Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50058.t1 | XP_013456387.2 | 94.1 | 374 | 22 | 0 | 11 | 384 | 60 | 433 | 8.30E-201 | 709.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50058.t1 | Q9C9Q5 | 67.8 | 367 | 112 | 2 | 21 | 382 | 62 | 427 | 1.4e-140 | 500.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50058.t1 | A0A396I8W6 | 94.1 | 374 | 22 | 0 | 11 | 384 | 60 | 433 | 6.0e-201 | 709.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051439 | MS.gene50058 | 0.816039 | 6.79E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene50058 | 0.820393 | 7.03E-53 | -1.69E-46 |
| MS.gene056330 | MS.gene50058 | 0.811342 | 7.34E-51 | -1.69E-46 |
| MS.gene056683 | MS.gene50058 | 0.843204 | 1.62E-58 | -1.69E-46 |
| MS.gene057717 | MS.gene50058 | 0.811209 | 7.85E-51 | -1.69E-46 |
| MS.gene058452 | MS.gene50058 | 0.80795 | 3.93E-50 | -1.69E-46 |
| MS.gene05914 | MS.gene50058 | -0.800936 | 1.14E-48 | -1.69E-46 |
| MS.gene05926 | MS.gene50058 | 0.805512 | 1.29E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene50058 | 0.810008 | 1.43E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene50058 | 0.800197 | 1.61E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50058.t1 | MTR_4g069390 | 95.763 | 354 | 15 | 0 | 31 | 384 | 1 | 354 | 0.0 | 709 |
| MS.gene50058.t1 | MTR_4g069420 | 87.234 | 376 | 34 | 2 | 14 | 384 | 63 | 429 | 0.0 | 672 |
| MS.gene50058.t1 | MTR_4g069350 | 86.898 | 374 | 47 | 1 | 11 | 384 | 60 | 431 | 0.0 | 665 |
| MS.gene50058.t1 | MTR_4g069300 | 83.024 | 377 | 59 | 1 | 11 | 382 | 60 | 436 | 0.0 | 630 |
| MS.gene50058.t1 | MTR_4g069260 | 78.182 | 385 | 78 | 2 | 3 | 382 | 52 | 435 | 0.0 | 626 |
| MS.gene50058.t1 | MTR_4g069430 | 82.667 | 375 | 54 | 1 | 9 | 383 | 58 | 421 | 0.0 | 609 |
| MS.gene50058.t1 | MTR_1g022025 | 69.437 | 373 | 108 | 2 | 15 | 382 | 56 | 427 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50058.t1 | AT1G75110 | 67.575 | 367 | 113 | 3 | 21 | 382 | 62 | 427 | 0.0 | 520 |
| MS.gene50058.t1 | AT1G19360 | 66.489 | 376 | 119 | 3 | 13 | 382 | 53 | 427 | 0.0 | 519 |
| MS.gene50058.t1 | AT1G19360 | 66.489 | 376 | 119 | 3 | 13 | 382 | 53 | 427 | 0.0 | 519 |
| MS.gene50058.t1 | AT1G75120 | 65.761 | 368 | 118 | 3 | 15 | 382 | 43 | 402 | 1.75e-177 | 499 |
| MS.gene50058.t1 | AT1G70630 | 27.803 | 223 | 130 | 8 | 91 | 301 | 215 | 418 | 3.28e-13 | 71.2 |
| MS.gene50058.t1 | AT1G70630 | 27.803 | 223 | 130 | 8 | 91 | 301 | 246 | 449 | 4.44e-13 | 70.9 |
| MS.gene50058.t1 | AT1G70630 | 27.803 | 223 | 130 | 8 | 91 | 301 | 246 | 449 | 4.44e-13 | 70.9 |
