | 4.1:-33829580 | MS.gene056404:CDS |
| GAGCTTGGAATTCCAGGAGT+TGG | 0.490575 | 4.1:-33828472 | MS.gene056404:CDS |
| CAGACTCTACGAAACGTTCA+AGG | 0.491397 | 4.1:-33833427 | MS.gene056404:CDS |
| GGCACAAGTGATCAGATATC+TGG | 0.493498 | 4.1:-33832461 | MS.gene056404:CDS |
| GTCAGACAAACTCAAGAGCT+TGG | 0.494238 | 4.1:-33828487 | MS.gene056404:CDS |
| CCTCGAGATGGTGCTTTCCC+GGG | 0.496826 | 4.1:-33828403 | MS.gene056404:CDS |
| CTGCTCATCAATACTTTACC+GGG | 0.500375 | 4.1:+33832563 | None:intergenic |
| CATTACACATTTGCTCAACC+TGG | 0.502850 | 4.1:-33830073 | MS.gene056404:CDS |
| ACCACCTAATTCAGATAGAA+AGG | 0.505337 | 4.1:-33831105 | MS.gene056404:CDS |
| ATGTAGAGGCTGATTGCTAC+TGG | 0.506715 | 4.1:-33830129 | MS.gene056404:CDS |
| ACAGCAAGTTCAGAAGTCAT+TGG | 0.510801 | 4.1:-33830839 | MS.gene056404:CDS |
| TACCATTGGCGCTAGAGCTA+CGG | 0.513971 | 4.1:-33832228 | MS.gene056404:CDS |
| TAAGGTGCTTTCTGGAACAG+TGG | 0.515552 | 4.1:-33832180 | MS.gene056404:CDS |
| ATCCGTAGCTCTAGCGCCAA+TGG | 0.518827 | 4.1:+33832226 | None:intergenic |
| CCTGCAAGTGGATATGTTCA+GGG | 0.519081 | 4.1:-33830259 | MS.gene056404:CDS |
| AAAGCACCATCTCGAGGTCC+TGG | 0.520492 | 4.1:+33828409 | None:intergenic |
| CTCAAAGGTCGTAGCATGCC+CGG | 0.521571 | 4.1:-33832581 | MS.gene056404:CDS |
| AGGCGTGTGATGAGATCAAA+TGG | 0.521736 | 4.1:+33829074 | None:intergenic |
| GAAGGAACATTACCAACTCC+TGG | 0.524180 | 4.1:+33828460 | None:intergenic |
| TGGTGAGTCCAGTTCTGAGT+TGG | 0.526407 | 4.1:+33828429 | None:intergenic |
| GAAAGGAGGGAGTTCTGGGA+AGG | 0.535564 | 4.1:-33831088 | MS.gene056404:CDS |
| TTATATCAGAACACTTAGAA+GGG | 0.537210 | 4.1:-33830201 | MS.gene056404:CDS |
| ATTTGCCAGTTTCCTTCTCA+CGG | 0.538122 | 4.1:-33828997 | MS.gene056404:intron |
| TCCTTTCTATCTGAATTAGG+TGG | 0.539605 | 4.1:+33831104 | None:intergenic |
| TTTGAGTTCAAGTTATCAGA+AGG | 0.541216 | 4.1:+33832530 | None:intergenic |
| TGAGGTCAACATGCTTCGCC+AGG | 0.546292 | 4.1:-33830997 | MS.gene056404:intron |
| GCTCAGCTAGTGAAATGGCT+TGG | 0.546399 | 4.1:+33828348 | None:intergenic |
| AACTCAGAACTGGACTCACC+AGG | 0.554419 | 4.1:-33828427 | MS.gene056404:CDS |
| TAAAGTGTGGAGACTCCTCT+TGG | 0.555773 | 4.1:-33831518 | MS.gene056404:intron |
| TGCTGGAAGAATGTAACGTC+AGG | 0.556481 | 4.1:+33830862 | None:intergenic |
| TTCTTCAATTTGCTTTCCGG+TGG | 0.556488 | 4.1:-33829542 | MS.gene056404:CDS |
| CAGGTTGAGCAAATGTGTAA+TGG | 0.558220 | 4.1:+33830074 | None:intergenic |
| TAGCGCCAATGGTATACTTG+CGG | 0.569347 | 4.1:+33832237 | None:intergenic |
| TCAGATATCTGGTGCAGTAG+AGG | 0.573878 | 4.1:-33832450 | MS.gene056404:intron |
| GGAGTTCTGGGAAGGAAGCG+CGG | 0.577143 | 4.1:-33831080 | MS.gene056404:CDS |
| CTAGCTAGCTCACCGTGAGA+AGG | 0.578541 | 4.1:+33828985 | None:intergenic |
| AGTTTCTCACACAATGATGC+TGG | 0.578928 | 4.1:-33832482 | MS.gene056404:CDS |
| TTTAAATCAAGGTTGCTCAA+AGG | 0.582230 | 4.1:-33832596 | MS.gene056404:intron |
| TACAGTTCTTGGACAATCAA+CGG | 0.584447 | 4.1:+33830885 | None:intergenic |
| GACACCCGCAAGTATACCAT+TGG | 0.585744 | 4.1:-33832242 | MS.gene056404:CDS |
| TGGAACGTATTCTTTATGCA+TGG | 0.587229 | 4.1:-33830819 | MS.gene056404:intron |
| TTCTGATAACTTGAACTCAA+AGG | 0.587378 | 4.1:-33832528 | MS.gene056404:CDS |
| TTGCTCAACCTGGAATTCAG+AGG | 0.589516 | 4.1:-33830063 | MS.gene056404:CDS |
| CCTAATTCAGATAGAAAGGA+GGG | 0.596459 | 4.1:-33831101 | MS.gene056404:CDS |
| TCAAAAGACAGTTGAACCAC+CGG | 0.600802 | 4.1:+33829526 | None:intergenic |
| GTAAAGTATTGATGAGCAGA+AGG | 0.604241 | 4.1:-33832559 | MS.gene056404:CDS |
| GACTCACCAGGACCTCGAGA+TGG | 0.605820 | 4.1:-33828415 | MS.gene056404:CDS |
| ATTATATGCGCCCTAAAGTG+TGG | 0.607591 | 4.1:-33831531 | MS.gene056404:CDS |
| AATTGAAGGAATTGGTCAGG+AGG | 0.609370 | 4.1:-33830030 | MS.gene056404:CDS |
| AGACAAAATCTCTAATGTAG+AGG | 0.611644 | 4.1:-33830143 | MS.gene056404:CDS |
| GCAATTCGACATCCTGCAAG+TGG | 0.611813 | 4.1:-33830271 | MS.gene056404:CDS |
| TGGGACACATATCTAGCTGA+AGG | 0.612669 | 4.1:-33829050 | MS.gene056404:CDS |
| GGAATCAAGAGCAGCAACAG+TGG | 0.617880 | 4.1:+33833459 | None:intergenic |
| ACCTAATTCAGATAGAAAGG+AGG | 0.625011 | 4.1:-33831102 | MS.gene056404:CDS |
| TATATCAGAACACTTAGAAG+GGG | 0.625153 | 4.1:-33830200 | MS.gene056404:CDS |
| CAGCTAGATATGTGTCCCAA+AGG | 0.627022 | 4.1:+33829054 | None:intergenic |
| GCTGTGCCACATAAATGCCC+GGG | 0.632407 | 4.1:+33828386 | None:intergenic |
