AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76158


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76158.t1 MTR_2g099710 78.984 571 62 5 1 550 48 581 0.0 900
MS.gene76158.t1 MTR_8g072600 43.750 400 174 8 126 476 59 456 1.07e-106 328
MS.gene76158.t1 MTR_8g072600 45.017 291 126 4 126 384 59 347 5.89e-79 253
MS.gene76158.t1 MTR_3g452710 33.433 335 188 12 130 461 168 470 6.38e-44 163
MS.gene76158.t1 MTR_3g452710 33.433 335 188 12 130 461 235 537 2.40e-43 163
MS.gene76158.t1 MTR_2g100130 33.887 301 170 11 166 461 113 389 1.23e-39 149
MS.gene76158.t1 MTR_2g100130 33.887 301 170 11 166 461 222 498 3.21e-39 150
MS.gene76158.t1 MTR_2g100130 33.887 301 170 11 166 461 212 488 3.84e-39 150
MS.gene76158.t1 MTR_2g100130 33.887 301 170 11 166 461 183 459 4.22e-39 149
MS.gene76158.t1 MTR_2g100160 33.234 337 189 13 129 461 104 408 5.01e-39 148
MS.gene76158.t1 MTR_2g100130 34.629 283 156 10 166 443 222 480 6.46e-38 147
MS.gene76158.t1 MTR_2g100130 34.014 294 164 11 166 454 183 451 1.12e-37 145
MS.gene76158.t1 MTR_2g100130 34.276 283 158 10 166 443 222 481 1.15e-37 146
MS.gene76158.t1 MTR_2g100130 35.249 261 145 9 166 421 222 463 5.04e-36 141
MS.gene76158.t1 MTR_1g079950 30.178 338 196 10 164 497 31 332 1.77e-35 136
MS.gene76158.t1 MTR_1g043240 31.410 312 164 10 164 454 31 313 6.53e-35 134
MS.gene76158.t1 MTR_1g079950 30.844 308 176 9 164 467 31 305 1.46e-34 133
MS.gene76158.t1 MTR_1g079950 30.976 297 171 8 164 456 31 297 1.97e-34 133
MS.gene76158.t1 MTR_7g107310 32.508 323 184 12 137 456 7 298 3.89e-34 132
MS.gene76158.t1 MTR_1g079950 30.844 308 176 9 164 467 60 334 4.32e-34 133
MS.gene76158.t1 MTR_7g116380 31.864 295 171 9 164 456 31 297 1.75e-33 130
MS.gene76158.t1 MTR_7g116380 30.519 308 177 9 164 467 31 305 1.88e-33 130
MS.gene76158.t1 MTR_8g085610 32.484 314 179 11 145 456 11 293 1.99e-33 130
MS.gene76158.t1 MTR_8g085610 33.220 295 167 10 164 456 3 269 2.50e-33 129
MS.gene76158.t1 MTR_5g081230 30.640 297 172 9 164 456 48 314 1.16e-32 128
MS.gene76158.t1 MTR_8g005010 30.479 292 165 9 167 452 32 291 2.13e-32 126
MS.gene76158.t1 MTR_1g079950 31.190 311 179 9 191 497 27 306 2.91e-32 127
MS.gene76158.t1 MTR_8g062430 34.328 268 152 9 156 421 17 262 8.86e-32 125
MS.gene76158.t1 MTR_1g074880 31.298 262 152 6 164 421 31 268 1.14e-31 125
MS.gene76158.t1 MTR_1g074880 31.298 262 152 6 164 421 31 268 1.23e-31 125
MS.gene76158.t1 MTR_7g112870 30.065 306 173 10 164 458 33 308 1.29e-31 125
MS.gene76158.t1 MTR_8g098980 29.097 299 174 9 164 456 32 298 3.26e-31 124
MS.gene76158.t1 MTR_5g037200 33.220 295 167 10 164 456 25 291 8.78e-31 122
MS.gene76158.t1 MTR_1g074880 33.621 232 131 5 194 421 1 213 1.03e-30 121
MS.gene76158.t1 MTR_1g074880 33.621 232 131 5 194 421 1 213 1.53e-30 120
MS.gene76158.t1 MTR_1g089370 34.252 254 148 6 140 384 529 772 6.87e-29 122
MS.gene76158.t1 MTR_5g037200 42.763 152 77 4 164 314 25 167 6.25e-27 108
MS.gene76158.t1 MTR_5g093990 32.090 268 150 9 193 454 46 287 8.52e-27 111
MS.gene76158.t1 MTR_1g039380 33.333 261 143 10 167 421 24 259 1.36e-25 107
MS.gene76158.t1 MTR_1g039380 33.463 257 140 10 171 421 4 235 4.15e-25 105
MS.gene76158.t1 MTR_2g087530 30.159 315 178 12 140 438 645 933 2.36e-24 108
MS.gene76158.t1 MTR_2g087530 29.299 314 182 10 140 438 532 820 2.51e-24 108
