AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057002

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057002.t1 MTR_2g099710 78.571 630 66 5 1 610 1 581 0.0 978
MS.gene057002.t1 MTR_8g072600 43.921 403 182 8 173 536 59 456 1.40e-107 333
MS.gene057002.t1 MTR_8g072600 44.898 294 128 4 173 434 59 350 3.26e-79 256
MS.gene057002.t1 MTR_3g452710 32.184 348 188 13 177 521 168 470 6.22e-42 159
MS.gene057002.t1 MTR_3g452710 32.184 348 188 13 177 521 235 537 1.76e-41 159
MS.gene057002.t1 MTR_2g100130 32.372 312 173 10 213 521 113 389 4.57e-38 146
MS.gene057002.t1 MTR_2g100160 32.000 350 189 14 176 521 104 408 5.92e-38 146
MS.gene057002.t1 MTR_2g100130 32.372 312 173 10 213 521 212 488 1.03e-37 147
MS.gene057002.t1 MTR_2g100130 32.372 312 173 10 213 521 183 459 1.09e-37 146
MS.gene057002.t1 MTR_2g100130 32.372 312 173 10 213 521 222 498 1.15e-37 147
MS.gene057002.t1 MTR_2g100130 32.993 294 159 9 213 503 222 480 1.76e-36 144
MS.gene057002.t1 MTR_2g100130 32.653 294 161 9 213 503 222 481 3.47e-36 143
MS.gene057002.t1 MTR_2g100130 32.993 294 159 9 213 503 183 441 3.69e-36 142
MS.gene057002.t1 MTR_1g079950 29.971 347 198 10 211 557 31 332 1.97e-35 137
MS.gene057002.t1 MTR_1g043240 31.153 321 166 10 211 514 31 313 8.72e-35 135
MS.gene057002.t1 MTR_7g107310 33.228 316 168 11 203 516 24 298 9.66e-35 134
MS.gene057002.t1 MTR_2g100130 33.456 272 148 8 213 481 222 463 1.16e-34 138
MS.gene057002.t1 MTR_1g079950 30.719 306 173 8 211 516 31 297 1.56e-34 134
MS.gene057002.t1 MTR_1g079950 30.719 306 173 8 211 516 31 297 1.84e-34 134
MS.gene057002.t1 MTR_1g079950 30.599 317 178 9 211 527 60 334 4.92e-34 133
MS.gene057002.t1 MTR_7g116380 30.392 306 174 8 211 516 31 297 1.03e-33 132
MS.gene057002.t1 MTR_7g116380 30.392 306 174 8 211 516 31 297 1.29e-33 131
MS.gene057002.t1 MTR_8g085610 32.911 316 169 11 203 516 19 293 1.45e-33 131
MS.gene057002.t1 MTR_8g085610 33.443 305 160 11 214 516 6 269 1.98e-33 130
MS.gene057002.t1 MTR_5g081230 30.392 306 174 9 211 516 48 314 4.56e-33 130
MS.gene057002.t1 MTR_8g005010 30.742 283 155 8 214 494 32 275 1.06e-32 128
MS.gene057002.t1 MTR_1g079950 30.938 320 181 9 238 557 27 306 4.71e-32 127
MS.gene057002.t1 MTR_1g074880 30.996 271 154 6 211 481 31 268 1.26e-31 125
MS.gene057002.t1 MTR_1g074880 30.996 271 154 6 211 481 31 268 1.28e-31 125
MS.gene057002.t1 MTR_8g062430 33.096 281 151 9 203 481 17 262 1.35e-31 125
MS.gene057002.t1 MTR_8g098980 27.761 335 198 10 184 516 6 298 2.74e-31 125
MS.gene057002.t1 MTR_5g037200 32.740 281 152 9 203 481 17 262 1.49e-30 122
MS.gene057002.t1 MTR_1g074880 33.610 241 132 6 241 481 1 213 1.64e-30 121
MS.gene057002.t1 MTR_1g074880 33.610 241 132 6 241 481 1 213 2.45e-30 120
MS.gene057002.t1 MTR_7g112870 29.154 319 172 10 211 518 33 308 2.69e-30 122
MS.gene057002.t1 MTR_1g089370 33.115 305 165 10 187 481 529 804 1.53e-29 125
MS.gene057002.t1 MTR_5g093990 31.621 253 144 7 230 481 36 260 5.36e-27 112
MS.gene057002.t1 MTR_5g037200 42.763 152 77 4 211 361 25 167 1.24e-26 108
MS.gene057002.t1 MTR_2g087530 29.412 323 183 11 187 498 645 933 1.75e-25 112
MS.gene057002.t1 MTR_2g087530 29.412 323 183 11 187 498 532 820 2.15e-25 112
MS.gene057002.t1 MTR_1g039380 31.618 272 146 10 214 481 24 259 2.71e-25 107
MS.gene057002.t1 MTR_4g050540 29.321 324 182 12 187 498 650 938 4.17e-25 111
MS.gene057002.t1 MTR_1g039380 32.530 249 133 9 237 481 18 235 4.59e-25 105