| GAGTCCAGTTCTGAGTTGGA+AGG | 0.640965 | 4.1:+33828433 | None:intergenic |
| ATATCAGAACACTTAGAAGG+GGG | 0.643161 | 4.1:-33830199 | MS.gene056404:CDS |
| CCCGGGAAAGCACCATCTCG+AGG | 0.648223 | 4.1:+33828403 | None:intergenic |
| TCACAACATATAGAGGATCA+GGG | 0.651098 | 4.1:-33829573 | MS.gene056404:CDS |
| TGTTTGTCGAAGTTGCTCGA+CGG | 0.654377 | 4.1:-33830106 | MS.gene056404:CDS |
| TTCAGAACGTTCAGACGATG+AGG | 0.654756 | 4.1:-33831015 | MS.gene056404:CDS |
| ATACACAAGGAAGTCTGGCA+AGG | 0.657164 | 4.1:+33829022 | None:intergenic |
| CTGCAAGTGGATATGTTCAG+GGG | 0.657901 | 4.1:-33830258 | MS.gene056404:CDS |
| AGACTCTACGAAACGTTCAA+GGG | 0.665190 | 4.1:-33833426 | MS.gene056404:intron |
| AACTGGCAAATATATACACA+AGG | 0.671598 | 4.1:+33829009 | None:intergenic |
| TTGCGTGAATTAGCTTGGAG+TGG | 0.688224 | 4.1:-33831562 | MS.gene056404:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAATTTTTATATATATT+TGG | - | chr4.1:33828624-33828643 | MS.gene056404:intron | 0.0% |
| !!! | AATATATTATTTTAGTGAAA+AGG | + | chr4.1:33832896-33832915 | None:intergenic | 10.0% |
| !!! | ATTTATTTCTTTATTTAATC+TGG | - | chr4.1:33829887-33829906 | MS.gene056404:intron | 10.0% |
| !!! | TATATATATTTTTACTTTAG+TGG | - | chr4.1:33833340-33833359 | MS.gene056404:intron | 10.0% |
| !! | ATAACTAATTTCAACTTATA+TGG | + | chr4.1:33832498-33832517 | None:intergenic | 15.0% |
| !! | GATATAAAAACAACTAAAAA+TGG | + | chr4.1:33831635-33831654 | None:intergenic | 15.0% |
| !! | GTTATATAGAAAATCATTAA+GGG | - | chr4.1:33830631-33830650 | MS.gene056404:intron | 15.0% |
| !! | TCTCAATTAAAATAATTGTA+TGG | + | chr4.1:33832597-33832616 | None:intergenic | 15.0% |
| !! | TGTTATATAGAAAATCATTA+AGG | - | chr4.1:33830630-33830649 | MS.gene056404:intron | 15.0% |
| !! | TTATATAGAAAATCATTAAG+GGG | - | chr4.1:33830632-33830651 | MS.gene056404:intron | 15.0% |
| !!! | AAAAAGTTTTAGATAAAAGA+GGG | + | chr4.1:33830014-33830033 | None:intergenic | 15.0% |
| !!! | AACATATACAAGATTAATTT+TGG | - | chr4.1:33832561-33832580 | MS.gene056404:CDS | 15.0% |
| !!! | AATTTTTCAATTTTTTGTCA+GGG | - | chr4.1:33831556-33831575 | MS.gene056404:CDS | 15.0% |
| !!! | TAAAAAGTTTTAGATAAAAG+AGG | + | chr4.1:33830015-33830034 | None:intergenic | 15.0% |
| !!! | TAATTTTTCAATTTTTTGTC+AGG | - | chr4.1:33831555-33831574 | MS.gene056404:CDS | 15.0% |
| !!! | TGAAGACTTAAAAATTATTT+TGG | + | chr4.1:33829100-33829119 | None:intergenic | 15.0% |
| !! | AAGATGTAGGAATAATAATA+TGG | + | chr4.1:33832191-33832210 | None:intergenic | 20.0% |
| !! | AAGGTAAAATGATTAATGTT+TGG | - | chr4.1:33828947-33828966 | MS.gene056404:intron | 20.0% |
| !! | AATGAATGAATGTAATAAAG+AGG | + | chr4.1:33828573-33828592 | None:intergenic | 20.0% |
| !! | AATTGTGTATCTTTAACTAA+TGG | + | chr4.1:33832128-33832147 | None:intergenic | 20.0% |
| !! | AGATTATATTTCAAAGATGT+AGG | + | chr4.1:33832204-33832223 | None:intergenic | 20.0% |
| !! | ATGAATGAATGTAATAAAGA+GGG | + | chr4.1:33828572-33828591 | None:intergenic | 20.0% |
| !! | CAGTTTATCTTTAAATTTCA+AGG | + | chr4.1:33830709-33830728 | None:intergenic | 20.0% |
| !! | GAATTGAATTATAAGAATGA+TGG | + | chr4.1:33828488-33828507 | None:intergenic | 20.0% |
| !! | TAAATTGTGATTGTTATGAT+GGG | + | chr4.1:33829970-33829989 | None:intergenic | 20.0% |
| !! | TATAAAGGAAAAAATTGTCA+GGG | + | chr4.1:33832362-33832381 | None:intergenic | 20.0% |
| !! | TCAAATTAACCTACTTATAA+AGG | + | chr4.1:33832377-33832396 | None:intergenic | 20.0% |
| !! | TTAAATTGTGATTGTTATGA+TGG | + | chr4.1:33829971-33829990 | None:intergenic | 20.0% |
| !! | TTATAAAGGAAAAAATTGTC+AGG | + | chr4.1:33832363-33832382 | None:intergenic | 20.0% |
| !! | TTTATGTTCTCTTTAAATCA+AGG | - | chr4.1:33829242-33829261 | MS.gene056404:intron | 20.0% |
| !!! | AGTATCTCAAATTATTTCTA+AGG | - | chr4.1:33829834-33829853 | MS.gene056404:intron | 20.0% |
| !!! | ATATACAAGATTAATTTTGG+AGG | - | chr4.1:33832564-33832583 | MS.gene056404:CDS | 20.0% |
| !!! | CAATTTTTTCCTTTATAAGT+AGG | - | chr4.1:33832365-33832384 | MS.gene056404:intron | 20.0% |
| !!! | TCTAGTTTAAAATGAGTTTA+AGG | - | chr4.1:33828928-33828947 | MS.gene056404:intron | 20.0% |
| !!! | TGTTTTTAAATTGAAGGAAT+TGG | - | chr4.1:33831811-33831830 | MS.gene056404:intron | 20.0% |
| !!! | TTCAATTTTCCTATGTATTT+GGG | - | chr4.1:33829718-33829737 | MS.gene056404:intron | 20.0% |
| !!! | TTCTTTATTTAATCTGGATT+TGG | - | chr4.1:33829893-33829912 | MS.gene056404:intron | 20.0% |
