Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28318.t1 | XP_003606828.2 | 94.7 | 455 | 21 | 1 | 1 | 452 | 1 | 455 | 1.90E-244 | 854.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28318.t1 | Q9NU19 | 49.5 | 325 | 160 | 2 | 127 | 450 | 182 | 503 | 3.9e-89 | 330.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28318.t1 | G7JEW7 | 94.7 | 455 | 21 | 1 | 1 | 452 | 1 | 455 | 1.4e-244 | 854.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056404 | MS.gene28318 | 0.804877 | 1.75E-49 | -1.69E-46 |
| MS.gene056606 | MS.gene28318 | 0.817961 | 2.51E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28318 | MS.gene049260 | PPI |
| MS.gene28318 | MS.gene013282 | PPI |
| MS.gene28318 | MS.gene06367 | PPI |
| MS.gene28318 | MS.gene40923 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28318.t1 | MTR_4g068180 | 97.143 | 455 | 10 | 1 | 1 | 452 | 1 | 455 | 0.0 | 917 |
| MS.gene28318.t1 | MTR_2g099380 | 79.864 | 442 | 87 | 1 | 11 | 452 | 9 | 448 | 0.0 | 743 |
| MS.gene28318.t1 | MTR_2g099380 | 77.301 | 326 | 72 | 1 | 11 | 336 | 9 | 332 | 0.0 | 522 |
| MS.gene28318.t1 | MTR_3g083840 | 26.957 | 345 | 183 | 9 | 138 | 426 | 88 | 419 | 1.20e-26 | 111 |
| MS.gene28318.t1 | MTR_4g114580 | 28.024 | 339 | 175 | 8 | 138 | 420 | 116 | 441 | 2.42e-25 | 108 |
| MS.gene28318.t1 | MTR_8g085300 | 26.216 | 370 | 204 | 8 | 113 | 426 | 74 | 430 | 8.07e-25 | 106 |
| MS.gene28318.t1 | MTR_1g069705 | 27.397 | 292 | 147 | 12 | 120 | 376 | 46 | 307 | 1.23e-17 | 85.1 |
| MS.gene28318.t1 | MTR_6g016590 | 26.642 | 274 | 146 | 8 | 155 | 420 | 87 | 313 | 4.09e-17 | 83.2 |
| MS.gene28318.t1 | MTR_4g115090 | 24.351 | 308 | 192 | 10 | 140 | 436 | 350 | 627 | 2.15e-15 | 79.0 |
| MS.gene28318.t1 | MTR_5g098140 | 25.523 | 239 | 134 | 6 | 148 | 382 | 106 | 304 | 1.39e-14 | 75.5 |
| MS.gene28318.t1 | MTR_2g099185 | 27.219 | 169 | 99 | 2 | 213 | 380 | 372 | 517 | 2.69e-14 | 75.5 |
| MS.gene28318.t1 | MTR_2g099185 | 27.219 | 169 | 99 | 2 | 213 | 380 | 367 | 512 | 3.24e-14 | 75.1 |
| MS.gene28318.t1 | MTR_2g099185 | 27.219 | 169 | 99 | 2 | 213 | 380 | 367 | 512 | 5.12e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28318.t1 | AT2G30710 | 74.134 | 433 | 107 | 3 | 20 | 452 | 13 | 440 | 0.0 | 679 |
| MS.gene28318.t1 | AT1G04830 | 27.160 | 405 | 224 | 10 | 80 | 426 | 43 | 434 | 1.08e-30 | 123 |
| MS.gene28318.t1 | AT1G04830 | 27.160 | 405 | 224 | 10 | 80 | 426 | 43 | 434 | 1.39e-30 | 123 |
| MS.gene28318.t1 | AT4G13730 | 25.507 | 345 | 199 | 6 | 127 | 426 | 96 | 427 | 7.92e-25 | 106 |
| MS.gene28318.t1 | AT4G13730 | 25.000 | 356 | 198 | 7 | 127 | 426 | 96 | 438 | 7.70e-23 | 100 |
| MS.gene28318.t1 | AT1G04830 | 25.676 | 370 | 231 | 9 | 80 | 426 | 43 | 391 | 2.17e-20 | 93.2 |
| MS.gene28318.t1 | AT4G13730 | 25.159 | 314 | 166 | 7 | 127 | 384 | 96 | 396 | 1.08e-18 | 88.2 |
| MS.gene28318.t1 | AT3G02460 | 26.277 | 274 | 147 | 8 | 155 | 420 | 88 | 314 | 1.44e-18 | 87.4 |
| MS.gene28318.t1 | AT3G02460 | 26.277 | 274 | 147 | 8 | 155 | 420 | 88 | 314 | 2.09e-18 | 86.7 |
| MS.gene28318.t1 | AT5G15930 | 25.275 | 273 | 151 | 8 | 155 | 420 | 85 | 311 | 4.81e-17 | 82.8 |
| MS.gene28318.t1 | AT3G02460 | 26.383 | 235 | 123 | 6 | 155 | 382 | 88 | 279 | 6.89e-17 | 81.6 |
| MS.gene28318.t1 | AT3G02460 | 26.068 | 234 | 123 | 6 | 155 | 381 | 88 | 278 | 2.62e-16 | 79.7 |
| MS.gene28318.t1 | AT3G02460 | 25.301 | 249 | 136 | 6 | 155 | 396 | 88 | 293 | 3.20e-16 | 80.1 |
| MS.gene28318.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 3.85e-16 | 80.5 |
| MS.gene28318.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 3.85e-16 | 80.5 |
| MS.gene28318.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 3.85e-16 | 80.5 |
| MS.gene28318.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 3.85e-16 | 80.5 |
| MS.gene28318.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 3.85e-16 | 80.5 |
| MS.gene28318.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 355 | 500 | 6.06e-14 | 74.7 |
| MS.gene28318.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 355 | 500 | 6.06e-14 | 74.7 |
| MS.gene28318.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 6.33e-14 | 74.7 |
| MS.gene28318.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 6.35e-14 | 74.7 |
| MS.gene28318.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 7.13e-14 | 74.3 |
| MS.gene28318.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 7.13e-14 | 74.3 |
| MS.gene28318.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 7.13e-14 | 74.3 |
| MS.gene28318.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 7.13e-14 | 74.3 |
| MS.gene28318.t1 | AT3G59570 | 27.219 | 169 | 99 | 2 | 213 | 380 | 363 | 508 | 4.80e-13 | 71.6 |
| MS.gene28318.t1 | AT5G52580 | 24.232 | 293 | 181 | 10 | 140 | 419 | 358 | 622 | 5.28e-13 | 71.6 |
| MS.gene28318.t1 | AT3G59570 | 27.219 | 169 | 99 | 2 | 213 | 380 | 363 | 508 | 5.90e-13 | 71.6 |
| MS.gene28318.t1 | AT3G59570 | 27.219 | 169 | 99 | 2 | 213 | 380 | 363 | 508 | 5.91e-13 | 71.6 |
| MS.gene28318.t1 | AT5G52580 | 24.232 | 293 | 181 | 10 | 140 | 419 | 375 | 639 | 6.02e-13 | 71.6 |
| MS.gene28318.t1 | AT5G52580 | 24.232 | 293 | 181 | 10 | 140 | 419 | 364 | 628 | 6.06e-13 | 71.2 |
| MS.gene28318.t1 | AT2G37290 | 24.896 | 241 | 140 | 6 | 146 | 383 | 308 | 510 | 6.52e-13 | 71.6 |
| MS.gene28318.t1 | AT2G37290 | 24.896 | 241 | 140 | 6 | 146 | 383 | 308 | 510 | 7.05e-13 | 71.2 |
| MS.gene28318.t1 | AT4G28550 | 27.326 | 172 | 98 | 5 | 212 | 380 | 166 | 313 | 9.16e-13 | 69.7 |
| MS.gene28318.t1 | AT4G28550 | 27.907 | 172 | 97 | 5 | 212 | 380 | 166 | 313 | 1.86e-12 | 69.3 |