MS.gene057002.t1 MTR_7g066570 63.235 68 25 0 543 610 483 550 1.53e-17 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057002.t1 AT5G63870 47.891 403 174 7 171 540 9 408 7.67e-118 358
MS.gene057002.t1 AT5G63870 47.891 403 174 7 171 540 9 408 7.67e-118 358
MS.gene057002.t1 AT5G10900 35.781 640 322 14 9 633 37 602 1.70e-117 364
MS.gene057002.t1 AT5G10900 35.793 637 320 14 9 630 37 599 3.32e-117 363
MS.gene057002.t1 AT5G10900 35.514 642 306 14 9 633 37 587 2.68e-115 358
MS.gene057002.t1 AT5G63870 48.276 290 124 3 171 434 9 298 2.04e-83 265
MS.gene057002.t1 AT1G48120 44.250 400 170 9 160 517 576 964 4.41e-83 286
MS.gene057002.t1 AT2G42810 32.948 346 184 13 179 521 172 472 3.33e-42 160
MS.gene057002.t1 AT2G42810 32.948 346 184 13 179 521 172 472 3.33e-42 160
MS.gene057002.t1 AT2G42810 32.948 346 184 13 179 521 172 472 3.33e-42 160
MS.gene057002.t1 AT2G42810 32.948 346 184 13 179 521 226 526 1.39e-41 159
MS.gene057002.t1 AT2G42810 32.948 346 184 13 179 521 225 525 1.45e-41 159
MS.gene057002.t1 AT5G43380 31.611 329 164 10 211 521 31 316 1.11e-35 137
MS.gene057002.t1 AT5G43380 31.611 329 164 10 211 521 31 316 1.12e-35 137
MS.gene057002.t1 AT5G43380 31.611 329 164 10 211 521 31 316 1.22e-35 137
MS.gene057002.t1 AT2G42500 33.228 316 168 11 203 516 24 298 4.82e-35 135
MS.gene057002.t1 AT3G58500 32.595 316 170 11 203 516 24 298 5.62e-34 132
MS.gene057002.t1 AT2G39840 30.619 307 172 9 211 516 45 311 2.00e-33 131
MS.gene057002.t1 AT5G59160 31.373 306 171 9 211 516 41 307 3.14e-32 127
MS.gene057002.t1 AT5G59160 31.373 306 171 9 211 516 41 307 3.14e-32 127
MS.gene057002.t1 AT5G59160 31.373 306 171 9 211 516 41 307 3.14e-32 127
MS.gene057002.t1 AT3G05580 29.861 288 157 8 211 494 37 283 4.24e-32 127
MS.gene057002.t1 AT2G29400 29.870 308 172 11 211 516 48 313 6.06e-32 126
MS.gene057002.t1 AT1G64040 30.183 328 167 11 211 528 32 307 1.15e-31 126
MS.gene057002.t1 AT1G10430 33.452 281 150 9 203 481 17 262 6.73e-31 123
MS.gene057002.t1 AT1G10430 33.452 281 150 9 203 481 17 262 6.73e-31 123
MS.gene057002.t1 AT3G05580 32.000 225 138 5 211 435 37 246 1.50e-30 121
MS.gene057002.t1 AT5G27840 30.000 290 154 9 211 494 37 283 2.02e-30 122
MS.gene057002.t1 AT1G59830 33.704 270 142 9 214 481 28 262 2.31e-30 122
MS.gene057002.t1 AT5G27840 30.000 290 154 9 211 494 37 283 2.66e-30 122
MS.gene057002.t1 AT5G27840 29.167 288 159 7 211 494 37 283 2.81e-30 122
MS.gene057002.t1 AT5G27840 29.167 288 159 7 211 494 37 283 2.81e-30 122
MS.gene057002.t1 AT1G69960 32.143 280 155 8 203 481 18 263 4.44e-30 121
MS.gene057002.t1 AT1G59830 37.054 224 122 7 214 435 28 234 1.65e-29 118
MS.gene057002.t1 AT4G11240 27.914 326 183 10 193 516 23 298 3.79e-29 119
MS.gene057002.t1 AT4G26720 31.250 288 163 9 230 516 36 289 2.70e-28 115
MS.gene057002.t1 AT3G46820 29.412 306 177 9 211 516 41 307 4.52e-27 112
MS.gene057002.t1 AT4G03080 31.348 319 176 11 190 498 534 819 5.58e-27 117
MS.gene057002.t1 AT5G55260 29.073 313 182 9 203 514 14 287 6.86e-27 112
MS.gene057002.t1 AT1G03445 28.852 305 177 8 187 481 457 731 1.06e-26 116
MS.gene057002.t1 AT1G03445 28.852 305 177 8 187 481 457 731 1.06e-26 116
MS.gene057002.t1 AT2G42500 32.932 249 132 8 269 516 37 251 1.15e-26 110
MS.gene057002.t1 AT1G50370 31.618 272 146 10 214 481 24 259 3.37e-25 107
MS.gene057002.t1 AT3G19980 31.618 272 146 10 214 481 24 259 4.35e-25 106
MS.gene057002.t1 AT2G27210 29.630 324 181 12 187 498 656 944 1.03e-24 110
MS.gene057002.t1 AT2G27210 29.630 324 181 12 187 498 651 939 1.04e-24 110
