Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056815.t1 | RHN39861.1 | 96.6 | 702 | 23 | 1 | 1 | 702 | 1 | 701 | 0.00E+00 | 1317.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056815.t1 | P92949 | 59.0 | 708 | 273 | 9 | 6 | 702 | 24 | 725 | 5.6e-236 | 818.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056815.t1 | A0A396GI74 | 96.6 | 702 | 23 | 1 | 1 | 702 | 1 | 701 | 0.0e+00 | 1317.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056815 | MS.gene068713 | 0.821252 | 4.46E-53 | -1.69E-46 |
| MS.gene056815 | MS.gene84262 | 0.830836 | 2.35E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056815.t1 | MTR_8g028780 | 96.439 | 702 | 24 | 1 | 1 | 702 | 1 | 701 | 0.0 | 1375 |
| MS.gene056815.t1 | MTR_8g028780 | 92.224 | 733 | 25 | 2 | 1 | 702 | 1 | 732 | 0.0 | 1308 |
| MS.gene056815.t1 | MTR_8g028795 | 86.123 | 699 | 94 | 3 | 6 | 702 | 19 | 716 | 0.0 | 1116 |
| MS.gene056815.t1 | MTR_8g031070 | 79.345 | 702 | 62 | 7 | 1 | 702 | 1 | 619 | 0.0 | 1043 |
| MS.gene056815.t1 | MTR_1g100150 | 52.833 | 706 | 325 | 6 | 1 | 702 | 1 | 702 | 0.0 | 767 |
| MS.gene056815.t1 | MTR_1g100130 | 53.116 | 706 | 323 | 6 | 1 | 702 | 6 | 707 | 0.0 | 763 |
| MS.gene056815.t1 | MTR_1g100130 | 56.689 | 598 | 254 | 4 | 107 | 702 | 2 | 596 | 0.0 | 695 |
| MS.gene056815.t1 | MTR_2g028530 | 32.857 | 700 | 407 | 17 | 35 | 700 | 68 | 738 | 2.28e-115 | 364 |
| MS.gene056815.t1 | MTR_4g105080 | 33.050 | 705 | 425 | 17 | 7 | 687 | 8 | 689 | 5.39e-109 | 346 |
| MS.gene056815.t1 | MTR_4g105080 | 35.104 | 527 | 301 | 14 | 185 | 687 | 42 | 551 | 3.58e-95 | 306 |
| MS.gene056815.t1 | MTR_8g099030 | 30.769 | 247 | 131 | 9 | 268 | 485 | 559 | 794 | 4.63e-21 | 99.0 |
| MS.gene056815.t1 | MTR_4g109530 | 29.020 | 255 | 131 | 8 | 227 | 445 | 428 | 668 | 4.70e-21 | 98.6 |
| MS.gene056815.t1 | MTR_4g109530 | 29.020 | 255 | 131 | 8 | 227 | 445 | 413 | 653 | 6.10e-21 | 98.6 |
| MS.gene056815.t1 | MTR_8g095520 | 28.182 | 220 | 119 | 7 | 268 | 454 | 520 | 733 | 8.87e-19 | 91.7 |
| MS.gene056815.t1 | MTR_8g028685 | 81.250 | 48 | 9 | 0 | 655 | 702 | 80 | 127 | 1.74e-18 | 82.4 |
| MS.gene056815.t1 | MTR_2g043900 | 29.187 | 209 | 115 | 6 | 268 | 446 | 548 | 753 | 2.09e-18 | 90.5 |
| MS.gene056815.t1 | MTR_2g043900 | 29.187 | 209 | 115 | 6 | 268 | 446 | 548 | 753 | 2.20e-18 | 90.5 |
| MS.gene056815.t1 | MTR_2g043900 | 29.187 | 209 | 115 | 6 | 268 | 446 | 548 | 753 | 2.47e-18 | 90.1 |
| MS.gene056815.t1 | MTR_3g098350 | 27.442 | 215 | 115 | 6 | 268 | 446 | 534 | 743 | 5.01e-18 | 89.4 |
| MS.gene056815.t1 | MTR_3g098380 | 27.727 | 220 | 120 | 8 | 268 | 454 | 541 | 754 | 5.39e-18 | 89.4 |
| MS.gene056815.t1 | MTR_1g083290 | 26.415 | 212 | 120 | 6 | 268 | 446 | 511 | 719 | 4.89e-17 | 85.9 |
| MS.gene056815.t1 | MTR_7g113130 | 25.118 | 211 | 123 | 6 | 268 | 446 | 524 | 731 | 1.75e-16 | 84.3 |
| MS.gene056815.t1 | MTR_7g113130 | 25.118 | 211 | 123 | 6 | 268 | 446 | 524 | 731 | 1.97e-16 | 84.0 |
| MS.gene056815.t1 | MTR_3g098320 | 25.556 | 270 | 148 | 10 | 268 | 497 | 513 | 769 | 1.32e-15 | 81.6 |
| MS.gene056815.t1 | MTR_3g098320 | 25.556 | 270 | 148 | 10 | 268 | 497 | 522 | 778 | 1.60e-15 | 81.3 |
| MS.gene056815.t1 | MTR_8g099030 | 30.323 | 155 | 90 | 5 | 268 | 407 | 559 | 710 | 4.51e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056815.t1 | AT1G01580 | 59.605 | 708 | 269 | 9 | 6 | 702 | 24 | 725 | 0.0 | 837 |
| MS.gene056815.t1 | AT1G01580 | 59.605 | 708 | 269 | 9 | 6 | 702 | 102 | 803 | 0.0 | 837 |
| MS.gene056815.t1 | AT1G01590 | 53.501 | 714 | 305 | 12 | 1 | 702 | 6 | 704 | 0.0 | 755 |
| MS.gene056815.t1 | AT1G23020 | 53.429 | 700 | 306 | 8 | 6 | 702 | 12 | 694 | 0.0 | 727 |
| MS.gene056815.t1 | AT1G23020 | 53.429 | 700 | 306 | 8 | 6 | 702 | 35 | 717 | 0.0 | 727 |
| MS.gene056815.t1 | AT1G23020 | 53.495 | 701 | 303 | 10 | 6 | 702 | 12 | 693 | 0.0 | 725 |
| MS.gene056815.t1 | AT1G23020 | 53.495 | 701 | 303 | 10 | 6 | 702 | 12 | 693 | 0.0 | 725 |
| MS.gene056815.t1 | AT1G23020 | 53.495 | 701 | 303 | 10 | 6 | 702 | 35 | 716 | 0.0 | 724 |
| MS.gene056815.t1 | AT1G23020 | 53.495 | 701 | 303 | 10 | 6 | 702 | 35 | 716 | 0.0 | 724 |
| MS.gene056815.t1 | AT1G23020 | 53.505 | 699 | 303 | 9 | 6 | 702 | 12 | 690 | 0.0 | 724 |
| MS.gene056815.t1 | AT5G23990 | 50.355 | 705 | 332 | 7 | 6 | 702 | 5 | 699 | 0.0 | 720 |
| MS.gene056815.t1 | AT5G23980 | 50.425 | 706 | 330 | 8 | 6 | 702 | 5 | 699 | 0.0 | 717 |
| MS.gene056815.t1 | AT5G23990 | 45.957 | 705 | 321 | 8 | 6 | 702 | 5 | 657 | 0.0 | 630 |
| MS.gene056815.t1 | AT5G23990 | 53.417 | 556 | 249 | 4 | 155 | 702 | 14 | 567 | 0.0 | 615 |
| MS.gene056815.t1 | AT5G50160 | 31.114 | 736 | 428 | 18 | 18 | 701 | 19 | 727 | 5.04e-110 | 350 |
| MS.gene056815.t1 | AT5G49730 | 32.005 | 728 | 442 | 18 | 8 | 700 | 27 | 736 | 9.35e-106 | 338 |
| MS.gene056815.t1 | AT5G49740 | 30.178 | 729 | 456 | 16 | 8 | 700 | 34 | 745 | 1.55e-102 | 330 |
| MS.gene056815.t1 | AT5G49740 | 29.855 | 690 | 441 | 14 | 8 | 671 | 34 | 706 | 1.61e-98 | 319 |
| MS.gene056815.t1 | AT5G49730 | 35.225 | 511 | 309 | 8 | 8 | 503 | 27 | 530 | 3.26e-98 | 313 |
| MS.gene056815.t1 | AT5G49740 | 33.915 | 516 | 311 | 10 | 8 | 503 | 34 | 539 | 3.11e-94 | 303 |
| MS.gene056815.t1 | AT5G50160 | 31.720 | 558 | 309 | 14 | 196 | 701 | 11 | 548 | 6.79e-87 | 283 |
| MS.gene056815.t1 | AT1G19230 | 30.159 | 252 | 140 | 6 | 261 | 481 | 536 | 782 | 2.17e-23 | 106 |
| MS.gene056815.t1 | AT1G19230 | 30.159 | 252 | 140 | 6 | 261 | 481 | 562 | 808 | 2.63e-23 | 106 |
