Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056683.t1 | KEH30418.1 | 94.6 | 354 | 19 | 0 | 1 | 354 | 1 | 354 | 1.70E-192 | 681.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056683.t1 | Q9LN62 | 68.4 | 358 | 106 | 3 | 1 | 352 | 71 | 427 | 3.9e-137 | 489.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056683.t1 | A0A072UN11 | 94.6 | 354 | 19 | 0 | 1 | 354 | 1 | 354 | 1.2e-192 | 681.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056683 | MS.gene45703 | 0.979309 | 1.09E-147 | -1.69E-46 |
| MS.gene056683 | MS.gene50058 | 0.843204 | 1.62E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056683.t1 | MTR_4g069390 | 94.633 | 354 | 19 | 0 | 1 | 354 | 1 | 354 | 0.0 | 701 |
| MS.gene056683.t1 | MTR_4g069420 | 89.076 | 357 | 34 | 1 | 3 | 354 | 73 | 429 | 0.0 | 659 |
| MS.gene056683.t1 | MTR_4g069350 | 88.418 | 354 | 39 | 1 | 1 | 354 | 80 | 431 | 0.0 | 642 |
| MS.gene056683.t1 | MTR_4g069300 | 83.193 | 357 | 55 | 1 | 1 | 352 | 80 | 436 | 0.0 | 615 |
| MS.gene056683.t1 | MTR_4g069260 | 80.392 | 357 | 64 | 2 | 1 | 352 | 80 | 435 | 0.0 | 598 |
| MS.gene056683.t1 | MTR_4g069430 | 87.611 | 339 | 42 | 0 | 15 | 353 | 83 | 421 | 0.0 | 595 |
| MS.gene056683.t1 | MTR_1g022025 | 72.543 | 346 | 90 | 1 | 12 | 352 | 82 | 427 | 0.0 | 530 |
| MS.gene056683.t1 | MTR_8g069400 | 29.557 | 203 | 119 | 8 | 71 | 267 | 1378 | 1562 | 1.40e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056683.t1 | AT1G19360 | 68.436 | 358 | 106 | 3 | 1 | 352 | 71 | 427 | 4.72e-180 | 506 |
| MS.gene056683.t1 | AT1G19360 | 68.436 | 358 | 106 | 3 | 1 | 352 | 71 | 427 | 4.72e-180 | 506 |
| MS.gene056683.t1 | AT1G75110 | 67.227 | 357 | 111 | 3 | 1 | 352 | 72 | 427 | 2.69e-179 | 504 |
| MS.gene056683.t1 | AT1G75120 | 65.909 | 352 | 112 | 3 | 1 | 352 | 59 | 402 | 1.84e-170 | 481 |
| MS.gene056683.t1 | AT1G70630 | 28.230 | 209 | 122 | 7 | 71 | 271 | 230 | 418 | 3.90e-14 | 73.9 |
| MS.gene056683.t1 | AT1G70630 | 28.230 | 209 | 122 | 7 | 71 | 271 | 446 | 634 | 4.93e-14 | 73.9 |
| MS.gene056683.t1 | AT1G70630 | 28.230 | 209 | 122 | 7 | 71 | 271 | 398 | 586 | 5.36e-14 | 73.6 |
| MS.gene056683.t1 | AT1G70630 | 28.230 | 209 | 122 | 7 | 71 | 271 | 261 | 449 | 5.47e-14 | 73.6 |
| MS.gene056683.t1 | AT1G70630 | 28.230 | 209 | 122 | 7 | 71 | 271 | 261 | 449 | 5.47e-14 | 73.6 |
| MS.gene056683.t1 | AT1G70630 | 28.230 | 209 | 122 | 7 | 71 | 271 | 477 | 665 | 5.60e-14 | 73.6 |