| !!! | TTTAAGTTTTTAAGAGAAGT+AGG | - | chr4.1:33830454-33830473 | MS.gene056404:intron | 20.0% |
| ! | AAATTGTGATTGTTATGATG+GGG | + | chr4.1:33829969-33829988 | None:intergenic | 25.0% |
| ! | AACACTAGACTAAGAATATT+GGG | + | chr4.1:33831084-33831103 | None:intergenic | 25.0% |
| ! | AAGAGTTACAAAGTTCAATA+AGG | - | chr4.1:33829651-33829670 | MS.gene056404:intron | 25.0% |
| ! | AATATCATAAATTGTGAGCA+AGG | + | chr4.1:33830151-33830170 | None:intergenic | 25.0% |
| ! | ACAAAATGTTGTCTATAAGA+AGG | + | chr4.1:33830683-33830702 | None:intergenic | 25.0% |
| ! | ACAACTACAATAATCAGATA+TGG | + | chr4.1:33829776-33829795 | None:intergenic | 25.0% |
| ! | ACAGTATTTAAAAAGCAAGT+AGG | + | chr4.1:33831328-33831347 | None:intergenic | 25.0% |
| ! | ATAATCAGATATGGTCATTT+AGG | + | chr4.1:33829767-33829786 | None:intergenic | 25.0% |
| ! | ATGGTATGAAATCCATATAT+AGG | + | chr4.1:33831925-33831944 | None:intergenic | 25.0% |
| ! | ATTCTTATCTTGATTGTTTG+TGG | - | chr4.1:33830893-33830912 | MS.gene056404:intron | 25.0% |
| ! | CAAAAAATATCAATAGGCTA+AGG | + | chr4.1:33830091-33830110 | None:intergenic | 25.0% |
| ! | TACAAATCCTAACTTTAAGT+TGG | - | chr4.1:33829024-33829043 | MS.gene056404:CDS | 25.0% |
| ! | TCATATGAAGCATGATAATA+AGG | - | chr4.1:33830417-33830436 | MS.gene056404:intron | 25.0% |
| ! | TGAAAACTTGAGAATAGAAA+TGG | + | chr4.1:33831944-33831963 | None:intergenic | 25.0% |
| ! | TTAAAGATAAACTGACAACA+GGG | - | chr4.1:33830715-33830734 | MS.gene056404:intron | 25.0% |
| ! | TTATATCAGAACACTTAGAA+GGG | - | chr4.1:33831648-33831667 | MS.gene056404:intron | 25.0% |
| ! | TTTAAAGATAAACTGACAAC+AGG | - | chr4.1:33830714-33830733 | MS.gene056404:intron | 25.0% |
| ! | TTTATATCAGAACACTTAGA+AGG | - | chr4.1:33831647-33831666 | MS.gene056404:intron | 25.0% |
| !! | AAATCAAACCATTTCTAGAA+AGG | + | chr4.1:33831527-33831546 | None:intergenic | 25.0% |
| !! | AAGAGATTTTCTTTTGTATC+GGG | - | chr4.1:33833095-33833114 | MS.gene056404:intron | 25.0% |
| !! | AAGGATGAAATATTTTACAC+TGG | + | chr4.1:33830238-33830257 | None:intergenic | 25.0% |
| !! | AATTTCTTCAATTTGCTTTC+CGG | - | chr4.1:33832304-33832323 | MS.gene056404:CDS | 25.0% |
| !! | ACAAATCCTAACTTTAAGTT+GGG | - | chr4.1:33829025-33829044 | MS.gene056404:CDS | 25.0% |
| !! | ATGAAATATTTTACACTGGT+AGG | + | chr4.1:33830234-33830253 | None:intergenic | 25.0% |
| !! | ATGTTTCTATAAGTTTGATG+TGG | - | chr4.1:33829456-33829475 | MS.gene056404:intron | 25.0% |
| !! | ATTGATTTATGCTCTTACTA+AGG | - | chr4.1:33832726-33832745 | MS.gene056404:intron | 25.0% |
| !! | CTTCAATTTTCCTATGTATT+TGG | - | chr4.1:33829717-33829736 | MS.gene056404:intron | 25.0% |
| !! | GAAGAGATTTTCTTTTGTAT+CGG | - | chr4.1:33833094-33833113 | MS.gene056404:intron | 25.0% |
| !! | GAATTATAAGAATGATGGAA+TGG | + | chr4.1:33828483-33828502 | None:intergenic | 25.0% |
| !! | TAAGGCAAAATCTCAATTTT+GGG | + | chr4.1:33828776-33828795 | None:intergenic | 25.0% |
| !! | TTAAGGCAAAATCTCAATTT+TGG | + | chr4.1:33828777-33828796 | None:intergenic | 25.0% |
| !!! | AAATTATTTTGGTATGTCTG+CGG | + | chr4.1:33829089-33829108 | None:intergenic | 25.0% |
| !!! | ATATTTTTTTGCCCATTTCT+TGG | - | chr4.1:33831057-33831076 | MS.gene056404:CDS | 25.0% |
| !!! | ATTCAGTTTCTAGTTTCTAT+GGG | + | chr4.1:33833319-33833338 | None:intergenic | 25.0% |
| !!! | CATAAAAGTTTTGTTCATTG+AGG | - | chr4.1:33830504-33830523 | MS.gene056404:intron | 25.0% |
| !!! | CTTAGCCTATTGATATTTTT+TGG | - | chr4.1:33830089-33830108 | MS.gene056404:CDS | 25.0% |
| !!! | TCAAATTGATTCGCATAATT+AGG | - | chr4.1:33828535-33828554 | MS.gene056404:intron | 25.0% |
| AACTGGCAAATATATACACA+AGG | + | chr4.1:33832843-33832862 | None:intergenic | 30.0% | |
| AATATATACACAAGGAAGTC+TGG | + | chr4.1:33832835-33832854 | None:intergenic | 30.0% | |
| AATCATTGTCATACCAGTAA+TGG | + | chr4.1:33831249-33831268 | None:intergenic | 30.0% | |
| AATTCATATGTACCAGTTCA+CGG | + | chr4.1:33831435-33831454 | None:intergenic | 30.0% | |
| ACACTAGACTAAGAATATTG+GGG | + | chr4.1:33831083-33831102 | None:intergenic | 30.0% | |
| ACTTCTATTCTTAATACAGG+AGG | - | chr4.1:33829498-33829517 | MS.gene056404:intron | 30.0% | |
| ACTTGATATGTATCCATTAC+TGG | - | chr4.1:33831233-33831252 | MS.gene056404:intron | 30.0% | |
| AGACAAAATCTCTAATGTAG+AGG | - | chr4.1:33831706-33831725 | MS.gene056404:intron | 30.0% | |
| ATACTAACAAACCCTAATAC+TGG | + | chr4.1:33831184-33831203 | None:intergenic | 30.0% | |
