Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056606.t1 | XP_003606828.2 | 93.8 | 403 | 22 | 1 | 1 | 400 | 1 | 403 | 2.30E-211 | 745 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056606.t1 | Q9NU19 | 52.6 | 272 | 126 | 1 | 127 | 398 | 182 | 450 | 2.0e-78 | 294.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056606.t1 | G7JEW7 | 93.8 | 403 | 22 | 1 | 1 | 400 | 1 | 403 | 1.6e-211 | 745.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056404 | MS.gene056606 | 0.903117 | 4.83E-79 | -1.69E-46 |
| MS.gene056606 | MS.gene063652 | 0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene056606 | MS.gene28318 | 0.817961 | 2.51E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056606 | MS.gene049260 | PPI |
| MS.gene056606 | MS.gene06367 | PPI |
| MS.gene056606 | MS.gene013282 | PPI |
| MS.gene056606 | MS.gene40923 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056606.t1 | MTR_4g068180 | 96.526 | 403 | 11 | 1 | 1 | 400 | 1 | 403 | 0.0 | 803 |
| MS.gene056606.t1 | MTR_2g099380 | 79.231 | 390 | 79 | 1 | 11 | 400 | 9 | 396 | 0.0 | 645 |
| MS.gene056606.t1 | MTR_2g099380 | 77.301 | 326 | 72 | 1 | 11 | 336 | 9 | 332 | 0.0 | 520 |
| MS.gene056606.t1 | MTR_3g083840 | 27.129 | 317 | 162 | 9 | 138 | 398 | 88 | 391 | 2.48e-23 | 102 |
| MS.gene056606.t1 | MTR_8g085300 | 26.608 | 342 | 182 | 8 | 113 | 398 | 74 | 402 | 2.59e-22 | 99.8 |
| MS.gene056606.t1 | MTR_4g114580 | 27.273 | 319 | 163 | 8 | 138 | 400 | 116 | 421 | 5.22e-22 | 99.0 |
| MS.gene056606.t1 | MTR_1g069705 | 27.397 | 292 | 147 | 12 | 120 | 376 | 46 | 307 | 5.41e-18 | 86.7 |
| MS.gene056606.t1 | MTR_4g115090 | 25.610 | 246 | 149 | 7 | 140 | 376 | 350 | 570 | 2.69e-15 | 79.0 |
| MS.gene056606.t1 | MTR_6g016590 | 25.260 | 289 | 147 | 9 | 113 | 382 | 40 | 278 | 3.52e-15 | 77.4 |
| MS.gene056606.t1 | MTR_2g099185 | 27.219 | 169 | 99 | 2 | 213 | 380 | 372 | 517 | 1.46e-14 | 76.6 |
| MS.gene056606.t1 | MTR_2g099185 | 27.219 | 169 | 99 | 2 | 213 | 380 | 367 | 512 | 2.43e-14 | 75.9 |
| MS.gene056606.t1 | MTR_2g099185 | 27.219 | 169 | 99 | 2 | 213 | 380 | 367 | 512 | 2.58e-14 | 75.9 |
| MS.gene056606.t1 | MTR_5g098140 | 25.523 | 239 | 134 | 6 | 148 | 382 | 106 | 304 | 3.02e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056606.t1 | AT2G30710 | 73.491 | 381 | 96 | 3 | 20 | 400 | 13 | 388 | 0.0 | 584 |
| MS.gene056606.t1 | AT1G04830 | 27.586 | 348 | 181 | 10 | 109 | 398 | 72 | 406 | 1.29e-25 | 109 |
| MS.gene056606.t1 | AT1G04830 | 27.586 | 348 | 181 | 10 | 109 | 398 | 72 | 406 | 1.29e-25 | 109 |
| MS.gene056606.t1 | AT4G13730 | 25.552 | 317 | 178 | 6 | 127 | 398 | 96 | 399 | 8.16e-22 | 98.2 |
| MS.gene056606.t1 | AT4G13730 | 25.000 | 328 | 177 | 7 | 127 | 398 | 96 | 410 | 6.17e-20 | 92.8 |
| MS.gene056606.t1 | AT4G13730 | 25.152 | 330 | 174 | 8 | 127 | 400 | 96 | 408 | 9.93e-20 | 91.7 |
| MS.gene056606.t1 | AT3G02460 | 26.383 | 235 | 123 | 6 | 155 | 382 | 88 | 279 | 9.29e-17 | 81.6 |
| MS.gene056606.t1 | AT3G02460 | 26.383 | 235 | 123 | 6 | 155 | 382 | 88 | 279 | 1.39e-16 | 81.6 |
| MS.gene056606.t1 | AT3G02460 | 26.383 | 235 | 123 | 6 | 155 | 382 | 88 | 279 | 1.40e-16 | 81.6 |
| MS.gene056606.t1 | AT3G02460 | 25.301 | 249 | 136 | 6 | 155 | 396 | 88 | 293 | 3.10e-16 | 80.1 |
| MS.gene056606.t1 | AT3G02460 | 26.068 | 234 | 123 | 6 | 155 | 381 | 88 | 278 | 4.08e-16 | 79.3 |
| MS.gene056606.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 7.06e-16 | 80.1 |
| MS.gene056606.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 7.06e-16 | 80.1 |
| MS.gene056606.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 7.06e-16 | 80.1 |
| MS.gene056606.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 7.06e-16 | 80.1 |
| MS.gene056606.t1 | AT3G07890 | 26.360 | 239 | 132 | 5 | 148 | 382 | 109 | 307 | 7.06e-16 | 80.1 |
| MS.gene056606.t1 | AT5G15930 | 25.532 | 235 | 125 | 7 | 155 | 382 | 85 | 276 | 4.53e-15 | 77.0 |
| MS.gene056606.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 355 | 500 | 3.21e-14 | 75.9 |
| MS.gene056606.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 355 | 500 | 3.21e-14 | 75.9 |
| MS.gene056606.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 3.30e-14 | 75.9 |
| MS.gene056606.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 3.34e-14 | 75.9 |
| MS.gene056606.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 3.39e-14 | 75.9 |
| MS.gene056606.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 3.39e-14 | 75.9 |
| MS.gene056606.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 3.39e-14 | 75.9 |
| MS.gene056606.t1 | AT2G43490 | 27.811 | 169 | 98 | 2 | 213 | 380 | 359 | 504 | 3.39e-14 | 75.9 |
| MS.gene056606.t1 | AT3G59570 | 27.219 | 169 | 99 | 2 | 213 | 380 | 363 | 508 | 2.10e-13 | 73.2 |
| MS.gene056606.t1 | AT3G59570 | 27.219 | 169 | 99 | 2 | 213 | 380 | 363 | 508 | 2.50e-13 | 73.2 |
| MS.gene056606.t1 | AT3G59570 | 27.219 | 169 | 99 | 2 | 213 | 380 | 363 | 508 | 2.63e-13 | 72.8 |
| MS.gene056606.t1 | AT4G28550 | 27.326 | 172 | 98 | 5 | 212 | 380 | 166 | 313 | 1.05e-12 | 69.7 |
| MS.gene056606.t1 | AT2G37290 | 25.000 | 232 | 133 | 6 | 155 | 383 | 317 | 510 | 1.26e-12 | 70.9 |
| MS.gene056606.t1 | AT2G37290 | 25.000 | 232 | 133 | 6 | 155 | 383 | 317 | 510 | 1.37e-12 | 70.9 |
| MS.gene056606.t1 | AT4G28550 | 27.907 | 172 | 97 | 5 | 212 | 380 | 166 | 313 | 1.56e-12 | 69.7 |
| MS.gene056606.t1 | AT2G20440 | 27.485 | 171 | 97 | 5 | 213 | 380 | 51 | 197 | 2.26e-12 | 68.2 |
| MS.gene056606.t1 | AT5G52580 | 24.901 | 253 | 156 | 7 | 140 | 381 | 364 | 593 | 3.50e-12 | 69.3 |
| MS.gene056606.t1 | AT5G52580 | 24.901 | 253 | 156 | 7 | 140 | 381 | 358 | 587 | 3.64e-12 | 69.3 |
| MS.gene056606.t1 | AT5G52580 | 24.901 | 253 | 156 | 7 | 140 | 381 | 375 | 604 | 3.96e-12 | 69.3 |