| MS.gene28318.t1 | AT2G20440 | 27.485 | 171 | 97 | 5 | 213 | 380 | 51 | 197 | 2.78e-12 | 67.8 |
| MS.gene28318.t1 | AT4G28550 | 27.811 | 169 | 95 | 5 | 212 | 377 | 166 | 310 | 6.22e-12 | 67.0 |
| MS.gene28318.t1 | AT2G20440 | 24.364 | 275 | 142 | 10 | 148 | 380 | 63 | 313 | 1.05e-11 | 67.0 |
| MS.gene28318.t1 | AT2G20440 | 24.364 | 275 | 142 | 10 | 148 | 380 | 63 | 313 | 1.05e-11 | 67.0 |
| MS.gene28318.t1 | AT2G20440 | 26.984 | 189 | 103 | 7 | 213 | 398 | 167 | 323 | 3.47e-11 | 65.1 |
Find 107 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCTTCAATTTGCTTTC+CGG | 0.153454 | 4.4:-39023684 | MS.gene28318:CDS |
| AAGTTCAATAAGGTGCTTTC+TGG | 0.158641 | 4.4:-39026317 | MS.gene28318:CDS |
| CCCTCCTTTCTATCTGAATT+AGG | 0.240906 | 4.4:+39025235 | None:intergenic |
| TCTGGAACAGTGGTTATATT+AGG | 0.280287 | 4.4:-39026299 | MS.gene28318:intron |
| ACCTCGAGATGGTGCTTTCC+CGG | 0.286815 | 4.4:-39022543 | MS.gene28318:CDS |
| TCGTCTGAACGTTCTGAATC+TGG | 0.317488 | 4.4:+39025154 | None:intergenic |
| AAGAGGAGTCTCCACACTTT+AGG | 0.321748 | 4.4:+39025654 | None:intergenic |
| AAAACAAGCCTCTGAATTCC+AGG | 0.327397 | 4.4:+39024189 | None:intergenic |
| TTTATATCAGAACACTTAGA+AGG | 0.337221 | 4.4:-39024336 | MS.gene28318:CDS |
| ACTCAAGAGCTTGGAATTCC+AGG | 0.337608 | 4.4:-39022617 | MS.gene28318:CDS |
| AGATAGAAAGGAGGGAGTTC+TGG | 0.339166 | 4.4:-39025227 | MS.gene28318:CDS |
| TTGATCTCATCACACGCCTT+TGG | 0.368239 | 4.4:-39023209 | MS.gene28318:CDS |
| TCCTCTATATGTTGTGAAAC+AGG | 0.369650 | 4.4:+39023718 | None:intergenic |
| TCCTGCTAGTGGATATGTTC+AGG | 0.373064 | 4.4:-39024394 | MS.gene28318:CDS |
| TGATCTCATCACACGCCTTT+GGG | 0.373855 | 4.4:-39023208 | MS.gene28318:CDS |
| TCTGCTCATCAATACTTTAC+CGG | 0.374779 | 4.4:+39026691 | None:intergenic |
| ACTTCTGAACTTGCTGTTGT+TGG | 0.386909 | 4.4:+39024979 | None:intergenic |
| GGTATACTTGCGGGTGTCTT+CGG | 0.387375 | 4.4:+39026376 | None:intergenic |
| AATATATACACAAGGAAGTC+TGG | 0.401217 | 4.4:+39023156 | None:intergenic |
| AGAGGAGTCTCCACACTTTA+GGG | 0.401637 | 4.4:+39025655 | None:intergenic |
| TCGTAGAGTCTGGCTGAATC+TGG | 0.401808 | 4.4:+39027514 | None:intergenic |
| ACTTTAGGGCGCATATAATC+TGG | 0.407268 | 4.4:+39025669 | None:intergenic |
| AACACCTTCCAACTCAGAAC+TGG | 0.415204 | 4.4:-39022576 | MS.gene28318:CDS |
| GAATTGGTCAGGAGGATAGA+TGG | 0.417574 | 4.4:-39024156 | MS.gene28318:intron |
| GTAACGTCAGGTACAGTTCT+TGG | 0.418419 | 4.4:+39025008 | None:intergenic |
| TTAAATTGAAGGAATTGGTC+AGG | 0.419755 | 4.4:-39024167 | MS.gene28318:CDS |
| AAGAGTTACAAAGTTCAATA+AGG | 0.425239 | 4.4:-39026327 | MS.gene28318:CDS |
| GATAGAAAGGAGGGAGTTCT+GGG | 0.432601 | 4.4:-39025226 | MS.gene28318:CDS |
| TTCACAACATATAGAGGATC+AGG | 0.434173 | 4.4:-39023713 | MS.gene28318:CDS |
| AGCGCCAATGGTATACTTGC+GGG | 0.444539 | 4.4:+39026367 | None:intergenic |
| CTTGAACGTTTCGTAGAGTC+TGG | 0.447323 | 4.4:+39027504 | None:intergenic |
| GCTCACCGTGAGAAGGAAAC+TGG | 0.462813 | 4.4:+39023131 | None:intergenic |
| TGCTGTGCCACATAAATGCC+CGG | 0.464703 | 4.4:+39022524 | None:intergenic |
| TCTGAGTTGGAAGGTGTTGA+AGG | 0.469826 | 4.4:+39022581 | None:intergenic |
| TGGCGCTAGAGCTACGGATT+CGG | 0.472648 | 4.4:-39026351 | MS.gene28318:CDS |
| TGCTTTCCCGGGCATTTATG+TGG | 0.472854 | 4.4:-39022531 | MS.gene28318:CDS |
| TATCCTCAACATTCTACAAA+AGG | 0.477199 | 4.4:-39026634 | MS.gene28318:CDS |
| TGCCAACTCAGCTAGCGAAA+TGG | 0.482845 | 4.4:+39022482 | None:intergenic |
| ACAAATTGCGTGAATTAGCT+TGG | 0.484787 | 4.4:-39025701 | MS.gene28318:CDS |
| GCCTGTTTCACAACATATAG+AGG | 0.486010 | 4.4:-39023719 | MS.gene28318:CDS |
| GAGCTTGGAATTCCAGGAGT+TGG | 0.490575 | 4.4:-39022611 | MS.gene28318:CDS |
| CAGACTCTACGAAACGTTCA+AGG | 0.491397 | 4.4:-39027503 | MS.gene28318:CDS |
| GGCACAAGTGATCAGATATC+TGG | 0.493498 | 4.4:-39026590 | MS.gene28318:CDS |
| GTCAGACAAACTCAAGAGCT+TGG | 0.494238 | 4.4:-39022626 | MS.gene28318:CDS |
| CCTCGAGATGGTGCTTTCCC+GGG | 0.496826 | 4.4:-39022542 | MS.gene28318:CDS |
| CTGCTCATCAATACTTTACC+GGG | 0.500375 | 4.4:+39026692 | None:intergenic |
| CATTACACATTTGCTCAACC+TGG | 0.502850 | 4.4:-39024207 | MS.gene28318:CDS |
| CCTGCTAGTGGATATGTTCA+GGG | 0.504127 | 4.4:-39024393 | MS.gene28318:CDS |
| ACCACCTAATTCAGATAGAA+AGG | 0.505337 | 4.4:-39025239 | MS.gene28318:CDS |
| ATGTAGAGGCTGATTGCTAC+TGG | 0.506715 | 4.4:-39024263 | MS.gene28318:CDS |
| TACCATTGGCGCTAGAGCTA+CGG | 0.513971 | 4.4:-39026357 | MS.gene28318:CDS |
| TAAGGTGCTTTCTGGAACAG+TGG | 0.515552 | 4.4:-39026309 | MS.gene28318:CDS |
| ACAGCAAGTTCAGAAGTCAT+TGG | 0.516400 | 4.4:-39024973 | MS.gene28318:CDS |
| ATCCGTAGCTCTAGCGCCAA+TGG | 0.518827 | 4.4:+39026355 | None:intergenic |
| AAAGCACCATCTCGAGGTCC+TGG | 0.520492 | 4.4:+39022548 | None:intergenic |
| CTCAAAGGTCGTAGCATGCC+CGG | 0.521571 | 4.4:-39026710 | MS.gene28318:CDS |
| AGGCGTGTGATGAGATCAAA+TGG | 0.521736 | 4.4:+39023213 | None:intergenic |
| GAAGGAACATTACCAACTCC+TGG | 0.524180 | 4.4:+39022599 | None:intergenic |
| TGGTGAGTCCAGTTCTGAGT+TGG | 0.526407 | 4.4:+39022568 | None:intergenic |
| ACTCAGCTAGCGAAATGGCT+TGG | 0.527389 | 4.4:+39022487 | None:intergenic |
| CCCTGAACATATCCACTAGC+AGG | 0.534785 | 4.4:+39024393 | None:intergenic |
| GAAAGGAGGGAGTTCTGGGA+AGG | 0.535564 | 4.4:-39025222 | MS.gene28318:CDS |
| TTATATCAGAACACTTAGAA+GGG | 0.537210 | 4.4:-39024335 | MS.gene28318:CDS |
| ATTTGCCAGTTTCCTTCTCA+CGG | 0.538122 | 4.4:-39023136 | MS.gene28318:intron |
| TCCTTTCTATCTGAATTAGG+TGG | 0.539605 | 4.4:+39025238 | None:intergenic |
| TTTGAGTTCAAGTTATCAGA+AGG | 0.541216 | 4.4:+39026659 | None:intergenic |