| ATTCAATTGTCAACTGTGTA+TGG | - | chr4.1:33831452-33831471 | MS.gene056404:intron | 30.0% | |
| CTATGCATCATATGTTATAC+CGG | - | chr4.1:33831277-33831296 | MS.gene056404:intron | 30.0% | |
| CTTGTAAGAGAATAATTCCA+TGG | + | chr4.1:33830535-33830554 | None:intergenic | 30.0% | |
| GAAATTATAGCAATGCTTGA+AGG | + | chr4.1:33831881-33831900 | None:intergenic | 30.0% | |
| GAACACTAGACTAAGAATAT+TGG | + | chr4.1:33831085-33831104 | None:intergenic | 30.0% | |
| GAAGCTAGATAGATTTCTTA+AGG | + | chr4.1:33828794-33828813 | None:intergenic | 30.0% | |
| GAATCAATTTGAATAAGCAG+CGG | + | chr4.1:33828527-33828546 | None:intergenic | 30.0% | |
| GAATGCAATTCTAGCATTTA+TGG | - | chr4.1:33833152-33833171 | MS.gene056404:intron | 30.0% | |
| GAGACTTCTATTCTTAATAC+AGG | - | chr4.1:33829495-33829514 | MS.gene056404:intron | 30.0% | |
| GCAATCTAACAAACATACAA+TGG | + | chr4.1:33830945-33830964 | None:intergenic | 30.0% | |
| GTATGAAATCCATATATAGG+TGG | + | chr4.1:33831922-33831941 | None:intergenic | 30.0% | |
| TAAGAATAGAAGTCTCTTCT+AGG | + | chr4.1:33829491-33829510 | None:intergenic | 30.0% | |
| TACTAACAAACCCTAATACT+GGG | + | chr4.1:33831183-33831202 | None:intergenic | 30.0% | |
| TACTAAGATGTTAAGCCTTA+TGG | - | chr4.1:33830195-33830214 | MS.gene056404:CDS | 30.0% | |
| TACTGTACTTAATCTAGTAC+TGG | - | chr4.1:33831342-33831361 | MS.gene056404:intron | 30.0% | |
| TATATCAGAACACTTAGAAG+GGG | - | chr4.1:33831649-33831668 | MS.gene056404:intron | 30.0% | |
| TATCCTCAACATTCTACAAA+AGG | - | chr4.1:33829344-33829363 | MS.gene056404:intron | 30.0% | |
| TGCTGCCAAAAAATATCAAT+AGG | + | chr4.1:33830097-33830116 | None:intergenic | 30.0% | |
| TTAAATTGAAGGAATTGGTC+AGG | - | chr4.1:33831816-33831835 | MS.gene056404:intron | 30.0% | |
| TTCAACTACGACTTAATCTT+TGG | - | chr4.1:33828648-33828667 | MS.gene056404:intron | 30.0% | |
| TTCTGATAACTTGAACTCAA+AGG | - | chr4.1:33829321-33829340 | MS.gene056404:intron | 30.0% | |
| TTTAAATCAAGGTTGCTCAA+AGG | - | chr4.1:33829253-33829272 | MS.gene056404:intron | 30.0% | |
| TTTACCTTTCCAGTACATAT+TGG | - | chr4.1:33832985-33833004 | MS.gene056404:intron | 30.0% | |
| ! | AAAGTGTCTGAATGGTAAAA+TGG | - | chr4.1:33832687-33832706 | MS.gene056404:intron | 30.0% |
| ! | CATGTATTCCTTTCTAGAAA+TGG | - | chr4.1:33831516-33831535 | MS.gene056404:intron | 30.0% |
| ! | CTGTCATGGATAATTTTCTT+AGG | - | chr4.1:33831106-33831125 | MS.gene056404:CDS | 30.0% |
| ! | GTTTTACGTTCAATTCACTT+TGG | + | chr4.1:33828984-33829003 | None:intergenic | 30.0% |
| ! | TCAATGATAAAGTGTCTGAA+TGG | - | chr4.1:33832679-33832698 | MS.gene056404:intron | 30.0% |
| ! | TGTCTATAAGAAGGTATGAT+GGG | + | chr4.1:33830674-33830693 | None:intergenic | 30.0% |
| ! | TTGTCTATAAGAAGGTATGA+TGG | + | chr4.1:33830675-33830694 | None:intergenic | 30.0% |
| ! | TTTGAGTTCAAGTTATCAGA+AGG | + | chr4.1:33829322-33829341 | None:intergenic | 30.0% |
| !! | CATTCAGTTTCTAGTTTCTA+TGG | + | chr4.1:33833320-33833339 | None:intergenic | 30.0% |
| !! | TGTTTTATTGCGAACAAAAC+TGG | + | chr4.1:33833033-33833052 | None:intergenic | 30.0% |
| !!! | ATTGATATTTTTTGGCAGCA+AGG | - | chr4.1:33830097-33830116 | MS.gene056404:CDS | 30.0% |
| !!! | GAGGCTTGTTTTTAAATTGA+AGG | - | chr4.1:33831805-33831824 | MS.gene056404:intron | 30.0% |
| !!! | TTATACCGGTTTTAGAAGAT+GGG | - | chr4.1:33831291-33831310 | MS.gene056404:intron | 30.0% |
| AAATCCATATATAGGTGGTG+AGG | + | chr4.1:33831917-33831936 | None:intergenic | 35.0% | |
| AAGTTAGGATTTGTAGTCTG+TGG | + | chr4.1:33829019-33829038 | None:intergenic | 35.0% | |
| ACAAATTGCGTGAATTAGCT+TGG | - | chr4.1:33830282-33830301 | MS.gene056404:intron | 35.0% | |
| ACCACCTAATTCAGATAGAA+AGG | - | chr4.1:33830744-33830763 | MS.gene056404:intron | 35.0% | |
| ACCTAATTCAGATAGAAAGG+AGG | - | chr4.1:33830747-33830766 | MS.gene056404:intron | 35.0% | |
| ACTAACAAACCCTAATACTG+GGG | + | chr4.1:33831182-33831201 | None:intergenic | 35.0% | |
| ACTGATCCCAACTTAAAGTT+AGG | + | chr4.1:33829034-33829053 | None:intergenic | 35.0% | |
| ATATCAGAACACTTAGAAGG+GGG | - | chr4.1:33831650-33831669 | MS.gene056404:intron | 35.0% | |
| ATATGGATGTCAAACTGTCA+AGG | + | chr4.1:33830257-33830276 | None:intergenic | 35.0% | |
| ATGCTGACCACATAAATGTT+TGG | - | chr4.1:33830563-33830582 | MS.gene056404:intron | 35.0% | |
| ATGGTCATTTAGGAGTAACA+AGG | + | chr4.1:33829757-33829776 | None:intergenic | 35.0% | |