| MS.gene056683.t1 | AT1G70630 | 28.230 | 209 | 122 | 7 | 71 | 271 | 467 | 655 | 5.87e-14 | 73.6 |
Find 75 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGGTCTCTTTGGTAAAA+TGG | 0.133685 | 4.3:-35962845 | None:intergenic |
| CATCCCTTCAATTGAGCTTT+TGG | 0.214785 | 4.3:+35963180 | MS.gene056683:CDS |
| ATTGTTGAATATTATGTTAA+TGG | 0.251603 | 4.3:+35963451 | MS.gene056683:CDS |
| TAAGGCAACAACTAGATAAT+TGG | 0.263932 | 4.3:-35962783 | None:intergenic |
| CATAATAACATGACAGCTTA+TGG | 0.285401 | 4.3:+35963055 | MS.gene056683:CDS |
| CCTCTTTAATTGATGCAATA+TGG | 0.293872 | 4.3:-35962562 | None:intergenic |
| AACCAATATCCGGGTCTCTT+TGG | 0.310972 | 4.3:-35962853 | None:intergenic |
| TACCAAAGAGACCCGGATAT+TGG | 0.327747 | 4.3:+35962851 | MS.gene056683:CDS |
| CTTTGCAATCTCATCATCTA+AGG | 0.332611 | 4.3:-35962801 | None:intergenic |
| TTGTTGAATATTATGTTAAT+GGG | 0.345028 | 4.3:+35963452 | MS.gene056683:CDS |
| TCATGCTGCTAAAAGAACTA+TGG | 0.353213 | 4.3:+35963300 | MS.gene056683:CDS |
| TCTAATAAATTTGCCAATCT+CGG | 0.356388 | 4.3:-35962659 | None:intergenic |
| TATACCAACTCTCTTGATAT+TGG | 0.362843 | 4.3:-35962759 | None:intergenic |
| TAATTCAAGTGAATAATTAC+CGG | 0.395451 | 4.3:-35963397 | None:intergenic |
| CTAATAAATTTGCCAATCTC+GGG | 0.411225 | 4.3:-35962658 | None:intergenic |
| TGAATTCTTGAACCCGAGAT+TGG | 0.422149 | 4.3:+35962646 | MS.gene056683:CDS |
| CCGGGTCTCTTTGGTAAAAT+GGG | 0.423186 | 4.3:-35962844 | None:intergenic |
| AATTCATCAGGAGCAACATT+AGG | 0.424750 | 4.3:-35962629 | None:intergenic |
| TGATCATCTATACCGTGATT+CGG | 0.426234 | 4.3:+35963009 | MS.gene056683:CDS |
| GGGAAATGACGGAAAGGCTT+CGG | 0.439869 | 4.3:+35962519 | MS.gene056683:CDS |
| CATGTTAAAATCAGAATTTG+TGG | 0.440337 | 4.3:+35962454 | None:intergenic |
| ACAGTGTCAAAACCAATATC+CGG | 0.445951 | 4.3:-35962863 | None:intergenic |
| AGGATATTTGTTTACAATTG+TGG | 0.453481 | 4.3:+35963136 | MS.gene056683:CDS |
| CTCGGGTTCAAGAATTCATC+AGG | 0.455431 | 4.3:-35962641 | None:intergenic |
| CGAGGTGTACCATTGGGAAA+AGG | 0.456748 | 4.3:-35963493 | None:intergenic |
| CTCTTTCATCCATCACATCC+TGG | 0.487595 | 4.3:+35963265 | MS.gene056683:CDS |
| TAATCTCAGTAAATTGAAAC+CGG | 0.490101 | 4.3:+35963378 | MS.gene056683:CDS |
| AGCTCAATTGAAGGGATGGT+TGG | 0.490489 | 4.3:-35963175 | None:intergenic |
| CCTTCACATTTGAGTTTGCA+AGG | 0.492258 | 4.3:-35962715 | None:intergenic |
| TGAAGGAAATGCTCGAGGTC+TGG | 0.494327 | 4.3:+35962732 | MS.gene056683:CDS |