| MS.gene056815.t1 | AT4G25090 | 30.144 | 209 | 118 | 6 | 268 | 451 | 484 | 689 | 1.08e-22 | 104 |
| MS.gene056815.t1 | AT4G25090 | 30.144 | 209 | 118 | 6 | 268 | 451 | 472 | 677 | 1.50e-22 | 103 |
| MS.gene056815.t1 | AT1G64060 | 31.197 | 234 | 126 | 8 | 268 | 472 | 565 | 792 | 4.60e-22 | 102 |
| MS.gene056815.t1 | AT5G47910 | 29.187 | 209 | 115 | 6 | 268 | 446 | 554 | 759 | 9.02e-20 | 95.1 |
| MS.gene056815.t1 | AT1G09090 | 29.596 | 223 | 120 | 8 | 258 | 446 | 465 | 684 | 1.93e-19 | 94.0 |
| MS.gene056815.t1 | AT5G51060 | 27.273 | 220 | 122 | 8 | 268 | 455 | 531 | 744 | 1.31e-18 | 91.3 |
| MS.gene056815.t1 | AT5G07390 | 28.302 | 212 | 116 | 6 | 268 | 446 | 522 | 730 | 6.84e-18 | 89.0 |
| MS.gene056815.t1 | AT5G07390 | 28.302 | 212 | 116 | 6 | 268 | 446 | 490 | 698 | 7.80e-18 | 88.6 |
| MS.gene056815.t1 | AT4G11230 | 29.189 | 185 | 109 | 5 | 303 | 469 | 597 | 777 | 1.29e-16 | 84.7 |
| MS.gene056815.t1 | AT3G45810 | 27.511 | 229 | 121 | 6 | 260 | 446 | 497 | 722 | 4.21e-13 | 73.6 |
| MS.gene056815.t1 | AT1G09090 | 29.032 | 155 | 93 | 5 | 258 | 398 | 465 | 616 | 2.06e-11 | 67.8 |
Find 152 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTGGTGCTGTTGTTTC+TGG | 0.048121 | 8.4:-66802580 | MS.gene056815:CDS |
| CAATATTCTCGGATCCTTTA+AGG | 0.086839 | 8.4:-66798969 | MS.gene056815:CDS |
| CAATTCATCCTCAAACTTTA+TGG | 0.096075 | 8.4:-66799152 | MS.gene056815:CDS |
| GATTTGATCCTACCAATTTC+TGG | 0.159746 | 8.4:-66799255 | MS.gene056815:CDS |
| CCCTAGTTTCTACCTCTTCT+TGG | 0.174450 | 8.4:-66800080 | MS.gene056815:CDS |
| AGTGTGGGAGTTCTTGTTTC+AGG | 0.196177 | 8.4:-66798555 | MS.gene056815:CDS |
| GTTGCATCAAGTATCATATT+TGG | 0.222234 | 8.4:-66801075 | MS.gene056815:CDS |
| AAGGCTGATCCTACCTATTT+TGG | 0.222309 | 8.4:-66802486 | MS.gene056815:CDS |
| CAAATACTTTCAATCTAAAA+TGG | 0.223646 | 8.4:-66802527 | MS.gene056815:CDS |
| CTATTAGAAGTAACGGTAAA+TGG | 0.241301 | 8.4:+66799708 | None:intergenic |
| CGTTACTTCTAATAGTAAAT+TGG | 0.241495 | 8.4:-66799700 | MS.gene056815:CDS |
| TCATCTGTGCTACCAATATT+TGG | 0.246300 | 8.4:-66801112 | MS.gene056815:CDS |
| ATCATCTTCCTTATTATAAT+CGG | 0.250318 | 8.4:-66799039 | MS.gene056815:CDS |
| TGTTCTTGAATGAAGAAATT+AGG | 0.262375 | 8.4:+66799298 | None:intergenic |
| CAAAGTTGGAGTATCAAATT+TGG | 0.274753 | 8.4:-66800266 | MS.gene056815:CDS |
| TTTCAAGTGTAGCTGTCTTA+TGG | 0.275222 | 8.4:-66798903 | MS.gene056815:CDS |
| TATACCTTGTGCACCAAAAT+AGG | 0.277983 | 8.4:+66802473 | None:intergenic |
| ATGTTAAGGAACGCCCTTAA+AGG | 0.294040 | 8.4:+66798955 | None:intergenic |
| ATTTATTGCAGATGTTGATA+TGG | 0.295928 | 8.4:-66800291 | MS.gene056815:intron |
| TTGCAACCATTCCCAGAATT+AGG | 0.298348 | 8.4:-66800204 | MS.gene056815:CDS |
| TGTTCATTGCACTTCTTGTT+TGG | 0.302432 | 8.4:-66802032 | MS.gene056815:CDS |
| TGTAGAACTCAACTTCTCTA+AGG | 0.307385 | 8.4:-66799981 | MS.gene056815:CDS |
| ACTTCCTGCCTCATTTGTTT+AGG | 0.308433 | 8.4:+66798531 | None:intergenic |
| GGAGAGATATCTTTGCTTGC+TGG | 0.309354 | 8.4:-66800241 | MS.gene056815:CDS |
| TCAATCTATAATAAGGTTAT+TGG | 0.310440 | 8.4:-66802598 | MS.gene056815:CDS |
| AACCGTCCAATGCTTGTAAA+AGG | 0.316685 | 8.4:-66802099 | MS.gene056815:CDS |
| ATGTAGAGACCTTAAGTAAT+TGG | 0.323349 | 8.4:+66799545 | None:intergenic |
| TCTCTAATGATTGAGATAAA+TGG | 0.323507 | 8.4:+66799369 | None:intergenic |
| GCATTCGTGTTATGATCAAT+AGG | 0.324415 | 8.4:+66798991 | None:intergenic |
| GTTGCATCCATTTGTTCATC+TGG | 0.328145 | 8.4:-66798510 | MS.gene056815:CDS |
| TCCTAAGGTTCTTACAATCT+AGG | 0.337184 | 8.4:-66800048 | MS.gene056815:CDS |
| GTGAGGCTCAATCTATAATA+AGG | 0.341776 | 8.4:-66802605 | MS.gene056815:CDS |
| ATCTAGGCGCGGTGTTCGTT+TGG | 0.341838 | 8.4:-66800032 | MS.gene056815:CDS |
| TGAGGATGAATTGAGCTATC+TGG | 0.343149 | 8.4:+66799162 | None:intergenic |
| AGTCTTGTTAATAGCTACTT+TGG | 0.343222 | 8.4:-66802309 | MS.gene056815:CDS |
| AACTCCCACACTTGACCCTT+TGG | 0.344763 | 8.4:+66798566 | None:intergenic |
| CAAATTTGATACTCCAACTT+TGG | 0.350831 | 8.4:+66800267 | None:intergenic |
| ATATCTGTTGAAGGTCCTTA+TGG | 0.351254 | 8.4:-66799579 | MS.gene056815:CDS |
| AGTTGTATAGTGTGGGAATA+TGG | 0.354213 | 8.4:-66801192 | MS.gene056815:CDS |
| TCAGATGGTGTGCCAGAAAT+TGG | 0.358464 | 8.4:+66799243 | None:intergenic |
| CTTTCAAATCCTTCGCCTAT+CGG | 0.368684 | 8.4:-66799612 | MS.gene056815:CDS |
| TAATGATCCCGATTATAATA+AGG | 0.373252 | 8.4:+66799031 | None:intergenic |
| TTGGTGGTGCTGTTGTTTCT+GGG | 0.377746 | 8.4:-66802579 | MS.gene056815:CDS |
| TTGTGATGTATGCCTCAATT+TGG | 0.378153 | 8.4:+66799202 | None:intergenic |
| GTCTTGTTAATAGCTACTTT+GGG | 0.378957 | 8.4:-66802308 | MS.gene056815:CDS |
| AATATTCTCGGATCCTTTAA+GGG | 0.379920 | 8.4:-66798968 | MS.gene056815:CDS |
| TTTAGATTGAAAGTATTTGT+AGG | 0.383540 | 8.4:+66802531 | None:intergenic |
| GGAATATGGTTAGGTCTTGT+TGG | 0.389598 | 8.4:-66801178 | MS.gene056815:CDS |
| GAAGAAATTAGGACAATGTT+TGG | 0.390489 | 8.4:+66799309 | None:intergenic |
| ATTGGTGCATCTGTTGGATT+TGG | 0.390986 | 8.4:+66799123 | None:intergenic |
| CTGCTTCAACCAATTACTTA+AGG | 0.392561 | 8.4:-66799554 | MS.gene056815:intron |
| CTCAACTTCTCTAAGGGAAA+TGG | 0.415714 | 8.4:-66799974 | MS.gene056815:intron |
| TTTGCACAATCAGTCGTAAT+GGG | 0.416566 | 8.4:-66802146 | MS.gene056815:intron |
| CATTCGTGTTATGATCAATA+GGG | 0.417674 | 8.4:+66798992 | None:intergenic |
| AGCAAAACAGATTCAGAACT+TGG | 0.419463 | 8.4:-66798860 | MS.gene056815:CDS |
| TCTTGTTGGGAACATATGTT+TGG | 0.419914 | 8.4:-66801164 | MS.gene056815:CDS |
| TAGGTCCGAACAGTTGGCTT+TGG | 0.421352 | 8.4:-66799089 | MS.gene056815:CDS |