| CAACCATACAAAATACAGCA+GGG | + | chr4.1:33833253-33833272 | None:intergenic | 35.0% | |
| CACGCAATTTGTCTACAATA+TGG | + | chr4.1:33830274-33830293 | None:intergenic | 35.0% | |
| CATTATCAGCCAATATGTAC+TGG | + | chr4.1:33832997-33833016 | None:intergenic | 35.0% | |
| CCTAATTCAGATAGAAAGGA+GGG | - | chr4.1:33830748-33830767 | MS.gene056404:intron | 35.0% | |
| CTTGTTGCCAAACATTTATG+TGG | + | chr4.1:33830573-33830592 | None:intergenic | 35.0% | |
| GGAAAAAAGAAATTCTCGAC+AGG | + | chr4.1:33833232-33833251 | None:intergenic | 35.0% | |
| GGCAAAAATAGGTTTCCATA+AGG | + | chr4.1:33830213-33830232 | None:intergenic | 35.0% | |
| GTTTGGCAACAAGATTATGA+GGG | - | chr4.1:33830580-33830599 | MS.gene056404:intron | 35.0% | |
| TAAAAATCTCAACCTCCCTT+GGG | - | chr4.1:33829569-33829588 | MS.gene056404:CDS | 35.0% | |
| TAATGAGCAATAACACTGTC+TGG | + | chr4.1:33831382-33831401 | None:intergenic | 35.0% | |
| TACAGTTCTTGGACAATCAA+CGG | + | chr4.1:33830967-33830986 | None:intergenic | 35.0% | |
| TACTGGTATGACAATGATTC+AGG | - | chr4.1:33831250-33831269 | MS.gene056404:intron | 35.0% | |
| TATCAAGTACCAGTATCTAG+CGG | + | chr4.1:33831221-33831240 | None:intergenic | 35.0% | |
| TCACAACATATAGAGGATCA+GGG | - | chr4.1:33832276-33832295 | MS.gene056404:CDS | 35.0% | |
| TCCTCTATATGTTGTGAAAC+AGG | + | chr4.1:33832273-33832292 | None:intergenic | 35.0% | |
| TCCTTTCTATCTGAATTAGG+TGG | + | chr4.1:33830748-33830767 | None:intergenic | 35.0% | |
| TCTATTCTTAATACAGGAGG+AGG | - | chr4.1:33829501-33829520 | MS.gene056404:intron | 35.0% | |
| TCTGCTCATCAATACTTTAC+CGG | + | chr4.1:33829290-33829309 | None:intergenic | 35.0% | |
| TGGAACGTATTCTTTATGCA+TGG | - | chr4.1:33831030-33831049 | MS.gene056404:CDS | 35.0% | |
| TGTTTGGCAACAAGATTATG+AGG | - | chr4.1:33830579-33830598 | MS.gene056404:intron | 35.0% | |
| TTAAAAATCTCAACCTCCCT+TGG | - | chr4.1:33829568-33829587 | MS.gene056404:CDS | 35.0% | |
| TTAAACTCAGTGAGTGTGTT+TGG | - | chr4.1:33828870-33828889 | MS.gene056404:intron | 35.0% | |
| TTACACTGGTAGGCAAAAAT+AGG | + | chr4.1:33830224-33830243 | None:intergenic | 35.0% | |
| TTCACAACATATAGAGGATC+AGG | - | chr4.1:33832275-33832294 | MS.gene056404:CDS | 35.0% | |
| ! | AAGTTCAATAAGGTGCTTTC+TGG | - | chr4.1:33829661-33829680 | MS.gene056404:intron | 35.0% |
| ! | ACTCCTTTTGTAGAATGTTG+AGG | + | chr4.1:33829350-33829369 | None:intergenic | 35.0% |
| ! | ATGGTACTGAATGATACTCT+TGG | - | chr4.1:33831471-33831490 | MS.gene056404:intron | 35.0% |
| ! | TAGAAGGGGGTATAGATAAT+TGG | - | chr4.1:33831663-33831682 | MS.gene056404:intron | 35.0% |
| ! | TAGGTTAATTTGAGTCAGCT+TGG | - | chr4.1:33832384-33832403 | MS.gene056404:intron | 35.0% |
| ! | TCTGGAACAGTGGTTATATT+AGG | - | chr4.1:33829679-33829698 | MS.gene056404:intron | 35.0% |
| ! | TTACGTTCATGATTTTCTCG+TGG | + | chr4.1:33828365-33828384 | None:intergenic | 35.0% |
| ! | TTTCCCTGCTGTATTTTGTA+TGG | - | chr4.1:33833247-33833266 | MS.gene056404:intron | 35.0% |
| !! | ATATTAGAGCTCTGAATACC+TGG | + | chr4.1:33830873-33830892 | None:intergenic | 35.0% |
| !! | GTAAAGTATTGATGAGCAGA+AGG | - | chr4.1:33829290-33829309 | MS.gene056404:intron | 35.0% |
| !!! | GTTATACCGGTTTTAGAAGA+TGG | - | chr4.1:33831290-33831309 | MS.gene056404:intron | 35.0% |
| AAAAATCTCAACCTCCCTTG+GGG | - | chr4.1:33829570-33829589 | MS.gene056404:CDS | 40.0% | |
| AAAACAAGCCTCTGAATTCC+AGG | + | chr4.1:33831797-33831816 | None:intergenic | 40.0% | |
| AAAGATGACTCTTAGCTGCT+TGG | - | chr4.1:33831131-33831150 | MS.gene056404:intron | 40.0% | |
| AAGTCTTCAGAATCACTTCG+AGG | - | chr4.1:33829111-33829130 | MS.gene056404:intron | 40.0% | |
| AATGCCTCACCACCTATATA+TGG | - | chr4.1:33831910-33831929 | MS.gene056404:intron | 40.0% | |
| AATTGAAGGAATTGGTCAGG+AGG | - | chr4.1:33831819-33831838 | MS.gene056404:intron | 40.0% | |
| ACAGCAAGTTCAGAAGTCAT+TGG | - | chr4.1:33831010-33831029 | MS.gene056404:CDS | 40.0% | |
| AGAATATTGGGGCCAAGAAA+TGG | + | chr4.1:33831072-33831091 | None:intergenic | 40.0% | |
| AGACTCTACGAAACGTTCAA+GGG | - | chr4.1:33828423-33828442 | MS.gene056404:CDS | 40.0% | |
| AGGCTAAGGCAACAATAATG+CGG | + | chr4.1:33830077-33830096 | None:intergenic | 40.0% | |
| AGTTTCTCACACAATGATGC+TGG | - | chr4.1:33829367-33829386 | MS.gene056404:intron | 40.0% | |
| ATATGTACCAGTTCACGGAA+AGG | + | chr4.1:33831430-33831449 | None:intergenic | 40.0% | |