| GTCTTCGAAGACCCTGGGAT+GGG | 0.503992 | 4.3:+35963088 | MS.gene056683:CDS |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4.3:-35963004 | None:intergenic |
| AGGCTTCGGCTTGCAGAGCA+AGG | 0.512498 | 4.3:+35962533 | MS.gene056683:CDS |
| CGGTCCAAAAGCTCAATTGA+AGG | 0.514640 | 4.3:-35963184 | None:intergenic |
| CCACTAGACCAACCCATCCC+AGG | 0.518389 | 4.3:-35963100 | None:intergenic |
| CCATATTGCATCAATTAAAG+AGG | 0.518667 | 4.3:+35962562 | MS.gene056683:CDS |
| ATTACCACCGTGATAAGCTT+CGG | 0.519971 | 4.3:+35963416 | MS.gene056683:CDS |
| AACGATGTCTTCGAAGACCC+TGG | 0.520201 | 4.3:+35963082 | MS.gene056683:CDS |
| CCATCACATCCTGGTTATGA+CGG | 0.520532 | 4.3:+35963274 | MS.gene056683:CDS |
| CCTGGGATGGGTTGGTCTAG+TGG | 0.521581 | 4.3:+35963100 | MS.gene056683:CDS |
| GTTATTATGACCATCGCTCA+TGG | 0.530943 | 4.3:-35963041 | None:intergenic |
| GGTTATCGAGGTGTACCATT+GGG | 0.536774 | 4.3:-35963499 | None:intergenic |
| ATTGTAAACAAATATCCTCC+TGG | 0.543398 | 4.3:-35963131 | None:intergenic |
| ATCAGGAGCAACATTAGGAC+TGG | 0.543690 | 4.3:-35962624 | None:intergenic |
| TCGAAGACCCTGGGATGGGT+TGG | 0.544120 | 4.3:+35963092 | MS.gene056683:CDS |
| CAAAAGCTCAATTGAAGGGA+TGG | 0.548256 | 4.3:-35963179 | None:intergenic |
| GCATGAAGCCCGTCATAACC+AGG | 0.559070 | 4.3:-35963283 | None:intergenic |
| TCATTCGCCGAAGCTTATCA+CGG | 0.559537 | 4.3:-35963423 | None:intergenic |
| CATCACATCCTGGTTATGAC+GGG | 0.559997 | 4.3:+35963275 | MS.gene056683:CDS |
| GAAAAGGTTTGAGAGCGTCT+TGG | 0.567598 | 4.3:-35963477 | None:intergenic |
| AAAACAGTTGAGGGAAATGA+CGG | 0.571564 | 4.3:+35962508 | MS.gene056683:CDS |
| CTTCACATTTGAGTTTGCAA+GGG | 0.571821 | 4.3:-35962714 | None:intergenic |
| TCGAAAGTCGTGCTGCCACA+CGG | 0.575082 | 4.3:-35963204 | None:intergenic |
| CACTAGACCAACCCATCCCA+GGG | 0.582249 | 4.3:-35963099 | None:intergenic |
| CCTTGCAAACTCAAATGTGA+AGG | 0.591600 | 4.3:+35962715 | MS.gene056683:CDS |
| CAGTGTCAAAACCAATATCC+GGG | 0.592081 | 4.3:-35962862 | None:intergenic |
| ATTGCCTTGACAGTACCAAA+AGG | 0.592822 | 4.3:-35962596 | None:intergenic |
| TTCACCAATATCAAGAGAGT+TGG | 0.596908 | 4.3:+35962755 | MS.gene056683:CDS |
| AGGTTATCGAGGTGTACCAT+TGG | 0.601144 | 4.3:-35963500 | None:intergenic |
| TGTCTTCGAAGACCCTGGGA+TGG | 0.601932 | 4.3:+35963087 | MS.gene056683:CDS |
| ACGATGTCTTCGAAGACCCT+GGG | 0.602485 | 4.3:+35963083 | MS.gene056683:CDS |
| CCGTCATAACCAGGATGTGA+TGG | 0.606127 | 4.3:-35963274 | None:intergenic |