| TCAGAAGTGAGGCCAAATAT+TGG | 0.428860 | 8.4:+66801100 | None:intergenic |
| TCATTAAATGTGGAGGAACT+TGG | 0.429047 | 8.4:-66799656 | MS.gene056815:CDS |
| GAGGCTACCAATGTGCATTA+TGG | 0.431168 | 8.4:-66798751 | MS.gene056815:CDS |
| TCATCTTCCTTATTATAATC+GGG | 0.431320 | 8.4:-66799038 | MS.gene056815:CDS |
| GAATTTGTTACATCATCCAT+TGG | 0.432515 | 8.4:-66801015 | MS.gene056815:CDS |
| GCCTCAACAAGGGACTGATA+TGG | 0.440457 | 8.4:+66798769 | None:intergenic |
| GGCTTAAACCATAAAGTTTG+AGG | 0.443987 | 8.4:+66799144 | None:intergenic |
| ATCAAGTATCATATTTGGCT+TGG | 0.445757 | 8.4:-66801070 | MS.gene056815:CDS |
| CCGAACAGTTGGCTTTGGCT+TGG | 0.446107 | 8.4:-66799084 | MS.gene056815:CDS |
| AACTAAACCAGATGAACAAA+TGG | 0.451085 | 8.4:+66798503 | None:intergenic |
| TGCTTGCTGGTTTGTTCCTG+TGG | 0.451945 | 8.4:-66800228 | MS.gene056815:CDS |
| GCACCAATACATGCTATGTT+AGG | 0.454540 | 8.4:-66799108 | MS.gene056815:CDS |
| GCGAAGGATTTGAAAGCAAC+TGG | 0.456692 | 8.4:+66799619 | None:intergenic |
| TAATATTCAACTCCAAATTG+AGG | 0.460431 | 8.4:-66799214 | MS.gene056815:CDS |
| CACATATTACTAGCATGTTA+AGG | 0.465146 | 8.4:+66798941 | None:intergenic |
| TTTATGAACATCACACTTGT+GGG | 0.467830 | 8.4:+66799762 | None:intergenic |
| AAGCATTGGACGGTTCCATA+TGG | 0.468549 | 8.4:+66802107 | None:intergenic |
| AAAGTAGCTATTAACAAGAC+TGG | 0.468699 | 8.4:+66802311 | None:intergenic |
| GAATATGGTTAGGTCTTGTT+GGG | 0.469125 | 8.4:-66801177 | MS.gene056815:CDS |
| GCAAGAGAAGTTGTATAGTG+TGG | 0.469438 | 8.4:-66801200 | MS.gene056815:CDS |
| CGCCTTGGAATATCTGTTGA+AGG | 0.470730 | 8.4:-66799588 | MS.gene056815:CDS |
| AGACTGGAAAAGTGTACATA+AGG | 0.479175 | 8.4:+66802327 | None:intergenic |
| AATTTGTTACATCATCCATT+GGG | 0.484395 | 8.4:-66801014 | MS.gene056815:CDS |
| CTTAAGTAATTGGTTGAAGC+AGG | 0.487443 | 8.4:+66799555 | None:intergenic |
| GCCTAGATTGTAAGAACCTT+AGG | 0.488391 | 8.4:+66800047 | None:intergenic |
| TATAGTGTGGGAATATGGTT+AGG | 0.492943 | 8.4:-66801187 | MS.gene056815:CDS |
| TTGGTTGAAGCAGGTCCATA+AGG | 0.493515 | 8.4:+66799564 | None:intergenic |
| CATTGCAACTTTGATATGCT+TGG | 0.494130 | 8.4:+66799735 | None:intergenic |
| CCTTCGCCTATCGGTCGCCT+TGG | 0.496053 | 8.4:-66799603 | MS.gene056815:CDS |
| TAACACGAATGCAATATTCT+CGG | 0.497622 | 8.4:-66798980 | MS.gene056815:CDS |
| ACCAAGAAGAGGTAGAAACT+AGG | 0.499474 | 8.4:+66800079 | None:intergenic |
| GTTGGAGTATCAAATTTGGC+TGG | 0.503021 | 8.4:-66800262 | MS.gene056815:CDS |
| CCAAGAAGAGGTAGAAACTA+GGG | 0.503705 | 8.4:+66800080 | None:intergenic |
| GCATTGTAAATCATTGAACT+TGG | 0.506002 | 8.4:+66798814 | None:intergenic |
| TCTTGGTTGATCGTTTCCTA+AGG | 0.507895 | 8.4:-66800063 | MS.gene056815:CDS |
| GACTTCTATTTGAAACCAAA+GGG | 0.508764 | 8.4:-66798581 | MS.gene056815:CDS |
| ATCTATAATAAGGTTATTGG+TGG | 0.512827 | 8.4:-66802595 | MS.gene056815:CDS |
| AGAAACATGGGACAACCATA+TGG | 0.513216 | 8.4:-66802122 | MS.gene056815:CDS |
| ATATTTGGCCTCACTTCTGA+AGG | 0.519844 | 8.4:-66801097 | MS.gene056815:CDS |
| GCATGTATTGGTGCATCTGT+TGG | 0.519927 | 8.4:+66799117 | None:intergenic |
| ATTTATGAACATCACACTTG+TGG | 0.520791 | 8.4:+66799761 | None:intergenic |
| CAAGAGAAGTTGTATAGTGT+GGG | 0.522227 | 8.4:-66801199 | MS.gene056815:CDS |
| GGACTTCTATTTGAAACCAA+AGG | 0.525760 | 8.4:-66798582 | MS.gene056815:CDS |
| AGGGAGCATAGTGAAGGAAA+AGG | 0.527997 | 8.4:+66800099 | None:intergenic |
| CTATGTTAGGTCCGAACAGT+TGG | 0.533826 | 8.4:-66799095 | MS.gene056815:CDS |
| GGACCTAACATAGCATGTAT+TGG | 0.537777 | 8.4:+66799105 | None:intergenic |
| GATATTCCAAGGCGACCGAT+AGG | 0.539195 | 8.4:+66799597 | None:intergenic |
| TCCATATCAGTCCCTTGTTG+AGG | 0.540075 | 8.4:-66798770 | MS.gene056815:CDS |
| CTAAGTGTTGTCATTAAATG+TGG | 0.546157 | 8.4:-66799666 | MS.gene056815:CDS |
| CCAAGCCAAAGCCAACTGTT+CGG | 0.546202 | 8.4:+66799084 | None:intergenic |
| TTTCAGGACCTAAACAAATG+AGG | 0.546452 | 8.4:-66798539 | MS.gene056815:CDS |
| ATGTTGATATGGACCAAAGT+TGG | 0.550286 | 8.4:-66800280 | MS.gene056815:CDS |
| AAACAGATTCAGAACTTGGA+AGG | 0.552197 | 8.4:-66798856 | MS.gene056815:CDS |
| ACAGATGATCCACGTGTCAC+CGG | 0.553412 | 8.4:+66801127 | None:intergenic |
| TGGGAATGGTTGCAATCCAC+AGG | 0.556841 | 8.4:+66800212 | None:intergenic |
| AATAAGGAAGATGATGAATG+AGG | 0.557884 | 8.4:+66799047 | None:intergenic |
| AGTCGTAATGGGAAGAAACA+TGG | 0.559139 | 8.4:-66802135 | MS.gene056815:CDS |
| GTAGAACTCAACTTCTCTAA+GGG | 0.563199 | 8.4:-66799980 | MS.gene056815:CDS |
| AGGACCTAAACAAATGAGGC+AGG | 0.570464 | 8.4:-66798535 | MS.gene056815:CDS |
| TTGGCTTGGACACATGCTCA+TGG | 0.581558 | 8.4:-66801056 | MS.gene056815:CDS |
| GTGATGGTGAGTGGAGGAAG+TGG | 0.581992 | 8.4:-66799399 | MS.gene056815:CDS |
| CAAGCATATCAAAGTTGCAA+TGG | 0.585060 | 8.4:-66799734 | MS.gene056815:CDS |
| ATGCTTGTAAAAGGACCACT+TGG | 0.586115 | 8.4:-66802090 | MS.gene056815:CDS |
| CAATTTACTATTAGAAGTAA+CGG | 0.590987 | 8.4:+66799701 | None:intergenic |
| TTTGATTAGTAGATGCCCAA+TGG | 0.593677 | 8.4:+66800999 | None:intergenic |
| GACCTTCAACAGATATTCCA+AGG | 0.601000 | 8.4:+66799586 | None:intergenic |
| CCAAGGCGACCGATAGGCGA+AGG | 0.603236 | 8.4:+66799603 | None:intergenic |
| TTTACAACTTATTTGCACAT+CGG | 0.603937 | 8.4:-66802006 | MS.gene056815:CDS |
| GCACATTGGTAGCCTCAACA+AGG | 0.605079 | 8.4:+66798758 | None:intergenic |
| ATGGTGTGCCAGAAATTGGT+AGG | 0.609058 | 8.4:+66799247 | None:intergenic |
| ATTGAACTTGGTGACACTGT+TGG | 0.609255 | 8.4:+66798826 | None:intergenic |
| GACACACTTGTGATGGTGAG+TGG | 0.610694 | 8.4:-66799408 | MS.gene056815:CDS |