| MS.gene50058.t1 | AT1G70630 | 27.803 | 223 | 130 | 8 | 91 | 301 | 383 | 586 | 5.44e-13 | 70.9 |
| MS.gene50058.t1 | AT1G70630 | 28.251 | 223 | 129 | 8 | 91 | 301 | 431 | 634 | 5.95e-13 | 70.9 |
| MS.gene50058.t1 | AT1G70630 | 28.251 | 223 | 129 | 8 | 91 | 301 | 452 | 655 | 6.31e-13 | 70.9 |
| MS.gene50058.t1 | AT1G70630 | 28.251 | 223 | 129 | 8 | 91 | 301 | 462 | 665 | 7.59e-13 | 70.5 |
Find 79 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGGTCTCTTTGGTAAAA+TGG | 0.121490 | 4.2:-37299622 | None:intergenic |
| CATCCCTTCAATTGAGCTTT+TGG | 0.214785 | 4.2:+37299957 | MS.gene50058:CDS |
| ATTGTTGAATATTATGTTAA+TGG | 0.273557 | 4.2:+37300228 | MS.gene50058:CDS |
| CATAATAACATGACAGCTTA+TGG | 0.285401 | 4.2:+37299832 | MS.gene50058:CDS |
| AACCATTATCCGGGTCTCTT+TGG | 0.292080 | 4.2:-37299630 | None:intergenic |
| CCTCTTTAATTGATGCAATA+TGG | 0.293872 | 4.2:-37299339 | None:intergenic |
| CTTTGCAATCTCGTCGTCTA+AGG | 0.306486 | 4.2:-37299578 | None:intergenic |
| TTGTTGAATATTATGTTAAT+GGG | 0.345028 | 4.2:+37300229 | MS.gene50058:CDS |
| TCATGCTGCTAAAAGAACTA+TGG | 0.353213 | 4.2:+37300077 | MS.gene50058:CDS |
| TCTAATAAATTTGCCAATCT+CGG | 0.356388 | 4.2:-37299436 | None:intergenic |
| TACCAAAGAGACCCGGATAA+TGG | 0.362934 | 4.2:+37299628 | MS.gene50058:CDS |
| TAATTCAAGTGAATAATTAC+CGG | 0.395451 | 4.2:-37300174 | None:intergenic |
| CCGGGTCTCTTTGGTAAAAT+GGG | 0.403345 | 4.2:-37299621 | None:intergenic |
| CTAATAAATTTGCCAATCTC+GGG | 0.411225 | 4.2:-37299435 | None:intergenic |
| TGAATCCGTGAACCCGAGAT+TGG | 0.424884 | 4.2:+37299423 | MS.gene50058:CDS |
| TGATCATCTATACCGTGATT+CGG | 0.426234 | 4.2:+37299786 | MS.gene50058:CDS |
| ACAGTATCAAAACCATTATC+CGG | 0.435429 | 4.2:-37299640 | None:intergenic |
| GATTCATCGGGAGCAACATT+AGG | 0.438322 | 4.2:-37299406 | None:intergenic |
| TCTCGGGTTCACGGATTCAT+CGG | 0.439194 | 4.2:-37299419 | None:intergenic |
| GGGAGATGACGGAAAGGCTT+CGG | 0.439869 | 4.2:+37299296 | MS.gene50058:CDS |
| CATGTTAAAATCAGAATTTG+TGG | 0.440337 | 4.2:+37299231 | MS.gene50058:CDS |
| TATACCAACTCTCTTGATAC+TGG | 0.450270 | 4.2:-37299536 | None:intergenic |
| AGGATATTTGTTTACAATTG+TGG | 0.453481 | 4.2:+37299913 | MS.gene50058:CDS |
| CGAGGTGTACCATTGGGAAA+AGG | 0.456748 | 4.2:-37300270 | None:intergenic |
| CACTGCTTAACCTTTGGTGA+TGG | 0.480055 | 4.2:-37298609 | None:intergenic |
| CTCGGGTTCACGGATTCATC+GGG | 0.480828 | 4.2:-37299418 | None:intergenic |
| TGATAAGCTTCGGCGAATGA+AGG | 0.485133 | 4.2:+37300203 | MS.gene50058:CDS |
| CTCTTTCATCCATCACATCC+TGG | 0.487595 | 4.2:+37300042 | MS.gene50058:CDS |
| TAATCTCAGTAAATTGAAAC+CGG | 0.490101 | 4.2:+37300155 | MS.gene50058:CDS |