| ATATGTTGTGAAACAGGCTC+TGG | + | chr4.1:33832267-33832286 | None:intergenic | 40.0% | |
| ATCAAGTACCAGTATCTAGC+GGG | + | chr4.1:33831220-33831239 | None:intergenic | 40.0% | |
| ATTATATGCGCCCTAAAGTG+TGG | - | chr4.1:33830318-33830337 | MS.gene056404:intron | 40.0% | |
| ATTTGCCAGTTTCCTTCTCA+CGG | - | chr4.1:33832852-33832871 | MS.gene056404:intron | 40.0% | |
| CATTACACATTTGCTCAACC+TGG | - | chr4.1:33831776-33831795 | MS.gene056404:intron | 40.0% | |
| CATTTATGTGGTCAGCATCA+AGG | + | chr4.1:33830561-33830580 | None:intergenic | 40.0% | |
| CCCTCCTTTCTATCTGAATT+AGG | + | chr4.1:33830751-33830770 | None:intergenic | 40.0% | |
| CGCAGTTCAAAAGTTTCAAC+AGG | + | chr4.1:33832244-33832263 | None:intergenic | 40.0% | |
| CTCTTGGTGAATCTTAGAAG+AGG | - | chr4.1:33831487-33831506 | MS.gene056404:intron | 40.0% | |
| CTGCTCATCAATACTTTACC+GGG | + | chr4.1:33829289-33829308 | None:intergenic | 40.0% | |
| GAACTGGACGTAGACAATTA+AGG | + | chr4.1:33833191-33833210 | None:intergenic | 40.0% | |
| GAATATTGGGGCCAAGAAAT+GGG | + | chr4.1:33831071-33831090 | None:intergenic | 40.0% | |
| GCAACCATACAAAATACAGC+AGG | + | chr4.1:33833254-33833273 | None:intergenic | 40.0% | |
| GCCTGTTTCACAACATATAG+AGG | - | chr4.1:33832269-33832288 | MS.gene056404:CDS | 40.0% | |
| TAGTCTAGTGTTCTCTGTCA+TGG | - | chr4.1:33831092-33831111 | MS.gene056404:CDS | 40.0% | |
| TATATCTCCTTTCCGTGAAC+TGG | - | chr4.1:33831420-33831439 | MS.gene056404:intron | 40.0% | |
| TCAAAAGACAGTTGAACCAC+CGG | + | chr4.1:33832326-33832345 | None:intergenic | 40.0% | |
| TCAGCCAATATGTACTGGAA+AGG | + | chr4.1:33832992-33833011 | None:intergenic | 40.0% | |
| TGCGAACAAAACTGGAAATC+AGG | + | chr4.1:33833025-33833044 | None:intergenic | 40.0% | |
| TGTTCAGGAATGGTACTTGT+TGG | - | chr4.1:33832944-33832963 | MS.gene056404:intron | 40.0% | |
| ! | CAGGTTGAGCAAATGTGTAA+TGG | + | chr4.1:33831778-33831797 | None:intergenic | 40.0% |
| ! | TTCGGATAAGTTTTCCCCAA+GGG | + | chr4.1:33829587-33829606 | None:intergenic | 40.0% |
| ! | TTCTTCAATTTGCTTTCCGG+TGG | - | chr4.1:33832307-33832326 | MS.gene056404:CDS | 40.0% |
| ! | TTGTGATTGTTATGATGGGG+CGG | + | chr4.1:33829966-33829985 | None:intergenic | 40.0% |
| !! | AAAGTTTCCAGAAGCACTTG+TGG | - | chr4.1:33832409-33832428 | MS.gene056404:intron | 40.0% |
| !! | ACTTTAGGGCGCATATAATC+TGG | + | chr4.1:33830317-33830336 | None:intergenic | 40.0% |
| !! | GAAGTCCCATCTTCTAAAAC+CGG | + | chr4.1:33831299-33831318 | None:intergenic | 40.0% |
| !!! | AGATGGTACGCTTTTTTCTC+AGG | - | chr4.1:33831844-33831863 | MS.gene056404:intron | 40.0% |
| AACACCTTCCAACTCAGAAC+TGG | - | chr4.1:33833412-33833431 | MS.gene056404:intron | 45.0% | |
| AAGAGGAGTCTCCACACTTT+AGG | + | chr4.1:33830332-33830351 | None:intergenic | 45.0% | |
| AATTGTCTACGTCCAGTTCG+AGG | - | chr4.1:33833192-33833211 | MS.gene056404:intron | 45.0% | |
| ACTCAAGAGCTTGGAATTCC+AGG | - | chr4.1:33833371-33833390 | MS.gene056404:intron | 45.0% | |
| ACTCCTCTTGGTAAGCTCTA+TGG | - | chr4.1:33830343-33830362 | MS.gene056404:intron | 45.0% | |
| AGAGGAGTCTCCACACTTTA+GGG | + | chr4.1:33830331-33830350 | None:intergenic | 45.0% | |
| AGATAGAAAGGAGGGAGTTC+TGG | - | chr4.1:33830756-33830775 | MS.gene056404:intron | 45.0% | |
| AGCACAACTTCCCCAGTATT+AGG | - | chr4.1:33831169-33831188 | MS.gene056404:intron | 45.0% | |
| AGCTAGTGCGAGCAAAATAG+AGG | + | chr4.1:33830374-33830393 | None:intergenic | 45.0% | |
| AGGCGTGTGATGAGATCAAA+TGG | + | chr4.1:33832778-33832797 | None:intergenic | 45.0% | |
| AGTGCGAGCAAAATAGAGGA+AGG | + | chr4.1:33830370-33830389 | None:intergenic | 45.0% | |
| ATACACAAGGAAGTCTGGCA+AGG | + | chr4.1:33832830-33832849 | None:intergenic | 45.0% | |
| ATGTAGAGGCTGATTGCTAC+TGG | - | chr4.1:33831720-33831739 | MS.gene056404:intron | 45.0% | |
| ATTGTGTACCCGCTAGATAC+TGG | - | chr4.1:33831209-33831228 | MS.gene056404:intron | 45.0% | |
| CAGACTCTACGAAACGTTCA+AGG | - | chr4.1:33828422-33828441 | MS.gene056404:CDS | 45.0% | |
| CAGCTAGATATGTGTCCCAA+AGG | + | chr4.1:33832798-33832817 | None:intergenic | 45.0% | |
| CATTCCTGAACAGCAAGACT+AGG | + | chr4.1:33832936-33832955 | None:intergenic | 45.0% | |
| CCTGCAAGTGGATATGTTCA+GGG | - | chr4.1:33831590-33831609 | MS.gene056404:intron | 45.0% | |
| CTGCAAGTGGATATGTTCAG+GGG | - | chr4.1:33831591-33831610 | MS.gene056404:intron | 45.0% | |
| CTTGAACGTTTCGTAGAGTC+TGG | + | chr4.1:33828424-33828443 | None:intergenic | 45.0% | |