| CCTTGTGCACCAAAATAGGT+AGG | 0.611441 | 8.4:+66802477 | None:intergenic |
| AGATGATAAAGATTATGTAG+AGG | 0.614233 | 8.4:+66800146 | None:intergenic |
| AGGTAGGATCAGCCTTGCCA+CGG | 0.616622 | 8.4:+66802493 | None:intergenic |
| TGAAACCAAAGGGTCAAGTG+TGG | 0.617853 | 8.4:-66798571 | MS.gene056815:CDS |
| GAAACCAAAGGGTCAAGTGT+GGG | 0.618828 | 8.4:-66798570 | MS.gene056815:CDS |
| TGAATATTAGAAATGTCAGA+TGG | 0.623920 | 8.4:+66799228 | None:intergenic |
| AGTGTTGTCATTAAATGTGG+AGG | 0.629491 | 8.4:-66799663 | MS.gene056815:CDS |
| AACAGATTCAGAACTTGGAA+GGG | 0.629507 | 8.4:-66798855 | MS.gene056815:CDS |
| GTTGCCTAAAATCCGTGGCA+AGG | 0.630628 | 8.4:-66802505 | MS.gene056815:CDS |
| GGAAACGATCAACCAAGAAG+AGG | 0.638587 | 8.4:+66800068 | None:intergenic |
| GTCGTAATGGGAAGAAACAT+GGG | 0.641838 | 8.4:-66802134 | MS.gene056815:CDS |
| ATCTACTAATCAAATGTCAG+AGG | 0.642524 | 8.4:-66800990 | MS.gene056815:intron |
| GAAACTAGGGAGCATAGTGA+AGG | 0.643522 | 8.4:+66800093 | None:intergenic |
| AAATGGTTGCCTAAAATCCG+TGG | 0.643527 | 8.4:-66802510 | MS.gene056815:CDS |
| TCTTTGACCATAATGCACAT+TGG | 0.644003 | 8.4:+66798744 | None:intergenic |
| CAACAAGGGACTGATATGGA+AGG | 0.645067 | 8.4:+66798773 | None:intergenic |
| GTGATAGAAACAATTCCAAG+TGG | 0.660807 | 8.4:+66802075 | None:intergenic |
| TGATGCAACCTTCAGAAGTG+AGG | 0.667104 | 8.4:+66801089 | None:intergenic |
| CAGGCATGACACACTTGTGA+TGG | 0.673949 | 8.4:-66799415 | MS.gene056815:CDS |
| TTGAGTTCTACACCTTCACA+AGG | 0.680447 | 8.4:+66799992 | None:intergenic |
| CACATTGGTAGCCTCAACAA+GGG | 0.692348 | 8.4:+66798759 | None:intergenic |
| AGGTTCTTACAATCTAGGCG+CGG | 0.708377 | 8.4:-66800043 | MS.gene056815:CDS |
| ACACTTGTGATGGTGAGTGG+AGG | 0.758886 | 8.4:-66799405 | MS.gene056815:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTCCTTATTAAAAAA+TGG | - | chr8.4:66800688-66800707 | MS.gene056815:intron | 10.0% |
| !!! | AATACAATATTTTTAGTAAT+TGG | + | chr8.4:66799632-66799651 | None:intergenic | 10.0% |
| !!! | TCTGTTTTTATTTTTTATTA+AGG | + | chr8.4:66799402-66799421 | None:intergenic | 10.0% |
| !! | ACAATATAAAGACAAAAATA+AGG | + | chr8.4:66800739-66800758 | None:intergenic | 15.0% |
| !! | TCAAATAAATTAATTCGAAT+AGG | + | chr8.4:66801161-66801180 | None:intergenic | 15.0% |
| !!! | AAATAATCTTGTTTACAAAA+AGG | - | chr8.4:66799235-66799254 | MS.gene056815:CDS | 15.0% |
| !!! | ACATTTTCCATTTTTTAATA+AGG | + | chr8.4:66800698-66800717 | None:intergenic | 15.0% |
| !!! | CTTTTATATATACTTCAAAT+TGG | + | chr8.4:66801572-66801591 | None:intergenic | 15.0% |
| !! | AAAAGTCAATATTCAATCTA+AGG | + | chr8.4:66800451-66800470 | None:intergenic | 20.0% |
| !! | AAGATTAATTATGAAGTTGA+CGG | + | chr8.4:66799432-66799451 | None:intergenic | 20.0% |
| !! | AATATTATCAGTTTGATTCT+TGG | - | chr8.4:66799350-66799369 | MS.gene056815:CDS | 20.0% |
| !! | ATCATCTTCCTTATTATAAT+CGG | - | chr8.4:66802037-66802056 | MS.gene056815:CDS | 20.0% |
| !! | CAAATACTTTCAATCTAAAA+TGG | - | chr8.4:66798549-66798568 | MS.gene056815:CDS | 20.0% |
| !! | CAATTTACTATTAGAAGTAA+CGG | + | chr8.4:66801378-66801397 | None:intergenic | 20.0% |
| !! | TAAATATTGAATTGCATTTG+TGG | - | chr8.4:66799546-66799565 | MS.gene056815:intron | 20.0% |
| !! | TCAATCTATAATAAGGTTAT+TGG | - | chr8.4:66798478-66798497 | MS.gene056815:CDS | 20.0% |
| !! | TCTTATCATACCTATTAATT+AGG | - | chr8.4:66799271-66799290 | MS.gene056815:CDS | 20.0% |
| !! | TGATTCAAAACCTAATTAAT+AGG | + | chr8.4:66799284-66799303 | None:intergenic | 20.0% |
| !! | TTAATCTTAATCTTACTCTT+GGG | + | chr8.4:66800185-66800204 | None:intergenic | 20.0% |
| !! | TTTAATCTTAATCTTACTCT+TGG | + | chr8.4:66800186-66800205 | None:intergenic | 20.0% |
| !!! | AGGAAAATTTTTATGTGAAT+TGG | + | chr8.4:66800678-66800697 | None:intergenic | 20.0% |
| !!! | ATCTCTAGAGAAAATATTTT+TGG | - | chr8.4:66802384-66802403 | MS.gene056815:intron | 20.0% |
| !!! | CATATAATTGTTCTTATTTC+AGG | - | chr8.4:66798717-66798736 | MS.gene056815:intron | 20.0% |
| !!! | GGAAAATTTTTATGTGAATT+GGG | + | chr8.4:66800677-66800696 | None:intergenic | 20.0% |
| !!! | TTTAGATTGAAAGTATTTGT+AGG | + | chr8.4:66798548-66798567 | None:intergenic | 20.0% |
| !!! | TTTATATTGTATTTAGCTCA+CGG | - | chr8.4:66800749-66800768 | MS.gene056815:intron | 20.0% |
| ! | AAATTAAATCACACGTAAGT+AGG | + | chr8.4:66800153-66800172 | None:intergenic | 25.0% |
| ! | AAGGTTAAACATCCTAATTA+CGG | - | chr8.4:66799508-66799527 | MS.gene056815:intron | 25.0% |
| ! | AATTAAATCACACGTAAGTA+GGG | + | chr8.4:66800152-66800171 | None:intergenic | 25.0% |
| ! | AATTAGAGTATAGCACAAAT+AGG | + | chr8.4:66798881-66798900 | None:intergenic | 25.0% |
| ! | AGATGATAAAGATTATGTAG+AGG | + | chr8.4:66800933-66800952 | None:intergenic | 25.0% |
| ! | AGTCAAAGCAAAACTTTATA+TGG | + | chr8.4:66800371-66800390 | None:intergenic | 25.0% |
| ! | ATCTATAATAAGGTTATTGG+TGG | - | chr8.4:66798481-66798500 | MS.gene056815:CDS | 25.0% |
| ! | ATTAGAGTATAGCACAAATA+GGG | + | chr8.4:66798880-66798899 | None:intergenic | 25.0% |
| ! | ATTTATTGCAGATGTTGATA+TGG | - | chr8.4:66800785-66800804 | MS.gene056815:intron | 25.0% |
| ! | CGTTACTTCTAATAGTAAAT+TGG | - | chr8.4:66801376-66801395 | MS.gene056815:intron | 25.0% |
| ! | GAGCTTAAAGAAATTACTTA+TGG | - | chr8.4:66801215-66801234 | MS.gene056815:intron | 25.0% |
| ! | TAAAACAGTCTCAAAAATAG+CGG | - | chr8.4:66799096-66799115 | MS.gene056815:CDS | 25.0% |
| ! | TAAACCTTAAAAATACCATG+TGG | - | chr8.4:66799470-66799489 | MS.gene056815:intron | 25.0% |
| ! | TAATATTCAACTCCAAATTG+AGG | - | chr8.4:66801862-66801881 | MS.gene056815:intron | 25.0% |