| AGCTCAATTGAAGGGATGGT+TGG | 0.490489 | 4.2:-37299952 | None:intergenic |
| TGAAGGAGATCCTCGAGGTC+TGG | 0.492358 | 4.2:+37299509 | MS.gene50058:CDS |
| CCTTCACATTTGAGTTTGCA+AGG | 0.503255 | 4.2:-37299492 | None:intergenic |
| GTCTTCGAAGACCCTGGGAT+GGG | 0.503992 | 4.2:+37299865 | MS.gene50058:CDS |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4.2:-37299781 | None:intergenic |
| ATTTGCCAATCTCGGGTTCA+CGG | 0.510225 | 4.2:-37299428 | None:intergenic |
| AGGCTTCGGCTTGCAGAGCA+AGG | 0.512498 | 4.2:+37299310 | MS.gene50058:CDS |
| CGGTCCAAAAGCTCAATTGA+AGG | 0.514640 | 4.2:-37299961 | None:intergenic |
| CCACTAGACCAACCCATCCC+AGG | 0.518389 | 4.2:-37299877 | None:intergenic |
| CCATATTGCATCAATTAAAG+AGG | 0.518667 | 4.2:+37299339 | MS.gene50058:CDS |
| ATTACCACCGTGATAAGCTT+CGG | 0.519971 | 4.2:+37300193 | MS.gene50058:CDS |
| AACGATGTCTTCGAAGACCC+TGG | 0.520201 | 4.2:+37299859 | MS.gene50058:CDS |
| CCATCACATCCTGGTTATGA+CGG | 0.520532 | 4.2:+37300051 | MS.gene50058:CDS |
| CCTGGGATGGGTTGGTCTAG+TGG | 0.521581 | 4.2:+37299877 | MS.gene50058:CDS |
| GTTATTATGACCATCGCTCA+TGG | 0.530943 | 4.2:-37299818 | None:intergenic |
| GGTTATCGAGGTGTACCATT+GGG | 0.536774 | 4.2:-37300276 | None:intergenic |
| ATTGTAAACAAATATCCTCC+TGG | 0.543398 | 4.2:-37299908 | None:intergenic |
| ATCGGGAGCAACATTAGGAC+TGG | 0.543690 | 4.2:-37299401 | None:intergenic |
| TCGAAGACCCTGGGATGGGT+TGG | 0.544120 | 4.2:+37299869 | MS.gene50058:CDS |
| CAAAAGCTCAATTGAAGGGA+TGG | 0.548256 | 4.2:-37299956 | None:intergenic |
| GCATGAAGCCCGTCATAACC+AGG | 0.559070 | 4.2:-37300060 | None:intergenic |
| CATCACATCCTGGTTATGAC+GGG | 0.559997 | 4.2:+37300052 | MS.gene50058:CDS |
| AAAACAGTTGAGGGAGATGA+CGG | 0.560293 | 4.2:+37299285 | MS.gene50058:CDS |
| GAAAAGGTTTGAGAGCGTCT+TGG | 0.567598 | 4.2:-37300254 | None:intergenic |
| TCGAAAGTCGTGCTGCCACA+CGG | 0.575082 | 4.2:-37299981 | None:intergenic |
| CACTAGACCAACCCATCCCA+GGG | 0.582249 | 4.2:-37299876 | None:intergenic |
| CTTCACATTTGAGTTTGCAA+GGG | 0.582819 | 4.2:-37299491 | None:intergenic |
| TGTTCTTCAACCATCACCAA+AGG | 0.592567 | 4.2:+37298599 | MS.gene50058:CDS |
| ATTGCCTTGACAGTACCAAA+AGG | 0.592822 | 4.2:-37299373 | None:intergenic |
| TTCACCAGTATCAAGAGAGT+TGG | 0.596908 | 4.2:+37299532 | MS.gene50058:CDS |
| CAGTATCAAAACCATTATCC+GGG | 0.598901 | 4.2:-37299639 | None:intergenic |
| AGGTTATCGAGGTGTACCAT+TGG | 0.601144 | 4.2:-37300277 | None:intergenic |
| TGTCTTCGAAGACCCTGGGA+TGG | 0.601932 | 4.2:+37299864 | MS.gene50058:CDS |
| ACGATGTCTTCGAAGACCCT+GGG | 0.602485 | 4.2:+37299860 | MS.gene50058:CDS |