MS.gene057002.t1 AT1G08420 29.630 324 181 12 187 498 667 955 2.68e-24 109
MS.gene057002.t1 AT1G08420 29.630 324 181 12 187 498 662 950 2.82e-24 108
MS.gene057002.t1 AT2G42500 39.860 143 77 3 211 351 32 167 1.13e-23 99.0
MS.gene057002.t1 AT2G42500 40.426 141 75 3 211 349 32 165 1.94e-23 98.2
MS.gene057002.t1 AT2G42500 40.141 142 76 3 211 350 32 166 3.92e-23 97.4
MS.gene057002.t1 AT5G55260 25.706 354 182 10 203 514 14 328 2.30e-20 93.6

Find 151 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCAAAATATGTATTATT+TGG 0.158288 2.1:+4935668 None:intergenic
CTTAAAGAAACATAGTTTAA+AGG 0.172739 2.1:-4935698 MS.gene057002:CDS
CTCTGTGTCTTCTTCCGTTT+TGG 0.192424 2.1:+4935909 None:intergenic
TTCCACTGAAAACATAAAAT+TGG 0.226054 2.1:+4936481 None:intergenic
TTCGCTTTGATTGCCATATT+TGG 0.235754 2.1:+4936061 None:intergenic
GCGATGCAACATTGAGAAAA+TGG 0.254573 2.1:-4937854 MS.gene057002:intron
AGGAATCAATTCAATGTCTT+TGG 0.280788 2.1:-4938093 None:intergenic
TGAAGTATTCTTGGTCTTGC+TGG 0.281613 2.1:-4936430 MS.gene057002:CDS
TTGGGGCGTTGAAGTATTCT+TGG 0.290241 2.1:-4936439 MS.gene057002:CDS
GGTAATGCAGGTCGAAAATT+AGG 0.298037 2.1:-4935754 MS.gene057002:CDS
CACGCAGTTTGGTTCCTTAC+GGG 0.331335 2.1:+4936614 None:intergenic
AAGGAGGTGCAGACCAAATA+TGG 0.332204 2.1:-4936074 MS.gene057002:CDS
AGCATCCCCATTGCAGATCT+TGG 0.332542 2.1:+4936917 None:intergenic
TATTTGTTCGAGCTCGTTGC+TGG 0.341974 2.1:-4931075 MS.gene057002:CDS
GTGTATCCTTGTCTTGGTTT+TGG 0.343605 2.1:-4933274 MS.gene057002:CDS
AGTGGAAATTATGTAGATAA+AGG 0.355514 2.1:-4936465 MS.gene057002:CDS
CAATTAATCTCCACGCAGTT+TGG 0.359281 2.1:+4936603 None:intergenic
AGGGCTGGAAGGGATGGTTT+TGG 0.359468 2.1:-4935005 MS.gene057002:CDS
TAATGACTCGAAGTCAAATT+CGG 0.360599 2.1:+4931314 None:intergenic
TATTCTTGGTCTTGCTGGCT+TGG 0.367697 2.1:-4936425 MS.gene057002:CDS
CACTCAATAATATATTAATT+AGG 0.368398 2.1:+4935818 None:intergenic
TCAATCCAGGAGCTGAGAAC+AGG 0.370642 2.1:-4930814 MS.gene057002:intron
TCCCTTCCAGCCCTTGCATC+TGG 0.375379 2.1:+4935014 None:intergenic
TCCCAGGTGTATCCTTGTCT+TGG 0.378385 2.1:-4933280 MS.gene057002:intron
TATTATTGAGTGACATTCTC+TGG 0.381034 2.1:-4935807 MS.gene057002:CDS
CTCAGACCATCTCTGTTAGA+TGG 0.381753 2.1:+4935778 None:intergenic
GTTCAACTTCCGGATGGTTC+AGG 0.388202 2.1:-4931264 MS.gene057002:CDS
GGCAGTGATCACGTCATTCT+TGG 0.391710 2.1:+4937879 None:intergenic
AATTTAACCTGCGGGTAGTC+TGG 0.398196 2.1:+4934912 None:intergenic
CCACGCAGTTTGGTTCCTTA+CGG 0.403806 2.1:+4936613 None:intergenic
CCTTCCACCGAAGGAGCTCT+TGG 0.405522 2.1:+4931219 None:intergenic
TTATGTAGATAAAGGAGCTT+GGG 0.406109 2.1:-4936457 MS.gene057002:CDS
CTTGGTCTTGCTGGCTTGGA+AGG 0.412178 2.1:-4936421 MS.gene057002:intron
TGACATGGACATCAGTAAAC+TGG 0.414127 2.1:-4933242 MS.gene057002:CDS
GAATTTGACTTCGAGTCATT+AGG 0.420138 2.1:-4931312 MS.gene057002:CDS
AAGTTGGAGCGTTCAACTTC+CGG 0.423909 2.1:-4931274 MS.gene057002:CDS
GCAGGTTCCAAGAGCTCCTT+CGG 0.430869 2.1:-4931226 MS.gene057002:CDS
TGTTGTTGGTCGAGATAGAA+AGG 0.431653 2.1:-4938009 MS.gene057002:intron
CGTCACCTTAGAGTGGGTTC+AGG 0.433927 2.1:-4936745 MS.gene057002:CDS
TAAATTCTTAGAGTGTTTCA+AGG 0.436623 2.1:-4936027 MS.gene057002:CDS
ACCAGAAAAGGCAGAGGTTG+AGG 0.439205 2.1:+4931356 None:intergenic
CAAGGAGCTTCCATTAGCTT+CGG 0.439373 2.1:-4936009 MS.gene057002:CDS
AATGATGCTACCTGTAGGTT+AGG 0.441272 2.1:+4931183 None:intergenic
GATTCAAGAGTCATTGTTGT+AGG 0.443512 2.1:-4936570 MS.gene057002:CDS
TCATGTTGTGCAGAGCTTTG+TGG 0.450150 2.1:-4936670 MS.gene057002:CDS
CGCATCTTGAAGACCAGAAA+AGG 0.452901 2.1:+4931344 None:intergenic