| TGAGGTCAACATGCTTCGCC+AGG | 0.546292 | 4.4:-39025131 | MS.gene28318:intron |
| AACTCAGAACTGGACTCACC+AGG | 0.554419 | 4.4:-39022566 | MS.gene28318:CDS |
| TAAAGTGTGGAGACTCCTCT+TGG | 0.555773 | 4.4:-39025652 | MS.gene28318:intron |
| TTCTTCAATTTGCTTTCCGG+TGG | 0.556488 | 4.4:-39023681 | MS.gene28318:CDS |
| CAGGTTGAGCAAATGTGTAA+TGG | 0.558220 | 4.4:+39024208 | None:intergenic |
| TAGCGCCAATGGTATACTTG+CGG | 0.569347 | 4.4:+39026366 | None:intergenic |
| TCAGATATCTGGTGCAGTAG+AGG | 0.573878 | 4.4:-39026579 | MS.gene28318:intron |
| GGAGTTCTGGGAAGGAAGCG+CGG | 0.577143 | 4.4:-39025214 | MS.gene28318:CDS |
| AGTTTCTCACACAATGATGC+TGG | 0.578928 | 4.4:-39026611 | MS.gene28318:CDS |
| TTTAAATCAAGGTTGCTCAA+AGG | 0.582230 | 4.4:-39026725 | MS.gene28318:intron |
| TGTTGGAAGAATGTAACGTC+AGG | 0.582459 | 4.4:+39024996 | None:intergenic |
| TACAGTTCTTGGACAATCAA+CGG | 0.584447 | 4.4:+39025019 | None:intergenic |
| GACACCCGCAAGTATACCAT+TGG | 0.585744 | 4.4:-39026371 | MS.gene28318:CDS |
| TGGAACGTATTCTTTATGCA+TGG | 0.587229 | 4.4:-39024953 | MS.gene28318:intron |
| TTCTGATAACTTGAACTCAA+AGG | 0.587378 | 4.4:-39026657 | MS.gene28318:CDS |
| GCAATTCGACATCCTGCTAG+TGG | 0.588975 | 4.4:-39024405 | MS.gene28318:CDS |
| TTGCTCAACCTGGAATTCAG+AGG | 0.589516 | 4.4:-39024197 | MS.gene28318:CDS |
| CCTAATTCAGATAGAAAGGA+GGG | 0.596459 | 4.4:-39025235 | MS.gene28318:CDS |
| TCAAAAGACAGTTGAACCAC+CGG | 0.600802 | 4.4:+39023665 | None:intergenic |
| GTAAAGTATTGATGAGCAGA+AGG | 0.604241 | 4.4:-39026688 | MS.gene28318:CDS |
| TAAGCTAGCTCACCGTGAGA+AGG | 0.605423 | 4.4:+39023124 | None:intergenic |
| GACTCACCAGGACCTCGAGA+TGG | 0.605820 | 4.4:-39022554 | MS.gene28318:CDS |
| ATTATATGCGCCCTAAAGTG+TGG | 0.607591 | 4.4:-39025665 | MS.gene28318:CDS |
| AATTGAAGGAATTGGTCAGG+AGG | 0.609370 | 4.4:-39024164 | MS.gene28318:CDS |
| AGACAAAATCTCTAATGTAG+AGG | 0.611644 | 4.4:-39024277 | MS.gene28318:CDS |
| TGGGACACATATCTAGCTGA+AGG | 0.612669 | 4.4:-39023189 | MS.gene28318:CDS |
| ACCTAATTCAGATAGAAAGG+AGG | 0.625011 | 4.4:-39025236 | MS.gene28318:CDS |
| TATATCAGAACACTTAGAAG+GGG | 0.625153 | 4.4:-39024334 | MS.gene28318:CDS |
| CAGCTAGATATGTGTCCCAA+AGG | 0.627022 | 4.4:+39023193 | None:intergenic |
| GCTGTGCCACATAAATGCCC+GGG | 0.632407 | 4.4:+39022525 | None:intergenic |
| GAGTCCAGTTCTGAGTTGGA+AGG | 0.640965 | 4.4:+39022572 | None:intergenic |
| ATATCAGAACACTTAGAAGG+GGG | 0.643161 | 4.4:-39024333 | MS.gene28318:CDS |
| CCCGGGAAAGCACCATCTCG+AGG | 0.648223 | 4.4:+39022542 | None:intergenic |
| TCACAACATATAGAGGATCA+GGG | 0.651098 | 4.4:-39023712 | MS.gene28318:CDS |
| TGTTTGTCGAAGTTGCTCGA+CGG | 0.654377 | 4.4:-39024240 | MS.gene28318:CDS |
| TTCAGAACGTTCAGACGATG+AGG | 0.654756 | 4.4:-39025149 | MS.gene28318:CDS |
| ATACACAAGGAAGTCTGGCA+AGG | 0.657164 | 4.4:+39023161 | None:intergenic |
| CTGCTAGTGGATATGTTCAG+GGG | 0.660606 | 4.4:-39024392 | MS.gene28318:CDS |
| AGACTCTACGAAACGTTCAA+GGG | 0.665190 | 4.4:-39027502 | MS.gene28318:intron |
| AACTGGCAAATATATACACA+AGG | 0.671598 | 4.4:+39023148 | None:intergenic |
| TTGCGTGAATTAGCTTGGAG+TGG | 0.688224 | 4.4:-39025696 | MS.gene28318:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATTATTTTAGTGAAA+AGG | + | chr4.4:39026972-39026991 | None:intergenic | 10.0% |
| !!! | ATTTATTTCTTTATTTAATC+TGG | - | chr4.4:39023973-39023992 | MS.gene28318:intron | 10.0% |
| !! | AAGATATAGGAATAATAATA+TGG | + | chr4.4:39026272-39026291 | None:intergenic | 15.0% |
| !! | AGATTATATTTCAAAGATAT+AGG | + | chr4.4:39026285-39026304 | None:intergenic | 15.0% |
| !! | ATAACTAATTTCAACTTATA+TGG | + | chr4.4:39026574-39026593 | None:intergenic | 15.0% |
| !! | GATATAAAAACAACTAAAAA+CGG | + | chr4.4:39025716-39025735 | None:intergenic | 15.0% |
| !!! | AACATATACAAGATTAATTT+TGG | - | chr4.4:39026637-39026656 | MS.gene28318:CDS | 15.0% |
| !!! | AATTTTTCAATTTTTTGTCA+GGG | - | chr4.4:39025637-39025656 | MS.gene28318:intron | 15.0% |
| !!! | TAATTTTTCAATTTTTTGTC+AGG | - | chr4.4:39025636-39025655 | MS.gene28318:intron | 15.0% |
| !!! | TATATATATTTTTCCTTTAG+TGG | - | chr4.4:39027416-39027435 | MS.gene28318:intron | 15.0% |
| !!! | TGAAGACTTAAAAATTATTT+TGG | + | chr4.4:39023186-39023205 | None:intergenic | 15.0% |
| !! | AAGGTAAAATGATTAATGTT+TGG | - | chr4.4:39023057-39023076 | MS.gene28318:intron | 20.0% |
| !! | AATGAATGAATCTAATAAAG+AGG | + | chr4.4:39022726-39022745 | None:intergenic | 20.0% |
| !! | ACAGTTAAAATAGATAAAAG+AGG | + | chr4.4:39024101-39024120 | None:intergenic | 20.0% |
| !! | ATGAATGAATCTAATAAAGA+GGG | + | chr4.4:39022725-39022744 | None:intergenic | 20.0% |
| !! | CAGTTAAAATAGATAAAAGA+GGG | + | chr4.4:39024100-39024119 | None:intergenic | 20.0% |
| !! | CAGTTTATCTTTAAATTTCA+AGG | + | chr4.4:39024790-39024809 | None:intergenic | 20.0% |
| !! | GAATTGAATTATAAGAATGA+TGG | + | chr4.4:39022627-39022646 | None:intergenic | 20.0% |
| !! | GTTATATAGAAAATCCTTAA+GGG | - | chr4.4:39024712-39024731 | MS.gene28318:intron | 20.0% |
| !! | TAAATTGTGATTGTTATGAT+GGG | + | chr4.4:39024056-39024075 | None:intergenic | 20.0% |
| !! | TATAAAGGAAAAAATTGTCA+GGG | + | chr4.4:39026438-39026457 | None:intergenic | 20.0% |
| !! | TCAAATTAACCTACTTATAA+AGG | + | chr4.4:39026453-39026472 | None:intergenic | 20.0% |
| !! | TCTCAATTAAAATAAGTGTA+TGG | + | chr4.4:39026673-39026692 | None:intergenic | 20.0% |
| !! | TGTTATATAGAAAATCCTTA+AGG | - | chr4.4:39024711-39024730 | MS.gene28318:intron | 20.0% |
| !! | TTAAATTGTGATTGTTATGA+TGG | + | chr4.4:39024057-39024076 | None:intergenic | 20.0% |
| !! | TTATAAAGGAAAAAATTGTC+AGG | + | chr4.4:39026439-39026458 | None:intergenic | 20.0% |