| GTTCCTCGTTGAAAACGACT+TGG | 0.612096 | 4.3:-35963243 | None:intergenic |
| TGTGGCAGCACGACTTTCGA+AGG | 0.620454 | 4.3:+35963207 | MS.gene056683:CDS |
| GGTCCAAAAGCTCAATTGAA+GGG | 0.628652 | 4.3:-35963183 | None:intergenic |
| GATGTTGAGTCCATGAGCGA+TGG | 0.629878 | 4.3:+35963031 | MS.gene056683:CDS |
| TGGACTCAACATCCGAATCA+CGG | 0.631798 | 4.3:-35963021 | None:intergenic |
| GGCTTCGGCTTGCAGAGCAA+GGG | 0.638726 | 4.3:+35962534 | MS.gene056683:CDS |
| AGTTGAGGGAAATGACGGAA+AGG | 0.639933 | 4.3:+35962513 | MS.gene056683:CDS |
| TAGAATACGAAATTTAAGCG+TGG | 0.644770 | 4.3:-35962915 | None:intergenic |
| AAATGTGAAGGAAATGCTCG+AGG | 0.650279 | 4.3:+35962727 | MS.gene056683:CDS |
| GAGATTAGCATCATTCCTCA+CGG | 0.654966 | 4.3:-35963362 | None:intergenic |
| GAAAATCGCAGTTAAACGAG+AGG | 0.662166 | 4.3:+35962682 | MS.gene056683:CDS |
| ACACAGAAACAAGGTTATCG+AGG | 0.668454 | 4.3:-35963511 | None:intergenic |
| TTCGCCGAAGCTTATCACGG+TGG | 0.734041 | 4.3:-35963420 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTTGAATATTATGTTAA+TGG | + | chr4.3:35963451-35963470 | MS.gene056683:CDS | 15.0% |
| !! | TTGTTGAATATTATGTTAAT+GGG | + | chr4.3:35963452-35963471 | MS.gene056683:CDS | 15.0% |
| !! | TAATTCAAGTGAATAATTAC+CGG | - | chr4.3:35963400-35963419 | None:intergenic | 20.0% |
| ! | AGGATATTTGTTTACAATTG+TGG | + | chr4.3:35963136-35963155 | MS.gene056683:CDS | 25.0% |
| ! | TAATCTCAGTAAATTGAAAC+CGG | + | chr4.3:35963378-35963397 | MS.gene056683:CDS | 25.0% |
| ! | TCTAATAAATTTGCCAATCT+CGG | - | chr4.3:35962662-35962681 | None:intergenic | 25.0% |
| ACTGTTGGAAAAATTGCAAA+CGG | + | chr4.3:35962881-35962900 | MS.gene056683:CDS | 30.0% | |
| AGAGCTAAAAAAACAGTTGA+GGG | + | chr4.3:35962499-35962518 | MS.gene056683:CDS | 30.0% | |
| ATTGTAAACAAATATCCTCC+TGG | - | chr4.3:35963134-35963153 | None:intergenic | 30.0% | |
| CATAATAACATGACAGCTTA+TGG | + | chr4.3:35963055-35963074 | MS.gene056683:CDS | 30.0% | |
| CCATATTGCATCAATTAAAG+AGG | + | chr4.3:35962562-35962581 | MS.gene056683:CDS | 30.0% | |
| CCTCTTTAATTGATGCAATA+TGG | - | chr4.3:35962565-35962584 | None:intergenic | 30.0% | |
| CTAATAAATTTGCCAATCTC+GGG | - | chr4.3:35962661-35962680 | None:intergenic | 30.0% | |
| TAAGGCAACAACTAGATAAT+TGG | - | chr4.3:35962786-35962805 | None:intergenic | 30.0% | |
| TAGAATACGAAATTTAAGCG+TGG | - | chr4.3:35962918-35962937 | None:intergenic | 30.0% | |