AAGAAAGCCTCGGTGCAATC+AGG 0.453949 2.1:+4935718 None:intergenic
AAGTAAGGACTTGCAAAATC+AGG 0.455807 2.1:+4934327 None:intergenic
ACATAAAATTGGTTCTCAAA+AGG 0.471208 2.1:+4936492 None:intergenic
TCAGCAATAACCGAAGCTAA+TGG 0.471706 2.1:+4935999 None:intergenic
CATGTCCTGAACCCACTCTA+AGG 0.472009 2.1:+4936740 None:intergenic
CTGGTCATCCAAGCCTTCAT+AGG 0.472929 2.1:+4937692 None:intergenic
CAGGTCGAAAATTAGGATTA+TGG 0.473341 2.1:-4935747 MS.gene057002:CDS
TAACATATGAATGATATCTC+TGG 0.474469 2.1:+4937725 None:intergenic
ATCTTGGTTGACTCAACAAC+AGG 0.475004 2.1:+4936933 None:intergenic
AATGACTCGAAGTCAAATTC+GGG 0.476941 2.1:+4931315 None:intergenic
TGCGTGGAGATTAATTGTCT+TGG 0.477580 2.1:-4936597 MS.gene057002:CDS
TCTAAGGTGACGCAATCATC+AGG 0.479025 2.1:+4936756 None:intergenic
CGGAGTAGATACACTCTTTG+AGG 0.483861 2.1:+4936143 None:intergenic
ATTATGTAGATAAAGGAGCT+TGG 0.488964 2.1:-4936458 MS.gene057002:CDS
GCCTCTGCCTCCTAACCTAC+AGG 0.493627 2.1:-4931193 MS.gene057002:intron
AGATATTGCACTACAAGGTA+TGG 0.497647 2.1:-4936104 MS.gene057002:CDS
AGTCAACCAAGATCTGCAAT+GGG 0.502301 2.1:-4936923 MS.gene057002:CDS
ATAGCGCGTGGAGTTGTTGT+TGG 0.503009 2.1:-4938023 MS.gene057002:CDS
CCAAGAGCTCCTTCGGTGGA+AGG 0.505692 2.1:-4931219 MS.gene057002:CDS
CAGTTTAATCCTTACTTGGT+CGG 0.507751 2.1:+4937578 None:intergenic
AGAGGATGCATTTAGTATTG+AGG 0.509968 2.1:-4937671 MS.gene057002:CDS
GGAAGTTGAACGCTCCAACT+TGG 0.511624 2.1:+4931276 None:intergenic
CATGACTTTCATCCTTGAGA+AGG 0.512950 2.1:-4936721 MS.gene057002:CDS
GGCCTAGCTGTTGATACTCT+AGG 0.512971 2.1:+4937612 None:intergenic
ATGCTTCTATTGAAGCATGC+AGG 0.513600 2.1:-4936519 MS.gene057002:CDS
ACTTGGTCGGCAAGTAACTC+AGG 0.515239 2.1:+4937591 None:intergenic
TTGCAGGAGCCACACAATGC+TGG 0.515785 2.1:-4931105 MS.gene057002:intron
TCCCTTCAGGAAAGCCAAAA+CGG 0.516442 2.1:-4935923 MS.gene057002:CDS
TAGGATGTCCTATGAAGGCT+TGG 0.518415 2.1:-4937700 MS.gene057002:CDS
AGGCGGTACTCAAGTTGTGC+AGG 0.526945 2.1:-4931244 MS.gene057002:CDS
GATTTGAATGACTGAAAGTA+AGG 0.528190 2.1:+4934312 None:intergenic
ATATCATTCATATGTTAAGT+AGG 0.528746 2.1:-4937719 MS.gene057002:CDS
GAAGGACCAGATGCAAGGGC+TGG 0.535116 2.1:-4935020 MS.gene057002:intron
TCAATACTAAATGCATCCTC+TGG 0.535882 2.1:+4937673 None:intergenic
GATGGTCTGAGGGGTAATGC+AGG 0.537305 2.1:-4935766 MS.gene057002:CDS
AAACAGAGATATAACAATGA+AGG 0.537487 2.1:-4934372 MS.gene057002:CDS
ACCAGATGCAAGGGCTGGAA+GGG 0.537902 2.1:-4935015 MS.gene057002:CDS
ATGATTGCGTCACCTTAGAG+TGG 0.540344 2.1:-4936752 MS.gene057002:CDS
TTTCTCAATGTTGCATCGCA+AGG 0.541743 2.1:+4937858 None:intergenic
GAGTCAACCAAGATCTGCAA+TGG 0.543443 2.1:-4936924 MS.gene057002:CDS
GACCAGATGCAAGGGCTGGA+AGG 0.543765 2.1:-4935016 MS.gene057002:CDS
ACCTGTAGGTTAGGAGGCAG+AGG 0.544165 2.1:+4931192 None:intergenic
TGAGTACCGCCTGAACCATC+CGG 0.547100 2.1:+4931255 None:intergenic
AGGATGAAAGAAATTGCTCA+TGG 0.553009 2.1:-4937651 MS.gene057002:CDS
AAAACACATGATTGCAGCAA+GGG 0.556443 2.1:-4931049 MS.gene057002:intron
CACATGAAGGACCAGATGCA+AGG 0.560138 2.1:-4935025 MS.gene057002:intron
TCTTCTGTGAAGCCTTCTCA+AGG 0.560176 2.1:+4936709 None:intergenic
AGGTTTGCTTTGTGGATGAA+CGG 0.560971 2.1:-4936971 MS.gene057002:CDS
TCGAAAATTAGGATTATGGT+GGG 0.561983 2.1:-4935743 MS.gene057002:CDS
TTGTTGTAGGCGACATACAC+GGG 0.562402 2.1:-4936557 MS.gene057002:CDS
AAGTAGAGCTAGGACACGTA+AGG 0.562898 2.1:-4930771 MS.gene057002:CDS
CAGCTTTGCGAAGTAGAGCT+AGG 0.563664 2.1:-4930781 MS.gene057002:CDS
CAATCCAGGAGCTGAGAACA+GGG 0.565906 2.1:-4930813 MS.gene057002:intron