| CCGTCATAACCAGGATGTGA+TGG | 0.606127 | 4.2:-37300051 | None:intergenic |
| TCATTCGCCGAAGCTTATCA+CGG | 0.611223 | 4.2:-37300200 | None:intergenic |
| GTTCCTCGTTGAAAACGACT+TGG | 0.612096 | 4.2:-37300020 | None:intergenic |
| CCTTGCAAACTCAAATGTGA+AGG | 0.617789 | 4.2:+37299492 | MS.gene50058:CDS |
| TGTGGCAGCACGACTTTCGA+AGG | 0.620454 | 4.2:+37299984 | MS.gene50058:CDS |
| GGTCCAAAAGCTCAATTGAA+GGG | 0.628652 | 4.2:-37299960 | None:intergenic |
| GATGTTGAGTCCATGAGCGA+TGG | 0.629878 | 4.2:+37299808 | MS.gene50058:CDS |
| TGGACTCAACATCCGAATCA+CGG | 0.631798 | 4.2:-37299798 | None:intergenic |
| GGCTTCGGCTTGCAGAGCAA+GGG | 0.638726 | 4.2:+37299311 | MS.gene50058:CDS |
| TAGAATACGAAATTTAAGCG+TGG | 0.644770 | 4.2:-37299692 | None:intergenic |
| GAGATTAGCATCATTCCTCA+CGG | 0.654966 | 4.2:-37300139 | None:intergenic |
| AGTTGAGGGAGATGACGGAA+AGG | 0.665208 | 4.2:+37299290 | MS.gene50058:CDS |
| ACACAGAAACAAGGTTATCG+AGG | 0.668454 | 4.2:-37300288 | None:intergenic |
| TACTGGTGAACCAGACCTCG+AGG | 0.671337 | 4.2:-37299519 | None:intergenic |
| TTCGCCGAAGCTTATCACGG+TGG | 0.734041 | 4.2:-37300197 | None:intergenic |
| AAATGTGAAGGAGATCCTCG+AGG | 0.736451 | 4.2:+37299504 | MS.gene50058:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTATTTTATTT+TGG | + | chr4.2:37299167-37299186 | MS.gene50058:intron | 0.0% |
| !! | ATTGTTGAATATTATGTTAA+TGG | + | chr4.2:37300228-37300247 | MS.gene50058:CDS | 15.0% |
| !! | TTGGAAAATAAATTCTAATA+AGG | + | chr4.2:37298928-37298947 | MS.gene50058:intron | 15.0% |
| !! | TTGTTGAATATTATGTTAAT+GGG | + | chr4.2:37300229-37300248 | MS.gene50058:CDS | 15.0% |
| !!! | TTATTTTATTTTATTTTGGC+AGG | + | chr4.2:37299171-37299190 | MS.gene50058:intron | 15.0% |
| !! | TAATTCAAGTGAATAATTAC+CGG | - | chr4.2:37300177-37300196 | None:intergenic | 20.0% |
| !! | TTAACTTTAGTCAAAACAAA+GGG | + | chr4.2:37298892-37298911 | MS.gene50058:intron | 20.0% |
| !!! | AAAGGGAATGATATTTTAAT+TGG | + | chr4.2:37298909-37298928 | MS.gene50058:intron | 20.0% |
| !!! | ACAATTAATCATCTATTTTC+CGG | - | chr4.2:37298837-37298856 | None:intergenic | 20.0% |
| !!! | TTTAACTTTAGTCAAAACAA+AGG | + | chr4.2:37298891-37298910 | MS.gene50058:intron | 20.0% |
| ! | AATCAAAATAAGAGTCGTAA+GGG | + | chr4.2:37299052-37299071 | MS.gene50058:intron | 25.0% |
| ! | AGGATATTTGTTTACAATTG+TGG | + | chr4.2:37299913-37299932 | MS.gene50058:CDS | 25.0% |
| ! | CATGTTAAAATCAGAATTTG+TGG | + | chr4.2:37299231-37299250 | MS.gene50058:CDS | 25.0% |
| ! | CCTATAAGAACTCTAATATT+GGG | - | chr4.2:37299097-37299116 | None:intergenic | 25.0% |