| TATACCAACTCTCTTGATAT+TGG | - | chr4.3:35962762-35962781 | None:intergenic | 30.0% | |
| TCAATTAAAGAGGAAAAAGC+TGG | + | chr4.3:35962572-35962591 | MS.gene056683:CDS | 30.0% | |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | + | chr4.3:35962935-35962954 | MS.gene056683:CDS | 30.0% |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | + | chr4.3:35962934-35962953 | MS.gene056683:CDS | 30.0% |
| AAAACAGTTGAGGGAAATGA+CGG | + | chr4.3:35962508-35962527 | MS.gene056683:CDS | 35.0% | |
| AATTCATCAGGAGCAACATT+AGG | - | chr4.3:35962632-35962651 | None:intergenic | 35.0% | |
| ACAGTGTCAAAACCAATATC+CGG | - | chr4.3:35962866-35962885 | None:intergenic | 35.0% | |
| CAGAGCTAAAAAAACAGTTG+AGG | + | chr4.3:35962498-35962517 | MS.gene056683:CDS | 35.0% | |
| CTTTGCAATCTCATCATCTA+AGG | - | chr4.3:35962804-35962823 | None:intergenic | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | - | chr4.3:35963007-35963026 | None:intergenic | 35.0% | |
| TCATGCTGCTAAAAGAACTA+TGG | + | chr4.3:35963300-35963319 | MS.gene056683:CDS | 35.0% | |
| TGATCATCTATACCGTGATT+CGG | + | chr4.3:35963009-35963028 | MS.gene056683:CDS | 35.0% | |
| TTCACCAATATCAAGAGAGT+TGG | + | chr4.3:35962755-35962774 | MS.gene056683:CDS | 35.0% | |
| ! | ACTTTCGAAGGAAAAAGCAT+GGG | + | chr4.3:35963219-35963238 | MS.gene056683:CDS | 35.0% |
| ! | CTTCACATTTGAGTTTGCAA+GGG | - | chr4.3:35962717-35962736 | None:intergenic | 35.0% |
| !!! | GATATTGGTTTTGACACTGT+TGG | + | chr4.3:35962866-35962885 | MS.gene056683:CDS | 35.0% |
| AAATGTGAAGGAAATGCTCG+AGG | + | chr4.3:35962727-35962746 | MS.gene056683:CDS | 40.0% | |
| ATTACCACCGTGATAAGCTT+CGG | + | chr4.3:35963416-35963435 | MS.gene056683:CDS | 40.0% | |
| ATTGCCTTGACAGTACCAAA+AGG | - | chr4.3:35962599-35962618 | None:intergenic | 40.0% | |
| CAAAAGCTCAATTGAAGGGA+TGG | - | chr4.3:35963182-35963201 | None:intergenic | 40.0% | |
| CAGTGTCAAAACCAATATCC+GGG | - | chr4.3:35962865-35962884 | None:intergenic | 40.0% | |
| CCTTGCAAACTCAAATGTGA+AGG | + | chr4.3:35962715-35962734 | MS.gene056683:CDS | 40.0% | |
| GAAAATCGCAGTTAAACGAG+AGG | + | chr4.3:35962682-35962701 | MS.gene056683:CDS | 40.0% | |
| GACTTTCGAAGGAAAAAGCA+TGG | + | chr4.3:35963218-35963237 | MS.gene056683:CDS | 40.0% | |
| GAGATTAGCATCATTCCTCA+CGG | - | chr4.3:35963365-35963384 | None:intergenic | 40.0% | |
| GGTCCAAAAGCTCAATTGAA+GGG | - | chr4.3:35963186-35963205 | None:intergenic | 40.0% | |
| GTTATTATGACCATCGCTCA+TGG | - | chr4.3:35963044-35963063 | None:intergenic | 40.0% | |