TGCTCGTAGTATTTCCCGTA+AGG 0.566936 2.1:-4936628 MS.gene057002:CDS
GATGCAAGGGCTGGAAGGGA+TGG 0.570508 2.1:-4935011 MS.gene057002:CDS
ATTGTTGTAGGCGACATACA+CGG 0.571020 2.1:-4936558 MS.gene057002:CDS
TTAAGTAGGATGTCCTATGA+AGG 0.572031 2.1:-4937705 MS.gene057002:CDS
GCATATATAATGCTCCAAGT+TGG 0.572630 2.1:-4931290 MS.gene057002:CDS
GGAGATTAATTGTCTTGGAG+AGG 0.573427 2.1:-4936592 MS.gene057002:CDS
GATGCTACCTGTAGGTTAGG+AGG 0.576637 2.1:+4931186 None:intergenic
ATCTAACAGAGATGGTCTGA+GGG 0.577450 2.1:-4935776 MS.gene057002:CDS
ATCTTGATTCGTGATTTCCA+CGG 0.577639 2.1:+4936123 None:intergenic
ATGTTTCTTTAAGAAAGCCT+CGG 0.586681 2.1:+4935708 None:intergenic
GTCGAAAATTAGGATTATGG+TGG 0.597090 2.1:-4935744 MS.gene057002:CDS
ACAACATGACATAATTCAGT+TGG 0.597658 2.1:+4936684 None:intergenic
TGATTGCGTCACCTTAGAGT+GGG 0.600614 2.1:-4936751 MS.gene057002:CDS
CTCCGTGAGTATTATAAACA+CGG 0.601546 2.1:+4935976 None:intergenic
GACCGTGTTTATAATACTCA+CGG 0.602921 2.1:-4935978 MS.gene057002:CDS
AGAGGCAATCCTTCCACCGA+AGG 0.602990 2.1:+4931210 None:intergenic
CATCTAACAGAGATGGTCTG+AGG 0.608026 2.1:-4935777 MS.gene057002:CDS
ACATGAAGGACCAGATGCAA+GGG 0.611436 2.1:-4935024 MS.gene057002:intron
GATACATGAAGATGACATGT+TGG 0.615350 2.1:-4936871 MS.gene057002:CDS
TCAAAACCATCTAACAGAGA+TGG 0.617338 2.1:-4935784 MS.gene057002:CDS
GGATGAAAGAAATTGCTCAT+GGG 0.619244 2.1:-4937650 MS.gene057002:CDS
CTTTATTGATAAGGACGTAG+AGG 0.621822 2.1:-4931379 MS.gene057002:intron
GGTTCCAAGAGCTCCTTCGG+TGG 0.623152 2.1:-4931223 MS.gene057002:CDS
TGGAGCGTTCAACTTCCGGA+TGG 0.625218 2.1:-4931270 MS.gene057002:CDS
TACTCATAACCAGCATTGTG+TGG 0.626428 2.1:+4931096 None:intergenic
GGGTAGATGTCACAATCGAT+CGG 0.627834 2.1:-4930750 MS.gene057002:CDS
AGAAGACACAGAGTGGACCT+TGG 0.630647 2.1:-4935899 MS.gene057002:intron
AGTAGAGCTAGGACACGTAA+GGG 0.633925 2.1:-4930770 MS.gene057002:CDS
AACCTAGAGTATCAACAGCT+AGG 0.639256 2.1:-4937614 MS.gene057002:CDS
TAGTGCTCCAGACTACCCGC+AGG 0.640559 2.1:-4934919 MS.gene057002:intron
AATCAAGATATTGCACTACA+AGG 0.640706 2.1:-4936109 MS.gene057002:CDS
TTGAAGACCAGAAAAGGCAG+AGG 0.641243 2.1:+4931350 None:intergenic
CAAATCAGCAGAAAGACCAA+TGG 0.645891 2.1:-4934295 MS.gene057002:intron
AAACGGAAGAAGACACAGAG+TGG 0.647039 2.1:-4935906 MS.gene057002:CDS
TAAAACACATGATTGCAGCA+AGG 0.651317 2.1:-4931050 MS.gene057002:CDS
CAACTTCCGGATGGTTCAGG+CGG 0.664329 2.1:-4931261 MS.gene057002:CDS
AAACAGCGGCATGATTGCTG+CGG 0.665828 2.1:+4935946 None:intergenic
CAAAGAGTGTATCTACTCCG+TGG 0.668192 2.1:-4936140 MS.gene057002:CDS
TATGTAGATAAAGGAGCTTG+GGG 0.671070 2.1:-4936456 MS.gene057002:CDS
ATGAAGGCTTGGATGACCAG+AGG 0.673176 2.1:-4937689 MS.gene057002:CDS
GTGTTTATAATACTCACGGA+GGG 0.675494 2.1:-4935974 MS.gene057002:CDS
CCGTAAGGAACCAAACTGCG+TGG 0.692074 2.1:-4936613 MS.gene057002:CDS
CTTTCCTGAAGGGAAAACAG+CGG 0.692197 2.1:+4935932 None:intergenic
CGAAAATTAGGATTATGGTG+GGG 0.695411 2.1:-4935742 MS.gene057002:CDS
ATGATGAGAGAAATAGCGCG+TGG 0.696217 2.1:-4938035 MS.gene057002:CDS
AAGGTGACGCAATCATCAGG+AGG 0.701699 2.1:+4936759 None:intergenic
TCAGCACCAAAACCAAGACA+AGG 0.723654 2.1:+4933268 None:intergenic
GGATACAGCATAGATCACGA+TGG 0.727398 2.1:-4934969 MS.gene057002:CDS
GTCAACCAAGATCTGCAATG+GGG 0.743093 2.1:-4936922 MS.gene057002:CDS
TCTAACAGAGATGGTCTGAG+GGG 0.744889 2.1:-4935775 MS.gene057002:CDS
GTGGGGTCCTGATTGCACCG+AGG 0.749686 2.1:-4935725 MS.gene057002:CDS
CGTGTTTATAATACTCACGG+AGG 0.761284 2.1:-4935975 MS.gene057002:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr2.1 gene 4930747 4938102 4930747 ID=MS.gene057002