| GAAGGAACATTACCAACTCC+TGG | + | chr4.1:33833392-33833411 | None:intergenic | 45.0% | |
| GAATTGGTCAGGAGGATAGA+TGG | - | chr4.1:33831827-33831846 | MS.gene056404:intron | 45.0% | |
| GACGATCAGCCCAAATACAT+AGG | + | chr4.1:33829730-33829749 | None:intergenic | 45.0% | |
| GAGAACTAGACACACACACT+CGG | - | chr4.1:33829201-33829220 | MS.gene056404:intron | 45.0% | |
| GATAGAAAGGAGGGAGTTCT+GGG | - | chr4.1:33830757-33830776 | MS.gene056404:intron | 45.0% | |
| GCACAACTTCCCCAGTATTA+GGG | - | chr4.1:33831170-33831189 | MS.gene056404:intron | 45.0% | |
| GGCACAAGTGATCAGATATC+TGG | - | chr4.1:33829388-33829407 | MS.gene056404:intron | 45.0% | |
| GGCTAAGGCAACAATAATGC+GGG | + | chr4.1:33830076-33830095 | None:intergenic | 45.0% | |
| GTAACGTCAGGTACAGTTCT+TGG | + | chr4.1:33830978-33830997 | None:intergenic | 45.0% | |
| GTCAGACAAACTCAAGAGCT+TGG | - | chr4.1:33833362-33833381 | MS.gene056404:intron | 45.0% | |
| TAAAGTGTGGAGACTCCTCT+TGG | - | chr4.1:33830331-33830350 | MS.gene056404:intron | 45.0% | |
| TAGCGCCAATGGTATACTTG+CGG | + | chr4.1:33829615-33829634 | None:intergenic | 45.0% | |
| TCAGATATCTGGTGCAGTAG+AGG | - | chr4.1:33829399-33829418 | MS.gene056404:intron | 45.0% | |
| TCCTGCAAGTGGATATGTTC+AGG | - | chr4.1:33831589-33831608 | MS.gene056404:intron | 45.0% | |
| TGATCTCATCACACGCCTTT+GGG | - | chr4.1:33832780-33832799 | MS.gene056404:intron | 45.0% | |
| TGCTGGAAGAATGTAACGTC+AGG | + | chr4.1:33830990-33831009 | None:intergenic | 45.0% | |
| TGGGACACATATCTAGCTGA+AGG | - | chr4.1:33832799-33832818 | MS.gene056404:intron | 45.0% | |
| TGTTTGTCGAAGTTGCTCGA+CGG | - | chr4.1:33831743-33831762 | MS.gene056404:intron | 45.0% | |
| TTCAGAACGTTCAGACGATG+AGG | - | chr4.1:33830834-33830853 | MS.gene056404:CDS | 45.0% | |
| TTGATCTCATCACACGCCTT+TGG | - | chr4.1:33832779-33832798 | MS.gene056404:intron | 45.0% | |
| TTGCTCAACCTGGAATTCAG+AGG | - | chr4.1:33831786-33831805 | MS.gene056404:intron | 45.0% | |
| ! | AGTATCTAGCGGGTACACAA+TGG | + | chr4.1:33831210-33831229 | None:intergenic | 45.0% |
| ! | CGTTCATGATTTTCTCGTGG+AGG | + | chr4.1:33828362-33828381 | None:intergenic | 45.0% |
| ! | CTTCGGATAAGTTTTCCCCA+AGG | + | chr4.1:33829588-33829607 | None:intergenic | 45.0% |
| ! | TCGTCTGAACGTTCTGAATC+TGG | + | chr4.1:33830832-33830851 | None:intergenic | 45.0% |
| ! | TCGTTTTCCACAAGTGCTTC+TGG | + | chr4.1:33832419-33832438 | None:intergenic | 45.0% |
| ! | TTGCGTGAATTAGCTTGGAG+TGG | - | chr4.1:33830287-33830306 | MS.gene056404:intron | 45.0% |
| !! | ACTTCTGAACTTGCTGTTGC+TGG | + | chr4.1:33831007-33831026 | None:intergenic | 45.0% |
| !! | ATCTCCTAGTCTTGCTGTTC+AGG | - | chr4.1:33832929-33832948 | MS.gene056404:intron | 45.0% |
| !! | CTAGTCTTGCTGTTCAGGAA+TGG | - | chr4.1:33832934-33832953 | MS.gene056404:intron | 45.0% |
| !! | TAAGGTGCTTTCTGGAACAG+TGG | - | chr4.1:33829669-33829688 | MS.gene056404:intron | 45.0% |
| !! | TCTGAGTTGGAAGGTGTTGA+AGG | + | chr4.1:33833410-33833429 | None:intergenic | 45.0% |
| AACTCAGAACTGGACTCACC+AGG | - | chr4.1:33833422-33833441 | MS.gene056404:intron | 50.0% | |
| AATTGTCAGGGCAAACCTCG+CGG | + | chr4.1:33832350-33832369 | None:intergenic | 50.0% | |
| AGCGCCAATGGTATACTTGC+GGG | + | chr4.1:33829614-33829633 | None:intergenic | 50.0% | |
| CCCTGAACATATCCACTTGC+AGG | + | chr4.1:33831593-33831612 | None:intergenic | 50.0% | |
| GACACCCGCAAGTATACCAT+TGG | - | chr4.1:33829607-33829626 | MS.gene056404:intron | 50.0% | |
| GAGCTTGGAATTCCAGGAGT+TGG | - | chr4.1:33833377-33833396 | MS.gene056404:intron | 50.0% | |
| GCAATTCGACATCCTGCAAG+TGG | - | chr4.1:33831578-33831597 | MS.gene056404:intron | 50.0% | |
| GGAATCAAGAGCAGCAACAG+TGG | + | chr4.1:33828393-33828412 | None:intergenic | 50.0% | |
| GGTATACTTGCGGGTGTCTT+CGG | + | chr4.1:33829605-33829624 | None:intergenic | 50.0% | |
| GGTCCATAGAGCTTACCAAG+AGG | + | chr4.1:33830349-33830368 | None:intergenic | 50.0% | |
| TACCATTGGCGCTAGAGCTA+CGG | - | chr4.1:33829621-33829640 | MS.gene056404:intron | 50.0% | |
| TATGTGCATGCACCTCGAAC+TGG | + | chr4.1:33833207-33833226 | None:intergenic | 50.0% | |
| TCGTAGAGTCTGGCTGAATC+TGG | + | chr4.1:33828414-33828433 | None:intergenic | 50.0% | |
| TGCTGTGCCACATAAATGCC+CGG | + | chr4.1:33833467-33833486 | None:intergenic | 50.0% | |
| TGCTTTCCCGGGCATTTATG+TGG | - | chr4.1:33833457-33833476 | MS.gene056404:CDS | 50.0% | |