MS.gene76158.t1 MTR_4g050540 30.063 316 177 13 140 438 650 938 7.34e-24 107
MS.gene76158.t1 MTR_7g066570 63.235 68 25 0 483 550 483 550 1.48e-17 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76158.t1 AT5G63870 47.500 400 167 7 124 480 9 408 9.84e-117 352
MS.gene76158.t1 AT5G63870 47.500 400 167 7 124 480 9 408 9.84e-117 352
MS.gene76158.t1 AT5G10900 41.453 468 228 9 126 571 157 600 3.70e-111 344
MS.gene76158.t1 AT5G10900 41.328 467 228 9 126 570 157 599 1.54e-110 343
MS.gene76158.t1 AT5G10900 40.938 469 212 9 126 570 157 584 2.71e-108 337
MS.gene76158.t1 AT5G63870 48.252 286 122 3 124 383 9 294 6.47e-83 261
MS.gene76158.t1 AT1G48120 44.081 397 162 9 113 457 576 964 4.35e-82 280
MS.gene76158.t1 AT2G42810 34.234 333 184 12 132 461 172 472 3.31e-44 164
MS.gene76158.t1 AT2G42810 34.234 333 184 12 132 461 172 472 3.31e-44 164
MS.gene76158.t1 AT2G42810 34.234 333 184 12 132 461 172 472 3.31e-44 164
MS.gene76158.t1 AT2G42810 34.234 333 184 12 132 461 226 526 1.16e-43 164
MS.gene76158.t1 AT2G42810 34.234 333 184 12 132 461 225 525 1.18e-43 163
MS.gene76158.t1 AT5G43380 32.710 321 158 11 164 461 31 316 2.34e-35 135
MS.gene76158.t1 AT5G43380 31.562 320 163 10 164 461 31 316 2.78e-35 135
MS.gene76158.t1 AT5G43380 32.710 321 158 11 164 461 31 316 2.79e-35 135
MS.gene76158.t1 AT2G42500 32.803 314 178 11 145 456 16 298 4.83e-35 134
MS.gene76158.t1 AT3G58500 32.166 314 180 11 145 456 16 298 7.02e-34 131
MS.gene76158.t1 AT3G05580 30.686 277 156 8 164 434 37 283 2.41e-33 130
MS.gene76158.t1 AT2G39840 32.432 296 168 10 164 456 45 311 2.62e-33 130
MS.gene76158.t1 AT2G29400 30.769 299 168 11 164 456 48 313 1.57e-32 127
MS.gene76158.t1 AT5G59160 31.987 297 168 9 164 456 41 307 3.18e-32 126
MS.gene76158.t1 AT5G59160 31.987 297 168 9 164 456 41 307 3.18e-32 126
MS.gene76158.t1 AT5G59160 31.987 297 168 9 164 456 41 307 3.18e-32 126
MS.gene76158.t1 AT5G27840 31.047 277 155 9 164 434 37 283 1.22e-31 125
MS.gene76158.t1 AT1G64040 30.408 319 165 11 164 468 32 307 1.38e-31 125
MS.gene76158.t1 AT5G27840 31.047 277 155 9 164 434 37 283 1.51e-31 125
MS.gene76158.t1 AT5G27840 31.047 277 155 9 164 434 37 283 1.79e-31 125
MS.gene76158.t1 AT5G27840 31.047 277 155 9 164 434 37 283 1.79e-31 125
MS.gene76158.t1 AT1G10430 32.899 307 168 11 156 456 17 291 5.21e-31 123
MS.gene76158.t1 AT1G10430 32.899 307 168 11 156 456 17 291 5.21e-31 123
MS.gene76158.t1 AT1G59830 33.562 292 164 10 167 456 28 291 1.33e-30 122
MS.gene76158.t1 AT1G69960 31.699 306 173 10 156 456 18 292 2.67e-30 121
MS.gene76158.t1 AT3G05580 31.839 223 137 5 164 386 37 244 7.04e-30 118
MS.gene76158.t1 AT4G11240 28.391 317 180 10 146 456 23 298 3.13e-29 118
MS.gene76158.t1 AT4G26720 32.584 267 154 9 193 456 46 289 4.86e-29 117
MS.gene76158.t1 AT1G59830 37.674 215 115 7 167 379 28 225 6.39e-29 116
MS.gene76158.t1 AT3G46820 31.864 295 171 10 164 456 41 307 2.96e-28 115
MS.gene76158.t1 AT5G55260 30.164 305 176 10 156 454 14 287 3.47e-27 112
MS.gene76158.t1 AT1G03445 31.618 272 151 8 164 421 481 731 4.63e-27 116
MS.gene76158.t1 AT1G03445 31.618 272 151 8 164 421 481 731 5.69e-27 116
MS.gene76158.t1 AT2G42500 32.627 236 137 7 222 456 37 251 1.55e-26 109
MS.gene76158.t1 AT4G03080 30.421 309 179 9 143 438 534 819 3.76e-26 114
MS.gene76158.t1 AT3G19980 33.333 261 143 10 167 421 24 259 8.14e-26 108