chr2.1 mRNA 4930747 4938102 4930747 ID=MS.gene057002.t1;Parent=MS.gene057002
chr2.1 exon 4938010 4938102 4938010 ID=MS.gene057002.t1.exon1;Parent=MS.gene057002.t1
chr2.1 CDS 4938010 4938102 4938010 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4937855 4937905 4937855 ID=MS.gene057002.t1.exon2;Parent=MS.gene057002.t1
chr2.1 CDS 4937855 4937905 4937855 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4937593 4937757 4937593 ID=MS.gene057002.t1.exon3;Parent=MS.gene057002.t1
chr2.1 CDS 4937593 4937757 4937593 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4936422 4936991 4936422 ID=MS.gene057002.t1.exon4;Parent=MS.gene057002.t1
chr2.1 CDS 4936422 4936991 4936422 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4935900 4936174 4935900 ID=MS.gene057002.t1.exon5;Parent=MS.gene057002.t1
chr2.1 CDS 4935900 4936174 4935900 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4935668 4935843 4935668 ID=MS.gene057002.t1.exon6;Parent=MS.gene057002.t1
chr2.1 CDS 4935668 4935843 4935668 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4934920 4935038 4934920 ID=MS.gene057002.t1.exon7;Parent=MS.gene057002.t1
chr2.1 CDS 4934920 4935038 4934920 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4934296 4934400 4934296 ID=MS.gene057002.t1.exon8;Parent=MS.gene057002.t1
chr2.1 CDS 4934296 4934400 4934296 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4933228 4933296 4933228 ID=MS.gene057002.t1.exon9;Parent=MS.gene057002.t1
chr2.1 CDS 4933228 4933296 4933228 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4931194 4931388 4931194 ID=MS.gene057002.t1.exon10;Parent=MS.gene057002.t1
chr2.1 CDS 4931194 4931388 4931194 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4931050 4931121 4931050 ID=MS.gene057002.t1.exon11;Parent=MS.gene057002.t1
chr2.1 CDS 4931050 4931121 4931050 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
chr2.1 exon 4930747 4930827 4930747 ID=MS.gene057002.t1.exon12;Parent=MS.gene057002.t1
chr2.1 CDS 4930747 4930827 4930747 ID=cds.MS.gene057002.t1;Parent=MS.gene057002.t1
Gene Sequence

>MS.gene057002

ATGTCTTTGGTGAATTTAGATGATCAGCAAGTTCATTCTTTAGTGATGATGAGAGAAATAGCGCGTGGAGTTGTTGTTGGTCGAGATAGAAAGGTTGGTATATAGAGGGTGTACAAGAAGTTAATTATGTTTTTGTACACAATGTTCGTTGTTCTTGGCATAGCTGTCATTAAGTGAGTGCTATTTAAATTTTACAGGTGACCAAGAATGACGTGATCACTGCCTTGCGATGCAACATTGAGAAAATGGTTAACTTTGCTTCTTTCATGTATTCATTCATGATGGATTTTGTTAATATTGGTGTTTTTTTGGTCTATCTTTGAACTGACTTGAGGCAGTTTGCAGGTGTGTGCATCCAGAGATATCATTCATATGTTAAGTAGGATGTCCTATGAAGGCTTGGATGACCAGAGGATGCATTTAGTATTGAGGATGAAAGAAATTGCTCATGGGATTGTTGATAAGCAACCTAGAGTATCAACAGCTAGGCCTGAGTTACTTGCCGACCAAGTAAGGATTAAACTGCACTGGATGTTTTAGTAAAAAGCTGAATTAAGTGTTTATTCAATAAGGTCCTAGTAGGTAGGAACTTATTTAAGCTGTTTTTATAATCACAGAGGAAACAAGTTTAACCTCGACATCAATGATCGGTTTGTATAATCCATCCTCAGGATCTTATGAAAATAAGCTAAAAGAGGATTGTTAGGCACACTCTCTTCTCAACACTCACTCTAACAATTACTCTCTTATTAAGCAAAACCCATATGGGTTCCACCACTTTATGTGAGACCCATTTCCGAAGTATGGGACCCACATTGATATCACCCAATAAGAGAGCGAGTGTTAGAGTGAGCGTGTGAAAGAGAAGTGTGGGACCCACATTGATATCACCCACACTGATAGCACTCCTCTAAGCTAAAAATAGCTCATGGACTTATACTAAGCTAATTAAATAAGCTCTTCTAGACACTTATGCTAGTGCTTGTGTTGTAACTTGTAAGATAAGTGCAAATAAGTTCTTCCAGATGCCTGCTCAGTATCTTTTTGACTTCTTCCCCCTCTTTTGTCTACATTTAAGATTTTCCTTAAGATACATTGATCAGTTTTACAGGTTTGCTTTGTGGATGAACGGACAAGAGACAGTACTCCTGTTGTTGAGTCAACCAAGATCTGCAATGGGGATGCTCTAATTGACGAGACACAAAGCATGATACATGAAGATGACATGTTGGACGTCGATCATGTTTTAGGATTTGAAAATGGGATAGATGAAGTAGAAGAATCTCTGTTGTCATCATGCTTTCAGCAGTTTCTTTTGTGGCCTCCTGATGATTGCGTCACCTTAGAGTGGGTTCAGGACATGACTTTCATCCTTGAGAAGGCTTCACAGAAGACGCCAACTGAATTATGTCATGTTGTGCAGAGCTTTGTGGTGTACAAATTGATAGATGCTGCTCGTAGTATTTCCCGTAAGGAACCAAACTGCGTGGAGATTAATTGTCTTGGAGAGGATTCAAGAGTCATTGTTGTAGGCGACATACACGGGCAGTTTCATGATTTAATGCTTCTATTGAAGCATGCAGGAGTGCCTTTTGAGAACCAATTTTATGTTTTCAGTGGAAATTATGTAGATAAAGGAGCTTGGGGCGTTGAAGTATTCTTGGTCTTGCTGGCTTGGAAGGTAAGGTGACAGTTATGATACTTAATATAGAAATGTTTAGATCTTCAATGAATTTTCTGCAGTTATTGACCTGTTGGTGCATATTCTCCAGGAGGAGAAAGAAGAACACAGAAGAGTACCGCATAGAAATATTAAACGACTTGTGTCAAAAAAAGAAAAAGAAATATTAAATGACCTAGCAACTTTTATAGTGACCAAATGCTATACCTGAGTTATCAGTATGTTAACTCTGTCATTATATTTTCAGATCTTGATGCCTCAAAGAGTGTATCTACTCCGTGGAAATCACGAATCAAGATATTGCACTACAAGGTATGGTTTTAAGAAGGAGGTGCAGACCAAATATGGCAATCAAAGCGAAGATGTGTACAATAAATTCTTAGAGTGTTTCAAGGAGCTTCCATTAGCTTCGGTTATTGCTGACCGTGTTTATAATACTCACGGAGGGCTTTTCCGCAGCAATCATGCCGCTGTTTTCCCTTCAGGAAAGCCAAAACGGAAGAAGACACAGAGTGGACCTTGGTTCTTTAGCAGATTTATCTCAAGTTAAAAGAGCTTGCATAGATTCTCCTCCTGAGGGTCCTAATTAATATATTATTGAGTGACATTCTCTGGTCAAAACCATCTAACAGAGATGGTCTGAGGGGTAATGCAGGTCGAAAATTAGGATTATGGTGGGGTCCTGATTGCACCGAGGCTTTCTTAAAGAAACATAGTTTAAAGGTAATATTCCAAATAATACATATTTTGACTAGTAAAGAATAACAAAATTCCTATTTATTTTATTTTATTGTAATAAGTAGTTTGATTAAGATTTCTTGGTCTTCTATTTTTAAAGTTGTGTTTGGTGTCATTTATGTCTATCCTACCAAATTATGCTTCTTCTGTCAGCAAGCTATAATCATGTTCTAGGCATTCTTATCTCTATCCCTTGCCCTTCTCTCTTTTTACTTTCTTTCTTAAAGCTTAGTCTACTTGTCTTTCTAGTTTCTTTTGTTATTCCTAGGACCGGAAATTTCAGCGCTAAATGAAAATAAAAACATCAGTATCATCCTTTCCTGCAAGACAATGGTATTATTCATGTATCTGAATTTGCACACACTTGATATATTGCTCCAATTCATGTTCTTTATATCTCTCTGCTTACCTAGAATGCAATCACTAAAATCCCACACTTAATTAGCTTTTTATTAGATGGTTGGAAATGTCAATAAAAATTGTTACCAACAATAACTGTCATTGTTCAACAAGATGAATTACATGTTTAGATGTGAATAAAAGAAGCAATGCAAGTTATAAATATCATTTGATCACCCAACAAATATTCTTCTAGCTTAGTAAATATTATTCTTCCTGCATAACTGATCATCAGATCACATGAAGGACCAGATGCAAGGGCTGGAAGGGATGGTTTTGGGGACATGTTGAATGGATACAGCATAGATCACGATGGACAATCAAGAAAACTATATGCAATTTTTAGTGCTCCAGACTACCCGCAGGTTAAATTTCATATTCAACTAGCAATTTGTTATTTATATTTTTCATTTATAAAAAAATTGCATTTGTTGCACCTGTTAACTTTTTCTTAAGCAATGTCATAATGGTTCACTAATTGATTTTTGGGAACACTTAAGACAACAAGCTCAGCCATTGCCATATACGAAAGCATGTATATATTGACATCCAATTTATGCCATTGTCTTTTAAGATTAGAGTTTTTTCTGCAAGTTGAATCTGATGTTTGCCTAGGAATCTAGTATGTGTTATGTAGCCGTGTGTTTTCAAATAACTTATCTTTTAAATGGTGGAAAATTTATACATAATAAACAAGTGGTGTATGTTTCGTTTGCAACTCTACATATGGGGATTGTTACAGACATATAGATTTGAAGAAAACATGTAATATTGTGCACTTGTAGTGTTTGAGTGATTAACTGTAGCTTAATAAAAGGATGCGTGACATTGAGATCTGCAGCAACTAAAGTGTCATATCTTTTTAAAGGTCTTCTGTATTGCAGTTTGGGAAACAGAGATATAACAATGAAGGAGCATATGCAATATTGAAGTCACCTGATTTTGCAAGTCCTTACTTTCAGTCATTCAAATCAGCAGAAAGACCAATGGTAACGAGTTCTTAACTAGTTATCTTACAAAGATTGCATGACATATATTTCGTTGGGATCCCACATCGACCTGAGATATGGCTGAAATAGTTCTCGTAAGACCTAGGTAATCTTCACTCCTTGAGCTAGCTTTTGGGTTGAGTTAGGTTTAGCTCAAGTGTTAAGATGAAAACGTCCGGTCGTACCAATTTCACGTTCCAAATGTCTATTCTTGGTCCTAAGACGATTGTTAAGACCTCACGTGAGCTAGAGAGAGAACCAAGGTTTGGGAATTTCTCGTCCCTTGAGCTAGTTTTTGGGATTGAGTTATGCCTAGCCTAAATTTCAATATTTTACTTTCGATCATAGGGGATGAGTTGAAAGCTGGCAGTCACTTACAGTTGGCAGAAAACATAGATTGTATTGAATCTGAAAAAGATTTTAAAAAATAATATATAGTAATCAATTTGGATAATTGTGGCCATTTATATTATCTATATGTAAAATTGTTGAAATTTGGGGCCTAACTCATCCTTATAAAACTGGCTTGTAAAGTGAGGGGTGCCTCCTCTTTATAAACCCTTCTCAAGAGTTATCTATCCGACGTGGGACTAAATCCACCCCCTCAAAGCCAACACAATGAAGGTTTTGGAGGCTGCAACGCAGGCTAACCAAAGGTCGCAATTTAGGCGACTAGTGGTGGACCGCAATTAAGGCGGAATTTCCAACAAAAATATTTTAATATATGTGAGAATTTTAATATGTAAAATTGTGGCCCTTAAAAGTACCTTAATATAGAAAATATGCATTTTAATATACCGATATATTTGGAGATATATGGTTGGCTCAGTGGTAGTGGTAGTTGAGTGATAAGAAAAGAGTTCAATCTCTATCCCCAACATAATACTAACTATACTAACATTGAACACTAAAAAAAACATTGAAATGTTTTTATTTTTTTATTTATTTTTTATCATCTCCTCTTTATTATGACTGACATTTGTAATGCTTGCTTCCCAGGTGTATCCTTGTCTTGGTTTTGGTGCTGATGATGACATGGACATCAGTAAACTGGACTCTTCTCAAATTGTATGTTAGCAAATATCTTTTCCAATAAGTGTTCCTCTGCTAATGTGTCAAGTGTGAATTGTAGTCTATAAGATGAATGAGTAAGATGAATGAGTATAGTTGCATGTAAATGCATAGACAATTCTAATATATGTAGACAATGTTTTGCTGCATATATTTCACATCATATAGCAATTAGGCTTTTGTTCTAAATTTTACATTGGGTTATCAAGTGAAATTATTTCATTTTTAGTCTCAATTTTTTGTTGACATCTAAAGTGGCATTCCCTATTTAGTGGCTTTATATTTTTGATACTATGTTACTTTTTTTTTTATTATAAAATCAAGTACGAATCAGAATGCTTGCTACATCGTTTGGACCTATAGTTTCTAAAAATATGCAATCTTTTTGAAGTGTGAGATTGAATTTGAATGTTAATTTTCTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTGAATTTAATTTGAATGTTAATTTTCTTCTTTGCCTCTGTTGAAATTTGGGGCCTAACTCATCCTTACAAAACCAGCTTGTAAGGTGAGGATATTTAGTGGCTTTATATTTTAGTGGCTTTATATTTTTGATACTATGTTACTTTTTTTTTTATTATAAAATCAAGTACGAATCAGAATGCTTGCTACGTCGTTTGGACCTATAGTTTCTAAAAATATGCAATCTTTTTGAAGTGTGAGATTGAATTTGAATGTTAATTTTCTTCTTTCTTTGCCTCTGTTGAAAAATTTGGGAAAATTTGGGAGATTGAGAGATTGAATTATAAAATCAAGTACGAATCAGAATGCTTGCTACATCGTTTGGACCTATAGTTTCTAAAAATATGCAATCTTTTTGAAGTGTGAGATTGAATTTGAATGTTAATTTTCTTCTTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTGAGAGATTGATGATTTGAATGTTAATTTTCTTCTTTCTTTGCCTCTGTTGAAAAATTTGGGAAAATTTGGGAGATTGAGAGATTGATGAAAAATTTGGGAGATTGAGAGATTGATGCCCAAAAAATTTGGGCATCAATCTCCCAAATTTTTCATCAATCTCTCAATCTCCCAAATAGTTAATTTTCTTCTTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTGAGAGATTGATGCCCAAAAAATTTGGGCATCAATCTCTCAATCTCCCAAATTTTCCCAAATTTTTCATCAATCTCTCAATCTCCCAAAATTTTTTCTTCTTTTCTTCTTTGCCTCTGTTGAAATTTGGGGCCTAACTCATCCTTACAAAACCGGCTTGTAAGTTGAGGAGTGCCTCCTCTTTATAAACTCTGATCAAGTTTCCAATCTAACCGATGTGGGACTAAATCCACCCCCTAACTTGGGGCAGATCGCATCGCAATTTTAAGGTGGAATTACCAACCCACCCCCTCACATTCGGGGCGGGATTTCCAACGCACCTGAGGTGGAATTACCAACCCACTCCCTCATATTCGGGTCGGGATTTCCAACAGCCTCCTTATCAGCTTGAATTGAGAACTTGTGTATCATTGGATTTCTAGCAATGATATTAGACTACAGATAAGTTTGACAGCTTTTTGTCACTGGTATGCTAACATGGTTAAAAATGTGTTAAGCTGAATATGAAACATAAAGTTCAGAAGACCTTGATCAGATCATCATTGCACCGTGTCTTTTTTTTATCACTTTGTAATTACACTGTCTCTCTTTTTGTATTGGGACATAAGATATGCCCAATACATTATTATTCTCATTGTCATCGTCATGTTGTATTGCTTGCTAAAGACAGATAACTGAACCAACTTAACTTTATTGATAAGGACGTAGAGGCCTCAACCTCTGCCTTTTCTGGTCTTCAAGATGCGGTGAGACCCGAATTTGACTTCGAGTCATTAGGCATATATAATGCTCCAAGTTGGAGCGTTCAACTTCCGGATGGTTCAGGCGGTACTCAAGTTGTGCAGGTTCCAAGAGCTCCTTCGGTGGAAGGATTGCCTCTGCCTCCTAACCTACAGGTAGCATCATTTACGATTTACCAACATCTTTGTTAAAGTGGCTAGTGCTGACTCGAATTCTCGTTTTTGCAGGAGCCACACAATGCTGGTTATGAGTATTTGTTCGAGCTCGTTGCTGGCCTAAAACACATGATTGCAGCAAGGGTGAGTTTGTAACTCATGACATTATGTATTTACTAATGATCCAATGTTGATATTTGTCAAACTCCTGTTTTTTTTCCTGCTCAACTCTTTTCATTTCCTCCATGAATTTTTACACCCGTTTTGTGATTTTAGGGACCCGTGTTTCTGCACGGGTATACACATCTAGTTTTTTCACATATCTCTTTCGAGAGGGTAAGCTAAACCTGGTACTTTTCAATCCAGGAGCTGAGAACAGGGCTCAAGTATCAGCTTTGCGAAGTAGAGCTAGGACACGTAAGGGTAGATGTCACAATCGATCGGTAA
Protein sequence

>MS.gene057002.t1

MSLVNLDDQQVHSLVMMREIARGVVVGRDRKVTKNDVITALRCNIEKMVCASRDIIHMLSRMSYEGLDDQRMHLVLRMKEIAHGIVDKQPRVSTARPELLADQVCFVDERTRDSTPVVESTKICNGDALIDETQSMIHEDDMLDVDHVLGFENGIDEVEESLLSSCFQQFLLWPPDDCVTLEWVQDMTFILEKASQKTPTELCHVVQSFVVYKLIDAARSISRKEPNCVEINCLGEDSRVIVVGDIHGQFHDLMLLLKHAGVPFENQFYVFSGNYVDKGAWGVEVFLVLLAWKILMPQRVYLLRGNHESRYCTTRYGFKKEVQTKYGNQSEDVYNKFLECFKELPLASVIADRVYNTHGGLFRSNHAAVFPSGKPKRKKTQSGPWVLINILLSDILWSKPSNRDGLRGNAGRKLGLWWGPDCTEAFLKKHSLKVIFQIIHILTRPDARAGRDGFGDMLNGYSIDHDGQSRKLYAIFSAPDYPQFGKQRYNNEGAYAILKSPDFASPYFQSFKSAERPMVYPCLGFGADDDMDISKLDSSQIDVEASTSAFSGLQDAVRPEFDFESLGIYNAPSWSVQLPDGSGGTQVVQVPRAPSVEGLPLPPNLQEPHNAGYEYLFELVAGLKHMIAARELRTGLKYQLCEVELGHVRVDVTIDR