| MS.gene056606.t1 | AT4G28550 | 27.811 | 169 | 95 | 5 | 212 | 377 | 166 | 310 | 5.78e-12 | 67.4 |
| MS.gene056606.t1 | AT2G20440 | 27.485 | 171 | 97 | 5 | 213 | 380 | 167 | 313 | 8.05e-12 | 67.4 |
| MS.gene056606.t1 | AT2G20440 | 27.485 | 171 | 97 | 5 | 213 | 380 | 167 | 313 | 8.05e-12 | 67.4 |
| MS.gene056606.t1 | AT2G20440 | 26.531 | 196 | 109 | 7 | 213 | 405 | 167 | 330 | 2.28e-11 | 65.9 |
Find 116 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCTTCAATTTGCTTTC+CGG | 0.153454 | 4.3:-36761373 | MS.gene056606:CDS |
| AAGTTCAATAAGGTGCTTTC+TGG | 0.158641 | 4.3:-36764006 | MS.gene056606:CDS |
| GAATGCAATTCTAGCATTTA+TGG | 0.193109 | 4.3:-36760525 | MS.gene056606:CDS |
| CCCTCCTTTCTATCTGAATT+AGG | 0.240906 | 4.3:+36762924 | None:intergenic |
| TCTGGAACAGTGGTTATATT+AGG | 0.280287 | 4.3:-36763988 | MS.gene056606:intron |
| ACCTCGAGATGGTGCTTTCC+CGG | 0.286815 | 4.3:-36760232 | MS.gene056606:CDS |
| TCGTCTGAACGTTCTGAATC+TGG | 0.317488 | 4.3:+36762843 | None:intergenic |
| AAGAGGAGTCTCCACACTTT+AGG | 0.321748 | 4.3:+36763343 | None:intergenic |
| AAAACAAGCCTCTGAATTCC+AGG | 0.327397 | 4.3:+36761878 | None:intergenic |
| TTTATATCAGAACACTTAGA+AGG | 0.337221 | 4.3:-36762025 | MS.gene056606:CDS |
| ACTCAAGAGCTTGGAATTCC+AGG | 0.337608 | 4.3:-36760306 | MS.gene056606:CDS |
| AGATAGAAAGGAGGGAGTTC+TGG | 0.339166 | 4.3:-36762916 | MS.gene056606:CDS |
| TTTACCTTTCCAGTACATAT+TGG | 0.366195 | 4.3:-36760692 | MS.gene056606:CDS |
| TTGATCTCATCACACGCCTT+TGG | 0.368239 | 4.3:-36760898 | MS.gene056606:CDS |
| TATGTGCATGCACCTCGAAC+TGG | 0.369575 | 4.3:+36760473 | None:intergenic |
| TCCTCTATATGTTGTGAAAC+AGG | 0.369650 | 4.3:+36761407 | None:intergenic |
| TCCTGCTAGTGGATATGTTC+AGG | 0.373064 | 4.3:-36762083 | MS.gene056606:CDS |
| TGATCTCATCACACGCCTTT+GGG | 0.373855 | 4.3:-36760897 | MS.gene056606:CDS |
| TCTGCTCATCAATACTTTAC+CGG | 0.374779 | 4.3:+36764380 | None:intergenic |
| ACTTCTGAACTTGCTGTTGT+TGG | 0.386909 | 4.3:+36762668 | None:intergenic |
| AATATATACACAAGGAAGTC+TGG | 0.401217 | 4.3:+36760845 | None:intergenic |
| AGAGGAGTCTCCACACTTTA+GGG | 0.401637 | 4.3:+36763344 | None:intergenic |
| TCGTAGAGTCTGGCTGAATC+TGG | 0.401808 | 4.3:+36765232 | None:intergenic |
| ACTTTAGGGCGCATATAATC+TGG | 0.407268 | 4.3:+36763358 | None:intergenic |
| AACACCTTCCAACTCAGAAC+TGG | 0.415204 | 4.3:-36760265 | MS.gene056606:CDS |
| TGCGAACAAAACTGGAAATC+AGG | 0.416394 | 4.3:+36760655 | None:intergenic |
| GGTATACTTGTGGGTGTCTT+CGG | 0.417456 | 4.3:+36764065 | None:intergenic |
| GAATTGGTCAGGAGGATAGA+TGG | 0.417574 | 4.3:-36761845 | MS.gene056606:intron |
| GTAACGTCAGGTACAGTTCT+TGG | 0.418419 | 4.3:+36762697 | None:intergenic |
| TTAAATTGAAGGAATTGGTC+AGG | 0.419755 | 4.3:-36761856 | MS.gene056606:CDS |
| AAGAGTTACAAAGTTCAATA+AGG | 0.425239 | 4.3:-36764016 | MS.gene056606:CDS |
| GATAGAAAGGAGGGAGTTCT+GGG | 0.432601 | 4.3:-36762915 | MS.gene056606:CDS |
| TTCACAACATATAGAGGATC+AGG | 0.434173 | 4.3:-36761402 | MS.gene056606:CDS |
| GAACTGGGCGTAGACAATTA+AGG | 0.435076 | 4.3:+36760489 | None:intergenic |
| CTTGAACGTTTCGTAGAGTC+TGG | 0.447323 | 4.3:+36765222 | None:intergenic |
| GCTCACCGTGAGAAGGAAAC+TGG | 0.462813 | 4.3:+36760820 | None:intergenic |
| TGCTGTGCCACATAAATGCC+CGG | 0.464703 | 4.3:+36760213 | None:intergenic |
| TCTGAGTTGGAAGGTGTTGA+AGG | 0.469826 | 4.3:+36760270 | None:intergenic |
| TGGCGCTAGAGCTACGGATT+CGG | 0.472648 | 4.3:-36764040 | MS.gene056606:CDS |
| TGCTTTCCCGGGCATTTATG+TGG | 0.472854 | 4.3:-36760220 | MS.gene056606:CDS |
| TATCCTCAACATTCTACAAA+AGG | 0.477199 | 4.3:-36764323 | MS.gene056606:CDS |
| AATTGTCTACGCCCAGTTCG+AGG | 0.482002 | 4.3:-36760485 | MS.gene056606:intron |
| TGCCAACTCAGCTAGCGAAA+TGG | 0.482845 | 4.3:+36760171 | None:intergenic |
| ACAAATTGCGTGAATTAGCT+TGG | 0.484787 | 4.3:-36763390 | MS.gene056606:CDS |
| GCCTGTTTCACAACATATAG+AGG | 0.486010 | 4.3:-36761408 | MS.gene056606:CDS |
| GAGCTTGGAATTCCAGGAGT+TGG | 0.490575 | 4.3:-36760300 | MS.gene056606:CDS |
| CAGACTCTACGAAACGTTCA+AGG | 0.491397 | 4.3:-36765221 | MS.gene056606:CDS |
| GGCACAAGTGATCAGATATC+TGG | 0.493498 | 4.3:-36764279 | MS.gene056606:CDS |
| GTCAGACAAACTCAAGAGCT+TGG | 0.494238 | 4.3:-36760315 | MS.gene056606:CDS |
| CATTATCAGCCAATATGTAC+TGG | 0.494684 | 4.3:+36760683 | None:intergenic |
| CCTCGAGATGGTGCTTTCCC+GGG | 0.496826 | 4.3:-36760231 | MS.gene056606:CDS |
| CTGCTCATCAATACTTTACC+GGG | 0.500375 | 4.3:+36764381 | None:intergenic |
| CATTACACATTTGCTCAACC+TGG | 0.502850 | 4.3:-36761896 | MS.gene056606:CDS |
| CCTGCTAGTGGATATGTTCA+GGG | 0.504127 | 4.3:-36762082 | MS.gene056606:CDS |
| ACCACCTAATTCAGATAGAA+AGG | 0.505337 | 4.3:-36762928 | MS.gene056606:CDS |
| AGCGCCAATGGTATACTTGT+GGG | 0.505972 | 4.3:+36764056 | None:intergenic |
| ATGTAGAGGCTGATTGCTAC+TGG | 0.506715 | 4.3:-36761952 | MS.gene056606:CDS |
| TACCATTGGCGCTAGAGCTA+CGG | 0.513971 | 4.3:-36764046 | MS.gene056606:CDS |
| TAAGGTGCTTTCTGGAACAG+TGG | 0.515552 | 4.3:-36763998 | MS.gene056606:CDS |
| TAGCGCCAATGGTATACTTG+TGG | 0.516199 | 4.3:+36764055 | None:intergenic |
| ACAGCAAGTTCAGAAGTCAT+TGG | 0.516400 | 4.3:-36762662 | MS.gene056606:CDS |
| ATCCGTAGCTCTAGCGCCAA+TGG | 0.518827 | 4.3:+36764044 | None:intergenic |
| AAAGCACCATCTCGAGGTCC+TGG | 0.520492 | 4.3:+36760237 | None:intergenic |
| CTCAAAGGTCGTAGCATGCC+CGG | 0.521571 | 4.3:-36764399 | MS.gene056606:CDS |
| AGGCGTGTGATGAGATCAAA+TGG | 0.521736 | 4.3:+36760902 | None:intergenic |
| GAAGGAACATTACCAACTCC+TGG | 0.524180 | 4.3:+36760288 | None:intergenic |
| TGGTGAGTCCAGTTCTGAGT+TGG | 0.526407 | 4.3:+36760257 | None:intergenic |
| ACTCAGCTAGCGAAATGGCT+TGG | 0.527389 | 4.3:+36760176 | None:intergenic |
| TTTGAGTTCAAGTTATCAGA+AGG | 0.532747 | 4.3:+36764348 | None:intergenic |