MS.gene76158.t1 AT1G50370 33.333 261 143 10 167 421 24 259 1.77e-25 107
MS.gene76158.t1 AT2G42500 39.860 143 77 3 164 304 32 167 7.46e-24 99.4
MS.gene76158.t1 AT2G27210 31.849 292 155 13 164 438 680 944 1.40e-23 106
MS.gene76158.t1 AT2G27210 30.380 316 176 13 140 438 651 939 1.60e-23 105
MS.gene76158.t1 AT2G42500 38.125 160 87 4 145 302 16 165 1.69e-23 97.8
MS.gene76158.t1 AT2G42500 40.426 141 75 3 164 302 32 165 3.04e-23 97.4
MS.gene76158.t1 AT1G08420 30.380 316 176 13 140 438 667 955 3.88e-23 104
MS.gene76158.t1 AT1G08420 30.380 316 176 13 140 438 662 950 4.96e-23 104
MS.gene76158.t1 AT5G55260 26.590 346 176 11 156 454 14 328 1.03e-20 94.4

Find 135 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGTGTCTTCTTCCGTTT+TGG 0.192424 2.3:+3992986 None:intergenic
TTCCACTGAAAACATAAAAT+TGG 0.226054 2.3:+3993558 None:intergenic
TTCGCTTTGATTGCCATATT+TGG 0.235754 2.3:+3993138 None:intergenic
TGAAGTATTCTTGGTCTTGC+TGG 0.281613 2.3:-3993507 MS.gene76158:CDS
TTGGGGCGTTGAAGTATTCT+TGG 0.290241 2.3:-3993516 MS.gene76158:CDS
GGTAATGCAGGTCGAAAATT+AGG 0.298037 2.3:-3992831 MS.gene76158:CDS
AAGGAGGTGCAGACCAAATA+TGG 0.332204 2.3:-3993151 MS.gene76158:CDS
AGCATCCCCATTGCAGATCT+TGG 0.332542 2.3:+3993994 None:intergenic
TATTTGTTCGAGCTCGTTGC+TGG 0.341974 2.3:-3987406 MS.gene76158:CDS
GTGTATCCTTGTCTTGGTTT+TGG 0.343605 2.3:-3990346 MS.gene76158:CDS
AGTGGAAATTATGTAGATAA+AGG 0.355514 2.3:-3993542 MS.gene76158:CDS
CACACAGTTTGGTTCCTTAC+GGG 0.358789 2.3:+3993691 None:intergenic
AGGGCTGGAAGGGATGGTTT+TGG 0.359468 2.3:-3992083 MS.gene76158:CDS
TAATGACTCGAAGTCAAATT+CGG 0.360599 2.3:+3987645 None:intergenic
CAATTAATCTCCACACAGTT+TGG 0.366927 2.3:+3993680 None:intergenic
TATTCTTGGTCTTGCTGGCT+TGG 0.367697 2.3:-3993502 MS.gene76158:CDS
CACTCAATAATATATTAATT+AGG 0.368398 2.3:+3992895 None:intergenic
TCCCTTCCAGCCCTTGCATC+TGG 0.375379 2.3:+3992092 None:intergenic
TCCCAGGTGTATCCTTGTCT+TGG 0.378385 2.3:-3990352 MS.gene76158:intron
TATTATTGAGTGACATTCTC+TGG 0.381034 2.3:-3992884 MS.gene76158:CDS
CTCAGACCATCTCTGTTAGA+TGG 0.381753 2.3:+3992855 None:intergenic
GTTCAACTTCCGGATGGTTC+AGG 0.388202 2.3:-3987595 MS.gene76158:CDS
AATTTAACCTGCGGGTAGTC+TGG 0.398196 2.3:+3991990 None:intergenic
CCTTCCACCGAAGGAGCTCT+TGG 0.405522 2.3:+3987550 None:intergenic
TTATGTAGATAAAGGAGCTT+GGG 0.406109 2.3:-3993534 MS.gene76158:CDS
CTTGGTCTTGCTGGCTTGGA+AGG 0.412178 2.3:-3993498 MS.gene76158:intron
TGACATGGACATCAGTAAAC+TGG 0.414127 2.3:-3990314 MS.gene76158:CDS
CCACACAGTTTGGTTCCTTA+CGG 0.416340 2.3:+3993690 None:intergenic
GAATTTGACTTCGAGTCATT+AGG 0.420138 2.3:-3987643 MS.gene76158:CDS
AAGTTGGAGCGTTCAACTTC+CGG 0.423909 2.3:-3987605 MS.gene76158:CDS
GCAGGTTCCAAGAGCTCCTT+CGG 0.430869 2.3:-3987557 MS.gene76158:CDS
CGTCACCTTAGAGTGGGTTC+AGG 0.433927 2.3:-3993822 MS.gene76158:CDS
GCTTCAAGAGTCATTGTTGT+AGG 0.436559 2.3:-3993647 MS.gene76158:CDS
TAAATTCTTAGAGTGTTTCA+AGG 0.436623 2.3:-3993104 MS.gene76158:CDS
ACCAGAAAAGGCAGAGGTTG+AGG 0.439205 2.3:+3987687 None:intergenic
CAAGGAGCTTCCATTAGCTT+CGG 0.439373 2.3:-3993086 MS.gene76158:CDS
AATGATGCTACCTGTAGGTT+AGG 0.441272 2.3:+3987514 None:intergenic
TCATGTTGTGCAGAGCTTTG+TGG 0.450150 2.3:-3993747 MS.gene76158:CDS
CGCATCTTGAAGACCAGAAA+AGG 0.452901 2.3:+3987675 None:intergenic
AAGAAAGCCTCGGTGCAATC+AGG 0.453949 2.3:+3992795 None:intergenic