| TGTTCATTGAGGCTGAGCCA+TGG | - | chr4.1:33830515-33830534 | MS.gene056404:intron | 50.0% | |
| ! | CAACTGTCTTTTGATCCGCG+AGG | - | chr4.1:33832332-33832351 | MS.gene056404:CDS | 50.0% |
| ! | GGATAAGTTTTCCCCAAGGG+AGG | + | chr4.1:33829584-33829603 | None:intergenic | 50.0% |
| ! | GTTATGATGGGGCGGTGATA+TGG | + | chr4.1:33829958-33829977 | None:intergenic | 50.0% |
| !! | GAGTCCAGTTCTGAGTTGGA+AGG | + | chr4.1:33833419-33833438 | None:intergenic | 50.0% |
| !! | TGAGTGTGTTTGGCTCTGTG+CGG | - | chr4.1:33828880-33828899 | MS.gene056404:intron | 50.0% |
| !! | TGGTGAGTCCAGTTCTGAGT+TGG | + | chr4.1:33833423-33833442 | None:intergenic | 50.0% |
| ACCTCGAGATGGTGCTTTCC+CGG | - | chr4.1:33833445-33833464 | MS.gene056404:CDS | 55.0% | |
| CTAGCTAGCTCACCGTGAGA+AGG | + | chr4.1:33832867-33832886 | None:intergenic | 55.0% | |
| CTCAAAGGTCGTAGCATGCC+CGG | - | chr4.1:33829268-33829287 | MS.gene056404:intron | 55.0% | |
| GCTCACCGTGAGAAGGAAAC+TGG | + | chr4.1:33832860-33832879 | None:intergenic | 55.0% | |
| GCTGTGCCACATAAATGCCC+GGG | + | chr4.1:33833466-33833485 | None:intergenic | 55.0% | |
| GGCGGTGATATGGAAGACTG+CGG | + | chr4.1:33829948-33829967 | None:intergenic | 55.0% | |
| TGAGGTCAACATGCTTCGCC+AGG | - | chr4.1:33830852-33830871 | MS.gene056404:CDS | 55.0% | |
| TGGCGCTAGAGCTACGGATT+CGG | - | chr4.1:33829627-33829646 | MS.gene056404:intron | 55.0% | |
| ! | AAAGCACCATCTCGAGGTCC+TGG | + | chr4.1:33833443-33833462 | None:intergenic | 55.0% |
| ! | CACGGTGAGCTAGCTAGCTT+TGG | - | chr4.1:33832870-33832889 | MS.gene056404:intron | 55.0% |
| !! | ATCCGTAGCTCTAGCGCCAA+TGG | + | chr4.1:33829626-33829645 | None:intergenic | 55.0% |
| !! | GAAAGGAGGGAGTTCTGGGA+AGG | - | chr4.1:33830761-33830780 | MS.gene056404:intron | 55.0% |
| CCTCGAGATGGTGCTTTCCC+GGG | - | chr4.1:33833446-33833465 | MS.gene056404:CDS | 60.0% | |
| GACTCACCAGGACCTCGAGA+TGG | - | chr4.1:33833434-33833453 | MS.gene056404:CDS | 60.0% | |
| !! | GGAGTTCTGGGAAGGAAGCG+CGG | - | chr4.1:33830769-33830788 | MS.gene056404:intron | 60.0% |
| !! | CCCGGGAAAGCACCATCTCG+AGG | + | chr4.1:33833449-33833468 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 33828350 | 33833521 | 33828350 | ID=MS.gene056404 |
| chr4.1 | mRNA | 33828350 | 33833521 | 33828350 | ID=MS.gene056404.t1;Parent=MS.gene056404 |
| chr4.1 | exon | 33833427 | 33833521 | 33833427 | ID=MS.gene056404.t1.exon1;Parent=MS.gene056404.t1 |
| chr4.1 | CDS | 33833427 | 33833521 | 33833427 | ID=cds.MS.gene056404.t1;Parent=MS.gene056404.t1 |
| chr4.1 | exon | 33832451 | 33832607 | 33832451 | ID=MS.gene056404.t1.exon2;Parent=MS.gene056404.t1 |
| chr4.1 | CDS | 33832451 | 33832607 | 33832451 | ID=cds.MS.gene056404.t1;Parent=MS.gene056404.t1 |
| chr4.1 | exon | 33832171 | 33832354 | 33832171 | ID=MS.gene056404.t1.exon3;Parent=MS.gene056404.t1 |
| chr4.1 | CDS | 33832171 | 33832354 | 33832171 | ID=cds.MS.gene056404.t1;Parent=MS.gene056404.t1 |
| chr4.1 | exon | 33831519 | 33831589 | 33831519 | ID=MS.gene056404.t1.exon4;Parent=MS.gene056404.t1 |
| chr4.1 | CDS | 33831519 | 33831589 | 33831519 | ID=cds.MS.gene056404.t1;Parent=MS.gene056404.t1 |
| chr4.1 | exon | 33830998 | 33831135 | 33830998 | ID=MS.gene056404.t1.exon5;Parent=MS.gene056404.t1 |
| chr4.1 | CDS | 33830998 | 33831135 | 33830998 | ID=cds.MS.gene056404.t1;Parent=MS.gene056404.t1 |
| chr4.1 | exon | 33830820 | 33830911 | 33830820 | ID=MS.gene056404.t1.exon6;Parent=MS.gene056404.t1 |
| chr4.1 | CDS | 33830820 | 33830911 | 33830820 | ID=cds.MS.gene056404.t1;Parent=MS.gene056404.t1 |
| chr4.1 | exon | 33830023 | 33830294 | 33830023 | ID=MS.gene056404.t1.exon7;Parent=MS.gene056404.t1 |
| chr4.1 | CDS | 33830023 | 33830294 | 33830023 | ID=cds.MS.gene056404.t1;Parent=MS.gene056404.t1 |
| chr4.1 | exon | 33829518 | 33829603 | 33829518 | ID=MS.gene056404.t1.exon8;Parent=MS.gene056404.t1 |
| chr4.1 | CDS | 33829518 | 33829603 | 33829518 | ID=cds.MS.gene056404.t1;Parent=MS.gene056404.t1 |
| chr4.1 | exon | 33828998 | 33829099 | 33828998 | ID=MS.gene056404.t1.exon9;Parent=MS.gene056404.t1 |
| chr4.1 | CDS | 33828998 | 33829099 | 33828998 | ID=cds.MS.gene056404.t1;Parent=MS.gene056404.t1 |
| chr4.1 | exon | 33828350 | 33828511 | 33828350 | ID=MS.gene056404.t1.exon10;Parent=MS.gene056404.t1 |
| chr4.1 | CDS | 33828350 | 33828511 | 33828350 | ID=cds.MS.gene056404.t1;Parent=MS.gene056404.t1 |
| Gene Sequence |
| Protein sequence |