| ! | CTATAAGAACTCTAATATTG+GGG | - | chr4.2:37299096-37299115 | None:intergenic | 25.0% |
| ! | TAATCTCAGTAAATTGAAAC+CGG | + | chr4.2:37300155-37300174 | MS.gene50058:CDS | 25.0% |
| ! | TCCTATAAGAACTCTAATAT+TGG | - | chr4.2:37299098-37299117 | None:intergenic | 25.0% |
| ! | TCTAATAAATTTGCCAATCT+CGG | - | chr4.2:37299439-37299458 | None:intergenic | 25.0% |
| ! | TTAAGCAGTGATAAAGTAAA+TGG | + | chr4.2:37298622-37298641 | MS.gene50058:intron | 25.0% |
| !!! | ATCTTGATAATGATGAAGAA+AGG | - | chr4.2:37299011-37299030 | None:intergenic | 25.0% |
| ACAGTATCAAAACCATTATC+CGG | - | chr4.2:37299643-37299662 | None:intergenic | 30.0% | |
| ACTGTTGGAAAAATTGCAAA+CGG | + | chr4.2:37299658-37299677 | MS.gene50058:CDS | 30.0% | |
| AGAGCTAAAAAAACAGTTGA+GGG | + | chr4.2:37299276-37299295 | MS.gene50058:CDS | 30.0% | |
| ATTGTAAACAAATATCCTCC+TGG | - | chr4.2:37299911-37299930 | None:intergenic | 30.0% | |
| CAATCAAAATAAGAGTCGTA+AGG | + | chr4.2:37299051-37299070 | MS.gene50058:intron | 30.0% | |
| CATAATAACATGACAGCTTA+TGG | + | chr4.2:37299832-37299851 | MS.gene50058:CDS | 30.0% | |
| CATTATCAAGATTATGTGAG+AGG | + | chr4.2:37299019-37299038 | MS.gene50058:intron | 30.0% | |
| CCATATTGCATCAATTAAAG+AGG | + | chr4.2:37299339-37299358 | MS.gene50058:CDS | 30.0% | |
| CCCAATATTAGAGTTCTTAT+AGG | + | chr4.2:37299094-37299113 | MS.gene50058:intron | 30.0% | |
| CCTCTTTAATTGATGCAATA+TGG | - | chr4.2:37299342-37299361 | None:intergenic | 30.0% | |
| CTAATAAATTTGCCAATCTC+GGG | - | chr4.2:37299438-37299457 | None:intergenic | 30.0% | |
| TAGAATACGAAATTTAAGCG+TGG | - | chr4.2:37299695-37299714 | None:intergenic | 30.0% | |
| TCAATTAAAGAGGAAAAAGC+TGG | + | chr4.2:37299349-37299368 | MS.gene50058:CDS | 30.0% | |
| TGAGAAACAAAGAAGTCATT+GGG | - | chr4.2:37299143-37299162 | None:intergenic | 30.0% | |
| TTGAGAAACAAAGAAGTCAT+TGG | - | chr4.2:37299144-37299163 | None:intergenic | 30.0% | |
| ! | ATGGAATCTTGTCTTTTGAT+CGG | - | chr4.2:37298793-37298812 | None:intergenic | 30.0% |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | + | chr4.2:37299712-37299731 | MS.gene50058:CDS | 30.0% |
| ! | GTGACTTCTTTTGTAGTATA+TGG | - | chr4.2:37298812-37298831 | None:intergenic | 30.0% |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | + | chr4.2:37299711-37299730 | MS.gene50058:CDS | 30.0% |
| !!! | GATAATGGTTTTGATACTGT+TGG | + | chr4.2:37299643-37299662 | MS.gene50058:CDS | 30.0% |
| AAGGATATTCACTCTTTCTG+TGG | - | chr4.2:37298696-37298715 | None:intergenic | 35.0% | |
| ACTACAAAAGAAGTCACATC+CGG | + | chr4.2:37298815-37298834 | MS.gene50058:intron | 35.0% | |