AAGTAAGGACTTGCAAAATC+AGG 0.455807 2.3:+3991405 None:intergenic
ACATAAAATTGGTTCTCAAA+AGG 0.471208 2.3:+3993569 None:intergenic
TCAGCAATAACCGAAGCTAA+TGG 0.471706 2.3:+3993076 None:intergenic
CATGTCCTGAACCCACTCTA+AGG 0.472009 2.3:+3993817 None:intergenic
CTGGTCATCCAAGCCTTCAT+AGG 0.472929 2.3:+3994769 None:intergenic
CAGGTCGAAAATTAGGATTA+TGG 0.473341 2.3:-3992824 MS.gene76158:CDS
TAACATATGAATGATATCTC+TGG 0.474469 2.3:+3994802 None:intergenic
ATCTTGGTTGACTCAACAAC+AGG 0.475004 2.3:+3994010 None:intergenic
AATGACTCGAAGTCAAATTC+GGG 0.476941 2.3:+3987646 None:intergenic
TCTAAGGTGACGCAATCATC+AGG 0.479025 2.3:+3993833 None:intergenic
CGGAGTAGATACACTCTTTG+AGG 0.483861 2.3:+3993220 None:intergenic
ATTATGTAGATAAAGGAGCT+TGG 0.488964 2.3:-3993535 MS.gene76158:CDS
GCCTCTGCCTCCTAACCTAC+AGG 0.493627 2.3:-3987524 MS.gene76158:intron
AGATATTGCACTACAAGGTA+TGG 0.497647 2.3:-3993181 MS.gene76158:CDS
AGTCAACCAAGATCTGCAAT+GGG 0.502301 2.3:-3994000 MS.gene76158:CDS
CCAAGAGCTCCTTCGGTGGA+AGG 0.505692 2.3:-3987550 MS.gene76158:CDS
CAGTTTAATCCTTACTTGGT+CGG 0.507751 2.3:+3994655 None:intergenic
AGAGGATGCATTTAGTATTG+AGG 0.509968 2.3:-3994748 MS.gene76158:CDS
GGAAGTTGAACGCTCCAACT+TGG 0.511624 2.3:+3987607 None:intergenic
ATGCTTCTATTGAAGCATGC+AGG 0.513600 2.3:-3993596 MS.gene76158:CDS
TTGCAGGAGCCACACAATGC+TGG 0.515785 2.3:-3987436 MS.gene76158:intron
TCCCTTCAGGAAAGCCAAAA+CGG 0.516442 2.3:-3993000 MS.gene76158:CDS
TAGGATGTCCTATGAAGGCT+TGG 0.518415 2.3:-3994777 MS.gene76158:CDS
CATGACTTTCATCCTTGAGA+AGG 0.518424 2.3:-3993798 MS.gene76158:CDS
AGGCGGTACTCAAGTTGTGC+AGG 0.526945 2.3:-3987575 MS.gene76158:CDS
GATTTGAATGACTGAAAGTA+AGG 0.528190 2.3:+3991390 None:intergenic
ATATCATTCATATGTTAAGT+AGG 0.528746 2.3:-3994796 MS.gene76158:CDS
GGCCTAGCTGTTGATACTCT+AGG 0.528983 2.3:+3994689 None:intergenic
GAAGGACCAGATGCAAGGGC+TGG 0.535116 2.3:-3992098 MS.gene76158:intron
TCAATACTAAATGCATCCTC+TGG 0.535882 2.3:+3994750 None:intergenic
GATGGTCTGAGGGGTAATGC+AGG 0.537305 2.3:-3992843 MS.gene76158:CDS
AAACAGAGATATAACAATGA+AGG 0.537487 2.3:-3991450 MS.gene76158:CDS
ACCAGATGCAAGGGCTGGAA+GGG 0.537902 2.3:-3992093 MS.gene76158:CDS
TGTGTGGAGATTAATTGTCT+TGG 0.538603 2.3:-3993674 MS.gene76158:CDS
ATGATTGCGTCACCTTAGAG+TGG 0.540344 2.3:-3993829 MS.gene76158:CDS
GAGTCAACCAAGATCTGCAA+TGG 0.543443 2.3:-3994001 MS.gene76158:CDS
GACCAGATGCAAGGGCTGGA+AGG 0.543765 2.3:-3992094 MS.gene76158:CDS
ACCTGTAGGTTAGGAGGCAG+AGG 0.544165 2.3:+3987523 None:intergenic
TGAGTACCGCCTGAACCATC+CGG 0.547100 2.3:+3987586 None:intergenic
AGGATGAAAGAAATTGCTCA+TGG 0.553009 2.3:-3994728 MS.gene76158:CDS
AAAACACATGATTGCAGCAA+GGG 0.556443 2.3:-3987380 MS.gene76158:CDS
CACATGAAGGACCAGATGCA+AGG 0.560138 2.3:-3992103 MS.gene76158:intron
AGGTTTGCTTTGTGGATGAA+CGG 0.560971 2.3:-3994048 MS.gene76158:CDS
TCGAAAATTAGGATTATGGT+GGG 0.561983 2.3:-3992820 MS.gene76158:CDS
TTGTTGTAGGCGACATACAC+GGG 0.562402 2.3:-3993634 MS.gene76158:CDS
TGCTCGTAGTATTTCCCGTA+AGG 0.566936 2.3:-3993705 MS.gene76158:CDS
GATGCAAGGGCTGGAAGGGA+TGG 0.570508 2.3:-3992089 MS.gene76158:CDS
ATTGTTGTAGGCGACATACA+CGG 0.571020 2.3:-3993635 MS.gene76158:CDS
TTAAGTAGGATGTCCTATGA+AGG 0.572031 2.3:-3994782 MS.gene76158:CDS
GCATATATAATGCTCCAAGT+TGG 0.572630 2.3:-3987621 MS.gene76158:CDS
GATGCTACCTGTAGGTTAGG+AGG 0.576637 2.3:+3987517 None:intergenic