| !! | TTATATAGAAAATCCTTAAG+GGG | - | chr4.4:39024713-39024732 | MS.gene28318:intron | 20.0% |
| !! | TTTATGTTCTCTTTAAATCA+AGG | - | chr4.4:39023328-39023347 | MS.gene28318:intron | 20.0% |
| !!! | AGTATCTCAAATTATTTCTA+AGG | - | chr4.4:39023920-39023939 | MS.gene28318:intron | 20.0% |
| !!! | ATATACAAGATTAATTTTGG+AGG | - | chr4.4:39026640-39026659 | MS.gene28318:CDS | 20.0% |
| !!! | ATATTTTTTTGCCCATTTAT+TGG | - | chr4.4:39025138-39025157 | MS.gene28318:CDS | 20.0% |
| !!! | CAATTTTTTCCTTTATAAGT+AGG | - | chr4.4:39026441-39026460 | MS.gene28318:CDS | 20.0% |
| !!! | CTTTTGCTATTTAAGATAAA+TGG | - | chr4.4:39027142-39027161 | MS.gene28318:intron | 20.0% |
| !!! | TCTAGTTTAAAATGAGTTTA+AGG | - | chr4.4:39023038-39023057 | MS.gene28318:intron | 20.0% |
| !!! | TGTTTTTAAATTGAAGGAAT+TGG | - | chr4.4:39025892-39025911 | MS.gene28318:intron | 20.0% |
| !!! | TTCAATTTTCCTATGTATTT+GGG | - | chr4.4:39023804-39023823 | MS.gene28318:intron | 20.0% |
| !!! | TTCTTTATTTAATCTGGATT+TGG | - | chr4.4:39023979-39023998 | MS.gene28318:intron | 20.0% |
| !!! | TTTAAGTTTTTAAGAGAAGT+AGG | - | chr4.4:39024535-39024554 | MS.gene28318:intron | 20.0% |
| ! | AAATTGTGATTGTTATGATG+GGG | + | chr4.4:39024055-39024074 | None:intergenic | 25.0% |
| ! | AACACTAGACTAAGAATATT+GGG | + | chr4.4:39025165-39025184 | None:intergenic | 25.0% |
| ! | AAGAGTTACAAAGTTCAATA+AGG | - | chr4.4:39023737-39023756 | MS.gene28318:intron | 25.0% |
| ! | AATATCATAAATTGTGAGCA+AGG | + | chr4.4:39024232-39024251 | None:intergenic | 25.0% |
| ! | AATTGTGTATCTTTAACCAA+TGG | + | chr4.4:39026209-39026228 | None:intergenic | 25.0% |
| ! | ACAAAATGTTGTCTATAAGA+AGG | + | chr4.4:39024764-39024783 | None:intergenic | 25.0% |
| ! | ACAACTACAATAATCAGATA+TGG | + | chr4.4:39023862-39023881 | None:intergenic | 25.0% |
| ! | ACAGTATTTAAAAAGCAAGT+AGG | + | chr4.4:39025409-39025428 | None:intergenic | 25.0% |
| ! | ATAATCAGATATGGTCATTT+AGG | + | chr4.4:39023853-39023872 | None:intergenic | 25.0% |
| ! | ATGGTATGAAATCCATATAT+AGG | + | chr4.4:39026006-39026025 | None:intergenic | 25.0% |
| ! | ATTCTTATCTTGATTGTTTG+TGG | - | chr4.4:39024974-39024993 | MS.gene28318:CDS | 25.0% |
| ! | CAAAAAATATCAATAGGCTA+AGG | + | chr4.4:39024172-39024191 | None:intergenic | 25.0% |
| ! | TACAAATCCTAACTTTAAGT+TGG | - | chr4.4:39023110-39023129 | MS.gene28318:intron | 25.0% |
| ! | TCATATGAAGCATGATAATA+AGG | - | chr4.4:39024498-39024517 | MS.gene28318:intron | 25.0% |
| ! | TGAAAACTTGAGAATAGAAA+TGG | + | chr4.4:39026025-39026044 | None:intergenic | 25.0% |
| ! | TTAAAGATAAACTGACAACA+GGG | - | chr4.4:39024796-39024815 | MS.gene28318:intron | 25.0% |
| ! | TTATATCAGAACACTTAGAA+GGG | - | chr4.4:39025729-39025748 | MS.gene28318:intron | 25.0% |
| ! | TTTAAAGATAAACTGACAAC+AGG | - | chr4.4:39024795-39024814 | MS.gene28318:intron | 25.0% |
| ! | TTTATATCAGAACACTTAGA+AGG | - | chr4.4:39025728-39025747 | MS.gene28318:intron | 25.0% |
| !! | AAATCAAACCATTTCTAGAA+AGG | + | chr4.4:39025608-39025627 | None:intergenic | 25.0% |
| !! | AAGAGATTTTCTTTTGTATC+GGG | - | chr4.4:39027171-39027190 | MS.gene28318:intron | 25.0% |
| !! | AAGGATGAAATATTTTACAC+TGG | + | chr4.4:39024319-39024338 | None:intergenic | 25.0% |
| !! | AATTTCTTCAATTTGCTTTC+CGG | - | chr4.4:39026380-39026399 | MS.gene28318:CDS | 25.0% |
| !! | ACAAATCCTAACTTTAAGTT+GGG | - | chr4.4:39023111-39023130 | MS.gene28318:intron | 25.0% |
| !! | ATGAAATATTTTACACTGGT+AGG | + | chr4.4:39024315-39024334 | None:intergenic | 25.0% |
| !! | ATGTTTCTATAAGTTTGATG+TGG | - | chr4.4:39023542-39023561 | MS.gene28318:intron | 25.0% |
| !! | ATTGATTTATGCTCTTACTA+AGG | - | chr4.4:39026802-39026821 | MS.gene28318:intron | 25.0% |
| !! | CTTCAATTTTCCTATGTATT+TGG | - | chr4.4:39023803-39023822 | MS.gene28318:intron | 25.0% |
| !! | GAAGAGATTTTCTTTTGTAT+CGG | - | chr4.4:39027170-39027189 | MS.gene28318:intron | 25.0% |
| !! | GAATTATAAGAATGATGGAA+TGG | + | chr4.4:39022622-39022641 | None:intergenic | 25.0% |
| !! | TAAGGCAAAATCTCAATTTT+GGG | + | chr4.4:39022886-39022905 | None:intergenic | 25.0% |
| !! | TCATCATCTTATTTATCCAT+TGG | - | chr4.4:39026190-39026209 | MS.gene28318:intron | 25.0% |
| !! | TTAAGGCAAAATCTCAATTT+TGG | + | chr4.4:39022887-39022906 | None:intergenic | 25.0% |
| !!! | AAATTATTTTGGTATGTCTG+CGG | + | chr4.4:39023175-39023194 | None:intergenic | 25.0% |
| !!! | ATTCAGTTTCTAGTTTCTAT+GGG | + | chr4.4:39027395-39027414 | None:intergenic | 25.0% |
| !!! | CATAAAAGTTTTGTTCATTG+AGG | - | chr4.4:39024585-39024604 | MS.gene28318:intron | 25.0% |
| !!! | CTTAGCCTATTGATATTTTT+TGG | - | chr4.4:39024170-39024189 | MS.gene28318:CDS | 25.0% |
| !!! | TCAAATTGATTCGCATAATT+AGG | - | chr4.4:39022688-39022707 | MS.gene28318:intron | 25.0% |
| AACTGGCAAATATATACACA+AGG | + | chr4.4:39026919-39026938 | None:intergenic | 30.0% | |
| AAGTTGTTCTTGAGAAAGAT+AGG | + | chr4.4:39026727-39026746 | None:intergenic | 30.0% | |
| AATATATACACAAGGAAGTC+TGG | + | chr4.4:39026911-39026930 | None:intergenic | 30.0% | |
| AATCATTGTCATACCAGTAA+TGG | + | chr4.4:39025330-39025349 | None:intergenic | 30.0% | |
| AATTCATATGTACCAGTTCA+CGG | + | chr4.4:39025516-39025535 | None:intergenic | 30.0% | |
| ACACTAGACTAAGAATATTG+GGG | + | chr4.4:39025164-39025183 | None:intergenic | 30.0% | |
| ACTTCTATTCTTAATACAGG+AGG | - | chr4.4:39023584-39023603 | MS.gene28318:intron | 30.0% | |
| AGACAAAATCTCTAATGTAG+AGG | - | chr4.4:39025787-39025806 | MS.gene28318:intron | 30.0% | |
| AGTTGTTCTTGAGAAAGATA+GGG | + | chr4.4:39026726-39026745 | None:intergenic | 30.0% | |