| ! | TAATGATCCCGATTATAATA+AGG | + | chr8.4:66802048-66802067 | None:intergenic | 25.0% |
| ! | TAGGATGTTTAACCTTTAAT+AGG | + | chr8.4:66799504-66799523 | None:intergenic | 25.0% |
| ! | TCATCTTCCTTATTATAATC+GGG | - | chr8.4:66802038-66802057 | MS.gene056815:CDS | 25.0% |
| ! | TCTCTAATGATTGAGATAAA+TGG | + | chr8.4:66801710-66801729 | None:intergenic | 25.0% |
| ! | TCTGCAATAAATTAAAGTCA+TGG | + | chr8.4:66800777-66800796 | None:intergenic | 25.0% |
| ! | TGAATATTAGAAATGTCAGA+TGG | + | chr8.4:66801851-66801870 | None:intergenic | 25.0% |
| ! | TGTTCTTGAATGAAGAAATT+AGG | + | chr8.4:66801781-66801800 | None:intergenic | 25.0% |
| ! | TTATCTTAAAGTAAACTCGT+AGG | - | chr8.4:66801134-66801153 | MS.gene056815:CDS | 25.0% |
| ! | TTTACAACTTATTTGCACAT+CGG | - | chr8.4:66799070-66799089 | MS.gene056815:CDS | 25.0% |
| !! | AAAGAATTTTCTCCTAATTC+TGG | + | chr8.4:66800887-66800906 | None:intergenic | 25.0% |
| !! | AAGAATTTTCTCCTAATTCT+GGG | + | chr8.4:66800886-66800905 | None:intergenic | 25.0% |
| !! | CATAGCTTTTCACAATATTT+TGG | + | chr8.4:66799597-66799616 | None:intergenic | 25.0% |
| !! | TACATTTTCTTAGCAACAAA+AGG | + | chr8.4:66800235-66800254 | None:intergenic | 25.0% |
| !! | TTATATTGTATTTAGCTCAC+GGG | - | chr8.4:66800750-66800769 | MS.gene056815:intron | 25.0% |
| !! | TTGAATCAATCAGTTTTACT+TGG | - | chr8.4:66802609-66802628 | MS.gene056815:CDS | 25.0% |
| !!! | AATGACTTACTTTTAAGATC+AGG | + | chr8.4:66802358-66802377 | None:intergenic | 25.0% |
| !!! | AATGTGATATGTTTTTTGCA+GGG | - | chr8.4:66801279-66801298 | MS.gene056815:intron | 25.0% |
| !!! | AATTTGTTACATCATCCATT+GGG | - | chr8.4:66800062-66800081 | MS.gene056815:CDS | 25.0% |
| !!! | ACATGGTATTTTTAAGGTTT+AGG | + | chr8.4:66799471-66799490 | None:intergenic | 25.0% |
| !!! | ATTTTTAAGGTTTAGGTCTT+TGG | + | chr8.4:66799464-66799483 | None:intergenic | 25.0% |
| !!! | CACTCTTTTTTTTTTTCAAC+AGG | - | chr8.4:66802473-66802492 | MS.gene056815:intron | 25.0% |
| !!! | TAATGTGATATGTTTTTTGC+AGG | - | chr8.4:66801278-66801297 | MS.gene056815:intron | 25.0% |
| !!! | TTCTGGGTTTTATTATGATT+TGG | - | chr8.4:66798513-66798532 | MS.gene056815:CDS | 25.0% |
| !!! | TTTTTAAGGTTTAGGTCTTT+GGG | + | chr8.4:66799463-66799482 | None:intergenic | 25.0% |
| AAAGTAGCTATTAACAAGAC+TGG | + | chr8.4:66798768-66798787 | None:intergenic | 30.0% | |
| AAATAGGGACAACTAGATTA+AGG | + | chr8.4:66798865-66798884 | None:intergenic | 30.0% | |
| AACTAAACCAGATGAACAAA+TGG | + | chr8.4:66802576-66802595 | None:intergenic | 30.0% | |
| AATAAGGAAGATGATGAATG+AGG | + | chr8.4:66802032-66802051 | None:intergenic | 30.0% | |
| AATATTCTCGGATCCTTTAA+GGG | - | chr8.4:66802108-66802127 | MS.gene056815:CDS | 30.0% | |
| AGATCACTCACTAATTAAAG+AGG | + | chr8.4:66800533-66800552 | None:intergenic | 30.0% | |
| ATAGTTGAAGAAACAACGTA+TGG | - | chr8.4:66799656-66799675 | MS.gene056815:CDS | 30.0% | |
| ATCAAGTATCATATTTGGCT+TGG | - | chr8.4:66800006-66800025 | MS.gene056815:CDS | 30.0% | |
| ATCTACTAATCAAATGTCAG+AGG | - | chr8.4:66800086-66800105 | MS.gene056815:CDS | 30.0% | |
| ATGTAGAGACCTTAAGTAAT+TGG | + | chr8.4:66801534-66801553 | None:intergenic | 30.0% | |
| ATTTATGAACATCACACTTG+TGG | + | chr8.4:66801318-66801337 | None:intergenic | 30.0% | |
| CAAATTTGATACTCCAACTT+TGG | + | chr8.4:66800812-66800831 | None:intergenic | 30.0% | |
| CAATTCATCCTCAAACTTTA+TGG | - | chr8.4:66801924-66801943 | MS.gene056815:intron | 30.0% | |
| CACATATTACTAGCATGTTA+AGG | + | chr8.4:66802138-66802157 | None:intergenic | 30.0% | |
| CATTCGTGTTATGATCAATA+GGG | + | chr8.4:66802087-66802106 | None:intergenic | 30.0% | |
| CTATTAGAAGTAACGGTAAA+TGG | + | chr8.4:66801371-66801390 | None:intergenic | 30.0% | |
| CTTGGAGTTGTCTATATAAA+AGG | - | chr8.4:66799368-66799387 | MS.gene056815:CDS | 30.0% | |
| GAAGAAATTAGGACAATGTT+TGG | + | chr8.4:66801770-66801789 | None:intergenic | 30.0% | |
| GCATTGTAAATCATTGAACT+TGG | + | chr8.4:66802265-66802284 | None:intergenic | 30.0% | |
| GTTGCATCAAGTATCATATT+TGG | - | chr8.4:66800001-66800020 | MS.gene056815:CDS | 30.0% | |
| TAAACATCCTAATTACGGTT+GGG | - | chr8.4:66799513-66799532 | MS.gene056815:intron | 30.0% | |
| TAACACGAATGCAATATTCT+CGG | - | chr8.4:66802096-66802115 | MS.gene056815:CDS | 30.0% | |
| TATTAACACTCCATGAACAA+TGG | - | chr8.4:66800564-66800583 | MS.gene056815:intron | 30.0% | |
| TGTGCTGTAATGTTATATTG+TGG | - | chr8.4:66799835-66799854 | MS.gene056815:intron | 30.0% | |
| TTAAAAATACCATGTGGTTG+TGG | - | chr8.4:66799476-66799495 | MS.gene056815:intron | 30.0% | |
| TTAAACATCCTAATTACGGT+TGG | - | chr8.4:66799512-66799531 | MS.gene056815:intron | 30.0% | |
| TTACAGATCACTTACTAAAG+AGG | + | chr8.4:66800595-66800614 | None:intergenic | 30.0% | |
| TTTATGAACATCACACTTGT+GGG | + | chr8.4:66801317-66801336 | None:intergenic | 30.0% | |
| ! | CAAAGTTGGAGTATCAAATT+TGG | - | chr8.4:66800810-66800829 | MS.gene056815:intron | 30.0% |
| ! | CTAAGTGTTGTCATTAAATG+TGG | - | chr8.4:66801410-66801429 | MS.gene056815:intron | 30.0% |
| ! | GACTTCTATTTGAAACCAAA+GGG | - | chr8.4:66802495-66802514 | MS.gene056815:CDS | 30.0% |
| ! | GTCTTGTTAATAGCTACTTT+GGG | - | chr8.4:66798768-66798787 | MS.gene056815:CDS | 30.0% |
| ! | TATATTGTATTTAGCTCACG+GGG | - | chr8.4:66800751-66800770 | MS.gene056815:intron | 30.0% |
| ! | TTTTATGTGAATTGGGCTTT+AGG | + | chr8.4:66800670-66800689 | None:intergenic | 30.0% |
| !! | ACAACCACATGGTATTTTTA+AGG | + | chr8.4:66799477-66799496 | None:intergenic | 30.0% |
| !! | AGTCTTGTTAATAGCTACTT+TGG | - | chr8.4:66798767-66798786 | MS.gene056815:CDS | 30.0% |