| CCCTGAACATATCCACTAGC+AGG | 0.534785 | 4.3:+36762082 | None:intergenic |
| GAAAGGAGGGAGTTCTGGGA+AGG | 0.535564 | 4.3:-36762911 | MS.gene056606:CDS |
| TTATATCAGAACACTTAGAA+GGG | 0.537210 | 4.3:-36762024 | MS.gene056606:CDS |
| ATTTGCCAGTTTCCTTCTCA+CGG | 0.538122 | 4.3:-36760825 | MS.gene056606:intron |
| TCCTTTCTATCTGAATTAGG+TGG | 0.539605 | 4.3:+36762927 | None:intergenic |
| TGAGGTCAACATGCTTCGCC+AGG | 0.546292 | 4.3:-36762820 | MS.gene056606:intron |
| AACTCAGAACTGGACTCACC+AGG | 0.554419 | 4.3:-36760255 | MS.gene056606:CDS |
| TAAAGTGTGGAGACTCCTCT+TGG | 0.555773 | 4.3:-36763341 | MS.gene056606:intron |
| TTCTTCAATTTGCTTTCCGG+TGG | 0.556488 | 4.3:-36761370 | MS.gene056606:CDS |
| CAGGTTGAGCAAATGTGTAA+TGG | 0.558220 | 4.3:+36761897 | None:intergenic |
| ATGTGCATGCACCTCGAACT+GGG | 0.568623 | 4.3:+36760474 | None:intergenic |
| TCAGATATCTGGTGCAGTAG+AGG | 0.573878 | 4.3:-36764268 | MS.gene056606:intron |
| GGAGTTCTGGGAAGGAAGCG+CGG | 0.577143 | 4.3:-36762903 | MS.gene056606:CDS |
| AGTTTCTCACACAATGATGC+TGG | 0.578928 | 4.3:-36764300 | MS.gene056606:CDS |
| TTCTGATAACTTGAACTCAA+AGG | 0.581779 | 4.3:-36764346 | MS.gene056606:CDS |
| TTTAAATCAAGGTTGCTCAA+AGG | 0.582230 | 4.3:-36764414 | MS.gene056606:intron |
| TGTTGGAAGAATGTAACGTC+AGG | 0.582459 | 4.3:+36762685 | None:intergenic |
| TACAGTTCTTGGACAATCAA+CGG | 0.584447 | 4.3:+36762708 | None:intergenic |
| GACACCCACAAGTATACCAT+TGG | 0.584742 | 4.3:-36764060 | MS.gene056606:CDS |
| TGGAACGTATTCTTTATGCA+TGG | 0.587229 | 4.3:-36762642 | MS.gene056606:intron |
| GCAATTCGACATCCTGCTAG+TGG | 0.588975 | 4.3:-36762094 | MS.gene056606:CDS |
| TTGCTCAACCTGGAATTCAG+AGG | 0.589516 | 4.3:-36761886 | MS.gene056606:CDS |
| CCTAATTCAGATAGAAAGGA+GGG | 0.596459 | 4.3:-36762924 | MS.gene056606:CDS |
| TCAGCCAATATGTACTGGAA+AGG | 0.599065 | 4.3:+36760688 | None:intergenic |
| TCAAAAGACAGTTGAACCAC+CGG | 0.600802 | 4.3:+36761354 | None:intergenic |
| GTAAAGTATTGATGAGCAGA+AGG | 0.604241 | 4.3:-36764377 | MS.gene056606:CDS |
| TAAGCTAGCTCACCGTGAGA+AGG | 0.605423 | 4.3:+36760813 | None:intergenic |
| GACTCACCAGGACCTCGAGA+TGG | 0.605820 | 4.3:-36760243 | MS.gene056606:CDS |
| ATTATATGCGCCCTAAAGTG+TGG | 0.607591 | 4.3:-36763354 | MS.gene056606:CDS |
| AATTGAAGGAATTGGTCAGG+AGG | 0.609370 | 4.3:-36761853 | MS.gene056606:CDS |
| AGACAAAATCTCTAATGTAG+AGG | 0.611644 | 4.3:-36761966 | MS.gene056606:CDS |
| TGGGACACATATCTAGCTGA+AGG | 0.612669 | 4.3:-36760878 | MS.gene056606:CDS |
| ACCTAATTCAGATAGAAAGG+AGG | 0.625011 | 4.3:-36762925 | MS.gene056606:CDS |
| TATATCAGAACACTTAGAAG+GGG | 0.625153 | 4.3:-36762023 | MS.gene056606:CDS |
| CAGCTAGATATGTGTCCCAA+AGG | 0.627022 | 4.3:+36760882 | None:intergenic |
| GCTGTGCCACATAAATGCCC+GGG | 0.632407 | 4.3:+36760214 | None:intergenic |
| GAGTCCAGTTCTGAGTTGGA+AGG | 0.640965 | 4.3:+36760261 | None:intergenic |
| ATATCAGAACACTTAGAAGG+GGG | 0.643161 | 4.3:-36762022 | MS.gene056606:CDS |
| CCCGGGAAAGCACCATCTCG+AGG | 0.648223 | 4.3:+36760231 | None:intergenic |
| TCACAACATATAGAGGATCA+GGG | 0.651098 | 4.3:-36761401 | MS.gene056606:CDS |
| TGTTTGTCGAAGTTGCTCGA+CGG | 0.654377 | 4.3:-36761929 | MS.gene056606:CDS |
| TTCAGAACGTTCAGACGATG+AGG | 0.654756 | 4.3:-36762838 | MS.gene056606:CDS |
| ATACACAAGGAAGTCTGGCA+AGG | 0.657164 | 4.3:+36760850 | None:intergenic |
| CTGCTAGTGGATATGTTCAG+GGG | 0.660606 | 4.3:-36762081 | MS.gene056606:CDS |
| AGACTCTACGAAACGTTCAA+GGG | 0.665190 | 4.3:-36765220 | MS.gene056606:intron |
| AACTGGCAAATATATACACA+AGG | 0.671598 | 4.3:+36760837 | None:intergenic |
| TTGCGTGAATTAGCTTGGAG+TGG | 0.688224 | 4.3:-36763385 | MS.gene056606:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATTATTTTAGTGAAA+AGG | + | chr4.3:36764694-36764713 | None:intergenic | 10.0% |
| !!! | ATTTATTTCTTTATTTAATC+TGG | - | chr4.3:36761695-36761714 | MS.gene056606:intron | 10.0% |
| !! | AAGATATAGGAATAATAATA+TGG | + | chr4.3:36763994-36764013 | None:intergenic | 15.0% |
| !! | AGATTATATTTCAAAGATAT+AGG | + | chr4.3:36764007-36764026 | None:intergenic | 15.0% |
| !! | ATAACTAATTTCAACTTATA+TGG | + | chr4.3:36764296-36764315 | None:intergenic | 15.0% |
| !! | GATATAAAAACAACTAAAAA+CGG | + | chr4.3:36763438-36763457 | None:intergenic | 15.0% |
| !!! | AACATATACAAGATTAATTT+TGG | - | chr4.3:36764359-36764378 | MS.gene056606:CDS | 15.0% |
| !!! | AATTTTTCAATTTTTTGTCA+GGG | - | chr4.3:36763359-36763378 | MS.gene056606:CDS | 15.0% |
| !!! | TAATTTTTCAATTTTTTGTC+AGG | - | chr4.3:36763358-36763377 | MS.gene056606:CDS | 15.0% |
| !!! | TATATATATTTTTCCTTTAG+TGG | - | chr4.3:36765138-36765157 | MS.gene056606:intron | 15.0% |
| !!! | TGAAGACTTAAAAATTATTT+TGG | + | chr4.3:36760908-36760927 | None:intergenic | 15.0% |
| !! | AAGGTAAAATGATTAATGTT+TGG | - | chr4.3:36760755-36760774 | MS.gene056606:intron | 20.0% |
| !! | AATGAATGAATCTAATAAAG+AGG | + | chr4.3:36760414-36760433 | None:intergenic | 20.0% |
| !! | ACAGTTAAAATAGATAAAAG+AGG | + | chr4.3:36761823-36761842 | None:intergenic | 20.0% |
| !! | ATGAATGAATCTAATAAAGA+GGG | + | chr4.3:36760413-36760432 | None:intergenic | 20.0% |
| !! | CAGTTAAAATAGATAAAAGA+GGG | + | chr4.3:36761822-36761841 | None:intergenic | 20.0% |
| !! | CAGTTTATCTTTAAATTTCA+AGG | + | chr4.3:36762512-36762531 | None:intergenic | 20.0% |
| !! | GAATTGAATTATAAGAATGA+TGG | + | chr4.3:36760320-36760339 | None:intergenic | 20.0% |
| !! | GTTATATAGAAAATCCTTAA+GGG | - | chr4.3:36762434-36762453 | MS.gene056606:intron | 20.0% |
| !! | TAAATTGTGATTGTTATGAT+GGG | + | chr4.3:36761778-36761797 | None:intergenic | 20.0% |
| !! | TATAAAGGAAAAAATTGTCA+GGG | + | chr4.3:36764160-36764179 | None:intergenic | 20.0% |
| !! | TCAAATTAACCTACTTATAA+AGG | + | chr4.3:36764175-36764194 | None:intergenic | 20.0% |