| CAGAGCTAAAAAAACAGTTG+AGG | + | chr4.2:37299275-37299294 | MS.gene50058:CDS | 35.0% | |
| CAGTATCAAAACCATTATCC+GGG | - | chr4.2:37299642-37299661 | None:intergenic | 35.0% | |
| CTTTATCACTGCTTAACCTT+TGG | - | chr4.2:37298618-37298637 | None:intergenic | 35.0% | |
| TATACCAACTCTCTTGATAC+TGG | - | chr4.2:37299539-37299558 | None:intergenic | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | - | chr4.2:37299784-37299803 | None:intergenic | 35.0% | |
| TCATGCTGCTAAAAGAACTA+TGG | + | chr4.2:37300077-37300096 | MS.gene50058:CDS | 35.0% | |
| TGATCATCTATACCGTGATT+CGG | + | chr4.2:37299786-37299805 | MS.gene50058:CDS | 35.0% | |
| ! | AATCTTGTCTTTTGATCGGT+GGG | - | chr4.2:37298789-37298808 | None:intergenic | 35.0% |
| ! | ACTTTCGAAGGAAAAAGCAT+GGG | + | chr4.2:37299996-37300015 | MS.gene50058:CDS | 35.0% |
| ! | CTTCACATTTGAGTTTGCAA+GGG | - | chr4.2:37299494-37299513 | None:intergenic | 35.0% |
| ! | GATCAAGCTTTGTAGTTCTT+TGG | - | chr4.2:37298735-37298754 | None:intergenic | 35.0% |
| AAAACAGTTGAGGGAGATGA+CGG | + | chr4.2:37299285-37299304 | MS.gene50058:CDS | 40.0% | |
| ATTACCACCGTGATAAGCTT+CGG | + | chr4.2:37300193-37300212 | MS.gene50058:CDS | 40.0% | |
| ATTGCCTTGACAGTACCAAA+AGG | - | chr4.2:37299376-37299395 | None:intergenic | 40.0% | |
| CAAAAGCTCAATTGAAGGGA+TGG | - | chr4.2:37299959-37299978 | None:intergenic | 40.0% | |
| CCTTGCAAACTCAAATGTGA+AGG | + | chr4.2:37299492-37299511 | MS.gene50058:CDS | 40.0% | |
| GACTTTCGAAGGAAAAAGCA+TGG | + | chr4.2:37299995-37300014 | MS.gene50058:CDS | 40.0% | |
| GAGATTAGCATCATTCCTCA+CGG | - | chr4.2:37300142-37300161 | None:intergenic | 40.0% | |
| GGTCCAAAAGCTCAATTGAA+GGG | - | chr4.2:37299963-37299982 | None:intergenic | 40.0% | |
| GTTATTATGACCATCGCTCA+TGG | - | chr4.2:37299821-37299840 | None:intergenic | 40.0% | |
| TGTTCTTCAACCATCACCAA+AGG | + | chr4.2:37298599-37298618 | MS.gene50058:CDS | 40.0% | |
| TTCACCAGTATCAAGAGAGT+TGG | + | chr4.2:37299532-37299551 | MS.gene50058:CDS | 40.0% | |
| ! | CATCCCTTCAATTGAGCTTT+TGG | + | chr4.2:37299957-37299976 | MS.gene50058:CDS | 40.0% |
| ! | CCTTCACATTTGAGTTTGCA+AGG | - | chr4.2:37299495-37299514 | None:intergenic | 40.0% |
| ! | GAATCTTGTCTTTTGATCGG+TGG | - | chr4.2:37298790-37298809 | None:intergenic | 40.0% |
| AAATGTGAAGGAGATCCTCG+AGG | + | chr4.2:37299504-37299523 | MS.gene50058:CDS | 45.0% | |
| AACCATTATCCGGGTCTCTT+TGG | - | chr4.2:37299633-37299652 | None:intergenic | 45.0% | |
| AGCTCAATTGAAGGGATGGT+TGG | - | chr4.2:37299955-37299974 | None:intergenic | 45.0% | |
| ATTTGCCAATCTCGGGTTCA+CGG | - | chr4.2:37299431-37299450 | None:intergenic | 45.0% | |