| !! | GAATTTGTTACATCATCCAT+TGG | - | chr8.4:66800061-66800080 | MS.gene056815:CDS | 30.0% |
| !!! | GCTCTCATTTGATGATTTTT+TGG | + | chr8.4:66798814-66798833 | None:intergenic | 30.0% |
| !!! | TTTGGCATTCTTGTTTTTTC+CGG | - | chr8.4:66799930-66799949 | MS.gene056815:intron | 30.0% |
| AAAAACCTTCATACCCCATA+AGG | - | chr8.4:66800474-66800493 | MS.gene056815:intron | 35.0% | |
| AAACAGATTCAGAACTTGGA+AGG | - | chr8.4:66802220-66802239 | MS.gene056815:intron | 35.0% | |
| AACAGATTCAGAACTTGGAA+GGG | - | chr8.4:66802221-66802240 | MS.gene056815:intron | 35.0% | |
| AATTAAAGAGGTCATTCTGC+TGG | + | chr8.4:66800521-66800540 | None:intergenic | 35.0% | |
| AGCAAAACAGATTCAGAACT+TGG | - | chr8.4:66802216-66802235 | MS.gene056815:intron | 35.0% | |
| AGTGTTGTCATTAAATGTGG+AGG | - | chr8.4:66801413-66801432 | MS.gene056815:intron | 35.0% | |
| AGTTGTATAGTGTGGGAATA+TGG | - | chr8.4:66799884-66799903 | MS.gene056815:intron | 35.0% | |
| ATATCGTTGCTAAGTGTTTG+AGG | + | chr8.4:66799156-66799175 | None:intergenic | 35.0% | |
| ATATCTGTTGAAGGTCCTTA+TGG | - | chr8.4:66801497-66801516 | MS.gene056815:intron | 35.0% | |
| ATCATCAAACCAACTCAAAC+GGG | + | chr8.4:66800270-66800289 | None:intergenic | 35.0% | |
| ATGAACGCAAGCATACAAAA+AGG | + | chr8.4:66798664-66798683 | None:intergenic | 35.0% | |
| ATGTTGATATGGACCAAAGT+TGG | - | chr8.4:66800796-66800815 | MS.gene056815:intron | 35.0% | |
| CAAGAGAAGTTGTATAGTGT+GGG | - | chr8.4:66799877-66799896 | MS.gene056815:intron | 35.0% | |
| CAAGCATATCAAAGTTGCAA+TGG | - | chr8.4:66801342-66801361 | MS.gene056815:intron | 35.0% | |
| CAATATTCTCGGATCCTTTA+AGG | - | chr8.4:66802107-66802126 | MS.gene056815:CDS | 35.0% | |
| CATCATCAAACCAACTCAAA+CGG | + | chr8.4:66800271-66800290 | None:intergenic | 35.0% | |
| CATTGCAACTTTGATATGCT+TGG | + | chr8.4:66801344-66801363 | None:intergenic | 35.0% | |
| CTGCTTCAACCAATTACTTA+AGG | - | chr8.4:66801522-66801541 | MS.gene056815:intron | 35.0% | |
| CTTAAGTAATTGGTTGAAGC+AGG | + | chr8.4:66801524-66801543 | None:intergenic | 35.0% | |
| CTTCTGTTTGTTCTTCTATC+AGG | - | chr8.4:66801642-66801661 | MS.gene056815:intron | 35.0% | |
| GATTGGACACTCGAATAAAT+CGG | - | chr8.4:66800421-66800440 | MS.gene056815:intron | 35.0% | |
| GATTTGATCCTACCAATTTC+TGG | - | chr8.4:66801821-66801840 | MS.gene056815:intron | 35.0% | |
| GCATTCGTGTTATGATCAAT+AGG | + | chr8.4:66802088-66802107 | None:intergenic | 35.0% | |
| GGCTTAAACCATAAAGTTTG+AGG | + | chr8.4:66801935-66801954 | None:intergenic | 35.0% | |
| GTAGAACTCAACTTCTCTAA+GGG | - | chr8.4:66801096-66801115 | MS.gene056815:CDS | 35.0% | |
| GTGAGGCTCAATCTATAATA+AGG | - | chr8.4:66798471-66798490 | MS.gene056815:CDS | 35.0% | |
| GTGATAGAAACAATTCCAAG+TGG | + | chr8.4:66799004-66799023 | None:intergenic | 35.0% | |
| TATACCTTGTGCACCAAAAT+AGG | + | chr8.4:66798606-66798625 | None:intergenic | 35.0% | |
| TATAGTGTGGGAATATGGTT+AGG | - | chr8.4:66799889-66799908 | MS.gene056815:intron | 35.0% | |
| TATCGTTGCTAAGTGTTTGA+GGG | + | chr8.4:66799155-66799174 | None:intergenic | 35.0% | |
| TCATCTGTGCTACCAATATT+TGG | - | chr8.4:66799964-66799983 | MS.gene056815:intron | 35.0% | |
| TCATTAAATGTGGAGGAACT+TGG | - | chr8.4:66801420-66801439 | MS.gene056815:intron | 35.0% | |
| TCCTAAGGTTCTTACAATCT+AGG | - | chr8.4:66801028-66801047 | MS.gene056815:CDS | 35.0% | |
| TCTTGTTGGGAACATATGTT+TGG | - | chr8.4:66799912-66799931 | MS.gene056815:intron | 35.0% | |
| TCTTTGACCATAATGCACAT+TGG | + | chr8.4:66802335-66802354 | None:intergenic | 35.0% | |
| TGTAGAACTCAACTTCTCTA+AGG | - | chr8.4:66801095-66801114 | MS.gene056815:CDS | 35.0% | |
| TGTTCATTGCACTTCTTGTT+TGG | - | chr8.4:66799044-66799063 | MS.gene056815:CDS | 35.0% | |
| TTGTGATGTATGCCTCAATT+TGG | + | chr8.4:66801877-66801896 | None:intergenic | 35.0% | |
| TTTCAGGACCTAAACAAATG+AGG | - | chr8.4:66802537-66802556 | MS.gene056815:CDS | 35.0% | |
| TTTGATTAGTAGATGCCCAA+TGG | + | chr8.4:66800080-66800099 | None:intergenic | 35.0% | |
| TTTGCACAATCAGTCGTAAT+GGG | - | chr8.4:66798930-66798949 | MS.gene056815:CDS | 35.0% | |
| ! | AAGTTGAACTGACTTCCTTA+TGG | + | chr8.4:66800492-66800511 | None:intergenic | 35.0% |
| ! | AGACTGGAAAAGTGTACATA+AGG | + | chr8.4:66798752-66798771 | None:intergenic | 35.0% |
| ! | AGTTGAACTGACTTCCTTAT+GGG | + | chr8.4:66800491-66800510 | None:intergenic | 35.0% |
| ! | ATGGCAATTTTCACAACTCA+TGG | - | chr8.4:66800039-66800058 | MS.gene056815:CDS | 35.0% |
| ! | GGACTTCTATTTGAAACCAA+AGG | - | chr8.4:66802494-66802513 | MS.gene056815:CDS | 35.0% |
| ! | TGTTCATGGAGTGTTAATAG+AGG | + | chr8.4:66800563-66800582 | None:intergenic | 35.0% |
| ! | TTTCAAGTGTAGCTGTCTTA+TGG | - | chr8.4:66802173-66802192 | MS.gene056815:intron | 35.0% |
| ! | TTTTGCACAATCAGTCGTAA+TGG | - | chr8.4:66798929-66798948 | MS.gene056815:CDS | 35.0% |
| !! | AGAGGTATTTCCATTGTTCA+TGG | + | chr8.4:66800577-66800596 | None:intergenic | 35.0% |
| !! | ATGACAACACTTAGCTTTTC+TGG | + | chr8.4:66801404-66801423 | None:intergenic | 35.0% |
| !! | GAATATGGTTAGGTCTTGTT+GGG | - | chr8.4:66799899-66799918 | MS.gene056815:intron | 35.0% |
| !! | TTTTCTCCTAATTCTGGGAA+TGG | + | chr8.4:66800881-66800900 | None:intergenic | 35.0% |
| AAATGGTTGCCTAAAATCCG+TGG | - | chr8.4:66798566-66798585 | MS.gene056815:CDS | 40.0% | |
| AACCGTCCAATGCTTGTAAA+AGG | - | chr8.4:66798977-66798996 | MS.gene056815:CDS | 40.0% | |
| AAGAGTTAACCCGTTTGAGT+TGG | - | chr8.4:66800258-66800277 | MS.gene056815:CDS | 40.0% | |