| !! | TCTCAATTAAAATAAGTGTA+TGG | + | chr4.3:36764395-36764414 | None:intergenic | 20.0% |
| !! | TGTTATATAGAAAATCCTTA+AGG | - | chr4.3:36762433-36762452 | MS.gene056606:intron | 20.0% |
| !! | TTAAATTGTGATTGTTATGA+TGG | + | chr4.3:36761779-36761798 | None:intergenic | 20.0% |
| !! | TTATAAAGGAAAAAATTGTC+AGG | + | chr4.3:36764161-36764180 | None:intergenic | 20.0% |
| !! | TTATATAGAAAATCCTTAAG+GGG | - | chr4.3:36762435-36762454 | MS.gene056606:intron | 20.0% |
| !! | TTTATGTTCTCTTTAAATCA+AGG | - | chr4.3:36761050-36761069 | MS.gene056606:intron | 20.0% |
| !!! | AGTATCTCAAATTATTTCTA+AGG | - | chr4.3:36761642-36761661 | MS.gene056606:intron | 20.0% |
| !!! | ATATACAAGATTAATTTTGG+AGG | - | chr4.3:36764362-36764381 | MS.gene056606:CDS | 20.0% |
| !!! | ATATTTTTTTGCCCATTTAT+TGG | - | chr4.3:36762860-36762879 | MS.gene056606:CDS | 20.0% |
| !!! | CAATTTTTTCCTTTATAAGT+AGG | - | chr4.3:36764163-36764182 | MS.gene056606:intron | 20.0% |
| !!! | CTTTTGCTATTTAAGATAAA+TGG | - | chr4.3:36764864-36764883 | MS.gene056606:intron | 20.0% |
| !!! | TCTAGTTTAAAATGAGTTTA+AGG | - | chr4.3:36760736-36760755 | MS.gene056606:intron | 20.0% |
| !!! | TGTTTTTAAATTGAAGGAAT+TGG | - | chr4.3:36763614-36763633 | MS.gene056606:intron | 20.0% |
| !!! | TTCAATTTTCCTATGTATTT+GGG | - | chr4.3:36761526-36761545 | MS.gene056606:intron | 20.0% |
| !!! | TTCTTTATTTAATCTGGATT+TGG | - | chr4.3:36761701-36761720 | MS.gene056606:intron | 20.0% |
| !!! | TTTAAGTTTTTAAGAGAAGT+AGG | - | chr4.3:36762257-36762276 | MS.gene056606:intron | 20.0% |
| ! | AAATTGTGATTGTTATGATG+GGG | + | chr4.3:36761777-36761796 | None:intergenic | 25.0% |
| ! | AACACTAGACTAAGAATATT+GGG | + | chr4.3:36762887-36762906 | None:intergenic | 25.0% |
| ! | AAGAGTTACAAAGTTCAATA+AGG | - | chr4.3:36761459-36761478 | MS.gene056606:intron | 25.0% |
| ! | AATATCATAAATTGTGAGCA+AGG | + | chr4.3:36761954-36761973 | None:intergenic | 25.0% |
| ! | AATTGTGTATCTTTAACCAA+TGG | + | chr4.3:36763931-36763950 | None:intergenic | 25.0% |
| ! | ACAAAATGTTGTCTATAAGA+AGG | + | chr4.3:36762486-36762505 | None:intergenic | 25.0% |
| ! | ACAACTACAATAATCAGATA+TGG | + | chr4.3:36761584-36761603 | None:intergenic | 25.0% |
| ! | ACAGTATTTAAAAAGCAAGT+AGG | + | chr4.3:36763131-36763150 | None:intergenic | 25.0% |
| ! | ATAATCAGATATGGTCATTT+AGG | + | chr4.3:36761575-36761594 | None:intergenic | 25.0% |
| ! | ATTCTTATCTTGATTGTTTG+TGG | - | chr4.3:36762696-36762715 | MS.gene056606:CDS | 25.0% |
| ! | CAAAAAATATCAATAGGCTA+AGG | + | chr4.3:36761894-36761913 | None:intergenic | 25.0% |
| ! | GTATGAAATCCATATATAGA+TGG | + | chr4.3:36763725-36763744 | None:intergenic | 25.0% |
| ! | TACAAATCCTAACTTTAAGT+TGG | - | chr4.3:36760832-36760851 | MS.gene056606:CDS | 25.0% |
| ! | TCATATGAAGCATGATAATA+AGG | - | chr4.3:36762220-36762239 | MS.gene056606:intron | 25.0% |
| ! | TGAAAACTTGAGAATAGAAA+TGG | + | chr4.3:36763747-36763766 | None:intergenic | 25.0% |
| ! | TTAAAGATAAACTGACAACA+GGG | - | chr4.3:36762518-36762537 | MS.gene056606:intron | 25.0% |
| ! | TTATATCAGAACACTTAGAA+GGG | - | chr4.3:36763451-36763470 | MS.gene056606:intron | 25.0% |
| ! | TTTAAAGATAAACTGACAAC+AGG | - | chr4.3:36762517-36762536 | MS.gene056606:intron | 25.0% |
| ! | TTTATATCAGAACACTTAGA+AGG | - | chr4.3:36763450-36763469 | MS.gene056606:intron | 25.0% |
| !! | AAATCAAACCATTTCTAGAA+AGG | + | chr4.3:36763330-36763349 | None:intergenic | 25.0% |
| !! | AAGAGATTTTCTTTTGTATC+GGG | - | chr4.3:36764893-36764912 | MS.gene056606:intron | 25.0% |
| !! | AAGGATGAAATATTTTACAC+TGG | + | chr4.3:36762041-36762060 | None:intergenic | 25.0% |
| !! | AATTTCTTCAATTTGCTTTC+CGG | - | chr4.3:36764102-36764121 | MS.gene056606:CDS | 25.0% |
| !! | ACAAATCCTAACTTTAAGTT+GGG | - | chr4.3:36760833-36760852 | MS.gene056606:CDS | 25.0% |
| !! | ATGAAATATTTTACACTGGT+AGG | + | chr4.3:36762037-36762056 | None:intergenic | 25.0% |
| !! | ATGTTTCTATAAGTTTGATG+TGG | - | chr4.3:36761264-36761283 | MS.gene056606:intron | 25.0% |
| !! | ATTGATTTATGCTCTTACTA+AGG | - | chr4.3:36764524-36764543 | MS.gene056606:intron | 25.0% |
| !! | CTTCAATTTTCCTATGTATT+TGG | - | chr4.3:36761525-36761544 | MS.gene056606:intron | 25.0% |
| !! | GAAGAGATTTTCTTTTGTAT+CGG | - | chr4.3:36764892-36764911 | MS.gene056606:intron | 25.0% |
| !! | GAATTATAAGAATGATGGAA+TGG | + | chr4.3:36760315-36760334 | None:intergenic | 25.0% |
| !! | TAAGGCAAAATCTCAATTTT+GGG | + | chr4.3:36760584-36760603 | None:intergenic | 25.0% |
| !! | TCATCATCTTATTTATCCAT+TGG | - | chr4.3:36763912-36763931 | MS.gene056606:intron | 25.0% |
| !! | TTAAGGCAAAATCTCAATTT+TGG | + | chr4.3:36760585-36760604 | None:intergenic | 25.0% |
| !!! | AAATTATTTTGGTATGTCTG+CGG | + | chr4.3:36760897-36760916 | None:intergenic | 25.0% |
| !!! | ATTCAGTTTCTAGTTTCTAT+GGG | + | chr4.3:36765117-36765136 | None:intergenic | 25.0% |
| !!! | CATAAAAGTTTTGTTCATTG+AGG | - | chr4.3:36762307-36762326 | MS.gene056606:intron | 25.0% |
| !!! | CTTAGCCTATTGATATTTTT+TGG | - | chr4.3:36761892-36761911 | MS.gene056606:CDS | 25.0% |
| !!! | TCAAATTGATTCGCATAATT+AGG | - | chr4.3:36760376-36760395 | MS.gene056606:intron | 25.0% |
| AAATCCATATATAGATGGTG+AGG | + | chr4.3:36763720-36763739 | None:intergenic | 30.0% | |
| AACTGGCAAATATATACACA+AGG | + | chr4.3:36764641-36764660 | None:intergenic | 30.0% | |
| AAGTTGTTCTTGAGAAAGAT+AGG | + | chr4.3:36764449-36764468 | None:intergenic | 30.0% | |
| AATATATACACAAGGAAGTC+TGG | + | chr4.3:36764633-36764652 | None:intergenic | 30.0% | |
| AATCATTGTCATACCAGTAA+TGG | + | chr4.3:36763052-36763071 | None:intergenic | 30.0% | |
| AATTCATATGTACCAGTTCA+CGG | + | chr4.3:36763238-36763257 | None:intergenic | 30.0% | |
| ACACTAGACTAAGAATATTG+GGG | + | chr4.3:36762886-36762905 | None:intergenic | 30.0% | |