| CACTGCTTAACCTTTGGTGA+TGG | - | chr4.2:37298612-37298631 | None:intergenic | 45.0% | |
| CATCACATCCTGGTTATGAC+GGG | + | chr4.2:37300052-37300071 | MS.gene50058:CDS | 45.0% | |
| CCATCACATCCTGGTTATGA+CGG | + | chr4.2:37300051-37300070 | MS.gene50058:CDS | 45.0% | |
| CCGGGTCTCTTTGGTAAAAT+GGG | - | chr4.2:37299624-37299643 | None:intergenic | 45.0% | |
| CGGTCCAAAAGCTCAATTGA+AGG | - | chr4.2:37299964-37299983 | None:intergenic | 45.0% | |
| CTCTTTCATCCATCACATCC+TGG | + | chr4.2:37300042-37300061 | MS.gene50058:CDS | 45.0% | |
| CTTTGCAATCTCGTCGTCTA+AGG | - | chr4.2:37299581-37299600 | None:intergenic | 45.0% | |
| GATTCATCGGGAGCAACATT+AGG | - | chr4.2:37299409-37299428 | None:intergenic | 45.0% | |
| GTTCCTCGTTGAAAACGACT+TGG | - | chr4.2:37300023-37300042 | None:intergenic | 45.0% | |
| TACCAAAGAGACCCGGATAA+TGG | + | chr4.2:37299628-37299647 | MS.gene50058:CDS | 45.0% | |
| TCATTCGCCGAAGCTTATCA+CGG | - | chr4.2:37300203-37300222 | None:intergenic | 45.0% | |
| TCCGGGTCTCTTTGGTAAAA+TGG | - | chr4.2:37299625-37299644 | None:intergenic | 45.0% | |
| TGATAAGCTTCGGCGAATGA+AGG | + | chr4.2:37300203-37300222 | MS.gene50058:CDS | 45.0% | |
| TGGACTCAACATCCGAATCA+CGG | - | chr4.2:37299801-37299820 | None:intergenic | 45.0% | |
| ! | AATTGAGCTTTTGGACCGTG+TGG | + | chr4.2:37299966-37299985 | MS.gene50058:CDS | 45.0% |
| ! | CCCATTTTACCAAAGAGACC+CGG | + | chr4.2:37299621-37299640 | MS.gene50058:CDS | 45.0% |
| ! | GAGGAAAAAGCTGGACCTTT+TGG | + | chr4.2:37299358-37299377 | MS.gene50058:CDS | 45.0% |
| ! | GCTCTCAAACCTTTTCCCAA+TGG | + | chr4.2:37300261-37300280 | MS.gene50058:CDS | 45.0% |
| ! | TGGACCTTTTGGTACTGTCA+AGG | + | chr4.2:37299369-37299388 | MS.gene50058:CDS | 45.0% |
| !! | GAAAAGGTTTGAGAGCGTCT+TGG | - | chr4.2:37300257-37300276 | None:intergenic | 45.0% |
| !! | GAGTTCTTTTCAAGACCGTG+AGG | + | chr4.2:37300124-37300143 | MS.gene50058:CDS | 45.0% |
| AACGATGTCTTCGAAGACCC+TGG | + | chr4.2:37299859-37299878 | MS.gene50058:CDS | 50.0% | |
| ACGATGTCTTCGAAGACCCT+GGG | + | chr4.2:37299860-37299879 | MS.gene50058:CDS | 50.0% | |
| ATCGGGAGCAACATTAGGAC+TGG | - | chr4.2:37299404-37299423 | None:intergenic | 50.0% | |
| CCGTCATAACCAGGATGTGA+TGG | - | chr4.2:37300054-37300073 | None:intergenic | 50.0% | |
| CGAGGTGTACCATTGGGAAA+AGG | - | chr4.2:37300273-37300292 | None:intergenic | 50.0% | |
| GATGTTGAGTCCATGAGCGA+TGG | + | chr4.2:37299808-37299827 | MS.gene50058:CDS | 50.0% | |
| TCTCGGGTTCACGGATTCAT+CGG | - | chr4.2:37299422-37299441 | None:intergenic | 50.0% | |