| ACCAAGAAGAGGTAGAAACT+AGG | + | chr8.4:66801000-66801019 | None:intergenic | 40.0% | |
| ACTTCCTGCCTCATTTGTTT+AGG | + | chr8.4:66802548-66802567 | None:intergenic | 40.0% | |
| AGAAACATGGGACAACCATA+TGG | - | chr8.4:66798954-66798973 | MS.gene056815:CDS | 40.0% | |
| ATATTTGGCCTCACTTCTGA+AGG | - | chr8.4:66799979-66799998 | MS.gene056815:CDS | 40.0% | |
| ATGCTTGTAAAAGGACCACT+TGG | - | chr8.4:66798986-66799005 | MS.gene056815:CDS | 40.0% | |
| ATGTTAAGGAACGCCCTTAA+AGG | + | chr8.4:66802124-66802143 | None:intergenic | 40.0% | |
| ATTGGTGCATCTGTTGGATT+TGG | + | chr8.4:66801956-66801975 | None:intergenic | 40.0% | |
| CCAAGAAGAGGTAGAAACTA+GGG | + | chr8.4:66800999-66801018 | None:intergenic | 40.0% | |
| CTTTCAAATCCTTCGCCTAT+CGG | - | chr8.4:66801464-66801483 | MS.gene056815:intron | 40.0% | |
| GACCTTCAACAGATATTCCA+AGG | + | chr8.4:66801493-66801512 | None:intergenic | 40.0% | |
| GCAAGAGAAGTTGTATAGTG+TGG | - | chr8.4:66799876-66799895 | MS.gene056815:intron | 40.0% | |
| GCACCAATACATGCTATGTT+AGG | - | chr8.4:66801968-66801987 | MS.gene056815:CDS | 40.0% | |
| GCCTAGATTGTAAGAACCTT+AGG | + | chr8.4:66801032-66801051 | None:intergenic | 40.0% | |
| GGACCTAACATAGCATGTAT+TGG | + | chr8.4:66801974-66801993 | None:intergenic | 40.0% | |
| GTGGTTGTGGTACCTATTAA+AGG | - | chr8.4:66799489-66799508 | MS.gene056815:intron | 40.0% | |
| GTTGCATCCATTTGTTCATC+TGG | - | chr8.4:66802566-66802585 | MS.gene056815:CDS | 40.0% | |
| TAATAGGTACCACAACCACA+TGG | + | chr8.4:66799488-66799507 | None:intergenic | 40.0% | |
| TCAAAAATAGCGGCAGAGTA+CGG | - | chr8.4:66799106-66799125 | MS.gene056815:CDS | 40.0% | |
| TCAGAAGTGAGGCCAAATAT+TGG | + | chr8.4:66799979-66799998 | None:intergenic | 40.0% | |
| TCTTGGTTGATCGTTTCCTA+AGG | - | chr8.4:66801013-66801032 | MS.gene056815:CDS | 40.0% | |
| TGAGGATGAATTGAGCTATC+TGG | + | chr8.4:66801917-66801936 | None:intergenic | 40.0% | |
| TTGAGTTCTACACCTTCACA+AGG | + | chr8.4:66801087-66801106 | None:intergenic | 40.0% | |
| TTGCAAACCCAACCGTAATT+AGG | + | chr8.4:66799523-66799542 | None:intergenic | 40.0% | |
| TTGCAACCATTCCCAGAATT+AGG | - | chr8.4:66800872-66800891 | MS.gene056815:intron | 40.0% | |
| ! | AAGGCTGATCCTACCTATTT+TGG | - | chr8.4:66798590-66798609 | MS.gene056815:intron | 40.0% |
| ! | AGTCGTAATGGGAAGAAACA+TGG | - | chr8.4:66798941-66798960 | MS.gene056815:CDS | 40.0% |
| ! | AGTGGTCCTTTTACAAGCAT+TGG | + | chr8.4:66798986-66799005 | None:intergenic | 40.0% |
| ! | ATTGAACTTGGTGACACTGT+TGG | + | chr8.4:66802253-66802272 | None:intergenic | 40.0% |
| ! | CTCAACTTCTCTAAGGGAAA+TGG | - | chr8.4:66801102-66801121 | MS.gene056815:CDS | 40.0% |
| ! | GGAATATGGTTAGGTCTTGT+TGG | - | chr8.4:66799898-66799917 | MS.gene056815:intron | 40.0% |
| ! | GTCGTAATGGGAAGAAACAT+GGG | - | chr8.4:66798942-66798961 | MS.gene056815:CDS | 40.0% |
| ! | GTTGAACTGACTTCCTTATG+GGG | + | chr8.4:66800490-66800509 | None:intergenic | 40.0% |
| ! | GTTGGAGTATCAAATTTGGC+TGG | - | chr8.4:66800814-66800833 | MS.gene056815:intron | 40.0% |
| ! | TCTCGTATTTTGCCTTGTGA+AGG | - | chr8.4:66801072-66801091 | MS.gene056815:CDS | 40.0% |
| !! | ATTGGGCTTTAGGCTAAGTA+AGG | + | chr8.4:66800660-66800679 | None:intergenic | 40.0% |
| !!! | GTCCTTTTACAAGCATTGGA+CGG | + | chr8.4:66798982-66799001 | None:intergenic | 40.0% |
| ACCCACTGAAATAGACATGC+TGG | + | chr8.4:66800344-66800363 | None:intergenic | 45.0% | |
| AGGACCTAAACAAATGAGGC+AGG | - | chr8.4:66802541-66802560 | MS.gene056815:CDS | 45.0% | |
| AGGTTCTTACAATCTAGGCG+CGG | - | chr8.4:66801033-66801052 | MS.gene056815:CDS | 45.0% | |
| ATGGTGTGCCAGAAATTGGT+AGG | + | chr8.4:66801832-66801851 | None:intergenic | 45.0% | |
| CAACAAGGGACTGATATGGA+AGG | + | chr8.4:66802306-66802325 | None:intergenic | 45.0% | |
| CCCACTGAAATAGACATGCT+GGG | + | chr8.4:66800343-66800362 | None:intergenic | 45.0% | |
| CCCAGCATGTCTATTTCAGT+GGG | - | chr8.4:66800340-66800359 | MS.gene056815:intron | 45.0% | |
| CCCTAGTTTCTACCTCTTCT+TGG | - | chr8.4:66800996-66801015 | MS.gene056815:CDS | 45.0% | |
| CCTTGTGCACCAAAATAGGT+AGG | + | chr8.4:66798602-66798621 | None:intergenic | 45.0% | |
| CGCCTTGGAATATCTGTTGA+AGG | - | chr8.4:66801488-66801507 | MS.gene056815:intron | 45.0% | |
| CTATGTTAGGTCCGAACAGT+TGG | - | chr8.4:66801981-66802000 | MS.gene056815:CDS | 45.0% | |
| GAAACCAAAGGGTCAAGTGT+GGG | - | chr8.4:66802506-66802525 | MS.gene056815:CDS | 45.0% | |
| GACTTCCTTATGGGGTATGA+AGG | + | chr8.4:66800482-66800501 | None:intergenic | 45.0% | |
| GAGGCTACCAATGTGCATTA+TGG | - | chr8.4:66802325-66802344 | MS.gene056815:CDS | 45.0% | |
| GCATGTCTATTTCAGTGGGT+TGG | - | chr8.4:66800344-66800363 | MS.gene056815:intron | 45.0% | |
| GCGAAGGATTTGAAAGCAAC+TGG | + | chr8.4:66801460-66801479 | None:intergenic | 45.0% | |
| GGAAACGATCAACCAAGAAG+AGG | + | chr8.4:66801011-66801030 | None:intergenic | 45.0% | |
| GGAGAGATATCTTTGCTTGC+TGG | - | chr8.4:66800835-66800854 | MS.gene056815:intron | 45.0% | |
| GTAAGTAGGGATCATCGTCT+TGG | + | chr8.4:66800139-66800158 | None:intergenic | 45.0% | |
| TCAGATGGTGTGCCAGAAAT+TGG | + | chr8.4:66801836-66801855 | None:intergenic | 45.0% | |
| TCCATATCAGTCCCTTGTTG+AGG | - | chr8.4:66802306-66802325 | MS.gene056815:CDS | 45.0% | |
| TCCCAGCATGTCTATTTCAG+TGG | - | chr8.4:66800339-66800358 | MS.gene056815:intron | 45.0% | |
| TGAAACCAAAGGGTCAAGTG+TGG | - | chr8.4:66802505-66802524 | MS.gene056815:CDS | 45.0% | |
| TGATGCAACCTTCAGAAGTG+AGG | + | chr8.4:66799990-66800009 | None:intergenic | 45.0% | |
| TTAAATGAGACCCCCACAAG+TGG | - | chr8.4:66800391-66800410 | MS.gene056815:intron | 45.0% | |