| ACTTCTATTCTTAATACAGG+AGG | - | chr4.3:36761306-36761325 | MS.gene056606:intron | 30.0% | |
| AGACAAAATCTCTAATGTAG+AGG | - | chr4.3:36763509-36763528 | MS.gene056606:intron | 30.0% | |
| AGTTGTTCTTGAGAAAGATA+GGG | + | chr4.3:36764448-36764467 | None:intergenic | 30.0% | |
| ATACTAACAAACCCTAATAC+TGG | + | chr4.3:36762987-36763006 | None:intergenic | 30.0% | |
| ATTCAATTGTCAACTGTGTA+TGG | - | chr4.3:36763255-36763274 | MS.gene056606:intron | 30.0% | |
| CTATGCATCATATGTTATAC+CGG | - | chr4.3:36763080-36763099 | MS.gene056606:intron | 30.0% | |
| CTTGTAAGAGAATAATTCCA+TGG | + | chr4.3:36762338-36762357 | None:intergenic | 30.0% | |
| CTTGTTGCAAAACATTTATG+TGG | + | chr4.3:36762376-36762395 | None:intergenic | 30.0% | |
| GAAATTATAGCAATGCTTGA+AGG | + | chr4.3:36763684-36763703 | None:intergenic | 30.0% | |
| GAACACTAGACTAAGAATAT+TGG | + | chr4.3:36762888-36762907 | None:intergenic | 30.0% | |
| GAAGCTAGATAGATTTCTTA+AGG | + | chr4.3:36760602-36760621 | None:intergenic | 30.0% | |
| GAATCAATTTGAATAAGCAG+CGG | + | chr4.3:36760368-36760387 | None:intergenic | 30.0% | |
| GAATGCAATTCTAGCATTTA+TGG | - | chr4.3:36764950-36764969 | MS.gene056606:intron | 30.0% | |
| GAGACTTCTATTCTTAATAC+AGG | - | chr4.3:36761303-36761322 | MS.gene056606:intron | 30.0% | |
| GCAATCTAACAAACATACAA+TGG | + | chr4.3:36762748-36762767 | None:intergenic | 30.0% | |
| TAAGAATAGAAGTCTCTTCT+AGG | + | chr4.3:36761299-36761318 | None:intergenic | 30.0% | |
| TACTAACAAACCCTAATACT+GGG | + | chr4.3:36762986-36763005 | None:intergenic | 30.0% | |
| TACTAAGATGTTAAGCCTTA+TGG | - | chr4.3:36761998-36762017 | MS.gene056606:CDS | 30.0% | |
| TACTGTACTTAATCTAGTAC+TGG | - | chr4.3:36763145-36763164 | MS.gene056606:intron | 30.0% | |
| TATATCAGAACACTTAGAAG+GGG | - | chr4.3:36763452-36763471 | MS.gene056606:intron | 30.0% | |
| TATCCTCAACATTCTACAAA+AGG | - | chr4.3:36761152-36761171 | MS.gene056606:intron | 30.0% | |
| TGCTGCCAAAAAATATCAAT+AGG | + | chr4.3:36761900-36761919 | None:intergenic | 30.0% | |
| TTAAATTGAAGGAATTGGTC+AGG | - | chr4.3:36763619-36763638 | MS.gene056606:intron | 30.0% | |
| TTAATTAGTTAGACCCCTTA+AGG | + | chr4.3:36762451-36762470 | None:intergenic | 30.0% | |
| TTCTGATAACTTGAACTCAA+AGG | - | chr4.3:36761129-36761148 | MS.gene056606:intron | 30.0% | |
| TTTAAATCAAGGTTGCTCAA+AGG | - | chr4.3:36761061-36761080 | MS.gene056606:intron | 30.0% | |
| TTTACCTTTCCAGTACATAT+TGG | - | chr4.3:36764783-36764802 | MS.gene056606:intron | 30.0% | |
| ! | AAAGTGTCTGAATGGTAAAA+TGG | - | chr4.3:36764485-36764504 | MS.gene056606:intron | 30.0% |
| ! | CTGTCATGGATAATTTTCTT+AGG | - | chr4.3:36762909-36762928 | MS.gene056606:CDS | 30.0% |
| ! | GTTTTACGTTCAATTCACTT+TGG | + | chr4.3:36760792-36760811 | None:intergenic | 30.0% |
| ! | GTTTTGCAACAAGATTATGA+GGG | - | chr4.3:36762383-36762402 | MS.gene056606:intron | 30.0% |
| ! | TGTCTATAAGAAGGTATGAT+GGG | + | chr4.3:36762477-36762496 | None:intergenic | 30.0% |
| ! | TGTTTTGCAACAAGATTATG+AGG | - | chr4.3:36762382-36762401 | MS.gene056606:intron | 30.0% |
| ! | TTGTCTATAAGAAGGTATGA+TGG | + | chr4.3:36762478-36762497 | None:intergenic | 30.0% |
| ! | TTTGAGTTCAAGTTATCAGA+AGG | + | chr4.3:36761130-36761149 | None:intergenic | 30.0% |
| !! | CATTCAGTTTCTAGTTTCTA+TGG | + | chr4.3:36765118-36765137 | None:intergenic | 30.0% |
| !! | TGTTTTATTGCGAACAAAAC+TGG | + | chr4.3:36764831-36764850 | None:intergenic | 30.0% |
| !!! | ATTGATATTTTTTGGCAGCA+AGG | - | chr4.3:36761900-36761919 | MS.gene056606:CDS | 30.0% |
| !!! | GAGGCTTGTTTTTAAATTGA+AGG | - | chr4.3:36763608-36763627 | MS.gene056606:intron | 30.0% |
| !!! | TTATACCGGTTTTAGAAGAT+GGG | - | chr4.3:36763094-36763113 | MS.gene056606:intron | 30.0% |
| AAGTTAGGATTTGTAGTCTG+TGG | + | chr4.3:36760827-36760846 | None:intergenic | 35.0% | |
| AATGCCTCACCATCTATATA+TGG | - | chr4.3:36763713-36763732 | MS.gene056606:intron | 35.0% | |
| ACAAATTGCGTGAATTAGCT+TGG | - | chr4.3:36762085-36762104 | MS.gene056606:CDS | 35.0% | |
| ACCACCTAATTCAGATAGAA+AGG | - | chr4.3:36762547-36762566 | MS.gene056606:intron | 35.0% | |
| ACCTAATTCAGATAGAAAGG+AGG | - | chr4.3:36762550-36762569 | MS.gene056606:intron | 35.0% | |
| ACCTGATATGTATCCATTAC+TGG | - | chr4.3:36763036-36763055 | MS.gene056606:intron | 35.0% | |
| ACTAACAAACCCTAATACTG+GGG | + | chr4.3:36762985-36763004 | None:intergenic | 35.0% | |
| ACTGATCCCAACTTAAAGTT+AGG | + | chr4.3:36760842-36760861 | None:intergenic | 35.0% | |
| AGAATATTGGGGCCAATAAA+TGG | + | chr4.3:36762875-36762894 | None:intergenic | 35.0% | |
| ATATCAGAACACTTAGAAGG+GGG | - | chr4.3:36763453-36763472 | MS.gene056606:intron | 35.0% | |
| ATATGGATGTCAAACTGTCA+AGG | + | chr4.3:36762060-36762079 | None:intergenic | 35.0% | |
| ATGGTCATTTAGGAGTAACA+AGG | + | chr4.3:36761565-36761584 | None:intergenic | 35.0% | |
| CAACCATACAAAATACAGCA+GGG | + | chr4.3:36765051-36765070 | None:intergenic | 35.0% | |
| CACGCAATTTGTCTACAATA+TGG | + | chr4.3:36762077-36762096 | None:intergenic | 35.0% | |
| CATTATCAGCCAATATGTAC+TGG | + | chr4.3:36764795-36764814 | None:intergenic | 35.0% | |
| CCTAATTCAGATAGAAAGGA+GGG | - | chr4.3:36762551-36762570 | MS.gene056606:intron | 35.0% | |
| GAATATTGGGGCCAATAAAT+GGG | + | chr4.3:36762874-36762893 | None:intergenic | 35.0% | |
| GGAAAAAAGAAATTCTCGAC+AGG | + | chr4.3:36765030-36765049 | None:intergenic | 35.0% | |
| GGCAAAAATAGGTTTCCATA+AGG | + | chr4.3:36762016-36762035 | None:intergenic | 35.0% | |
| TAAAAATCTCAACCTCCCTT+GGG | - | chr4.3:36761377-36761396 | MS.gene056606:CDS | 35.0% | |
| TAATGAGCAATAACACTGTC+TGG | + | chr4.3:36763185-36763204 | None:intergenic | 35.0% | |
| TACAGTTCTTGGACAATCAA+CGG | + | chr4.3:36762770-36762789 | None:intergenic | 35.0% | |
| TACTGGTATGACAATGATTC+AGG | - | chr4.3:36763053-36763072 | MS.gene056606:intron | 35.0% | |