| TGAATTCTTGAACCCGAGAT+TGG | + | chr4.3:35962646-35962665 | MS.gene056683:CDS | 40.0% | |
| ! | CATCCCTTCAATTGAGCTTT+TGG | + | chr4.3:35963180-35963199 | MS.gene056683:CDS | 40.0% |
| ! | CCTTCACATTTGAGTTTGCA+AGG | - | chr4.3:35962718-35962737 | None:intergenic | 40.0% |
| AACCAATATCCGGGTCTCTT+TGG | - | chr4.3:35962856-35962875 | None:intergenic | 45.0% | |
| AGCTCAATTGAAGGGATGGT+TGG | - | chr4.3:35963178-35963197 | None:intergenic | 45.0% | |
| ATCAGGAGCAACATTAGGAC+TGG | - | chr4.3:35962627-35962646 | None:intergenic | 45.0% | |
| CATCACATCCTGGTTATGAC+GGG | + | chr4.3:35963275-35963294 | MS.gene056683:CDS | 45.0% | |
| CCATCACATCCTGGTTATGA+CGG | + | chr4.3:35963274-35963293 | MS.gene056683:CDS | 45.0% | |
| CCGGGTCTCTTTGGTAAAAT+GGG | - | chr4.3:35962847-35962866 | None:intergenic | 45.0% | |
| CGGTCCAAAAGCTCAATTGA+AGG | - | chr4.3:35963187-35963206 | None:intergenic | 45.0% | |
| CTCGGGTTCAAGAATTCATC+AGG | - | chr4.3:35962644-35962663 | None:intergenic | 45.0% | |
| CTCTTTCATCCATCACATCC+TGG | + | chr4.3:35963265-35963284 | MS.gene056683:CDS | 45.0% | |
| GTTCCTCGTTGAAAACGACT+TGG | - | chr4.3:35963246-35963265 | None:intergenic | 45.0% | |
| TACCAAAGAGACCCGGATAT+TGG | + | chr4.3:35962851-35962870 | MS.gene056683:CDS | 45.0% | |
| TCATTCGCCGAAGCTTATCA+CGG | - | chr4.3:35963426-35963445 | None:intergenic | 45.0% | |
| TCCGGGTCTCTTTGGTAAAA+TGG | - | chr4.3:35962848-35962867 | None:intergenic | 45.0% | |
| TGGAAAAATTGCAAACGGCG+CGG | + | chr4.3:35962886-35962905 | MS.gene056683:CDS | 45.0% | |
| TGGACTCAACATCCGAATCA+CGG | - | chr4.3:35963024-35963043 | None:intergenic | 45.0% | |
| ! | AATTGAGCTTTTGGACCGTG+TGG | + | chr4.3:35963189-35963208 | MS.gene056683:CDS | 45.0% |
| ! | AGTTGAGGGAAATGACGGAA+AGG | + | chr4.3:35962513-35962532 | MS.gene056683:CDS | 45.0% |
| ! | CCCATTTTACCAAAGAGACC+CGG | + | chr4.3:35962844-35962863 | MS.gene056683:CDS | 45.0% |
| ! | GAGGAAAAAGCTGGACCTTT+TGG | + | chr4.3:35962581-35962600 | MS.gene056683:CDS | 45.0% |
| ! | GCTCTCAAACCTTTTCCCAA+TGG | + | chr4.3:35963484-35963503 | MS.gene056683:CDS | 45.0% |
| ! | TGGACCTTTTGGTACTGTCA+AGG | + | chr4.3:35962592-35962611 | MS.gene056683:CDS | 45.0% |
| !! | GAAAAGGTTTGAGAGCGTCT+TGG | - | chr4.3:35963480-35963499 | None:intergenic | 45.0% |
| !! | GAGTTCTTTTCAAGACCGTG+AGG | + | chr4.3:35963347-35963366 | MS.gene056683:CDS | 45.0% |