ATCTAACAGAGATGGTCTGA+GGG 0.577450 2.3:-3992853 MS.gene76158:CDS
ATCTTGATTCGTGATTTCCA+CGG 0.577639 2.3:+3993200 None:intergenic
GACCGTGTTTATACTACTCA+CGG 0.581988 2.3:-3993055 MS.gene76158:CDS
GGAGATTAATTGTCTTGGAG+AGG 0.583257 2.3:-3993669 MS.gene76158:CDS
ATGTTTCTTTAAGAAAGCCT+CGG 0.586681 2.3:+3992785 None:intergenic
GTCGAAAATTAGGATTATGG+TGG 0.597090 2.3:-3992821 MS.gene76158:CDS
ACAACATGACATAATTCAGT+TGG 0.597658 2.3:+3993761 None:intergenic
TGATTGCGTCACCTTAGAGT+GGG 0.600614 2.3:-3993828 MS.gene76158:CDS
AGAGGCAATCCTTCCACCGA+AGG 0.602990 2.3:+3987541 None:intergenic
TCTTCTGTGAAACCTTCTCA+AGG 0.606298 2.3:+3993786 None:intergenic
CATCTAACAGAGATGGTCTG+AGG 0.608026 2.3:-3992854 MS.gene76158:CDS
ACATGAAGGACCAGATGCAA+GGG 0.611436 2.3:-3992102 MS.gene76158:intron
GATACATGAAGATGACATGT+TGG 0.615350 2.3:-3993948 MS.gene76158:CDS
TCAAAACCATCTAACAGAGA+TGG 0.617338 2.3:-3992861 MS.gene76158:CDS
GGATGAAAGAAATTGCTCAT+GGG 0.619244 2.3:-3994727 MS.gene76158:CDS
GGTTCCAAGAGCTCCTTCGG+TGG 0.623152 2.3:-3987554 MS.gene76158:CDS
TGGAGCGTTCAACTTCCGGA+TGG 0.625218 2.3:-3987601 MS.gene76158:CDS
CTCCGTGAGTAGTATAAACA+CGG 0.625283 2.3:+3993053 None:intergenic
TACTCATAACCAGCATTGTG+TGG 0.626428 2.3:+3987427 None:intergenic
AGAAGACACAGAGTGGACCT+TGG 0.630647 2.3:-3992976 MS.gene76158:intron
AACCTAGAGTATCAACAGCT+AGG 0.639256 2.3:-3994691 MS.gene76158:CDS
TAGTGCTCCAGACTACCCGC+AGG 0.640559 2.3:-3991997 MS.gene76158:intron
AATCAAGATATTGCACTACA+AGG 0.640706 2.3:-3993186 MS.gene76158:CDS
TTGAAGACCAGAAAAGGCAG+AGG 0.641243 2.3:+3987681 None:intergenic
CAAATCAGCAGAAAGACCAA+TGG 0.645891 2.3:-3991373 MS.gene76158:intron
AAACGGAAGAAGACACAGAG+TGG 0.647039 2.3:-3992983 MS.gene76158:CDS
TAAAACACATGATTGCAGCA+AGG 0.651317 2.3:-3987381 MS.gene76158:CDS
ACTTGGTCGGCAAGTAACTG+AGG 0.657194 2.3:+3994668 None:intergenic
GTGTTTATACTACTCACGGA+GGG 0.658900 2.3:-3993051 MS.gene76158:CDS
CAACTTCCGGATGGTTCAGG+CGG 0.664329 2.3:-3987592 MS.gene76158:CDS
AAACAGCGGCATGATTGCTG+CGG 0.665828 2.3:+3993023 None:intergenic
CAAAGAGTGTATCTACTCCG+TGG 0.668192 2.3:-3993217 MS.gene76158:CDS
TATGTAGATAAAGGAGCTTG+GGG 0.671070 2.3:-3993533 MS.gene76158:CDS
ATGAAGGCTTGGATGACCAG+AGG 0.673176 2.3:-3994766 MS.gene76158:CDS
CCGTAAGGAACCAAACTGTG+TGG 0.686223 2.3:-3993690 MS.gene76158:CDS
CTTTCCTGAAGGGAAAACAG+CGG 0.692197 2.3:+3993009 None:intergenic
CGAAAATTAGGATTATGGTG+GGG 0.695411 2.3:-3992819 MS.gene76158:CDS
AAGGTGACGCAATCATCAGG+AGG 0.701699 2.3:+3993836 None:intergenic
TCAGCACCAAAACCAAGACA+AGG 0.723654 2.3:+3990340 None:intergenic
GGATACAGCATAGATCACGA+TGG 0.727398 2.3:-3992047 MS.gene76158:CDS
GTCAACCAAGATCTGCAATG+GGG 0.743093 2.3:-3993999 MS.gene76158:CDS
TCTAACAGAGATGGTCTGAG+GGG 0.744889 2.3:-3992852 MS.gene76158:CDS
GTGGGGTCCTGATTGCACCG+AGG 0.749686 2.3:-3992802 MS.gene76158:CDS
CGTGTTTATACTACTCACGG+AGG 0.783032 2.3:-3993052 MS.gene76158:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr2.3 gene 3987369 3994934 3987369 ID=MS.gene76158
chr2.3 mRNA 3987369 3994934 3987369 ID=MS.gene76158.t1;Parent=MS.gene76158
chr2.3 exon 3994932 3994934 3994932 ID=MS.gene76158.t1.exon1;Parent=MS.gene76158.t1
chr2.3 CDS 3994932 3994934 3994932 ID=cds.MS.gene76158.t1;Parent=MS.gene76158.t1
chr2.3 exon 3994670 3994834 3994670 ID=MS.gene76158.t1.exon2;Parent=MS.gene76158.t1