| TCACAACATATAGAGGATCA+GGG | - | chr4.3:36764074-36764093 | MS.gene056606:CDS | 35.0% | |
| TCCTCTATATGTTGTGAAAC+AGG | + | chr4.3:36764071-36764090 | None:intergenic | 35.0% | |
| TCCTTTCTATCTGAATTAGG+TGG | + | chr4.3:36762551-36762570 | None:intergenic | 35.0% | |
| TCTATTCTTAATACAGGAGG+AGG | - | chr4.3:36761309-36761328 | MS.gene056606:intron | 35.0% | |
| TCTGCTCATCAATACTTTAC+CGG | + | chr4.3:36761098-36761117 | None:intergenic | 35.0% | |
| TGGAACGTATTCTTTATGCA+TGG | - | chr4.3:36762833-36762852 | MS.gene056606:CDS | 35.0% | |
| TTAAAAATCTCAACCTCCCT+TGG | - | chr4.3:36761376-36761395 | MS.gene056606:CDS | 35.0% | |
| TTAAACTCAGTGAGTGTGTT+TGG | - | chr4.3:36760678-36760697 | MS.gene056606:CDS | 35.0% | |
| TTACACTGGTAGGCAAAAAT+AGG | + | chr4.3:36762027-36762046 | None:intergenic | 35.0% | |
| TTCACAACATATAGAGGATC+AGG | - | chr4.3:36764073-36764092 | MS.gene056606:CDS | 35.0% | |
| TTCTTGAGAAAGATAGGGTT+TGG | + | chr4.3:36764443-36764462 | None:intergenic | 35.0% | |
| ! | AAGTTCAATAAGGTGCTTTC+TGG | - | chr4.3:36761469-36761488 | MS.gene056606:intron | 35.0% |
| ! | ACTCCTTTTGTAGAATGTTG+AGG | + | chr4.3:36761158-36761177 | None:intergenic | 35.0% |
| ! | ATGGTACTGAATGATACTCT+TGG | - | chr4.3:36763274-36763293 | MS.gene056606:intron | 35.0% |
| ! | CACGTATTCCTTTCTAGAAA+TGG | - | chr4.3:36763319-36763338 | MS.gene056606:intron | 35.0% |
| ! | TAGGTTAATTTGAGTCAGCT+TGG | - | chr4.3:36764182-36764201 | MS.gene056606:intron | 35.0% |
| ! | TCTGGAACAGTGGTTATATT+AGG | - | chr4.3:36761487-36761506 | MS.gene056606:intron | 35.0% |
| ! | TTACGTTCATGATTTTCTCG+TGG | + | chr4.3:36760197-36760216 | None:intergenic | 35.0% |
| ! | TTTCCCTGCTGTATTTTGTA+TGG | - | chr4.3:36765045-36765064 | MS.gene056606:intron | 35.0% |
| !! | ACCAGTAATGGATACATATC+AGG | + | chr4.3:36763040-36763059 | None:intergenic | 35.0% |
| !! | ATATTAGAGCTCTGAATACC+TGG | + | chr4.3:36762676-36762695 | None:intergenic | 35.0% |
| !! | GTAAAGTATTGATGAGCAGA+AGG | - | chr4.3:36761098-36761117 | MS.gene056606:intron | 35.0% |
| !!! | ACACTGTCTGGTAACTTTTT+TGG | + | chr4.3:36763173-36763192 | None:intergenic | 35.0% |
| !!! | GTTATACCGGTTTTAGAAGA+TGG | - | chr4.3:36763093-36763112 | MS.gene056606:intron | 35.0% |
| AAAAATCTCAACCTCCCTTG+GGG | - | chr4.3:36761378-36761397 | MS.gene056606:CDS | 40.0% | |
| AAAACAAGCCTCTGAATTCC+AGG | + | chr4.3:36763600-36763619 | None:intergenic | 40.0% | |
| AAAGATGACTCTTAGCTGCT+TGG | - | chr4.3:36762934-36762953 | MS.gene056606:CDS | 40.0% | |
| AAGTCTTCAGAATCACTTCG+AGG | - | chr4.3:36760919-36760938 | MS.gene056606:intron | 40.0% | |
| AATTGAAGGAATTGGTCAGG+AGG | - | chr4.3:36763622-36763641 | MS.gene056606:intron | 40.0% | |
| ACAGCAAGTTCAGAAGTCAT+TGG | - | chr4.3:36762813-36762832 | MS.gene056606:intron | 40.0% | |
| AGACTCTACGAAACGTTCAA+GGG | - | chr4.3:36760255-36760274 | MS.gene056606:CDS | 40.0% | |
| AGGCTAAGGCAACAATAATG+CGG | + | chr4.3:36761880-36761899 | None:intergenic | 40.0% | |
| AGTGCGAGCAAAATAGAAGA+AGG | + | chr4.3:36762173-36762192 | None:intergenic | 40.0% | |
| AGTTTCTCACACAATGATGC+TGG | - | chr4.3:36761175-36761194 | MS.gene056606:intron | 40.0% | |
| ATATGTACCAGTTCACGGAA+AGG | + | chr4.3:36763233-36763252 | None:intergenic | 40.0% | |
| ATATGTTGTGAAACAGGCTC+TGG | + | chr4.3:36764065-36764084 | None:intergenic | 40.0% | |
| ATTATATGCGCCCTAAAGTG+TGG | - | chr4.3:36762121-36762140 | MS.gene056606:intron | 40.0% | |
| ATTTGCCAGTTTCCTTCTCA+CGG | - | chr4.3:36764650-36764669 | MS.gene056606:intron | 40.0% | |
| CATTACACATTTGCTCAACC+TGG | - | chr4.3:36763579-36763598 | MS.gene056606:intron | 40.0% | |
| CCCTCCTTTCTATCTGAATT+AGG | + | chr4.3:36762554-36762573 | None:intergenic | 40.0% | |
| CGCAGTTCAAAAGTTTCAAC+AGG | + | chr4.3:36764042-36764061 | None:intergenic | 40.0% | |
| CTCTTGGTGAATCTTAGAAG+AGG | - | chr4.3:36763290-36763309 | MS.gene056606:intron | 40.0% | |
| CTGCTCATCAATACTTTACC+GGG | + | chr4.3:36761097-36761116 | None:intergenic | 40.0% | |
| GCAACCATACAAAATACAGC+AGG | + | chr4.3:36765052-36765071 | None:intergenic | 40.0% | |
| GCCTGTTTCACAACATATAG+AGG | - | chr4.3:36764067-36764086 | MS.gene056606:CDS | 40.0% | |
| TAGTCTAGTGTTCTCTGTCA+TGG | - | chr4.3:36762895-36762914 | MS.gene056606:CDS | 40.0% | |
| TATATCTCCTTTCCGTGAAC+TGG | - | chr4.3:36763223-36763242 | MS.gene056606:intron | 40.0% | |
| TATCAGGTACCAGTATCTAG+CGG | + | chr4.3:36763024-36763043 | None:intergenic | 40.0% | |
| TCAAAAGACAGTTGAACCAC+CGG | + | chr4.3:36764124-36764143 | None:intergenic | 40.0% | |
| TCAGCCAATATGTACTGGAA+AGG | + | chr4.3:36764790-36764809 | None:intergenic | 40.0% | |
| TCAGCTACGACTTGAATCTT+GGG | - | chr4.3:36760494-36760513 | MS.gene056606:CDS | 40.0% | |
| TGAGTTTGTCTGACCACTAA+AGG | + | chr4.3:36765154-36765173 | None:intergenic | 40.0% | |
| TGCGAACAAAACTGGAAATC+AGG | + | chr4.3:36764823-36764842 | None:intergenic | 40.0% | |
| TGTTCAGGAATGGTACTTGT+TGG | - | chr4.3:36764742-36764761 | MS.gene056606:intron | 40.0% | |
| TGTTGGAAGAATGTAACGTC+AGG | + | chr4.3:36762793-36762812 | None:intergenic | 40.0% | |
| TTCAGCTACGACTTGAATCT+TGG | - | chr4.3:36760493-36760512 | MS.gene056606:CDS | 40.0% | |
| ! | CAGGTTGAGCAAATGTGTAA+TGG | + | chr4.3:36763581-36763600 | None:intergenic | 40.0% |
| ! | CTATAAGAAGGTATGATGGG+AGG | + | chr4.3:36762474-36762493 | None:intergenic | 40.0% |
| ! | TAGAAGGGGGTATAGATGAT+TGG | - | chr4.3:36763466-36763485 | MS.gene056606:intron | 40.0% |
| ! | TTCGGATAAGTTTTCCCCAA+GGG | + | chr4.3:36761395-36761414 | None:intergenic | 40.0% |
| ! | TTCTTCAATTTGCTTTCCGG+TGG | - | chr4.3:36764105-36764124 | MS.gene056606:CDS | 40.0% |
| ! | TTGTGATTGTTATGATGGGG+CGG | + | chr4.3:36761774-36761793 | None:intergenic | 40.0% |