| AACGATGTCTTCGAAGACCC+TGG | + | chr4.3:35963082-35963101 | MS.gene056683:CDS | 50.0% | |
| ACGATGTCTTCGAAGACCCT+GGG | + | chr4.3:35963083-35963102 | MS.gene056683:CDS | 50.0% | |
| CCGTCATAACCAGGATGTGA+TGG | - | chr4.3:35963277-35963296 | None:intergenic | 50.0% | |
| CGAGGTGTACCATTGGGAAA+AGG | - | chr4.3:35963496-35963515 | None:intergenic | 50.0% | |
| GATGTTGAGTCCATGAGCGA+TGG | + | chr4.3:35963031-35963050 | MS.gene056683:CDS | 50.0% | |
| TGAAGGAAATGCTCGAGGTC+TGG | + | chr4.3:35962732-35962751 | MS.gene056683:CDS | 50.0% | |
| ! | CTAGTGGCGTTTTTACCAGG+AGG | + | chr4.3:35963116-35963135 | MS.gene056683:CDS | 50.0% |
| ! | GGGAAATGACGGAAAGGCTT+CGG | + | chr4.3:35962519-35962538 | MS.gene056683:CDS | 50.0% |
| ! | GGTCTAGTGGCGTTTTTACC+AGG | + | chr4.3:35963113-35963132 | MS.gene056683:CDS | 50.0% |
| !! | GGACCAAGTCGTTTTCAACG+AGG | + | chr4.3:35963240-35963259 | MS.gene056683:CDS | 50.0% |
| CACTAGACCAACCCATCCCA+GGG | - | chr4.3:35963102-35963121 | None:intergenic | 55.0% | |
| GCATGAAGCCCGTCATAACC+AGG | - | chr4.3:35963286-35963305 | None:intergenic | 55.0% | |
| GTCTTCGAAGACCCTGGGAT+GGG | + | chr4.3:35963088-35963107 | MS.gene056683:CDS | 55.0% | |
| TCGAAAGTCGTGCTGCCACA+CGG | - | chr4.3:35963207-35963226 | None:intergenic | 55.0% | |
| TGTCTTCGAAGACCCTGGGA+TGG | + | chr4.3:35963087-35963106 | MS.gene056683:CDS | 55.0% | |
| TGTGGCAGCACGACTTTCGA+AGG | + | chr4.3:35963207-35963226 | MS.gene056683:CDS | 55.0% | |
| TTCGCCGAAGCTTATCACGG+TGG | - | chr4.3:35963423-35963442 | None:intergenic | 55.0% | |
| CCACTAGACCAACCCATCCC+AGG | - | chr4.3:35963103-35963122 | None:intergenic | 60.0% | |
| TCGAAGACCCTGGGATGGGT+TGG | + | chr4.3:35963092-35963111 | MS.gene056683:CDS | 60.0% | |
| ! | AGGCTTCGGCTTGCAGAGCA+AGG | + | chr4.3:35962533-35962552 | MS.gene056683:CDS | 60.0% |
| ! | GGCTTCGGCTTGCAGAGCAA+GGG | + | chr4.3:35962534-35962553 | MS.gene056683:CDS | 60.0% |
| !! | CCTGGGATGGGTTGGTCTAG+TGG | + | chr4.3:35963100-35963119 | MS.gene056683:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 35962455 | 35963519 | 35962455 | ID=MS.gene056683 |
| chr4.3 | mRNA | 35962455 | 35963519 | 35962455 | ID=MS.gene056683.t1;Parent=MS.gene056683 |
| chr4.3 | exon | 35962455 | 35963519 | 35962455 | ID=MS.gene056683.t1.exon1;Parent=MS.gene056683.t1 |
| chr4.3 | CDS | 35962455 | 35963519 | 35962455 | ID=cds.MS.gene056683.t1;Parent=MS.gene056683.t1 |
| Gene Sequence |
| Protein sequence |