| TTGGTTGAAGCAGGTCCATA+AGG | + | chr8.4:66801515-66801534 | None:intergenic | 45.0% | |
| ! | AGGGAGCATAGTGAAGGAAA+AGG | + | chr8.4:66800980-66800999 | None:intergenic | 45.0% |
| ! | AGTGTGGGAGTTCTTGTTTC+AGG | - | chr8.4:66802521-66802540 | MS.gene056815:CDS | 45.0% |
| ! | CACATTGGTAGCCTCAACAA+GGG | + | chr8.4:66802320-66802339 | None:intergenic | 45.0% |
| ! | GAAACTAGGGAGCATAGTGA+AGG | + | chr8.4:66800986-66801005 | None:intergenic | 45.0% |
| ! | GCATGTATTGGTGCATCTGT+TGG | + | chr8.4:66801962-66801981 | None:intergenic | 45.0% |
| !! | AAGCATTGGACGGTTCCATA+TGG | + | chr8.4:66798972-66798991 | None:intergenic | 45.0% |
| !! | ATTGGTGGTGCTGTTGTTTC+TGG | - | chr8.4:66798496-66798515 | MS.gene056815:CDS | 45.0% |
| !! | TTGGTGGTGCTGTTGTTTCT+GGG | - | chr8.4:66798497-66798516 | MS.gene056815:CDS | 45.0% |
| !!! | CCTACCTATTTTGGTGCACA+AGG | - | chr8.4:66798599-66798618 | MS.gene056815:intron | 45.0% |
| !!! | TTGTTTTTTCCGGTGACACG+TGG | - | chr8.4:66799940-66799959 | MS.gene056815:intron | 45.0% |
| AACTCCCACACTTGACCCTT+TGG | + | chr8.4:66802513-66802532 | None:intergenic | 50.0% | |
| AATCTCACCGACCACTTGTG+GGG | + | chr8.4:66800405-66800424 | None:intergenic | 50.0% | |
| ACAGATGATCCACGTGTCAC+CGG | + | chr8.4:66799952-66799971 | None:intergenic | 50.0% | |
| CAATCTCACCGACCACTTGT+GGG | + | chr8.4:66800406-66800425 | None:intergenic | 50.0% | |
| CAGGCATGACACACTTGTGA+TGG | - | chr8.4:66801661-66801680 | MS.gene056815:intron | 50.0% | |
| CCAAGCCAAAGCCAACTGTT+CGG | + | chr8.4:66801995-66802014 | None:intergenic | 50.0% | |
| GATATTCCAAGGCGACCGAT+AGG | + | chr8.4:66801482-66801501 | None:intergenic | 50.0% | |
| GCCTCAACAAGGGACTGATA+TGG | + | chr8.4:66802310-66802329 | None:intergenic | 50.0% | |
| GTTGCCTAAAATCCGTGGCA+AGG | - | chr8.4:66798571-66798590 | MS.gene056815:CDS | 50.0% | |
| TGGGAATGGTTGCAATCCAC+AGG | + | chr8.4:66800867-66800886 | None:intergenic | 50.0% | |
| ! | ACACTTGTGATGGTGAGTGG+AGG | - | chr8.4:66801671-66801690 | MS.gene056815:intron | 50.0% |
| ! | GACACACTTGTGATGGTGAG+TGG | - | chr8.4:66801668-66801687 | MS.gene056815:intron | 50.0% |
| ! | GCACATTGGTAGCCTCAACA+AGG | + | chr8.4:66802321-66802340 | None:intergenic | 50.0% |
| ! | TAGGTCCGAACAGTTGGCTT+TGG | - | chr8.4:66801987-66802006 | MS.gene056815:CDS | 50.0% |
| ! | TCAGCCTTGCCACGGATTTT+AGG | + | chr8.4:66798578-66798597 | None:intergenic | 50.0% |
| !! | TGCTTGCTGGTTTGTTCCTG+TGG | - | chr8.4:66800848-66800867 | MS.gene056815:intron | 50.0% |
| !! | TTGGCTTGGACACATGCTCA+TGG | - | chr8.4:66800020-66800039 | MS.gene056815:CDS | 50.0% |
| AGAGGTCATTCTGCTGGCAG+CGG | + | chr8.4:66800515-66800534 | None:intergenic | 55.0% | |
| AGGTAGGATCAGCCTTGCCA+CGG | + | chr8.4:66798586-66798605 | None:intergenic | 55.0% | |
| ATCTAGGCGCGGTGTTCGTT+TGG | - | chr8.4:66801044-66801063 | MS.gene056815:CDS | 55.0% | |
| ATCTCACCGACCACTTGTGG+GGG | + | chr8.4:66800404-66800423 | None:intergenic | 55.0% | |
| ATGAGACCCCCACAAGTGGT+CGG | - | chr8.4:66800395-66800414 | MS.gene056815:intron | 55.0% | |
| CCAATCTCACCGACCACTTG+TGG | + | chr8.4:66800407-66800426 | None:intergenic | 55.0% | |
| CCACAAGTGGTCGGTGAGAT+TGG | - | chr8.4:66800404-66800423 | MS.gene056815:intron | 55.0% | |
| ! | GTGATGGTGAGTGGAGGAAG+TGG | - | chr8.4:66801677-66801696 | MS.gene056815:intron | 55.0% |
| !! | CCGAACAGTTGGCTTTGGCT+TGG | - | chr8.4:66801992-66802011 | MS.gene056815:CDS | 55.0% |
| CCAAGGCGACCGATAGGCGA+AGG | + | chr8.4:66801476-66801495 | None:intergenic | 65.0% | |
| CCTTCGCCTATCGGTCGCCT+TGG | - | chr8.4:66801473-66801492 | MS.gene056815:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 66798464 | 66802634 | 66798464 | ID=MS.gene056815 |
| chr8.4 | mRNA | 66798464 | 66802634 | 66798464 | ID=MS.gene056815.t1;Parent=MS.gene056815 |
| chr8.4 | exon | 66802478 | 66802634 | 66802478 | ID=MS.gene056815.t1.exon1;Parent=MS.gene056815.t1 |
| chr8.4 | CDS | 66802478 | 66802634 | 66802478 | ID=cds.MS.gene056815.t1;Parent=MS.gene056815.t1 |
| chr8.4 | exon | 66802254 | 66802359 | 66802254 | ID=MS.gene056815.t1.exon2;Parent=MS.gene056815.t1 |
| chr8.4 | CDS | 66802254 | 66802359 | 66802254 | ID=cds.MS.gene056815.t1;Parent=MS.gene056815.t1 |
| chr8.4 | exon | 66801961 | 66802155 | 66801961 | ID=MS.gene056815.t1.exon3;Parent=MS.gene056815.t1 |
| chr8.4 | CDS | 66801961 | 66802155 | 66801961 | ID=cds.MS.gene056815.t1;Parent=MS.gene056815.t1 |
| chr8.4 | exon | 66800991 | 66801225 | 66800991 | ID=MS.gene056815.t1.exon4;Parent=MS.gene056815.t1 |
| chr8.4 | CDS | 66800991 | 66801225 | 66800991 | ID=cds.MS.gene056815.t1;Parent=MS.gene056815.t1 |
| chr8.4 | exon | 66799975 | 66800302 | 66799975 | ID=MS.gene056815.t1.exon5;Parent=MS.gene056815.t1 |
| chr8.4 | CDS | 66799975 | 66800302 | 66799975 | ID=cds.MS.gene056815.t1;Parent=MS.gene056815.t1 |
| chr8.4 | exon | 66799555 | 66799798 | 66799555 | ID=MS.gene056815.t1.exon6;Parent=MS.gene056815.t1 |
| chr8.4 | CDS | 66799555 | 66799798 | 66799555 | ID=cds.MS.gene056815.t1;Parent=MS.gene056815.t1 |
| chr8.4 | exon | 66798731 | 66799434 | 66798731 | ID=MS.gene056815.t1.exon7;Parent=MS.gene056815.t1 |
| chr8.4 | CDS | 66798731 | 66799434 | 66798731 | ID=cds.MS.gene056815.t1;Parent=MS.gene056815.t1 |
| chr8.4 | exon | 66798464 | 66798603 | 66798464 | ID=MS.gene056815.t1.exon8;Parent=MS.gene056815.t1 |
| chr8.4 | CDS | 66798464 | 66798603 | 66798464 | ID=cds.MS.gene056815.t1;Parent=MS.gene056815.t1 |
| Gene Sequence |
| Protein sequence |