| !! | AAAGTTTCCAGAAGCACTTG+TGG | - | chr4.3:36764207-36764226 | MS.gene056606:intron | 40.0% |
| !! | ACTTCTGAACTTGCTGTTGT+TGG | + | chr4.3:36762810-36762829 | None:intergenic | 40.0% |
| !! | ACTTTAGGGCGCATATAATC+TGG | + | chr4.3:36762120-36762139 | None:intergenic | 40.0% |
| !! | GAAGTCCCATCTTCTAAAAC+CGG | + | chr4.3:36763102-36763121 | None:intergenic | 40.0% |
| !!! | AGATGGTACGCTTTTTTCTC+AGG | - | chr4.3:36763647-36763666 | MS.gene056606:intron | 40.0% |
| AACACCTTCCAACTCAGAAC+TGG | - | chr4.3:36765210-36765229 | MS.gene056606:intron | 45.0% | |
| AAGAGGAGTCTCCACACTTT+AGG | + | chr4.3:36762135-36762154 | None:intergenic | 45.0% | |
| ACTCAAGAGCTTGGAATTCC+AGG | - | chr4.3:36765169-36765188 | MS.gene056606:intron | 45.0% | |
| ACTCCTCTTGGTAAGCTCTA+TGG | - | chr4.3:36762146-36762165 | MS.gene056606:intron | 45.0% | |
| AGAGGAGTCTCCACACTTTA+GGG | + | chr4.3:36762134-36762153 | None:intergenic | 45.0% | |
| AGATAGAAAGGAGGGAGTTC+TGG | - | chr4.3:36762559-36762578 | MS.gene056606:intron | 45.0% | |
| AGCACAACTTCCCCAGTATT+AGG | - | chr4.3:36762972-36762991 | MS.gene056606:intron | 45.0% | |
| AGCGCCAATGGTATACTTGT+GGG | + | chr4.3:36761422-36761441 | None:intergenic | 45.0% | |
| AGGCGTGTGATGAGATCAAA+TGG | + | chr4.3:36764576-36764595 | None:intergenic | 45.0% | |
| ATACACAAGGAAGTCTGGCA+AGG | + | chr4.3:36764628-36764647 | None:intergenic | 45.0% | |
| ATCAGGTACCAGTATCTAGC+GGG | + | chr4.3:36763023-36763042 | None:intergenic | 45.0% | |
| ATGTAGAGGCTGATTGCTAC+TGG | - | chr4.3:36763523-36763542 | MS.gene056606:intron | 45.0% | |
| ATTGTGTACCCGCTAGATAC+TGG | - | chr4.3:36763012-36763031 | MS.gene056606:intron | 45.0% | |
| CAGACTCTACGAAACGTTCA+AGG | - | chr4.3:36760254-36760273 | MS.gene056606:CDS | 45.0% | |
| CAGCTAGATATGTGTCCCAA+AGG | + | chr4.3:36764596-36764615 | None:intergenic | 45.0% | |
| CATTCCTGAACAGCAAGACT+AGG | + | chr4.3:36764734-36764753 | None:intergenic | 45.0% | |
| CATTTATGTGGCCAGCATCA+AGG | + | chr4.3:36762364-36762383 | None:intergenic | 45.0% | |
| CTTACAAGAGACCTTGATGC+TGG | - | chr4.3:36762350-36762369 | MS.gene056606:intron | 45.0% | |
| CTTGAACGTTTCGTAGAGTC+TGG | + | chr4.3:36760256-36760275 | None:intergenic | 45.0% | |
| GAACTGGGCGTAGACAATTA+AGG | + | chr4.3:36764989-36765008 | None:intergenic | 45.0% | |
| GAAGGAACATTACCAACTCC+TGG | + | chr4.3:36765190-36765209 | None:intergenic | 45.0% | |
| GAATTGGTCAGGAGGATAGA+TGG | - | chr4.3:36763630-36763649 | MS.gene056606:intron | 45.0% | |
| GACACCCACAAGTATACCAT+TGG | - | chr4.3:36761415-36761434 | MS.gene056606:intron | 45.0% | |
| GACGATCAGCCCAAATACAT+AGG | + | chr4.3:36761538-36761557 | None:intergenic | 45.0% | |
| GAGAACTAGACACACACACT+CGG | - | chr4.3:36761009-36761028 | MS.gene056606:intron | 45.0% | |
| GATAGAAAGGAGGGAGTTCT+GGG | - | chr4.3:36762560-36762579 | MS.gene056606:intron | 45.0% | |
| GCACAACTTCCCCAGTATTA+GGG | - | chr4.3:36762973-36762992 | MS.gene056606:intron | 45.0% | |
| GGCACAAGTGATCAGATATC+TGG | - | chr4.3:36761196-36761215 | MS.gene056606:intron | 45.0% | |
| GGCTAAGGCAACAATAATGC+GGG | + | chr4.3:36761879-36761898 | None:intergenic | 45.0% | |
| GGTATACTTGTGGGTGTCTT+CGG | + | chr4.3:36761413-36761432 | None:intergenic | 45.0% | |
| GTAACGTCAGGTACAGTTCT+TGG | + | chr4.3:36762781-36762800 | None:intergenic | 45.0% | |
| GTCAGACAAACTCAAGAGCT+TGG | - | chr4.3:36765160-36765179 | MS.gene056606:intron | 45.0% | |
| TAAAGTGTGGAGACTCCTCT+TGG | - | chr4.3:36762134-36762153 | MS.gene056606:intron | 45.0% | |
| TAGCGCCAATGGTATACTTG+TGG | + | chr4.3:36761423-36761442 | None:intergenic | 45.0% | |
| TCAGATATCTGGTGCAGTAG+AGG | - | chr4.3:36761207-36761226 | MS.gene056606:intron | 45.0% | |
| TGATCTCATCACACGCCTTT+GGG | - | chr4.3:36764578-36764597 | MS.gene056606:intron | 45.0% | |
| TGGGACACATATCTAGCTGA+AGG | - | chr4.3:36764597-36764616 | MS.gene056606:intron | 45.0% | |
| TGTTTGTCGAAGTTGCTCGA+CGG | - | chr4.3:36763546-36763565 | MS.gene056606:intron | 45.0% | |
| TTCAGAACGTTCAGACGATG+AGG | - | chr4.3:36762637-36762656 | MS.gene056606:intron | 45.0% | |
| TTGATCTCATCACACGCCTT+TGG | - | chr4.3:36764577-36764596 | MS.gene056606:intron | 45.0% | |
| TTGCTCAACCTGGAATTCAG+AGG | - | chr4.3:36763589-36763608 | MS.gene056606:intron | 45.0% | |
| ! | AGTATCTAGCGGGTACACAA+TGG | + | chr4.3:36763013-36763032 | None:intergenic | 45.0% |
| ! | CCTGCTAGTGGATATGTTCA+GGG | - | chr4.3:36763393-36763412 | MS.gene056606:CDS | 45.0% |
| ! | CGTTCATGATTTTCTCGTGG+AGG | + | chr4.3:36760194-36760213 | None:intergenic | 45.0% |
| ! | CTGCTAGTGGATATGTTCAG+GGG | - | chr4.3:36763394-36763413 | MS.gene056606:intron | 45.0% |
| ! | CTTCGGATAAGTTTTCCCCA+AGG | + | chr4.3:36761396-36761415 | None:intergenic | 45.0% |
| ! | TCCTGCTAGTGGATATGTTC+AGG | - | chr4.3:36763392-36763411 | MS.gene056606:CDS | 45.0% |
| ! | TCGTCTGAACGTTCTGAATC+TGG | + | chr4.3:36762635-36762654 | None:intergenic | 45.0% |
| ! | TCGTTTTCCACAAGTGCTTC+TGG | + | chr4.3:36764217-36764236 | None:intergenic | 45.0% |
| ! | TTGCGTGAATTAGCTTGGAG+TGG | - | chr4.3:36762090-36762109 | MS.gene056606:CDS | 45.0% |
| !! | ATCTCCTAGTCTTGCTGTTC+AGG | - | chr4.3:36764727-36764746 | MS.gene056606:intron | 45.0% |
| !! | CTAGTCTTGCTGTTCAGGAA+TGG | - | chr4.3:36764732-36764751 | MS.gene056606:intron | 45.0% |
| !! | TAAGGTGCTTTCTGGAACAG+TGG | - | chr4.3:36761477-36761496 | MS.gene056606:intron | 45.0% |
| !! | TCTGAGTTGGAAGGTGTTGA+AGG | + | chr4.3:36765208-36765227 | None:intergenic | 45.0% |
| AACTCAGAACTGGACTCACC+AGG | - | chr4.3:36765220-36765239 | MS.gene056606:intron | 50.0% | |
| AATTGTCAGGGCAAACCTCG+CGG | + | chr4.3:36764148-36764167 | None:intergenic | 50.0% | |
| AATTGTCTACGCCCAGTTCG+AGG | - | chr4.3:36764990-36765009 | MS.gene056606:intron | 50.0% | |