| TGAATCCGTGAACCCGAGAT+TGG | + | chr4.2:37299423-37299442 | MS.gene50058:CDS | 50.0% | |
| TGGTGCGCATATGTTCGAGA+AGG | - | chr4.2:37298715-37298734 | None:intergenic | 50.0% | |
| ! | CTAGTGGCGTTTTTACCAGG+AGG | + | chr4.2:37299893-37299912 | MS.gene50058:CDS | 50.0% |
| ! | GGTCTAGTGGCGTTTTTACC+AGG | + | chr4.2:37299890-37299909 | MS.gene50058:CDS | 50.0% |
| !! | AGTTGAGGGAGATGACGGAA+AGG | + | chr4.2:37299290-37299309 | MS.gene50058:CDS | 50.0% |
| !! | GGACCAAGTCGTTTTCAACG+AGG | + | chr4.2:37300017-37300036 | MS.gene50058:CDS | 50.0% |
| CACTAGACCAACCCATCCCA+GGG | - | chr4.2:37299879-37299898 | None:intergenic | 55.0% | |
| CTCGGGTTCACGGATTCATC+GGG | - | chr4.2:37299421-37299440 | None:intergenic | 55.0% | |
| GCATGAAGCCCGTCATAACC+AGG | - | chr4.2:37300063-37300082 | None:intergenic | 55.0% | |
| GTCTTCGAAGACCCTGGGAT+GGG | + | chr4.2:37299865-37299884 | MS.gene50058:CDS | 55.0% | |
| TACTGGTGAACCAGACCTCG+AGG | - | chr4.2:37299522-37299541 | None:intergenic | 55.0% | |
| TCGAAAGTCGTGCTGCCACA+CGG | - | chr4.2:37299984-37300003 | None:intergenic | 55.0% | |
| TGAAGGAGATCCTCGAGGTC+TGG | + | chr4.2:37299509-37299528 | MS.gene50058:CDS | 55.0% | |
| TGTCTTCGAAGACCCTGGGA+TGG | + | chr4.2:37299864-37299883 | MS.gene50058:CDS | 55.0% | |
| TGTGGCAGCACGACTTTCGA+AGG | + | chr4.2:37299984-37300003 | MS.gene50058:CDS | 55.0% | |
| TTCGCCGAAGCTTATCACGG+TGG | - | chr4.2:37300200-37300219 | None:intergenic | 55.0% | |
| !! | GGGAGATGACGGAAAGGCTT+CGG | + | chr4.2:37299296-37299315 | MS.gene50058:CDS | 55.0% |
| CCACTAGACCAACCCATCCC+AGG | - | chr4.2:37299880-37299899 | None:intergenic | 60.0% | |
| TCGAAGACCCTGGGATGGGT+TGG | + | chr4.2:37299869-37299888 | MS.gene50058:CDS | 60.0% | |
| ! | AGGCTTCGGCTTGCAGAGCA+AGG | + | chr4.2:37299310-37299329 | MS.gene50058:CDS | 60.0% |
| ! | GGCTTCGGCTTGCAGAGCAA+GGG | + | chr4.2:37299311-37299330 | MS.gene50058:CDS | 60.0% |
| !! | CCTGGGATGGGTTGGTCTAG+TGG | + | chr4.2:37299877-37299896 | MS.gene50058:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 37298570 | 37300296 | 37298570 | ID=MS.gene50058 |
| chr4.2 | mRNA | 37298570 | 37300296 | 37298570 | ID=MS.gene50058.t1;Parent=MS.gene50058 |
| chr4.2 | exon | 37298570 | 37298620 | 37298570 | ID=MS.gene50058.t1.exon1;Parent=MS.gene50058.t1 |
| chr4.2 | CDS | 37298570 | 37298620 | 37298570 | ID=cds.MS.gene50058.t1;Parent=MS.gene50058.t1 |
| chr4.2 | exon | 37299193 | 37300296 | 37299193 | ID=MS.gene50058.t1.exon2;Parent=MS.gene50058.t1 |
| chr4.2 | CDS | 37299193 | 37300296 | 37299193 | ID=cds.MS.gene50058.t1;Parent=MS.gene50058.t1 |
| Gene Sequence |
| Protein sequence |