| ATACTAACAAACCCTAATAC+TGG | + | chr4.4:39025265-39025284 | None:intergenic | 30.0% | |
| ATTCAATTGTCAACTGTGTA+TGG | - | chr4.4:39025533-39025552 | MS.gene28318:intron | 30.0% | |
| CTATGCATCATATGTTATAC+CGG | - | chr4.4:39025358-39025377 | MS.gene28318:intron | 30.0% | |
| CTTGTAAGAGAATAATTCCA+TGG | + | chr4.4:39024616-39024635 | None:intergenic | 30.0% | |
| CTTGTTGCAAAACATTTATG+TGG | + | chr4.4:39024654-39024673 | None:intergenic | 30.0% | |
| GAAATTATAGCAATGCTTGA+AGG | + | chr4.4:39025962-39025981 | None:intergenic | 30.0% | |
| GAACACTAGACTAAGAATAT+TGG | + | chr4.4:39025166-39025185 | None:intergenic | 30.0% | |
| GAAGCTAGATAGATTTCTTA+AGG | + | chr4.4:39022904-39022923 | None:intergenic | 30.0% | |
| GAATCAATTTGAATAAGCAG+CGG | + | chr4.4:39022680-39022699 | None:intergenic | 30.0% | |
| GAATGCAATTCTAGCATTTA+TGG | - | chr4.4:39027228-39027247 | MS.gene28318:intron | 30.0% | |
| GAGACTTCTATTCTTAATAC+AGG | - | chr4.4:39023581-39023600 | MS.gene28318:intron | 30.0% | |
| GCAATCTAACAAACATACAA+TGG | + | chr4.4:39025026-39025045 | None:intergenic | 30.0% | |
| GTATGAAATCCATATATAGG+TGG | + | chr4.4:39026003-39026022 | None:intergenic | 30.0% | |
| TAAGAATAGAAGTCTCTTCT+AGG | + | chr4.4:39023577-39023596 | None:intergenic | 30.0% | |
| TACTAACAAACCCTAATACT+GGG | + | chr4.4:39025264-39025283 | None:intergenic | 30.0% | |
| TACTAAGATGTTAAGCCTTA+TGG | - | chr4.4:39024276-39024295 | MS.gene28318:CDS | 30.0% | |
| TACTGTACTTAATCTAGTAC+TGG | - | chr4.4:39025423-39025442 | MS.gene28318:intron | 30.0% | |
| TATATCAGAACACTTAGAAG+GGG | - | chr4.4:39025730-39025749 | MS.gene28318:intron | 30.0% | |
| TATCCTCAACATTCTACAAA+AGG | - | chr4.4:39023430-39023449 | MS.gene28318:intron | 30.0% | |
| TGCTGCCAAAAAATATCAAT+AGG | + | chr4.4:39024178-39024197 | None:intergenic | 30.0% | |
| TTAAATTGAAGGAATTGGTC+AGG | - | chr4.4:39025897-39025916 | MS.gene28318:intron | 30.0% | |
| TTAATTAGTTAGACCCCTTA+AGG | + | chr4.4:39024729-39024748 | None:intergenic | 30.0% | |
| TTCTGATAACTTGAACTCAA+AGG | - | chr4.4:39023407-39023426 | MS.gene28318:intron | 30.0% | |
| TTTAAATCAAGGTTGCTCAA+AGG | - | chr4.4:39023339-39023358 | MS.gene28318:intron | 30.0% | |
| TTTACCTTTCCAGTACATAT+TGG | - | chr4.4:39027061-39027080 | MS.gene28318:intron | 30.0% | |
| ! | AAAGTGTCTGAATGGTAAAA+TGG | - | chr4.4:39026763-39026782 | MS.gene28318:intron | 30.0% |
| ! | CTGTCATGGATAATTTTCTT+AGG | - | chr4.4:39025187-39025206 | MS.gene28318:CDS | 30.0% |
| ! | GTTTTGCAACAAGATTATGA+GGG | - | chr4.4:39024661-39024680 | MS.gene28318:intron | 30.0% |
| ! | TCAATGATAAAGTGTCTGAA+TGG | - | chr4.4:39026755-39026774 | MS.gene28318:intron | 30.0% |
| ! | TGTCTATAAGAAGGTATGAT+GGG | + | chr4.4:39024755-39024774 | None:intergenic | 30.0% |
| ! | TGTTTTGCAACAAGATTATG+AGG | - | chr4.4:39024660-39024679 | MS.gene28318:intron | 30.0% |
| ! | TTGTCTATAAGAAGGTATGA+TGG | + | chr4.4:39024756-39024775 | None:intergenic | 30.0% |
| ! | TTTGAGTTCAAGTTATCAGA+AGG | + | chr4.4:39023408-39023427 | None:intergenic | 30.0% |
| !! | CATTCAGTTTCTAGTTTCTA+TGG | + | chr4.4:39027396-39027415 | None:intergenic | 30.0% |
| !! | TGTTTTATTGCGAACAAAAC+TGG | + | chr4.4:39027109-39027128 | None:intergenic | 30.0% |
| !!! | ATTGATATTTTTTGGCAGCA+AGG | - | chr4.4:39024178-39024197 | MS.gene28318:CDS | 30.0% |
| !!! | GAGGCTTGTTTTTAAATTGA+AGG | - | chr4.4:39025886-39025905 | MS.gene28318:intron | 30.0% |
| !!! | TTATACCGGTTTTAGAAGAT+GGG | - | chr4.4:39025372-39025391 | MS.gene28318:intron | 30.0% |
| AAATCCATATATAGGTGGTG+AGG | + | chr4.4:39025998-39026017 | None:intergenic | 35.0% | |
| AAGTTAGGATTTGTAGTCTG+TGG | + | chr4.4:39023105-39023124 | None:intergenic | 35.0% | |
| ACAAATTGCGTGAATTAGCT+TGG | - | chr4.4:39024363-39024382 | MS.gene28318:CDS | 35.0% | |
| ACCACCTAATTCAGATAGAA+AGG | - | chr4.4:39024825-39024844 | MS.gene28318:intron | 35.0% | |
| ACCTAATTCAGATAGAAAGG+AGG | - | chr4.4:39024828-39024847 | MS.gene28318:intron | 35.0% | |
| ACCTGATATGTATCCATTAC+TGG | - | chr4.4:39025314-39025333 | MS.gene28318:intron | 35.0% | |
| ACTAACAAACCCTAATACTG+GGG | + | chr4.4:39025263-39025282 | None:intergenic | 35.0% | |
| ACTGATCCCAACTTAAAGTT+AGG | + | chr4.4:39023120-39023139 | None:intergenic | 35.0% | |
| AGAATATTGGGGCCAATAAA+TGG | + | chr4.4:39025153-39025172 | None:intergenic | 35.0% | |
| ATATCAGAACACTTAGAAGG+GGG | - | chr4.4:39025731-39025750 | MS.gene28318:intron | 35.0% | |
| ATATGGATGTCAAACTGTCA+AGG | + | chr4.4:39024338-39024357 | None:intergenic | 35.0% | |
| ATGGTCATTTAGGAGTAACA+AGG | + | chr4.4:39023843-39023862 | None:intergenic | 35.0% | |
| CAACCATACAAAATACAGCA+GGG | + | chr4.4:39027329-39027348 | None:intergenic | 35.0% | |
| CACGCAATTTGTCTACAATA+TGG | + | chr4.4:39024355-39024374 | None:intergenic | 35.0% | |
| CATTATCAGCCAATATGTAC+TGG | + | chr4.4:39027073-39027092 | None:intergenic | 35.0% | |
| CCTAATTCAGATAGAAAGGA+GGG | - | chr4.4:39024829-39024848 | MS.gene28318:intron | 35.0% | |
| GAATATTGGGGCCAATAAAT+GGG | + | chr4.4:39025152-39025171 | None:intergenic | 35.0% | |
| GGAAAAAAGAAATTCTCGAC+AGG | + | chr4.4:39027308-39027327 | None:intergenic | 35.0% | |
| GGCAAAAATAGGTTTCCATA+AGG | + | chr4.4:39024294-39024313 | None:intergenic | 35.0% | |
| TAAAAATCTCAACCTCCCTT+GGG | - | chr4.4:39023655-39023674 | MS.gene28318:intron | 35.0% | |
| TAATGAGCAATAACACTGTC+TGG | + | chr4.4:39025463-39025482 | None:intergenic | 35.0% | |
| TACAGTTCTTGGACAATCAA+CGG | + | chr4.4:39025048-39025067 | None:intergenic | 35.0% | |
| TACTGGTATGACAATGATTC+AGG | - | chr4.4:39025331-39025350 | MS.gene28318:intron | 35.0% | |
| TCACAACATATAGAGGATCA+GGG | - | chr4.4:39026352-39026371 | MS.gene28318:CDS | 35.0% | |
| TCCTCTATATGTTGTGAAAC+AGG | + | chr4.4:39026349-39026368 | None:intergenic | 35.0% | |
| TCCTTTCTATCTGAATTAGG+TGG | + | chr4.4:39024829-39024848 | None:intergenic | 35.0% | |
| TCTATTCTTAATACAGGAGG+AGG | - | chr4.4:39023587-39023606 | MS.gene28318:intron | 35.0% | |
| TCTGCTCATCAATACTTTAC+CGG | + | chr4.4:39023376-39023395 | None:intergenic | 35.0% | |
| TGGAACGTATTCTTTATGCA+TGG | - | chr4.4:39025111-39025130 | MS.gene28318:intron | 35.0% | |
| TTAAAAATCTCAACCTCCCT+TGG | - | chr4.4:39023654-39023673 | MS.gene28318:intron | 35.0% | |
| TTAAACTCAGTGAGTGTGTT+TGG | - | chr4.4:39022980-39022999 | MS.gene28318:intron | 35.0% | |
| TTACACTGGTAGGCAAAAAT+AGG | + | chr4.4:39024305-39024324 | None:intergenic | 35.0% | |
| TTCACAACATATAGAGGATC+AGG | - | chr4.4:39026351-39026370 | MS.gene28318:CDS | 35.0% | |
| TTCTTGAGAAAGATAGGGTT+TGG | + | chr4.4:39026721-39026740 | None:intergenic | 35.0% | |
| ! | AAGTTCAATAAGGTGCTTTC+TGG | - | chr4.4:39023747-39023766 | MS.gene28318:intron | 35.0% |
| ! | ACTCCTTTTGTAGAATGTTG+AGG | + | chr4.4:39023436-39023455 | None:intergenic | 35.0% |
| ! | ATGGTACTGAATGATACTCT+TGG | - | chr4.4:39025552-39025571 | MS.gene28318:intron | 35.0% |
| ! | CACGTATTCCTTTCTAGAAA+TGG | - | chr4.4:39025597-39025616 | MS.gene28318:intron | 35.0% |
| ! | TAGGTTAATTTGAGTCAGCT+TGG | - | chr4.4:39026460-39026479 | MS.gene28318:CDS | 35.0% |
| ! | TCTGGAACAGTGGTTATATT+AGG | - | chr4.4:39023765-39023784 | MS.gene28318:intron | 35.0% |
| ! | TTACGTTCATGATTTTCTCG+TGG | + | chr4.4:39022504-39022523 | None:intergenic | 35.0% |
| ! | TTTCCCTGCTGTATTTTGTA+TGG | - | chr4.4:39027323-39027342 | MS.gene28318:intron | 35.0% |
| !! | ACCAGTAATGGATACATATC+AGG | + | chr4.4:39025318-39025337 | None:intergenic | 35.0% |
| !! | GTAAAGTATTGATGAGCAGA+AGG | - | chr4.4:39023376-39023395 | MS.gene28318:intron | 35.0% |
| !!! | GTTATACCGGTTTTAGAAGA+TGG | - | chr4.4:39025371-39025390 | MS.gene28318:intron | 35.0% |
| AAAAATCTCAACCTCCCTTG+GGG | - | chr4.4:39023656-39023675 | MS.gene28318:intron | 40.0% | |
| AAAACAAGCCTCTGAATTCC+AGG | + | chr4.4:39025878-39025897 | None:intergenic | 40.0% | |
| AAAGATGACTCTTAGCTGCT+TGG | - | chr4.4:39025212-39025231 | MS.gene28318:CDS | 40.0% | |
| AAGTCTTCAGAATCACTTCG+AGG | - | chr4.4:39023197-39023216 | MS.gene28318:CDS | 40.0% | |
| AATGCCTCACCACCTATATA+TGG | - | chr4.4:39025991-39026010 | MS.gene28318:intron | 40.0% | |
| AATTGAAGGAATTGGTCAGG+AGG | - | chr4.4:39025900-39025919 | MS.gene28318:intron | 40.0% | |
| ACAGCAAGTTCAGAAGTCAT+TGG | - | chr4.4:39025091-39025110 | MS.gene28318:intron | 40.0% | |
| AGACTCTACGAAACGTTCAA+GGG | - | chr4.4:39022562-39022581 | MS.gene28318:CDS | 40.0% | |
| AGGCTAAGGCAACAATAATG+CGG | + | chr4.4:39024158-39024177 | None:intergenic | 40.0% | |
| AGTGCGAGCAAAATAGAAGA+AGG | + | chr4.4:39024451-39024470 | None:intergenic | 40.0% | |
| AGTTTCTCACACAATGATGC+TGG | - | chr4.4:39023453-39023472 | MS.gene28318:intron | 40.0% | |
| ATATGTACCAGTTCACGGAA+AGG | + | chr4.4:39025511-39025530 | None:intergenic | 40.0% | |
| ATATGTTGTGAAACAGGCTC+TGG | + | chr4.4:39026343-39026362 | None:intergenic | 40.0% | |
| ATATTAGAGCTCCGAATACC+TGG | + | chr4.4:39024954-39024973 | None:intergenic | 40.0% | |
| ATTATATGCGCCCTAAAGTG+TGG | - | chr4.4:39024399-39024418 | MS.gene28318:CDS | 40.0% | |
| ATTTGCCAGTTTCCTTCTCA+CGG | - | chr4.4:39026928-39026947 | MS.gene28318:intron | 40.0% | |
| CATTACACATTTGCTCAACC+TGG | - | chr4.4:39025857-39025876 | MS.gene28318:intron | 40.0% | |
| CCCTCCTTTCTATCTGAATT+AGG | + | chr4.4:39024832-39024851 | None:intergenic | 40.0% | |
| CGCAGTTCAAAAGTTTCAAC+AGG | + | chr4.4:39026320-39026339 | None:intergenic | 40.0% | |
| CTCTTGGTGAATCTTAGAAG+AGG | - | chr4.4:39025568-39025587 | MS.gene28318:intron | 40.0% | |
| CTGCTCATCAATACTTTACC+GGG | + | chr4.4:39023375-39023394 | None:intergenic | 40.0% | |
| GCAACCATACAAAATACAGC+AGG | + | chr4.4:39027330-39027349 | None:intergenic | 40.0% | |
| GCCTGTTTCACAACATATAG+AGG | - | chr4.4:39026345-39026364 | MS.gene28318:CDS | 40.0% | |
| TAGTCTAGTGTTCTCTGTCA+TGG | - | chr4.4:39025173-39025192 | MS.gene28318:CDS | 40.0% | |
| TATATCTCCTTTCCGTGAAC+TGG | - | chr4.4:39025501-39025520 | MS.gene28318:intron | 40.0% | |
| TATCAGGTACCAGTATCTAG+CGG | + | chr4.4:39025302-39025321 | None:intergenic | 40.0% | |
| TCAAAAGACAGTTGAACCAC+CGG | + | chr4.4:39026402-39026421 | None:intergenic | 40.0% | |
| TCAGCCAATATGTACTGGAA+AGG | + | chr4.4:39027068-39027087 | None:intergenic | 40.0% | |
| TCAGCTACGACTTGAATCTT+GGG | - | chr4.4:39022806-39022825 | MS.gene28318:intron | 40.0% | |
| TGAGTTTGTCTGACCACTAA+AGG | + | chr4.4:39027432-39027451 | None:intergenic | 40.0% | |
| TGCGAACAAAACTGGAAATC+AGG | + | chr4.4:39027101-39027120 | None:intergenic | 40.0% | |
| TGTTCAGGAATGGTACTTGT+TGG | - | chr4.4:39027020-39027039 | MS.gene28318:intron | 40.0% | |
| TGTTGGAAGAATGTAACGTC+AGG | + | chr4.4:39025071-39025090 | None:intergenic | 40.0% | |
| TTCAGCTACGACTTGAATCT+TGG | - | chr4.4:39022805-39022824 | MS.gene28318:intron | 40.0% | |
| ! | CAGGTTGAGCAAATGTGTAA+TGG | + | chr4.4:39025859-39025878 | None:intergenic | 40.0% |
| ! | CTATAAGAAGGTATGATGGG+AGG | + | chr4.4:39024752-39024771 | None:intergenic | 40.0% |
| ! | TAGAAGGGGGTATAGATGAT+TGG | - | chr4.4:39025744-39025763 | MS.gene28318:intron | 40.0% |
| ! | TTCGGATAAGTTTTCCCCAA+GGG | + | chr4.4:39023673-39023692 | None:intergenic | 40.0% |
| ! | TTCTTCAATTTGCTTTCCGG+TGG | - | chr4.4:39026383-39026402 | MS.gene28318:CDS | 40.0% |