| ACTCTCCAAGCCATTTCGCT+AGG | - | chr4.3:36765294-36765313 | MS.gene056606:CDS | 50.0% | |
| ATGTGCATGCACCTCGAACT+GGG | + | chr4.3:36765004-36765023 | None:intergenic | 50.0% | |
| CCCTGAACATATCCACTAGC+AGG | + | chr4.3:36763396-36763415 | None:intergenic | 50.0% | |
| GAGCTTGGAATTCCAGGAGT+TGG | - | chr4.3:36765175-36765194 | MS.gene056606:intron | 50.0% | |
| GCAATTCGACATCCTGCTAG+TGG | - | chr4.3:36763381-36763400 | MS.gene056606:CDS | 50.0% | |
| GGTCCATAGAGCTTACCAAG+AGG | + | chr4.3:36762152-36762171 | None:intergenic | 50.0% | |
| TAAGCTAGCTCACCGTGAGA+AGG | + | chr4.3:36764665-36764684 | None:intergenic | 50.0% | |
| TACCATTGGCGCTAGAGCTA+CGG | - | chr4.3:36761429-36761448 | MS.gene056606:intron | 50.0% | |
| TATGTGCATGCACCTCGAAC+TGG | + | chr4.3:36765005-36765024 | None:intergenic | 50.0% | |
| TCGTAGAGTCTGGCTGAATC+TGG | + | chr4.3:36760246-36760265 | None:intergenic | 50.0% | |
| TGCTGTGCCACATAAATGCC+CGG | + | chr4.3:36765265-36765284 | None:intergenic | 50.0% | |
| TGCTTTCCCGGGCATTTATG+TGG | - | chr4.3:36765255-36765274 | MS.gene056606:CDS | 50.0% | |
| TGTTCATTGAGGCTGAGCCA+TGG | - | chr4.3:36762318-36762337 | MS.gene056606:intron | 50.0% | |
| ! | CAACTGTCTTTTGATCCGCG+AGG | - | chr4.3:36764130-36764149 | MS.gene056606:CDS | 50.0% |
| ! | CACGGTGAGCTAGCTTACTT+TGG | - | chr4.3:36764668-36764687 | MS.gene056606:intron | 50.0% |
| ! | GGATAAGTTTTCCCCAAGGG+AGG | + | chr4.3:36761392-36761411 | None:intergenic | 50.0% |
| ! | GTTATGATGGGGCGGTGATA+TGG | + | chr4.3:36761766-36761785 | None:intergenic | 50.0% |
| !! | GAGTCCAGTTCTGAGTTGGA+AGG | + | chr4.3:36765217-36765236 | None:intergenic | 50.0% |
| !! | TGAGTGTGTTTGGCTCTGTG+CGG | - | chr4.3:36760688-36760707 | MS.gene056606:CDS | 50.0% |
| !! | TGGTGAGTCCAGTTCTGAGT+TGG | + | chr4.3:36765221-36765240 | None:intergenic | 50.0% |
| ACCTCGAGATGGTGCTTTCC+CGG | - | chr4.3:36765243-36765262 | MS.gene056606:CDS | 55.0% | |
| CTCAAAGGTCGTAGCATGCC+CGG | - | chr4.3:36761076-36761095 | MS.gene056606:intron | 55.0% | |
| GCTCACCGTGAGAAGGAAAC+TGG | + | chr4.3:36764658-36764677 | None:intergenic | 55.0% | |
| GCTGTGCCACATAAATGCCC+GGG | + | chr4.3:36765264-36765283 | None:intergenic | 55.0% | |
| GGCGGTGATATGGAAGACTG+CGG | + | chr4.3:36761756-36761775 | None:intergenic | 55.0% | |
| TGAGGTCAACATGCTTCGCC+AGG | - | chr4.3:36762655-36762674 | MS.gene056606:CDS | 55.0% | |
| TGGCGCTAGAGCTACGGATT+CGG | - | chr4.3:36761435-36761454 | MS.gene056606:intron | 55.0% | |
| ! | AAAGCACCATCTCGAGGTCC+TGG | + | chr4.3:36765241-36765260 | None:intergenic | 55.0% |
| !! | ATCCGTAGCTCTAGCGCCAA+TGG | + | chr4.3:36761434-36761453 | None:intergenic | 55.0% |
| !! | GAAAGGAGGGAGTTCTGGGA+AGG | - | chr4.3:36762564-36762583 | MS.gene056606:intron | 55.0% |
| CCTCGAGATGGTGCTTTCCC+GGG | - | chr4.3:36765244-36765263 | MS.gene056606:CDS | 60.0% | |
| GACTCACCAGGACCTCGAGA+TGG | - | chr4.3:36765232-36765251 | MS.gene056606:CDS | 60.0% | |
| !! | GGAGTTCTGGGAAGGAAGCG+CGG | - | chr4.3:36762572-36762591 | MS.gene056606:intron | 60.0% |
| !! | CCCGGGAAAGCACCATCTCG+AGG | + | chr4.3:36765247-36765266 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 36760182 | 36765315 | 36760182 | ID=MS.gene056606 |
| chr4.3 | mRNA | 36760182 | 36765315 | 36760182 | ID=MS.gene056606.t1;Parent=MS.gene056606 |
| chr4.3 | exon | 36765221 | 36765315 | 36765221 | ID=MS.gene056606.t1.exon1;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36765221 | 36765315 | 36765221 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36764269 | 36764425 | 36764269 | ID=MS.gene056606.t1.exon2;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36764269 | 36764425 | 36764269 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36763989 | 36764172 | 36763989 | ID=MS.gene056606.t1.exon3;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36763989 | 36764172 | 36763989 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36763342 | 36763412 | 36763342 | ID=MS.gene056606.t1.exon4;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36763342 | 36763412 | 36763342 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36762821 | 36762958 | 36762821 | ID=MS.gene056606.t1.exon5;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36762821 | 36762958 | 36762821 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36762643 | 36762734 | 36762643 | ID=MS.gene056606.t1.exon6;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36762643 | 36762734 | 36762643 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36761846 | 36762117 | 36761846 | ID=MS.gene056606.t1.exon7;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36761846 | 36762117 | 36761846 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36761346 | 36761431 | 36761346 | ID=MS.gene056606.t1.exon8;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36761346 | 36761431 | 36761346 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36760826 | 36760927 | 36760826 | ID=MS.gene056606.t1.exon9;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36760826 | 36760927 | 36760826 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36760667 | 36760716 | 36760667 | ID=MS.gene056606.t1.exon10;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36760667 | 36760716 | 36760667 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36760486 | 36760559 | 36760486 | ID=MS.gene056606.t1.exon11;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36760486 | 36760559 | 36760486 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| chr4.3 | exon | 36760182 | 36760339 | 36760182 | ID=MS.gene056606.t1.exon12;Parent=MS.gene056606.t1 |
| chr4.3 | CDS | 36760182 | 36760339 | 36760182 | ID=cds.MS.gene056606.t1;Parent=MS.gene056606.t1 |
| Gene Sequence |
| Protein sequence |