chr2.3 CDS 3994670 3994834 3994670 ID=cds.MS.gene76158.t1;Parent=MS.gene76158.t1
chr2.3 exon 3993499 3994068 3993499 ID=MS.gene76158.t1.exon3;Parent=MS.gene76158.t1
chr2.3 CDS 3993499 3994068 3993499 ID=cds.MS.gene76158.t1;Parent=MS.gene76158.t1
chr2.3 exon 3992977 3993251 3992977 ID=MS.gene76158.t1.exon4;Parent=MS.gene76158.t1
chr2.3 CDS 3992977 3993251 3992977 ID=cds.MS.gene76158.t1;Parent=MS.gene76158.t1
chr2.3 exon 3992784 3992920 3992784 ID=MS.gene76158.t1.exon5;Parent=MS.gene76158.t1
chr2.3 CDS 3992784 3992920 3992784 ID=cds.MS.gene76158.t1;Parent=MS.gene76158.t1
chr2.3 exon 3991998 3992116 3991998 ID=MS.gene76158.t1.exon6;Parent=MS.gene76158.t1
chr2.3 CDS 3991998 3992116 3991998 ID=cds.MS.gene76158.t1;Parent=MS.gene76158.t1
chr2.3 exon 3991374 3991478 3991374 ID=MS.gene76158.t1.exon7;Parent=MS.gene76158.t1
chr2.3 CDS 3991374 3991478 3991374 ID=cds.MS.gene76158.t1;Parent=MS.gene76158.t1
chr2.3 exon 3990300 3990368 3990300 ID=MS.gene76158.t1.exon8;Parent=MS.gene76158.t1
chr2.3 CDS 3990300 3990368 3990300 ID=cds.MS.gene76158.t1;Parent=MS.gene76158.t1
chr2.3 exon 3987525 3987719 3987525 ID=MS.gene76158.t1.exon9;Parent=MS.gene76158.t1
chr2.3 CDS 3987525 3987719 3987525 ID=cds.MS.gene76158.t1;Parent=MS.gene76158.t1
chr2.3 exon 3987369 3987452 3987369 ID=MS.gene76158.t1.exon10;Parent=MS.gene76158.t1
chr2.3 CDS 3987369 3987452 3987369 ID=cds.MS.gene76158.t1;Parent=MS.gene76158.t1
Gene Sequence

>MS.gene76158

ATGGTTAACTTTGCTTCTTTCATGTATTCATTCATGATGGATTTTGTTAATATTGGTGTTTTTTTGGTCTATCTTTGAAGTGACTTGAGGCAGTTTGCAGGTGTGTGCATCCAGAGATATCATTCATATGTTAAGTAGGATGTCCTATGAAGGCTTGGATGACCAGAGGATGCATTTAGTATTGAGGATGAAAGAAATTGCTCATGGGATTGTTGATAAGCAACCTAGAGTATCAACAGCTAGGCCTCAGTTACTTGCCGACCAAGTAAGGATTAAACTGCACTGGATGTTTTAGTAAAAAGCTGAATTAAGTGTTTATTCAATAAGGTCCTAGTAGGTAGGAACTTATTTAAGCTGTTTTTATAATCACAGAGGAAACAAGTTTAACCTCGACATCAATGATCGGTTTGTATAATCCATCCTCAGGATCTTATGAAAATAAGCTAAAAGAGGATTGTTAGGCACACTCTCTTCTCAACACTCACTCTAACAATTACTCTCTTATTAAGCAAAACCCATATGGGTTCCACCACTTTATGTGAGACCCATTTCCGAAGTATGGGACCCACATTGATATCACCCAATAAGAGAGCGAGTGTTAGAGTGAGCGTGCGAAAGAGAAGTGTGGGACCCACATTGATATCACCCACACTGATAGCACTCCTCTAAGCTAAAAATAGCTCATGGACTTATACTAAGCTAATTAAATAAGCTCTTCTAGACACTTATGCTAGTGCTTGTGTTGTAACTTGTAAGATAAGTGCAAATAAGTTCTTCCAGATGCCTGCTCAGTATCTTTTTGACTTCTTCCCCCTCTTTTGTCTACATTTAAGATTTTCCTTAAGATACATTGATCAGTTTTACAGGTTTGCTTTGTGGATGAACGGACAAGAGACAGTGCTCCTGTTGTTGAGTCAACCAAGATCTGCAATGGGGATGCTCTAATTGACGAGACACAAAGCATGATACATGAAGATGACATGTTGGACGTCGATCATGTTTTAGGATTTGAAAATGGGATAGATGAAGTAGAAGAATCTCTGTTGTCATCATGCTTTCAGCAGTTTCTTTTGTGGCCTCCTGATGATTGCGTCACCTTAGAGTGGGTTCAGGACATGACTTTCATCCTTGAGAAGGTTTCACAGAAGACGCCAACTGAATTATGTCATGTTGTGCAGAGCTTTGTGGTGTACAAATTGATAGATGCTGCTCGTAGTATTTCCCGTAAGGAACCAAACTGTGTGGAGATTAATTGTCTTGGAGAGGCTTCAAGAGTCATTGTTGTAGGCGACATACACGGGCAGTTTCATGATTTAATGCTTCTATTGAAGCATGCAGGAGTGCCTTTTGAGAACCAATTTTATGTTTTCAGTGGAAATTATGTAGATAAAGGAGCTTGGGGCGTTGAAGTATTCTTGGTCTTGCTGGCTTGGAAGGTAAGGTGACAGTTATGATACTTAATATAGAAATGTTTAGATCTTCAATGAATTTTCTGCAGTTATTGGCCTGTTGGTGCATATTCTCCAGGAGGAGAAAGAAGAACACAGAAGAGTACCGCATAGAAATATTAAACGACTTGTGTCAAAAAAAGAAAAAGAAATATTAAATGACCTAGCAACTTTTATAGTGACCAAATGCTATACCTGAGTTATCAGTATGTTAACTCTGTCATTATATTTTCAGATCTTGATGCCTCAAAGAGTGTATCTACTCCGTGGAAATCACGAATCAAGATATTGCACTACAAGGTATGGTTTTAAGAAGGAGGTGCAGACCAAATATGGCAATCAAAGCGAAGATGTGTACAATAAATTCTTAGAGTGTTTCAAGGAGCTTCCATTAGCTTCGGTTATTGCTGACCGTGTTTATACTACTCACGGAGGGCTTTTCCGCAGCAATCATGCCGCTGTTTTCCCTTCAGGAAAGCCAAAACGGAAGAAGACACAGAGTGGACCTTGGTTCTTTAGCAGATTTATCTCAAGTTAAAAGAGCTTGCATAGATTCTCCTCCTGAGGGTCCTAATTAATATATTATTGAGTGACATTCTCTGGTCAAAACCATCTAACAGAGATGGTCTGAGGGGTAATGCAGGTCGAAAATTAGGATTATGGTGGGGTCCTGATTGCACCGAGGCTTTCTTAAAGAAACATAGTTTAAAGGTAATATTCCAAATAATAATATTTTGACTAGTAAAGAATAACAAAATTCCTATTTATTTTATTTTATTGTAATAAGTAGTTTGATTAAGATTTCTTGGTCTTCTATTTTTAAAGTTGTGTTTGGTGTCATTTATGTCTATCCTACCAAATTATGCTTCTTCTGTCAGCAAGCTATAATCATGTTCTAGGCATTCTTATCTCTATCCCTTGCCCTTCTCTCTTTTTACTTTCTTTCTTAAAGCTTAGTCTACTTGTCTTTCTAGTTTCTTTTGTTATTCCTAGGACCGGAAATTTCAGCGCTAAATGAAAATAAAAACATCAGTATCATCCTTTCCTGCAAGACAATGGTATTATTCATGTATCTGAATTTGCACACACTTGATATAATGCTCCAATTCATGTTCTTTATATCTGTCTGCTTACCTAGAATGCAATCACTAAAATCCCACACTTAATTAGCTTTTTATTAGATGGTTGGAAATGTCAATAAAAATTGTTACCAACAATAACTGTCATTGTTCAACAAGATGAATTACATGTTTAGATGTGAATAAAAGAAGCAATGCAAGTTATAAATATCATTTGATCGCCCAACAAATATTCTTCTAGCTTAGTAAATATTATTCTTCCTGCATAACTGATCATCAGATCACATGAAGGACCAGATGCAAGGGCTGGAAGGGATGGTTTTGGGGATATGTTGAATGGATACAGCATAGATCACGATGGACAATCAAGAAAACTATATGCAATTTTTAGTGCTCCAGACTACCCGCAGGTTAAATTTCATATTCAACTAGCAATTTGTTATTTATATTTTTCATTTATAAAAAAATTGCATTTGTTGCACCTGTTAACTTTTTCTTAAGCAATGTCATAATGGTTCACTAATTGATTTTTGGGAACACTTAAGACAACAAGCTCAGCCATTGCCATATACGAAAGCATGTATATATTGACATCCAATTTATGCCATTGTCTTTTAAGATTAGAGTTTTTTCTGCAAGTTGAATCTGATGTTTGCCTAGGAATCTAGTATGTATTATGTAGCCGTGTGTTTTCAAATAACTTATCTTTTAAATGGTGGAAAATTTATACATAATAAACAAGTGGTGTATGTTTCGTTTGCAACTCTACATATGGGGATTGTTACAGACATATAGATTTGAAGAAAACATGTAATATTGTGCACTTGTAGTGTTTGAGTGATTAACTGTAGCTTAATAAAAGGATGCGTGACATTGAGATCTGCAGCAACTAAAGTGTCGTATCTTTTTAAAGGTCTTCTGTATTGCAGTTTGGGAAACAGAGATATAACAATGAAGGAGCATATGCAATATTGAAGTCACCTGATTTTGCAAGTCCTTACTTTCAGTCATTCAAATCAGCAGAAAGACCAATGGTAACGAGTTCTTAACTAGTTATCTTACAAAGATTGCATGACATATATTTCGTTGGGATCCCACATCGACCTGAGATATGGCTGAAATAGTTCTCGTAAGACCTAGGTAATCTTCACTCCTTGAGCTAGCTTTTGGGTTGAGTTAGGTTTAGCTCAAGTGTTAAGATGAAAACGTCCGGTCGTACCAATTTCACGTTCCAAATGTCTATTCTTGGTCCTAAGACGATTGTTAAGACCTCACGTGAGCTAGAGAGAGAACCAAGGTTTGGGAATTTCTCGTCCCTTGAGCTAGTTTTTGGGATTGAGTTATGCCTAGCCTAAATTTCAATATTTTACTTTCGATCATAGGGGATGAGTTGAAAGCTGGCAGTCACTTACAGTTGGCAGAAAACATAGATTGTATTGAATCTGAAAAAGATTTTAAAAAATAATATATAGTAATCAATTTGGATAATTGTGGCCATTTATATTATCTATATGTAAAATTGTTGAAATTTGGGGCCTACTCATCCTTATAAAACTGGCTTGTAAAGTGAGGGGTGCCTCCTCTTTATAAACCCTTCTCAAGAGTTATCTATCCGACGTGGGACTAAATCCACCCCCTCAAAGCCAACACAATGAAGGTTTTGGAGGCTGCAATGCAGGCTAGCCAAAGGTCGCAATTTAGGCGACTAGTGGTGGACCGCAATTAAGGCGGAATTTCCAACAAAAATATTTTAATATATGTGAGAATTTTAATATGTAAAATTGTGGCCCTTAAAAGTACCTTAATATAGAAAATATGCATTTTAATATACCGATATATTTGGAGATATATGGTTGGCTCGGTGGTAGTGGTAGTGGTAGTTGAGTGATAAGAAAAGAGTTCAATCTCTATCCCCAACATAATACTAACTATACTAACATTGAACACTAAAAAAAAACATTGAAAGGTTTTTATTTTTTTATTTATTTTTTATCATCTCCTCTTTATTATGACTGACATTTGTAATGCTTGCTTCCCAGGTGTATCCTTGTCTTGGTTTTGGTGCTGATGATGACATGGACATCAGTAAACTGGACTCTTCTCAAATTGTATGTTAGCAAATATCTTTTCCAATAAGTGTTCCTCTGCTAATGTGTCAAGTGTGAATTGTAGTCTATAAGATGAATGAGTAAGATGAATGAGTATAGTTGCATGTAAATGCATAGACAATTCTAATATATGTAGACAATGTTTTGCTGCATATATTTCACATCATATAGCAATTAGGCTATTGTTCTAAATTTTACATTGGGTTATCAAGTGAAATTATTTCATTTTTAGTCTCAATTTTTTGTTGACATCTAAAGTGGCATTCACTATTTAGTGGCTTTATATTTTTGATACTATGTTACTTTTTTTTTTATTATAAAATCAAGTACGAATCAGAATGCTTGCTACGTCGTTTGGACCTATAGTTTCTAAAAATATGCAATCTTTTTGAAGTGTGAGATTGAATTTGAATGTTAATTTTCTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTGAATTTGAATGTTAAATTTGGGTGATTGATAAGGTGAGGATATTTAGTGGCTTTATATTTTAGTGGCTTTATATTTTTGATACTATGTTACGCTTTATATATTTGATACTATGTTACTTTTTTTTTTTTATTATAAAATCAAGTACGAATTAGAATGCTTGCTACGTCGTTTGGACCTATAGTTTCTAAAAATATGCAATCTTTTTGAAGTGTGAGATTGAATTTGAATGTTAATTTTCTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTGAGAATTTGAATGATAAAATTTGGGAGATTGAGAGATTGATTTGATACTATGTTACTTTTTTTTTTATTATAAAATCAAGTACGAATCAGAATGCTTGCTACGTCATTTGGACCTATAGTTTCTAAAAATATGCAATCTTTTTGAAGTGTGAGATTGAATTTGAATGTTAATTTTCTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTGAGAATTTGAATGATAAAATTTGGGAGATTGAGAGATTGATTTGATACTATGTTACTTTTTTTTTTATTATAAAATCAAGTACGAATCAGAATGCTTGCTACGTCGTTTGGACCTATAGTTTCTAAAAATATGCAATCTTTTTGAAGTGTGAGATTGAATTTGAATGTTAATTTTCTTCTTCTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTGAGTTCTTCTTCTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTGAGAATTTGAATGATAAAATTTGGGAATTATAAAATCAAGTACGAATCAGAATGCTTGCTACGTCGTTTGGACCTATAGTTTCTAAAAATATGCAATCTTTTTGAAGTGTGAGATTGAATTTGAATGTTAATTTTCTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTGAGAATTTGAATGATAAAATTTGGGAGATTGAGAGATTGATTTGATACTATGTTACTTTTTTTTTTTTTTATTATAAAATCAAGTACGAATCAGAATGCTTGCTACGTCGTTTGGACCTATAGTTTCTAAAAATATGCAATCTTTTTGAAGTGTGAGATTGAATTTGAATGTTAATTTTCTTCTTCTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTGAGTTCTTCTTCTTCTTTGCCTCTGTTGAAAAATTTGGGAGATTTCTTTGCCTCTGTTGAAAAATTCGGGAGATTGAGAATTTGAATGGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGGAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAAGCAGGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCGTATGCGGGAGCTTTAGTGCACCGGGTTGCCCTTTTTTTTATTGAGAATTTGAATGATAAAATTTGGGAGATTGAGAGATTGAATCTGTTAAATTTGAATGATAAAATTTGGGAGATTGAGAGATTGAATCTGTTAATTTTCTTCTTTGCCTCTGTTGAAATTTGGGGTCTAACTCATCCTTACAAAACCGGCTTGTAAGGTGAGGAGTGCCTCCTCTTTATAAACTCTGATCAAGTTTCCAATCTAACCGATGTGAGACTAAATCCACCCCCTAACTTGGGGCAGATCGCATCGCAATTTTAAGGTGGAATTACCAACCCACCCCTCACATTCGGGGCGGGATTTCCAACGCACCTGAGGTGGAATTACCAACCCACTCCCTCATATTTGGGTCGGGATTTCCAACAGCCTCCTTATCAGCTTGAATTGAGAACTTGTGTATCATTGGATTTTTAGCAATGATATTAGACTACAGATAAGTTTGACAGCTTTTTGTCACTGGTATGCTAACATGGTTAAAAATGTGTTAAGCTGAATATGAAACATAAAGTTCAGAAGACCTTGATCAGATCATCATTGCACCGTGTCTTTTTTTTATCACTTTGTAATTACACTGTCTCTCTTTTTGTATTGGGACATAAGATATGCCCAATACATTATTATTCTCATTGTCATCGTCATGTTGTATTGCTTGCTAAAGACAGATAACTGAACCAACTTAATTTTATTGATAAGGACGTAGAGGCCTCAACCTCTGCCTTTTCTGGTCTTCAAGATGCGGTGAGACCCGAATTTGACTTCGAGTCATTAGGCATATATAATGCTCCAAGTTGGAGCGTTCAACTTCCGGATGGTTCAGGCGGTACTCAAGTTGTGCAGGTTCCAAGAGCTCCTTCGGTGGAAGGATTGCCTCTGCCTCCTAACCTACAGGTAGCATCATTTACGATTTACCAACATCTTTGTTAAAGTGGCTAGTGCTGACTCGAATTCTCGTTTTTGCAGGAGCCACACAATGCTGGTTATGAGTATTTGTTCGAGCTCGTTGCTGGCCTAAAACACATGATTGCAGCAAGGGTGAGTTTGTAA

Protein sequence

>MS.gene76158.t1

MVCASRDIIHMLSRMSYEGLDDQRMHLVLRMKEIAHGIVDKQPRVSTARPQLLADQVCFVDERTRDSAPVVESTKICNGDALIDETQSMIHEDDMLDVDHVLGFENGIDEVEESLLSSCFQQFLLWPPDDCVTLEWVQDMTFILEKVSQKTPTELCHVVQSFVVYKLIDAARSISRKEPNCVEINCLGEASRVIVVGDIHGQFHDLMLLLKHAGVPFENQFYVFSGNYVDKGAWGVEVFLVLLAWKILMPQRVYLLRGNHESRYCTTRYGFKKEVQTKYGNQSEDVYNKFLECFKELPLASVIADRVYTTHGGLFRSNHAAVFPSGKPKRKKTQSGPWVLINILLSDILWSKPSNRDGLRGNAGRKLGLWWGPDCTEAFLKKHRPDARAGRDGFGDMLNGYSIDHDGQSRKLYAIFSAPDYPQFGKQRYNNEGAYAILKSPDFASPYFQSFKSAERPMVYPCLGFGADDDMDISKLDSSQIDVEASTSAFSGLQDAVRPEFDFESLGIYNAPSWSVQLPDGSGGTQVVQVPRAPSVEGLPLPPNLQEPHNAGYEYLFELVAGLKHMIAARVSL