| ! | TTGTGATTGTTATGATGGGG+CGG | + | chr4.4:39024052-39024071 | None:intergenic | 40.0% |
| !! | ACTTCTGAACTTGCTGTTGT+TGG | + | chr4.4:39025088-39025107 | None:intergenic | 40.0% |
| !! | ACTTTAGGGCGCATATAATC+TGG | + | chr4.4:39024398-39024417 | None:intergenic | 40.0% |
| !! | GAAGTCCCATCTTCTAAAAC+CGG | + | chr4.4:39025380-39025399 | None:intergenic | 40.0% |
| !!! | AGATGGTACGCTTTTTTCTC+AGG | - | chr4.4:39025925-39025944 | MS.gene28318:intron | 40.0% |
| AACACCTTCCAACTCAGAAC+TGG | - | chr4.4:39027488-39027507 | MS.gene28318:intron | 45.0% | |
| AACATGCTTCGCCAGGTATT+CGG | - | chr4.4:39024940-39024959 | MS.gene28318:intron | 45.0% | |
| AAGAGGAGTCTCCACACTTT+AGG | + | chr4.4:39024413-39024432 | None:intergenic | 45.0% | |
| ACTCAAGAGCTTGGAATTCC+AGG | - | chr4.4:39027447-39027466 | MS.gene28318:intron | 45.0% | |
| ACTCCTCTTGGTAAGCTCTA+TGG | - | chr4.4:39024424-39024443 | MS.gene28318:intron | 45.0% | |
| AGAGGAGTCTCCACACTTTA+GGG | + | chr4.4:39024412-39024431 | None:intergenic | 45.0% | |
| AGATAGAAAGGAGGGAGTTC+TGG | - | chr4.4:39024837-39024856 | MS.gene28318:intron | 45.0% | |
| AGCACAACTTCCCCAGTATT+AGG | - | chr4.4:39025250-39025269 | MS.gene28318:CDS | 45.0% | |
| AGGCGTGTGATGAGATCAAA+TGG | + | chr4.4:39026854-39026873 | None:intergenic | 45.0% | |
| ATACACAAGGAAGTCTGGCA+AGG | + | chr4.4:39026906-39026925 | None:intergenic | 45.0% | |
| ATCAGGTACCAGTATCTAGC+GGG | + | chr4.4:39025301-39025320 | None:intergenic | 45.0% | |
| ATGTAGAGGCTGATTGCTAC+TGG | - | chr4.4:39025801-39025820 | MS.gene28318:intron | 45.0% | |
| ATTGTGTACCCGCTAGATAC+TGG | - | chr4.4:39025290-39025309 | MS.gene28318:intron | 45.0% | |
| CAGACTCTACGAAACGTTCA+AGG | - | chr4.4:39022561-39022580 | MS.gene28318:CDS | 45.0% | |
| CAGCTAGATATGTGTCCCAA+AGG | + | chr4.4:39026874-39026893 | None:intergenic | 45.0% | |
| CATTCCTGAACAGCAAGACT+AGG | + | chr4.4:39027012-39027031 | None:intergenic | 45.0% | |
| CATTTATGTGGCCAGCATCA+AGG | + | chr4.4:39024642-39024661 | None:intergenic | 45.0% | |
| CTTACAAGAGACCTTGATGC+TGG | - | chr4.4:39024628-39024647 | MS.gene28318:intron | 45.0% | |
| CTTGAACGTTTCGTAGAGTC+TGG | + | chr4.4:39022563-39022582 | None:intergenic | 45.0% | |
| GAACTGGGCGTAGACAATTA+AGG | + | chr4.4:39027267-39027286 | None:intergenic | 45.0% | |
| GAAGGAACATTACCAACTCC+TGG | + | chr4.4:39027468-39027487 | None:intergenic | 45.0% | |
| GAATTGGTCAGGAGGATAGA+TGG | - | chr4.4:39025908-39025927 | MS.gene28318:intron | 45.0% | |
| GACGATCAGCCCAAATACAT+AGG | + | chr4.4:39023816-39023835 | None:intergenic | 45.0% | |
| GAGAACTAGACACACACACT+CGG | - | chr4.4:39023287-39023306 | MS.gene28318:intron | 45.0% | |
| GATAGAAAGGAGGGAGTTCT+GGG | - | chr4.4:39024838-39024857 | MS.gene28318:intron | 45.0% | |
| GCACAACTTCCCCAGTATTA+GGG | - | chr4.4:39025251-39025270 | MS.gene28318:intron | 45.0% | |
| GGCACAAGTGATCAGATATC+TGG | - | chr4.4:39023474-39023493 | MS.gene28318:intron | 45.0% | |
| GGCTAAGGCAACAATAATGC+GGG | + | chr4.4:39024157-39024176 | None:intergenic | 45.0% | |
| GTAACGTCAGGTACAGTTCT+TGG | + | chr4.4:39025059-39025078 | None:intergenic | 45.0% | |
| GTCAGACAAACTCAAGAGCT+TGG | - | chr4.4:39027438-39027457 | MS.gene28318:intron | 45.0% | |
| TAAAGTGTGGAGACTCCTCT+TGG | - | chr4.4:39024412-39024431 | MS.gene28318:intron | 45.0% | |
| TAGCGCCAATGGTATACTTG+CGG | + | chr4.4:39023701-39023720 | None:intergenic | 45.0% | |
| TCAGATATCTGGTGCAGTAG+AGG | - | chr4.4:39023485-39023504 | MS.gene28318:intron | 45.0% | |
| TGATCTCATCACACGCCTTT+GGG | - | chr4.4:39026856-39026875 | MS.gene28318:intron | 45.0% | |
| TGGGACACATATCTAGCTGA+AGG | - | chr4.4:39026875-39026894 | MS.gene28318:intron | 45.0% | |
| TGTTTGTCGAAGTTGCTCGA+CGG | - | chr4.4:39025824-39025843 | MS.gene28318:intron | 45.0% | |
| TTCAGAACGTTCAGACGATG+AGG | - | chr4.4:39024915-39024934 | MS.gene28318:intron | 45.0% | |
| TTGATCTCATCACACGCCTT+TGG | - | chr4.4:39026855-39026874 | MS.gene28318:intron | 45.0% | |
| TTGCTCAACCTGGAATTCAG+AGG | - | chr4.4:39025867-39025886 | MS.gene28318:intron | 45.0% | |
| ! | AGTATCTAGCGGGTACACAA+TGG | + | chr4.4:39025291-39025310 | None:intergenic | 45.0% |
| ! | CCTGCTAGTGGATATGTTCA+GGG | - | chr4.4:39025671-39025690 | MS.gene28318:CDS | 45.0% |
| ! | CGTTCATGATTTTCTCGTGG+AGG | + | chr4.4:39022501-39022520 | None:intergenic | 45.0% |
| ! | CTGCTAGTGGATATGTTCAG+GGG | - | chr4.4:39025672-39025691 | MS.gene28318:CDS | 45.0% |
| ! | CTTCGGATAAGTTTTCCCCA+AGG | + | chr4.4:39023674-39023693 | None:intergenic | 45.0% |
| ! | TCCTGCTAGTGGATATGTTC+AGG | - | chr4.4:39025670-39025689 | MS.gene28318:CDS | 45.0% |
| ! | TCGTCTGAACGTTCTGAATC+TGG | + | chr4.4:39024913-39024932 | None:intergenic | 45.0% |
| ! | TCGTTTTCCACAAGTGCTTC+TGG | + | chr4.4:39026495-39026514 | None:intergenic | 45.0% |
| ! | TGTAGTCTGTGGCTCTACTT+TGG | + | chr4.4:39023094-39023113 | None:intergenic | 45.0% |
| ! | TTGCGTGAATTAGCTTGGAG+TGG | - | chr4.4:39024368-39024387 | MS.gene28318:CDS | 45.0% |
| !! | ATCTCCTAGTCTTGCTGTTC+AGG | - | chr4.4:39027005-39027024 | MS.gene28318:intron | 45.0% |
| !! | CTAGTCTTGCTGTTCAGGAA+TGG | - | chr4.4:39027010-39027029 | MS.gene28318:intron | 45.0% |
| !! | TAAGGTGCTTTCTGGAACAG+TGG | - | chr4.4:39023755-39023774 | MS.gene28318:intron | 45.0% |
| !! | TCTGAGTTGGAAGGTGTTGA+AGG | + | chr4.4:39027486-39027505 | None:intergenic | 45.0% |
| AACTCAGAACTGGACTCACC+AGG | - | chr4.4:39027498-39027517 | MS.gene28318:intron | 50.0% | |
| AATTGTCAGGGCAAACCTCG+CGG | + | chr4.4:39026426-39026445 | None:intergenic | 50.0% | |
| AATTGTCTACGCCCAGTTCG+AGG | - | chr4.4:39027268-39027287 | MS.gene28318:intron | 50.0% | |
| AGCGCCAATGGTATACTTGC+GGG | + | chr4.4:39023700-39023719 | None:intergenic | 50.0% | |
| ATGTGCATGCACCTCGAACT+GGG | + | chr4.4:39027282-39027301 | None:intergenic | 50.0% | |
| CCCTGAACATATCCACTAGC+AGG | + | chr4.4:39025674-39025693 | None:intergenic | 50.0% | |
| GACACCCGCAAGTATACCAT+TGG | - | chr4.4:39023693-39023712 | MS.gene28318:CDS | 50.0% | |
| GAGCTTGGAATTCCAGGAGT+TGG | - | chr4.4:39027453-39027472 | MS.gene28318:intron | 50.0% | |
| GCAATTCGACATCCTGCTAG+TGG | - | chr4.4:39025659-39025678 | MS.gene28318:CDS | 50.0% | |
| GGTATACTTGCGGGTGTCTT+CGG | + | chr4.4:39023691-39023710 | None:intergenic | 50.0% | |
| GGTCCATAGAGCTTACCAAG+AGG | + | chr4.4:39024430-39024449 | None:intergenic | 50.0% | |
| TAAGCTAGCTCACCGTGAGA+AGG | + | chr4.4:39026943-39026962 | None:intergenic | 50.0% | |
| TACCATTGGCGCTAGAGCTA+CGG | - | chr4.4:39023707-39023726 | MS.gene28318:CDS | 50.0% | |
| TATGTGCATGCACCTCGAAC+TGG | + | chr4.4:39027283-39027302 | None:intergenic | 50.0% | |
| TCGTAGAGTCTGGCTGAATC+TGG | + | chr4.4:39022553-39022572 | None:intergenic | 50.0% | |
| TGCTGTGCCACATAAATGCC+CGG | + | chr4.4:39027543-39027562 | None:intergenic | 50.0% | |
| TGCTTTCCCGGGCATTTATG+TGG | - | chr4.4:39027533-39027552 | MS.gene28318:CDS | 50.0% | |
| TGTTCATTGAGGCTGAGCCA+TGG | - | chr4.4:39024596-39024615 | MS.gene28318:intron | 50.0% | |
| ! | CAACTGTCTTTTGATCCGCG+AGG | - | chr4.4:39026408-39026427 | MS.gene28318:CDS | 50.0% |
| ! | CACGGTGAGCTAGCTTACTT+TGG | - | chr4.4:39026946-39026965 | MS.gene28318:intron | 50.0% |
| ! | GGATAAGTTTTCCCCAAGGG+AGG | + | chr4.4:39023670-39023689 | None:intergenic | 50.0% |
| ! | GTTATGATGGGGCGGTGATA+TGG | + | chr4.4:39024044-39024063 | None:intergenic | 50.0% |
| !! | GAGTCCAGTTCTGAGTTGGA+AGG | + | chr4.4:39027495-39027514 | None:intergenic | 50.0% |
| !! | TGAGTGTGTTTGGCTCTGTG+CGG | - | chr4.4:39022990-39023009 | MS.gene28318:intron | 50.0% |
| !! | TGGTGAGTCCAGTTCTGAGT+TGG | + | chr4.4:39027499-39027518 | None:intergenic | 50.0% |
| ACCTCGAGATGGTGCTTTCC+CGG | - | chr4.4:39027521-39027540 | MS.gene28318:CDS | 55.0% | |
| CTCAAAGGTCGTAGCATGCC+CGG | - | chr4.4:39023354-39023373 | MS.gene28318:intron | 55.0% | |
| GCTCACCGTGAGAAGGAAAC+TGG | + | chr4.4:39026936-39026955 | None:intergenic | 55.0% | |
| GCTGTGCCACATAAATGCCC+GGG | + | chr4.4:39027542-39027561 | None:intergenic | 55.0% | |
| GGCGGTGATATGGAAGACTG+CGG | + | chr4.4:39024034-39024053 | None:intergenic | 55.0% | |
| TGAGGTCAACATGCTTCGCC+AGG | - | chr4.4:39024933-39024952 | MS.gene28318:intron | 55.0% | |
| TGGCGCTAGAGCTACGGATT+CGG | - | chr4.4:39023713-39023732 | MS.gene28318:CDS | 55.0% | |
| ! | AAAGCACCATCTCGAGGTCC+TGG | + | chr4.4:39027519-39027538 | None:intergenic | 55.0% |
| !! | ATCCGTAGCTCTAGCGCCAA+TGG | + | chr4.4:39023712-39023731 | None:intergenic | 55.0% |
| !! | GAAAGGAGGGAGTTCTGGGA+AGG | - | chr4.4:39024842-39024861 | MS.gene28318:intron | 55.0% |
| CCTCGAGATGGTGCTTTCCC+GGG | - | chr4.4:39027522-39027541 | MS.gene28318:CDS | 60.0% | |
| GACTCACCAGGACCTCGAGA+TGG | - | chr4.4:39027510-39027529 | MS.gene28318:CDS | 60.0% | |
| !! | GGAGTTCTGGGAAGGAAGCG+CGG | - | chr4.4:39024850-39024869 | MS.gene28318:intron | 60.0% |
| !! | CCCGGGAAAGCACCATCTCG+AGG | + | chr4.4:39027525-39027544 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39022489 | 39027597 | 39022489 | ID=MS.gene28318 |
| chr4.4 | mRNA | 39022489 | 39027597 | 39022489 | ID=MS.gene28318.t1;Parent=MS.gene28318 |
| chr4.4 | exon | 39027503 | 39027597 | 39027503 | ID=MS.gene28318.t1.exon1;Parent=MS.gene28318.t1 |
| chr4.4 | CDS | 39027503 | 39027597 | 39027503 | ID=cds.MS.gene28318.t1;Parent=MS.gene28318.t1 |
| chr4.4 | exon | 39026580 | 39026736 | 39026580 | ID=MS.gene28318.t1.exon2;Parent=MS.gene28318.t1 |
| chr4.4 | CDS | 39026580 | 39026736 | 39026580 | ID=cds.MS.gene28318.t1;Parent=MS.gene28318.t1 |
| chr4.4 | exon | 39026300 | 39026483 | 39026300 | ID=MS.gene28318.t1.exon3;Parent=MS.gene28318.t1 |
| chr4.4 | CDS | 39026300 | 39026483 | 39026300 | ID=cds.MS.gene28318.t1;Parent=MS.gene28318.t1 |
| chr4.4 | exon | 39025653 | 39025723 | 39025653 | ID=MS.gene28318.t1.exon4;Parent=MS.gene28318.t1 |
| chr4.4 | CDS | 39025653 | 39025723 | 39025653 | ID=cds.MS.gene28318.t1;Parent=MS.gene28318.t1 |
| chr4.4 | exon | 39025132 | 39025269 | 39025132 | ID=MS.gene28318.t1.exon5;Parent=MS.gene28318.t1 |
| chr4.4 | CDS | 39025132 | 39025269 | 39025132 | ID=cds.MS.gene28318.t1;Parent=MS.gene28318.t1 |
| chr4.4 | exon | 39024954 | 39025045 | 39024954 | ID=MS.gene28318.t1.exon6;Parent=MS.gene28318.t1 |
| chr4.4 | CDS | 39024954 | 39025045 | 39024954 | ID=cds.MS.gene28318.t1;Parent=MS.gene28318.t1 |
| chr4.4 | exon | 39024157 | 39024428 | 39024157 | ID=MS.gene28318.t1.exon7;Parent=MS.gene28318.t1 |
| chr4.4 | CDS | 39024157 | 39024428 | 39024157 | ID=cds.MS.gene28318.t1;Parent=MS.gene28318.t1 |
| chr4.4 | exon | 39023657 | 39023742 | 39023657 | ID=MS.gene28318.t1.exon8;Parent=MS.gene28318.t1 |
| chr4.4 | CDS | 39023657 | 39023742 | 39023657 | ID=cds.MS.gene28318.t1;Parent=MS.gene28318.t1 |
| chr4.4 | exon | 39023137 | 39023238 | 39023137 | ID=MS.gene28318.t1.exon9;Parent=MS.gene28318.t1 |
| chr4.4 | CDS | 39023137 | 39023238 | 39023137 | ID=cds.MS.gene28318.t1;Parent=MS.gene28318.t1 |
| chr4.4 | exon | 39022489 | 39022650 | 39022489 | ID=MS.gene28318.t1.exon10;Parent=MS.gene28318.t1 |
| chr4.4 | CDS | 39022489 | 39022650 | 39022489 | ID=cds.MS.gene28318.t1;Parent=MS.gene28318.t1 |
| Gene Sequence |
| Protein sequence |
